Query psy10784
Match_columns 69
No_of_seqs 103 out of 248
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zws_A Neutral ceramidase; pri 99.8 1E-20 3.5E-25 148.2 5.5 67 1-69 107-173 (646)
2 2yl5_A Beta-N-acetylhexosamini 53.4 10 0.00035 28.1 3.1 33 14-46 398-430 (442)
3 3m20_A 4-oxalocrotonate tautom 37.7 41 0.0014 17.6 3.3 43 5-48 3-45 (62)
4 3dfe_A Putative PII-like signa 33.1 83 0.0028 19.1 4.6 31 18-48 70-100 (111)
5 1wjx_A Small protein B, SSRA-b 32.0 12 0.00042 24.1 0.5 44 25-68 30-75 (122)
6 2j9c_A GLNK1, hypothetical nit 31.5 33 0.0011 20.7 2.4 27 18-44 69-97 (119)
7 4hpv_A S-adenosylmethionine sy 29.2 32 0.0011 26.2 2.4 17 18-34 34-50 (407)
8 2cz4_A Hypothetical protein TT 28.3 1E+02 0.0035 18.8 4.4 31 18-48 83-113 (119)
9 4azs_A Methyltransferase WBDD; 28.3 51 0.0018 24.6 3.4 37 18-54 342-387 (569)
10 2eg2_A Nitrogen regulatory pro 26.2 48 0.0016 19.6 2.5 27 18-44 67-95 (112)
11 2vuw_A Serine/threonine-protei 26.0 1.4E+02 0.0046 19.6 4.9 37 9-45 155-198 (336)
12 2gw8_A PII signal transduction 25.9 49 0.0017 19.7 2.5 27 18-44 69-97 (114)
13 1hwu_A PII protein; herbaspiri 25.8 49 0.0017 19.5 2.5 27 18-44 67-95 (112)
14 4ack_A TSSL; protein transport 25.8 11 0.00037 26.0 -0.6 54 4-58 124-177 (185)
15 2xcz_A Possible ATLS1-like lig 23.5 1.1E+02 0.0039 17.5 4.9 45 4-49 59-104 (115)
16 3bzq_A Nitrogen regulatory pro 23.0 52 0.0018 19.5 2.2 26 18-43 69-96 (114)
17 3b09_A Peptidyl-prolyl CIS-tra 20.9 45 0.0015 19.6 1.5 21 9-29 46-66 (88)
18 2yl6_A Beta-N-acetylhexosamini 20.6 69 0.0024 23.5 2.8 23 16-38 411-433 (434)
19 1wak_A Serine/threonine-protei 20.4 1.4E+02 0.0049 19.6 4.1 37 10-46 141-184 (397)
20 1ixs_A Holliday junction DNA h 20.4 1.1E+02 0.0038 16.7 3.1 19 7-25 24-42 (62)
21 3dbq_A Dual specificity protei 20.4 89 0.0031 20.7 3.1 38 11-48 104-147 (343)
22 3hmm_A TGF-beta receptor type- 20.3 85 0.0029 21.1 3.0 43 10-52 95-154 (303)
No 1
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=99.81 E-value=1e-20 Score=148.25 Aligned_cols=67 Identities=46% Similarity=0.660 Sum_probs=64.1
Q ss_pred CccccccccCCccchhHHHHHHHHHHHHHHHHhcccCceEEeeeeeecCCccCCChHHHhcCCHHHhcC
Q psy10784 1 MDFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEERMR 69 (69)
Q Consensus 1 ~~~ly~its~Gf~~~~f~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~~a~iNRSp~AY~~NP~~Era~ 69 (69)
+|.||+++++||++++|++||+||++||++||++|+||+|.+++|++.++++|||+.||++|| ||++
T Consensus 107 ~~~l~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~pa~l~~g~g~~~~~~~NRs~~ay~~NP--er~~ 173 (646)
T 2zws_A 107 HYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP--DIAG 173 (646)
T ss_dssp SSHHHHGGGTBCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSSEEESCHHHHTTCS--CCTT
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeCcceecCChhhhhcCc--cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999 6753
No 2
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=53.39 E-value=10 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcccCceEEeeeee
Q psy10784 14 PDTFNAMVRGIALSISRAHNNLQEGRLFVSKGE 46 (69)
Q Consensus 14 ~~~f~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~ 46 (69)
+.+=++.|||.+.+|+.|-.+|+||.=..++..
T Consensus 398 ~~~~q~~vd~~~~~~~~a~~~l~~~~~~~~~~~ 430 (442)
T 2yl5_A 398 NRNKQAELDTLVANLKAALQGLKPAVTHSGSLD 430 (442)
T ss_dssp BGGGHHHHHHHHHHHHHHHTTC-----------
T ss_pred ChhhHHHHHHHHHHHHHHHHhCcchhccCCCcc
Confidence 356689999999999999999999865555543
No 3
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.67 E-value=41 Score=17.63 Aligned_cols=43 Identities=5% Similarity=-0.045 Sum_probs=31.6
Q ss_pred cccccCCccchhHHHHHHHHHHHHHHHHhcccCceEEeeeeeec
Q psy10784 5 FDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELL 48 (69)
Q Consensus 5 y~its~Gf~~~~f~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~ 48 (69)
.+|+..|..++.-.+++.+|++++...- ...|..+++.-.++.
T Consensus 3 I~I~~~grt~eqK~~L~~~it~~~~~~l-g~~~~~v~V~i~E~~ 45 (62)
T 3m20_A 3 LIVYGPKLDVGKKREFVERLTSVAAEIY-GMDRSAITILIHEPP 45 (62)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHHHHHH-TCCTTSCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHh-CcCcceEEEEEEEeC
Confidence 3455579999999999999999987754 355666666655553
No 4
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=33.05 E-value=83 Score=19.08 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhcccCceEEeeeeeec
Q psy10784 18 NAMVRGIALSISRAHNNLQEGRLFVSKGELL 48 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~ 48 (69)
|..|+.|+++|..+...-..|.|++..-++.
T Consensus 70 de~vd~vv~~I~~~~~t~~~G~ifVsdV~vv 100 (111)
T 3dfe_A 70 REMAEKIADQVAIKFFTDYAGIIYICEAEVL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEEEEeeEE
Confidence 4567777777755444444699998876543
No 5
>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: b.111.1.1 PDB: 3iz4_B 2czj_A*
Probab=31.96 E-value=12 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccCceEEeeeeeecCCccCCChHHH--hcCCHHHhc
Q psy10784 25 ALSISRAHNNLQEGRLFVSKGELLDANINRSPTAY--LQNPEEERM 68 (69)
Q Consensus 25 v~aI~~Ah~~l~pg~i~~~~g~l~~a~iNRSp~AY--~~NP~~Era 68 (69)
|+||+.-..|+..+-+.+-.||++=.+.+=||... .-|++..|.
T Consensus 30 VKSlR~gk~~l~dsy~~i~~gE~~L~n~hI~~y~~~~~~nhdp~R~ 75 (122)
T 1wjx_A 30 VKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRK 75 (122)
T ss_dssp HHHHHTTCEECTTCEEEEETTEEEEESCEECC--------CCTTCC
T ss_pred eeehhcCCcceeEeEEEEECCEEEEEeeECCcccccCccCCCCCch
Confidence 78999999999999999999998844444466552 125544443
No 6
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=31.46 E-value=33 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhcccC--ceEEeee
Q psy10784 18 NAMVRGIALSISRAHNNLQE--GRLFVSK 44 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~p--g~i~~~~ 44 (69)
|..|+-++++|..+-..=.| |+|++..
T Consensus 69 de~v~~vv~~I~~~~~tg~~GdGkiFV~p 97 (119)
T 2j9c_A 69 EEDVDNVIDIICENARTGNPGDGKIFVIP 97 (119)
T ss_dssp GGGHHHHHHHHHHHHCCSSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEE
Confidence 55788889999988766677 6888754
No 7
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=29.23 E-value=32 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy10784 18 NAMVRGIALSISRAHNN 34 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~ 34 (69)
|.|+|||++++.+|...
T Consensus 34 DsIcDgiaE~vS~aLs~ 50 (407)
T 4hpv_A 34 DYIADAVAEEASRKLSL 50 (407)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78999999999998543
No 8
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=28.33 E-value=1e+02 Score=18.83 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhcccCceEEeeeeeec
Q psy10784 18 NAMVRGIALSISRAHNNLQEGRLFVSKGELL 48 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~ 48 (69)
|..|+-++++|..+-..=..|+|++..-++.
T Consensus 83 de~ve~vv~~I~~~~~tg~~GkIFV~~VeV~ 113 (119)
T 2cz4_A 83 EEVALRILQRLQEEYFPHYAVIAYVENVWVV 113 (119)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEeEEE
Confidence 5678888888884333334499998876654
No 9
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=28.26 E-value=51 Score=24.57 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH------hcccCceEEeeee---eecCCccCC
Q psy10784 18 NAMVRGIALSISRAH------NNLQEGRLFVSKG---ELLDANINR 54 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah------~~l~pg~i~~~~g---~l~~a~iNR 54 (69)
+.|+..|++|+..+| .+++|++|.+... .|.|-++=|
T Consensus 342 ~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr 387 (569)
T 4azs_A 342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIV 387 (569)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEE
T ss_pred HHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCe
Confidence 468999999999996 5789999999743 456777544
No 10
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=26.19 E-value=48 Score=19.62 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhcccC--ceEEeee
Q psy10784 18 NAMVRGIALSISRAHNNLQE--GRLFVSK 44 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~p--g~i~~~~ 44 (69)
|..|+-++++|..+-..=.| |+|++..
T Consensus 67 d~~v~~vv~~I~~~~~tg~~GdGkiFV~p 95 (112)
T 2eg2_A 67 DEDVEKVVETIVKTAQTGRVGDGKIFIIP 95 (112)
T ss_dssp GGGHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEE
Confidence 45688899999887766566 6888753
No 11
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=25.96 E-value=1.4e+02 Score=19.64 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.0
Q ss_pred cCCccchhHHHHHHHHHHHHHHHH-------hcccCceEEeeee
Q psy10784 9 SLGFVPDTFNAMVRGIALSISRAH-------NNLQEGRLFVSKG 45 (69)
Q Consensus 9 s~Gf~~~~f~aiV~GIv~aI~~Ah-------~~l~pg~i~~~~g 45 (69)
...+.....-.++-.|+.|+...| .+++|..|.+...
T Consensus 155 ~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~ 198 (336)
T 2vuw_A 155 TKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKT 198 (336)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEEC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEecc
Confidence 345667778888899999999988 3899999999865
No 12
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=25.94 E-value=49 Score=19.71 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhcccC--ceEEeee
Q psy10784 18 NAMVRGIALSISRAHNNLQE--GRLFVSK 44 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~p--g~i~~~~ 44 (69)
|..|+-++++|..+-..=.| |+|++..
T Consensus 69 d~~v~~vv~~I~~~~~tg~~GdGkiFV~p 97 (114)
T 2gw8_A 69 DDAVERAIDVIVEVARSGKIGDGKIFVLP 97 (114)
T ss_dssp GGGHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEE
Confidence 45688889999887766566 6888753
No 13
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=25.84 E-value=49 Score=19.52 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcccC--ceEEeee
Q psy10784 18 NAMVRGIALSISRAHNNLQE--GRLFVSK 44 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~p--g~i~~~~ 44 (69)
|..|+-++++|..+-..=.| |+|++..
T Consensus 67 d~~v~~vv~~I~~~~~tg~~GdGkiFV~~ 95 (112)
T 1hwu_A 67 DKVVEQAVDAIIKAARTGKIGDGKIFVQE 95 (112)
T ss_dssp GGGHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEE
Confidence 56788889999887666566 6777753
No 14
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=25.83 E-value=11 Score=25.99 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=26.0
Q ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHhcccCceEEeeeeeecCCccCCChHH
Q psy10784 4 LFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTA 58 (69)
Q Consensus 4 ly~its~Gf~~~~f~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~~a~iNRSp~A 58 (69)
+|-.-++||....++.+++--..+-++--...-|+ =.++++-.-|.++|-+|..
T Consensus 124 ~YlcL~LGF~GkY~~~~~~~~~~~yk~e~~~~i~~-s~~~s~~f~~~~~~~~~~~ 177 (185)
T 4ack_A 124 ISLILHNDFYGKYYDNIYNHSFLAYKKEIDKHIEN-STIDSVNFIDIPVNSPPLS 177 (185)
T ss_dssp HHHHHHTTCCGGGTTCTTCHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHCCCceehhHhHHHHHHHHHHHHHHhhCCc-cccCCcCceeCCCCCCCcc
Confidence 44456899999999998888788888877777787 5788899999999987753
No 15
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.46 E-value=1.1e+02 Score=17.53 Aligned_cols=45 Identities=7% Similarity=0.175 Sum_probs=34.9
Q ss_pred ccccccC-CccchhHHHHHHHHHHHHHHHHhcccCceEEeeeeeecC
Q psy10784 4 LFDLNSL-GFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLD 49 (69)
Q Consensus 4 ly~its~-Gf~~~~f~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~~ 49 (69)
+.+|++. |..++.-.++...|.+.+...- ...|.++++.=.++..
T Consensus 59 ~v~i~~~~g~t~eqk~~l~~~i~~~l~~~l-gi~~~~v~I~~~e~~~ 104 (115)
T 2xcz_A 59 YVEVKSIGALDGSRTQEVSELVCGHIEQNL-GIPADRIYIGFEDVPA 104 (115)
T ss_dssp EEEEEESSCCCTTHHHHHHHHHHHHHHHHH-CCCGGGEEEEEEECCG
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHh-CcCcccEEEEEEECCH
Confidence 4456555 5888999999999998886644 7889999988877763
No 16
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=22.98 E-value=52 Score=19.49 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhcccC--ceEEee
Q psy10784 18 NAMVRGIALSISRAHNNLQE--GRLFVS 43 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~p--g~i~~~ 43 (69)
|..|+-++++|..+-..=.| |+|++.
T Consensus 69 de~v~~vv~~I~~~~~tg~~GdGkiFV~ 96 (114)
T 3bzq_A 69 DSIVDKVVDSIVRAARTGKIGDGKVWVS 96 (114)
T ss_dssp TTTHHHHHHHHHHHHCCSSTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 45688889999887766666 677775
No 17
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=20.89 E-value=45 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=15.4
Q ss_pred cCCccchhHHHHHHHHHHHHH
Q psy10784 9 SLGFVPDTFNAMVRGIALSIS 29 (69)
Q Consensus 9 s~Gf~~~~f~aiV~GIv~aI~ 29 (69)
..|+..-..++++.||.+++.
T Consensus 46 ~~g~~~lD~dav~~Gl~Dal~ 66 (88)
T 3b09_A 46 ANSFEGIDIPAVQAGLADAFA 66 (88)
T ss_dssp HSCCTTCCHHHHHHHHHHHHT
T ss_pred hCCccccCHHHHHHHHHHHHc
Confidence 346666688899888887763
No 18
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=20.65 E-value=69 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccCc
Q psy10784 16 TFNAMVRGIALSISRAHNNLQEG 38 (69)
Q Consensus 16 ~f~aiV~GIv~aI~~Ah~~l~pg 38 (69)
.=.+.|||.+.+|..|.++|+|.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
T 2yl6_A 411 AQQDTIDQAIAKLQETVNNLTLT 433 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 33578999999999999999985
No 19
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=20.44 E-value=1.4e+02 Score=19.65 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhc-------ccCceEEeeeee
Q psy10784 10 LGFVPDTFNAMVRGIALSISRAHNN-------LQEGRLFVSKGE 46 (69)
Q Consensus 10 ~Gf~~~~f~aiV~GIv~aI~~Ah~~-------l~pg~i~~~~g~ 46 (69)
.++.....-.++..|++|+...|+. ++|..|.+....
T Consensus 141 ~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~ 184 (397)
T 1wak_A 141 QGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNE 184 (397)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccc
Confidence 3577777788899999999988875 789999997553
No 20
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.37 E-value=1.1e+02 Score=16.73 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.1
Q ss_pred cccCCccchhHHHHHHHHH
Q psy10784 7 LNSLGFVPDTFNAMVRGIA 25 (69)
Q Consensus 7 its~Gf~~~~f~aiV~GIv 25 (69)
+.++||.+..-+..|..+.
T Consensus 24 L~aLGY~~~ea~kav~~v~ 42 (62)
T 1ixs_A 24 LAALGFKEAQARAVVLDLL 42 (62)
T ss_dssp HHHTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 4679999998888887763
No 21
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=20.35 E-value=89 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=29.0
Q ss_pred CccchhHHHHHHHHHHHHHHHH------hcccCceEEeeeeeec
Q psy10784 11 GFVPDTFNAMVRGIALSISRAH------NNLQEGRLFVSKGELL 48 (69)
Q Consensus 11 Gf~~~~f~aiV~GIv~aI~~Ah------~~l~pg~i~~~~g~l~ 48 (69)
.+....--.+...|++++...| .++.|..|.+..+.+.
T Consensus 104 ~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~~~~~k 147 (343)
T 3dbq_A 104 SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK 147 (343)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEECCcEE
Confidence 4556666778888888888765 6788999999877655
No 22
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=20.35 E-value=85 Score=21.12 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHH--------------hcccCceEEeee---eeecCCcc
Q psy10784 10 LGFVPDTFNAMVRGIALSISRAH--------------NNLQEGRLFVSK---GELLDANI 52 (69)
Q Consensus 10 ~Gf~~~~f~aiV~GIv~aI~~Ah--------------~~l~pg~i~~~~---g~l~~a~i 52 (69)
.++..+.--.+.-+|++++...| .+++|..|.+.. -.|.|-+.
T Consensus 95 ~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl 154 (303)
T 3hmm_A 95 YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154 (303)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence 34555555667788999998875 568899999963 34556665
Done!