Query psy10784
Match_columns 69
No_of_seqs 103 out of 248
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 18:26:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjxa_ b.111.1.1 (A:) Small p 40.4 3.5 0.00025 25.0 0.5 33 25-57 28-60 (120)
2 d2cz4a1 d.58.5.1 (A:1-100) Hyp 35.7 32 0.0023 18.9 4.4 31 18-48 64-94 (100)
3 d1ofla_ b.80.1.4 (A:) Chondroi 30.2 15 0.0011 24.3 2.5 26 25-50 6-32 (481)
4 d2java1 d.144.1.7 (A:3-271) Se 27.9 32 0.0024 21.2 3.7 33 12-44 106-149 (269)
5 d1tc3c_ a.4.1.2 (C:) Transposa 27.9 9.7 0.0007 19.9 0.9 15 51-65 30-47 (51)
6 d1clia1 d.79.4.1 (A:5-170) Ami 24.6 32 0.0024 21.0 3.2 33 7-39 105-137 (166)
7 d1gyza_ a.144.2.1 (A:) Ribosom 24.5 14 0.001 19.5 1.2 16 12-27 41-56 (60)
8 d1zara2 d.144.1.9 (A:91-281) R 21.0 59 0.0043 18.4 3.8 37 12-48 100-142 (191)
9 d2hbka1 a.60.8.4 (A:421-516) E 20.5 32 0.0024 18.4 2.3 28 9-36 66-93 (96)
10 d1uj8a1 a.159.5.1 (A:13-76) Ir 20.0 28 0.002 18.7 1.9 11 22-32 50-60 (64)
No 1
>d1wjxa_ b.111.1.1 (A:) Small protein B (SmpB) {Thermus thermophilus [TaxId: 274]}
Probab=40.39 E-value=3.5 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.6
Q ss_pred HHHHHHHHhcccCceEEeeeeeecCCccCCChH
Q psy10784 25 ALSISRAHNNLQEGRLFVSKGELLDANINRSPT 57 (69)
Q Consensus 25 v~aI~~Ah~~l~pg~i~~~~g~l~~a~iNRSp~ 57 (69)
|+||+..+-++..+-+.+-.+|++=.|.+=||.
T Consensus 28 VKSiR~g~~~l~~sy~~~~~~E~~L~n~~I~~y 60 (120)
T d1wjxa_ 28 VKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 60 (120)
T ss_dssp HHHHHTTCEECTTCEEEEETTEEEEESCEECC-
T ss_pred HHHHHhCCCCcCceEEEEEcCcEEEEeeeecch
Confidence 789999999999999999999998444444444
No 2
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=35.71 E-value=32 Score=18.90 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcccCceEEeeeeeec
Q psy10784 18 NAMVRGIALSISRAHNNLQEGRLFVSKGELL 48 (69)
Q Consensus 18 ~aiV~GIv~aI~~Ah~~l~pg~i~~~~g~l~ 48 (69)
|..++-++++|..+...--+|.|++..=++.
T Consensus 64 ~e~~~~vv~~I~~~~~~~~~G~ifv~~VeV~ 94 (100)
T d2cz4a1 64 EEVALRILQRLQEEYFPHYAVIAYVENVWVV 94 (100)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEEEe
Confidence 4567778888876544445599999876654
No 3
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}
Probab=30.22 E-value=15 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.3
Q ss_pred HHHHHHHHhcccCc-eEEeeeeeecCC
Q psy10784 25 ALSISRAHNNLQEG-RLFVSKGELLDA 50 (69)
Q Consensus 25 v~aI~~Ah~~l~pg-~i~~~~g~l~~a 50 (69)
-++|++|-++++|| .|.|..|.-.+.
T Consensus 6 ~~tiq~Ai~~a~pGDtI~l~~GtY~~~ 32 (481)
T d1ofla_ 6 NETLYQVVKEVKPGGLVQIADGTYKDV 32 (481)
T ss_dssp HHHHHHHHHHCCTTCEEEECSEEEETC
T ss_pred hHHHHHHHHhCCCCCEEEECCCEEEcC
Confidence 36899999999998 888888876553
No 4
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.88 E-value=32 Score=21.24 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=21.8
Q ss_pred ccchhHHHHHHHHHHHHHH-----------HHhcccCceEEeee
Q psy10784 12 FVPDTFNAMVRGIALSISR-----------AHNNLQEGRLFVSK 44 (69)
Q Consensus 12 f~~~~f~aiV~GIv~aI~~-----------Ah~~l~pg~i~~~~ 44 (69)
+..+.--.+...|++|+.. .|.+++|..|.+..
T Consensus 106 l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~ 149 (269)
T d2java1 106 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDG 149 (269)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCC
Confidence 4555566677888888865 47888999999964
No 5
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=27.86 E-value=9.7 Score=19.89 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=10.8
Q ss_pred ccCCChHH---HhcCCHH
Q psy10784 51 NINRSPTA---YLQNPEE 65 (69)
Q Consensus 51 ~iNRSp~A---Y~~NP~~ 65 (69)
-||||..+ |++||-+
T Consensus 30 ~i~rSR~~ir~Yl~~Pl~ 47 (51)
T d1tc3c_ 30 KISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HHTCCHHHHHHHHHCSTT
T ss_pred HHHHhHHHHHHHhcChhh
Confidence 36888765 8888843
No 6
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.60 E-value=32 Score=21.04 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=26.9
Q ss_pred cccCCccchhHHHHHHHHHHHHHHHHhcccCce
Q psy10784 7 LNSLGFVPDTFNAMVRGIALSISRAHNNLQEGR 39 (69)
Q Consensus 7 its~Gf~~~~f~aiV~GIv~aI~~Ah~~l~pg~ 39 (69)
+...-.+++.+..||+||.++-+.+.-.|.=|.
T Consensus 105 ~a~~~~~~~~~~~iv~Gi~~ac~~~~~~LiGGE 137 (166)
T d1clia1 105 YATGKLDVDTASAVISGIAEGCLQSGCSLVGGE 137 (166)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhCCcccccc
Confidence 445567889999999999999999988776443
No 7
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}
Probab=24.47 E-value=14 Score=19.53 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=12.1
Q ss_pred ccchhHHHHHHHHHHH
Q psy10784 12 FVPDTFNAMVRGIALS 27 (69)
Q Consensus 12 f~~~~f~aiV~GIv~a 27 (69)
.+|++|.+||+=+=++
T Consensus 41 ~dp~~F~~lv~~~k~~ 56 (60)
T d1gyza_ 41 RDPQAFEQVVNKVKEA 56 (60)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4789999998865444
No 8
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.00 E-value=59 Score=18.43 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=28.5
Q ss_pred ccchhHHHHHHHHHHHHHHHH------hcccCceEEeeeeeec
Q psy10784 12 FVPDTFNAMVRGIALSISRAH------NNLQEGRLFVSKGELL 48 (69)
Q Consensus 12 f~~~~f~aiV~GIv~aI~~Ah------~~l~pg~i~~~~g~l~ 48 (69)
+.......+...+++++..-| .++.|+.|.+..+.+.
T Consensus 100 l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~~~ 142 (191)
T d1zara2 100 VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEGIW 142 (191)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCCEE
Confidence 344556678888888888865 5788999999987765
No 9
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.46 E-value=32 Score=18.42 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=23.4
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHhccc
Q psy10784 9 SLGFVPDTFNAMVRGIALSISRAHNNLQ 36 (69)
Q Consensus 9 s~Gf~~~~f~aiV~GIv~aI~~Ah~~l~ 36 (69)
..|+.+.......+.|++.|..|-++.+
T Consensus 66 i~g~~~~~~~~~g~eil~~I~~a~~~~~ 93 (96)
T d2hbka1 66 LTNGVTEHVRQNAKLLANLIRDALRNIK 93 (96)
T ss_dssp CTTCCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688888888889999999999987654
No 10
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=20.00 E-value=28 Score=18.72 Aligned_cols=11 Identities=18% Similarity=-0.015 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q psy10784 22 RGIALSISRAH 32 (69)
Q Consensus 22 ~GIv~aI~~Ah 32 (69)
++|.+||++|.
T Consensus 50 EkiLEAIQmaW 60 (64)
T d1uj8a1 50 EKILEAILLVW 60 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999999886
Done!