RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10784
         (69 letters)



>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
           lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas
           aeruginosa} PDB: 2zxc_A*
          Length = 646

 Score = 74.9 bits (183), Expect = 5e-18
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 2   DFLFDLNSLGFVPDTFNAMVRGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQ 61
             +++L+ LGF   TFNA+V GI  SI RA   LQ GRLF   GEL +A+ NRS  ++L+
Sbjct: 108 YAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLK 167

Query: 62  NPEEERM 68
           NP+    
Sbjct: 168 NPDIAGY 174


>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
           glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
           3.30A {Clostridium perfringens}
          Length = 737

 Score = 27.3 bits (59), Expect = 0.31
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 22  RGIALSISRAHNNLQEGRLFVSKGELLDANINRSPTAYLQNPEEE 66
           R +A+  +    +  +G+L +     LD  +N+    +  NP E 
Sbjct: 359 RNMAVWWNYPVTDYFKGKLALGPMHGLDKGLNQYVDFFTVNPMEH 403


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.2 bits (52), Expect = 4.3
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 9/38 (23%)

Query: 3   FLFDLNSLGFVPDTFNAMVRGI---------ALSISRA 31
           ++     LGF P    + ++G          A++I+  
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,040,972
Number of extensions: 46991
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)