RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10784
         (69 letters)



>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A
          {Clostridium thermocellum [TaxId: 1515]}
          Length = 96

 Score = 25.4 bits (55), Expect = 0.40
 Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 10/61 (16%)

Query: 2  DFLFDLNSLGFVPDTFNAMVRGIALS----------ISRAHNNLQEGRLFVSKGELLDAN 51
          DF FD      V   F   + G  L           I+    N     L +S+   LD  
Sbjct: 11 DFSFDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRV 70

Query: 52 I 52
          I
Sbjct: 71 I 71


>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 157

 Score = 23.3 bits (49), Expect = 3.1
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 5/19 (26%)

Query: 40 LFVSKGELLDANINRSPTA 58
          LFV  G     NI RSP A
Sbjct: 9  LFVCLG-----NICRSPIA 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 243,335
Number of extensions: 7999
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)