BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10788
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KHT3|CL16A_HUMAN Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=2 SV=2
Length = 1053
Score = 272 bits (696), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 147/164 (89%), Gaps = 2/164 (1%)
Query: 1 MF-RSRSWFGGGMWK-PKNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIW 58
MF RSRSW GGG K +N HSL+ LKYLY+VL+KN TV+E NR LLVE++RSI EILIW
Sbjct: 1 MFGRSRSWVGGGHGKTSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIW 60
Query: 59 GDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSN 118
GDQNDSSVFDFFLEKNM FFLNIL+Q+ G YVCVQLLQTLNILFENI +ETSLYYLLSN
Sbjct: 61 GDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSN 120
Query: 119 NHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNE 162
N+VNSIIVHKFDFSDEE+MAYYISFLKTLSLKLN+HT+HFFYNE
Sbjct: 121 NYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHFFYNE 164
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 124 IIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQSILAPATDSASDK 183
++ H D D++ A ++ L L SH N+ E + I P ++A +K
Sbjct: 484 MVYHALDSPDDDYHALFVLCL----LYAMSH------NKGMDPEKLERIQLPVPNAA-EK 532
Query: 184 PSYNSSLVDKLIDIVTLSCQPGCRVRLVTLEVTILLLKKLVV 225
+YN L ++LI I+ + QP ++RL TLE++ LLLK+ V+
Sbjct: 533 TTYNHPLAERLIRIMNNAAQPDGKIRLATLELSCLLLKQQVL 574
>sp|Q80U30|CL16A_MOUSE Protein CLEC16A OS=Mus musculus GN=Clec16a PE=2 SV=2
Length = 1036
Score = 271 bits (693), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 147/164 (89%), Gaps = 2/164 (1%)
Query: 1 MF-RSRSWFGGGMWKP-KNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIW 58
MF RSRSW GGG K +N HSL+ LKYLY+VL+KN TV+E NR LLVE++RSI EILIW
Sbjct: 1 MFGRSRSWVGGGHSKSSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIW 60
Query: 59 GDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSN 118
GDQNDSSVFDFFLEKNM FFLNIL+Q+ G YVCVQLLQTLNILFENI +ETSLYYLLSN
Sbjct: 61 GDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSN 120
Query: 119 NHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNE 162
N+VNSIIVHKFDFSDEE+MAYYISFLKTLSLKLN+HT+HFFYNE
Sbjct: 121 NYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHFFYNE 164
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 124 IIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQSILAPATDSASDK 183
++ H D D++ A ++ L L SH +L+ +L S ++K
Sbjct: 468 MVYHALDSPDDDYHALFVLCL----LYAMSHNKGMDPEKLKRIQL-------PVPSEAEK 516
Query: 184 PSYNSSLVDKLIDIVTLSCQPGCRVRLVTLEVTILLLKKLVV 225
+YN L ++LI I+ + QP R+RL TLE++ LLLK+ V+
Sbjct: 517 TTYNHLLAERLIRIMNNAAQPDGRIRLATLELSCLLLKQQVL 558
>sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1 OS=Caenorhabditis elegans GN=gop-1
PE=2 SV=1
Length = 892
Score = 233 bits (595), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 137/162 (84%), Gaps = 2/162 (1%)
Query: 1 MFRSRSWFGGGMWKPKNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGD 60
MFR + G +WKPKNPHSLE LKYL VL+KN+ V+E+N+ +LVE+LR+IAEILIWGD
Sbjct: 1 MFR-KLGSSGSLWKPKNPHSLEYLKYLQGVLTKNEKVTENNKKILVEALRAIAEILIWGD 59
Query: 61 QNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNH 120
QND+SVFDFFLE+ ML +FL I++Q + + VQLLQTLNILFENIR+ETSLY+LLSNNH
Sbjct: 60 QNDASVFDFFLERQMLLYFLKIMEQ-GNTPLNVQLLQTLNILFENIRHETSLYFLLSNNH 118
Query: 121 VNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNE 162
VNSII HKFD ++E+MAYYISFLKTLS KLN TIHFF+NE
Sbjct: 119 VNSIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFFFNE 160
>sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943
PE=3 SV=1
Length = 1550
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 120/152 (78%)
Query: 13 WKPKNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLE 72
KPKN S+E L+YL+N L KNQ ++ N+ L+VESLR IAE++IWGDQ+D+ FDFFLE
Sbjct: 8 MKPKNKFSIENLRYLHNTLKKNQIITAQNKNLIVESLRQIAEVMIWGDQHDNLFFDFFLE 67
Query: 73 KNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFS 132
KN++ FF+ L Q+ + V +QLLQTL+IL EN+RNE S+Y+LLSNN++N II+HKFDFS
Sbjct: 68 KNIMGFFIQFLAQKTSTEVTIQLLQTLSILVENLRNENSIYFLLSNNYINEIIIHKFDFS 127
Query: 133 DEEVMAYYISFLKTLSLKLNSHTIHFFYNELR 164
EEV+ Y++S LK LSLKL+ T++FF+N +
Sbjct: 128 SEEVLDYFVSLLKALSLKLDKSTVNFFFNHVE 159
>sp|P47650|PSTB_MYCGE Phosphate import ATP-binding protein PstB OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=pstB PE=3
SV=1
Length = 329
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 58 WGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLS 117
W ++N +FD L+ I K CG ++ L LN L EN R +Y+L
Sbjct: 91 WYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGK 150
Query: 118 NNHVNSIIVHKFDFSD------EEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQS 171
N +NS I++ +++ + S + ++ + +H IH N+ E+ +
Sbjct: 151 N--INSGIINDLTLRTSVGMVFQKLTPFNFSIFENIAYGIRAHGIH---NKNAINEIVRQ 205
Query: 172 ILAPAT--DSASDKPSYNSSLVDKLIDIVTLSC---QPGCRVRLVTLEVTILLL 220
L A D D N++ TLS Q C R + L+ +LL+
Sbjct: 206 ALISAALWDEVKDNLHRNAN---------TLSGGQQQRLCIARAIALQPDVLLM 250
>sp|P75186|PSTB_MYCPN Phosphate import ATP-binding protein PstB OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=pstB PE=3 SV=1
Length = 329
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 58 WGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLS 117
W +++ +FD L+ I K CG ++ L LN L EN+R +++L
Sbjct: 91 WYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGK 150
Query: 118 NNHVNSIIVHKFDFSD------EEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQS 171
N +NS I++ +++ + S + ++ L +H IH N+ E+ +
Sbjct: 151 N--INSGIINDLTLRTRVGMVFQQLTPFNFSIFENIAYGLRAHGIH---NKQAIHEIVEQ 205
Query: 172 ILAPAT--DSASDKPSYNSSLVDKLIDIVTLSC---QPGCRVRLVTLEVTILLL 220
L D D N++ TLS Q C R + L+ +LL+
Sbjct: 206 ALKSTALWDEVKDNLHRNAN---------TLSGGQQQRLCIARAIALQPDVLLM 250
>sp|Q86UK5|LBN_HUMAN Limbin OS=Homo sapiens GN=EVC2 PE=1 SV=1
Length = 1308
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 107 RNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNELRGT 166
RN T L L S ++ V ++I+FL +L L + + Y L+G
Sbjct: 272 RNRTQLKVLFSITAEENVTV--LPHHGLHAAGFFIAFLLSLVLTWAALFLMVRYQCLKGN 329
Query: 167 ELT-------QSILAPATDSASDKPSYNSSLVDKLIDIVTLSCQPGCRVR-LVTLEVTIL 218
LT +S L P +++D + + SL D++IDI++ S PG ++ L LE+ L
Sbjct: 330 MLTRHRVWQYESKLEPLPFTSADGVNEDLSLNDQMIDILS-SEDPGSMLQALEELEIATL 388
>sp|P70718|6PGD_AGGAC 6-phosphogluconate dehydrogenase, decarboxylating
OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3
SV=1
Length = 484
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 119 NHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQSILAPATD 178
H ++ + ++ D +++ FLK + L+ + +NE R TEL ++ D
Sbjct: 181 GHFVKMVHNGIEYGDMQLICEAYQFLKE-GVGLSDDELQATFNEWRNTELDSYLIDITAD 239
Query: 179 SASDKPSYNSSLVDKLID 196
K + S LVDK++D
Sbjct: 240 ILGYKDADGSRLVDKVLD 257
>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis
thaliana GN=At4g13965 PE=4 SV=2
Length = 427
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 89 SYVCVQLLQTLNILFENIR-NETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTL 147
S +C++ L+TL++ + + + NE++L L ++ +++VH++ FS + +S LK L
Sbjct: 154 SSICLKSLRTLHLHYVDFKDNESALNLLSGCPNLENLVVHRYPFSSVKTYTIAVSSLKRL 213
Query: 148 SL 149
++
Sbjct: 214 TI 215
>sp|P10581|RPOP_MAIZE Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1
Length = 1098
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 6 SWFGGGMWKP---KNPH--SLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGD 60
SWFG G KP P+ +L+T K+ V K Q + N V++ + A++LI +
Sbjct: 811 SWFGAGQDKPVVYSTPYWVTLQTYKWRKRVKMKIQYETTKNNEKEVKT--TSAKMLIPLN 868
Query: 61 QNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNIL 102
ND + K+ S F N + Q+ ++ +QL+ +N L
Sbjct: 869 DND-------IRKSSTSTFANFIHQK-DAFTAIQLVDFINKL 902
>sp|Q4ULD9|Y783_RICFE Putative ankyrin repeat protein RF_0783 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0783 PE=4 SV=1
Length = 215
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 82 ILKQRCGSYVCVQLLQT------LNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEE 135
I RCG V L + LN ++I+N ++LYY + NNHVN F+
Sbjct: 106 IEASRCGRGDMVLKLTSILNKDELNYYDKDIKN-SALYYAIKNNHVNI-----FNVLTSM 159
Query: 136 VMAYYISFLKTLSLKLNSHT----IHFFYNELRGTE 167
+ F ++ + + S IHFFYN L+G +
Sbjct: 160 TKGVDVDFEVSMEVTIISSNFNLFIHFFYNALQGIQ 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,284,271
Number of Sequences: 539616
Number of extensions: 2715807
Number of successful extensions: 7362
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7337
Number of HSP's gapped (non-prelim): 37
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)