Query psy10788
Match_columns 229
No_of_seqs 92 out of 108
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:31:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2219|consensus 100.0 4.5E-76 9.7E-81 573.0 13.4 194 1-202 1-194 (864)
2 PF09758 FPL: Uncharacterised 100.0 1.1E-59 2.4E-64 392.3 12.0 148 49-203 1-148 (149)
3 PF10257 RAI16-like: Retinoic 95.7 0.068 1.5E-06 50.0 9.0 99 67-166 2-104 (353)
4 KOG2219|consensus 70.5 5.7 0.00012 41.4 4.3 57 167-225 483-539 (864)
5 KOG2160|consensus 57.1 16 0.00034 35.1 4.3 60 59-118 151-210 (342)
6 PF08569 Mo25: Mo25-like; Int 56.0 79 0.0017 29.9 8.8 148 12-162 4-172 (335)
7 PF14225 MOR2-PAG1_C: Cell mor 50.5 68 0.0015 29.3 7.2 45 66-111 177-224 (262)
8 PF09324 DUF1981: Domain of un 48.6 27 0.00059 26.4 3.7 46 64-109 7-56 (86)
9 cd00020 ARM Armadillo/beta-cat 48.1 84 0.0018 22.6 6.2 98 42-147 21-118 (120)
10 cd07641 BAR_ASAP1 The Bin/Amph 45.9 60 0.0013 29.4 5.9 44 20-63 17-60 (215)
11 cd07640 BAR_ASAP3 The Bin/Amph 40.3 96 0.0021 28.2 6.3 59 17-77 14-72 (213)
12 KOG1566|consensus 37.6 2.4E+02 0.0052 27.4 8.8 75 11-85 3-90 (342)
13 cd02661 Peptidase_C19E A subfa 37.4 73 0.0016 27.5 5.1 51 21-72 47-98 (304)
14 PF11864 DUF3384: Domain of un 34.5 4.4E+02 0.0095 25.6 10.6 89 16-109 244-336 (464)
15 PF12348 CLASP_N: CLASP N term 30.4 1.2E+02 0.0027 25.4 5.3 71 37-110 16-88 (228)
16 PF14357 DUF4404: Domain of un 29.5 2.6E+02 0.0056 21.4 8.8 78 21-106 3-83 (85)
17 PF00443 UCH: Ubiquitin carbox 29.2 58 0.0013 26.7 3.0 53 20-72 51-105 (269)
18 PF12612 TFCD_C: Tubulin foldi 28.5 1.1E+02 0.0023 26.0 4.6 34 72-105 125-159 (193)
19 cd02663 Peptidase_C19G A subfa 27.6 74 0.0016 28.3 3.6 52 21-72 24-77 (300)
20 PF14412 AHH: A nuclease famil 27.4 1.3E+02 0.0029 22.9 4.6 43 17-59 66-108 (109)
21 PF09784 L31: Mitochondrial ri 25.4 1.2E+02 0.0026 24.6 4.1 27 8-34 5-31 (103)
22 smart00288 VHS Domain present 24.9 3.7E+02 0.008 21.6 7.8 48 64-111 70-118 (133)
23 PF11707 Npa1: Ribosome 60S bi 23.9 2.9E+02 0.0063 25.5 6.8 116 22-146 56-184 (330)
24 PRK10667 Hha toxicity attenuat 22.9 65 0.0014 26.9 2.1 19 15-33 5-23 (122)
25 PF11229 DUF3028: Protein of u 21.8 5.7E+02 0.012 26.6 8.8 131 22-154 210-355 (589)
26 TIGR03147 cyt_nit_nrfF cytochr 21.1 1.9E+02 0.004 24.2 4.5 48 25-73 35-86 (126)
27 PRK10144 formate-dependent nit 20.6 1.8E+02 0.0039 24.3 4.3 48 25-73 35-86 (126)
28 PF10757 YbaJ: Biofilm formati 20.5 78 0.0017 26.4 2.1 19 15-33 5-23 (122)
No 1
>KOG2219|consensus
Probab=100.00 E-value=4.5e-76 Score=572.97 Aligned_cols=194 Identities=71% Similarity=1.054 Sum_probs=190.9
Q ss_pred CCCcCCCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHHhHHHHHH
Q psy10788 1 MFRSRSWFGGGMWKPKNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLSFFL 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~n~fSle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~n~l~~f~ 80 (229)
|||+|||+||+ |||||+|||||||||+++|+|+++|+|.|++.+||+||+||||+|||||||+++||||+|||||++|+
T Consensus 1 mfrsrsw~g~l-~~pkn~hSLe~LkYL~~vLtKn~~VtE~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl 79 (864)
T KOG2219|consen 1 MFRSRSWSGGL-WKPKNPHSLEHLKYLYGVLTKNTTVTENNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFL 79 (864)
T ss_pred CcccccccCCC-CCCCCcccHHHHHHHHHHHhhcceecccchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 99999999986 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHHHHhhhccCCCCchhHHHHHHHHHHHHhhcccccccceee
Q psy10788 81 NILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFY 160 (229)
Q Consensus 81 ~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~lI~~~~df~deEil~yYISfLK~LSlrLn~~Ti~fFf 160 (229)
+||+++.+.+|++|+|||++||||||++||||||||||||+|.||+|+|||+|||+++|||||||++|+|||++||+|||
T Consensus 80 ~Ilrq~st~~v~VQLLQTlnIlfeNirhEtslYyLlSNnyVNsiI~hkFDfq~eEimaYYISFLktlS~KLN~hTihff~ 159 (864)
T KOG2219|consen 80 RILRQKSTVTVCVQLLQTLNILFENIRHETSLYYLLSNNYVNSIIVHKFDFQDEEIMAYYISFLKTLSGKLNKHTIHFFL 159 (864)
T ss_pred HHHhhcCCceEeHHHHHHHHHHHHhccccceeeeeecccceeeeEEEeecCCcHHHHHHHHHHHHHhhcccCcceeEEee
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccccccCCcCcCCCCCCCCchHHHHHHHhHhhhcc
Q psy10788 161 NELRGTELTQSILAPATDSASDKPSYNSSLVDKLIDIVTLSC 202 (229)
Q Consensus 161 n~~~~~el~~~i~~Pa~~~~~~~~~yne~mV~~~~~iitl~c 202 (229)
|+++++. |++..+.+|..++|+|||+|+|+||||+
T Consensus 160 Nd~t~dF-------pLyvE~ikf~nh~EsMVRiAVRtitLNV 194 (864)
T KOG2219|consen 160 NDHTNDF-------PLYVEAIKFFNHPESMVRIAVRTITLNV 194 (864)
T ss_pred ccccccc-------hhHHHHHHHhcChHHHHHHHHHheeeeE
Confidence 9999975 9999999999999999999999999998
No 2
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=100.00 E-value=1.1e-59 Score=392.28 Aligned_cols=148 Identities=61% Similarity=0.888 Sum_probs=143.6
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHHHHhhhcc
Q psy10788 49 LRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHK 128 (229)
Q Consensus 49 LR~IaEilIwGDq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~lI~~~ 128 (229)
||+|||++|||||||+++||||||+|||+.|++|++++.++.|++|+|||+|||+||+++|+|+||||||||||++|+++
T Consensus 1 lr~iaE~~iwGDq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~ 80 (149)
T PF09758_consen 1 LRSIAEILIWGDQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYP 80 (149)
T ss_pred ChhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcC
Confidence 69999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccccccceeeecccCCcccccccCCcCcCCCCCCCCchHHHHHHHhHhhhccc
Q psy10788 129 FDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNELRGTELTQSILAPATDSASDKPSYNSSLVDKLIDIVTLSCQ 203 (229)
Q Consensus 129 ~df~deEil~yYISfLK~LSlrLn~~Ti~fFfn~~~~~el~~~i~~Pa~~~~~~~~~yne~mV~~~~~iitl~c~ 203 (229)
|||+|||+++|||||||+||+|||++|++||||+++++. |+++.|.++..+.|+|||.|+|+|||||.
T Consensus 81 ~d~~~ee~l~yYIsfLK~lSlkln~~tv~fffn~~~~~F-------PL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 81 FDFSDEEVLSYYISFLKTLSLKLNKDTVQFFFNERNDSF-------PLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCceeEeEecCCCCC-------CcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999854 88899999988899999999999999984
No 3
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=95.66 E-value=0.068 Score=50.02 Aligned_cols=99 Identities=12% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHHHHh-hhccCCCC-chhHHHHHHHHH
Q psy10788 67 FDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSI-IVHKFDFS-DEEVMAYYISFL 144 (229)
Q Consensus 67 Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~l-I~~~~df~-deEil~yYISfL 144 (229)
-||+++++|+..+.++-+...+..++.++++.++.|+...+.+ -+-+.-=+--+.++ +..--.-. ++++-.-.|.||
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p-lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP-LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc-cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 4899999999999999999989999999999999999999998 11122222335566 55444333 888889999999
Q ss_pred HHHhhcc--cccccceeeecccCC
Q psy10788 145 KTLSLKL--NSHTIHFFYNELRGT 166 (229)
Q Consensus 145 K~LSlrL--n~~Ti~fFfn~~~~~ 166 (229)
-+|..|+ +++-+.|||..+...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~ 104 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQ 104 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccc
Confidence 9999888 455588999887644
No 4
>KOG2219|consensus
Probab=70.53 E-value=5.7 Score=41.39 Aligned_cols=57 Identities=35% Similarity=0.487 Sum_probs=43.9
Q ss_pred cccccccCCcCcCCCCCCCCchHHHHHHHhHhhhcccCCCceeeehHHHHHHHHHHhhh
Q psy10788 167 ELTQSILAPATDSASDKPSYNSSLVDKLIDIVTLSCQPGCRVRLVTLEVTILLLKKLVV 225 (229)
Q Consensus 167 el~~~i~~Pa~~~~~~~~~yne~mV~~~~~iitl~c~~~~~vrl~~~~~~~~~~~~~~~ 225 (229)
|-++.+.+|....+.+- |+.-+...+..||+-.-+|+.|.|+.|+|++..++.|-++
T Consensus 483 E~feq~~~p~p~~a~sg--y~~~L~e~L~~ii~~~~q~dgrir~itlelacl~l~q~~~ 539 (864)
T KOG2219|consen 483 ERFEQLFSPRPGSARSG--YDGRLSEELDWIIRRLEQPDGRIRLITLELACLLLHQHQV 539 (864)
T ss_pred HHHHHHhCCCCCccccc--ccchHHHHHHHHHHhhcCCCCceEechHHHhhHHHHHhhc
Confidence 33344445553333332 8899999999999999999999999999999999987443
No 5
>KOG2160|consensus
Probab=57.13 E-value=16 Score=35.13 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=51.6
Q ss_pred ccCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccc
Q psy10788 59 GDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSN 118 (229)
Q Consensus 59 GDq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSN 118 (229)
.=||+|.+=+.++|.+-+..+..++....+..++.++|-.+|-+|-|-.-....+.-+..
T Consensus 151 ~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 151 AVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 348999999999999999999999998888899999999999999998776666544433
No 6
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=55.99 E-value=79 Score=29.90 Aligned_cols=148 Identities=14% Similarity=0.235 Sum_probs=80.9
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhh-cccccchhhHHHHHHHHHHH--HHhccCCCc-------hHHHHHHHHhHHHHHHH
Q psy10788 12 MWKPKNPHSLETLKYLYNVLSKNQ-TVSESNRGLLVESLRSIAEI--LIWGDQNDS-------SVFDFFLEKNMLSFFLN 81 (229)
Q Consensus 12 ~~~~~n~fSle~lryL~~~L~k~~-~v~~~n~~~vvE~LR~IaEi--lIwGDq~d~-------~~Fd~F~E~n~l~~f~~ 81 (229)
||+.+.|--.|-+|.+.+.|.+-+ ..+...+...-|.=+.+.++ +++||..++ .+..-++..+.+..++.
T Consensus 4 lF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~ 83 (335)
T PF08569_consen 4 LFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIR 83 (335)
T ss_dssp --------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 566677888999999999999984 33333333333333444433 456775532 35666677788888777
Q ss_pred HHhhhcCCcchhHHHHHHHH-HHHhcCCCc--ceeeeccc-hHHHHhhhccCCCCchhHHHHHHHHHHHHh-------hc
Q psy10788 82 ILKQRCGSYVCVQLLQTLNI-LFENIRNET--SLYYLLSN-NHVNSIIVHKFDFSDEEVMAYYISFLKTLS-------LK 150 (229)
Q Consensus 82 il~~~~~~~V~~QlLQtlSI-LiqNi~~~~--sLyYlLSN-n~IN~lI~~~~df~deEil~yYISfLK~LS-------lr 150 (229)
-+..- +=..+..+-|-.+. +-+.+.++. ...|+..| +.|=+++..-|+ +.|+.-.|=+.||.-. .-
T Consensus 84 ~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~i 160 (335)
T PF08569_consen 84 NLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKII 160 (335)
T ss_dssp TGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHH
Confidence 76665 22333333333333 344455542 46799999 888888887775 7788888887776432 23
Q ss_pred ccccccceeeec
Q psy10788 151 LNSHTIHFFYNE 162 (229)
Q Consensus 151 Ln~~Ti~fFfn~ 162 (229)
|+.+-+.-||+.
T Consensus 161 L~~~~f~~ff~~ 172 (335)
T PF08569_consen 161 LYSECFWKFFKY 172 (335)
T ss_dssp HTSGGGGGHHHH
T ss_pred hCcHHHHHHHHH
Confidence 344444445544
No 7
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.50 E-value=68 Score=29.27 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=37.9
Q ss_pred HHHHHH---HHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcc
Q psy10788 66 VFDFFL---EKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETS 111 (229)
Q Consensus 66 ~Fd~F~---E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~s 111 (229)
+=|+|. +-+++.++.++|.++ ..-++.+.+|.+..+++.+.-...
T Consensus 177 l~~~f~P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~ 224 (262)
T PF14225_consen 177 LREAFFPDHEFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSP 224 (262)
T ss_pred HHHHhCchhHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCC
Confidence 344554 689999999999997 679999999999999999988754
No 8
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=48.58 E-value=27 Score=26.41 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHH----hcCCC
Q psy10788 64 SSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFE----NIRNE 109 (229)
Q Consensus 64 ~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiq----Ni~~~ 109 (229)
++...|=..+.+|.=|..|+.+.++..|+-.+++++.-|++ ||++.
T Consensus 7 ~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SG 56 (86)
T PF09324_consen 7 EELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSG 56 (86)
T ss_pred ccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 34555567899999999999888888999999999999998 67665
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=48.05 E-value=84 Score=22.59 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHHHHhccCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHH
Q psy10788 42 RGLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHV 121 (229)
Q Consensus 42 ~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~I 121 (229)
......++..++.+..- +++.-+.+.+.+++..+.+++... +..|....+.+++=+.++-. ...-.+..++-+
T Consensus 21 ~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l 93 (120)
T cd00020 21 ENVQREAAWALSNLSAG----NNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE--DNKLIVLEAGGV 93 (120)
T ss_pred HHHHHHHHHHHHHHhcC----CHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH--HHHHHHHHCCCh
Confidence 34455555555554322 367777888999999999999875 67777778887777665432 222333334444
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHH
Q psy10788 122 NSIIVHKFDFSDEEVMAYYISFLKTL 147 (229)
Q Consensus 122 N~lI~~~~df~deEil~yYISfLK~L 147 (229)
..++..- +..+.++...=...|..|
T Consensus 94 ~~l~~~l-~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 94 PKLVNLL-DSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHh
Confidence 4444432 333667766666666554
No 10
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=45.91 E-value=60 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCC
Q psy10788 20 SLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQND 63 (229)
Q Consensus 20 Sle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d 63 (229)
-|+.++.+|..+...-...-.|...+++.|+.++...+..|.++
T Consensus 17 ~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~ 60 (215)
T cd07641 17 ALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPD 60 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Confidence 36777778877777777777789999999999999999877554
No 11
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=40.33 E-value=96 Score=28.15 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHHhHHH
Q psy10788 17 NPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLS 77 (229)
Q Consensus 17 n~fSle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~n~l~ 77 (229)
|+-.|+.+|..+..+...-.-+-.|....+|+|..++.-.+.+|. +++=--|+.-.++.
T Consensus 14 d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~--~~~~t~fl~~av~t 72 (213)
T cd07640 14 DQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNN--HELSTGFLNLAVFT 72 (213)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCC--cHHHHHHHHHHHHH
Confidence 444566667777666666666667899999999999999999764 55555666655553
No 12
>KOG1566|consensus
Probab=37.58 E-value=2.4e+02 Score=27.36 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=44.7
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhhhhccc---ccchhhHH----HHHHHHHHHHHhccCCCc---hHHH---HHHHHhHHH
Q psy10788 11 GMWKPKNPHSLETLKYLYNVLSKNQTVS---ESNRGLLV----ESLRSIAEILIWGDQNDS---SVFD---FFLEKNMLS 77 (229)
Q Consensus 11 ~~~~~~n~fSle~lryL~~~L~k~~~v~---~~n~~~vv----E~LR~IaEilIwGDq~d~---~~Fd---~F~E~n~l~ 77 (229)
++|+.+++-..|-+|.+.+.|.+.+.+. ...+..++ +-++.+..++-..|-..| .+++ -|+..+++.
T Consensus 3 ~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~ 82 (342)
T KOG1566|consen 3 FLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLS 82 (342)
T ss_pred CccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchH
Confidence 3577778888999999999999887775 33444333 345556655544444433 2222 344455555
Q ss_pred HHHHHHhh
Q psy10788 78 FFLNILKQ 85 (229)
Q Consensus 78 ~f~~il~~ 85 (229)
.++.-+..
T Consensus 83 ~lI~~l~~ 90 (342)
T KOG1566|consen 83 LLIQHLPK 90 (342)
T ss_pred HHHHhhhc
Confidence 55544443
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=37.42 E-value=73 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Q psy10788 21 LETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDS-SVFDFFLE 72 (229)
Q Consensus 21 le~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~-~~Fd~F~E 72 (229)
+..|+.+...+..... ....+..+.+++..+..-+-+|+|+|. ++|.++++
T Consensus 47 ~~~l~~~~~~~~~~~~-~~~~p~~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~ 98 (304)
T cd02661 47 MCALEAHVERALASSG-PGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLD 98 (304)
T ss_pred HHHHHHHHHHHHhCCC-CccChHHHHHHHHHHHHhhcCcchhhHHHHHHHHHH
Confidence 4455565555543322 223467788999999999999999986 77777665
No 14
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=34.50 E-value=4.4e+02 Score=25.57 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCC--chH-HHHHHHHhHHHHHHHHHhhhcCCcch
Q psy10788 16 KNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQND--SSV-FDFFLEKNMLSFFLNILKQRCGSYVC 92 (229)
Q Consensus 16 ~n~fSle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d--~~~-Fd~F~E~n~l~~f~~il~~~~~~~V~ 92 (229)
+.+...+-++.||+.|...+.....|...+.-|+.-+ +.++||+..+ +.+ |.. -.+|+-|...++.. +..|.
T Consensus 244 ~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l-~~ll~~~~~~~~~~l~~~~---~~vl~sl~~al~~~-~~~v~ 318 (464)
T PF11864_consen 244 KSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFL-RMLLWGSGEQGYPSLPFSP---SSVLPSLLNALKSN-SPRVD 318 (464)
T ss_pred cCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHH-HHHHhccccCCcceecccH---HHHHHHHHHHHhCC-CCeeh
Confidence 3455678899999999544444455566666666554 4589999433 332 221 26888999999876 56788
Q ss_pred hHHHHHHHHHH-HhcCCC
Q psy10788 93 VQLLQTLNILF-ENIRNE 109 (229)
Q Consensus 93 ~QlLQtlSILi-qNi~~~ 109 (229)
..+++.+.-++ +...+.
T Consensus 319 ~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 319 YEILLLINRLLDGKYGRE 336 (464)
T ss_pred HHHHHHHHHHHhHhhhhh
Confidence 99999999999 555554
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=30.35 E-value=1.2e+02 Score=25.35 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=43.7
Q ss_pred ccccchhhHHHHHHHHHHHHHhc--cCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCc
Q psy10788 37 VSESNRGLLVESLRSIAEILIWG--DQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNET 110 (229)
Q Consensus 37 v~~~n~~~vvE~LR~IaEilIwG--Dq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~ 110 (229)
.++.|=+.-+|+|..+-.++..| ..+-+.+++.+- +++..+..-+... .+.|....+++++-+...++++.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR--QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH-----HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGG
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH--HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhH
Confidence 34556677889999999999988 222345555544 5555566655544 57889999999999999998873
No 16
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=29.54 E-value=2.6e+02 Score=21.37 Aligned_cols=78 Identities=23% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccC---CCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHH
Q psy10788 21 LETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQ---NDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQ 97 (229)
Q Consensus 21 le~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq---~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQ 97 (229)
.+.|..|+.+|.+...+++.-+..+-+..+.|-+.+-=+|. +++++=|-.-+ ....|. ..++.-.++++
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~--av~~FE------~~HP~l~~~lr 74 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE--AVERFE------ASHPKLAGILR 74 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH--HHHHHH------HhCCcHHHHHH
Confidence 36789999999999999999999999999999988887333 34444332211 122221 24555555565
Q ss_pred HHHHHHHhc
Q psy10788 98 TLNILFENI 106 (229)
Q Consensus 98 tlSILiqNi 106 (229)
-|.-.+.|+
T Consensus 75 ~i~~sLa~M 83 (85)
T PF14357_consen 75 NIMDSLANM 83 (85)
T ss_pred HHHHHHHHC
Confidence 555555554
No 17
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=29.20 E-value=58 Score=26.68 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhhhh-hcccccchhhHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Q psy10788 20 SLETLKYLYNVLSKN-QTVSESNRGLLVESLRSIAEILIWGDQNDS-SVFDFFLE 72 (229)
Q Consensus 20 Sle~lryL~~~L~k~-~~v~~~n~~~vvE~LR~IaEilIwGDq~d~-~~Fd~F~E 72 (229)
-++.++.|...+... ..........+..+++.+..-+..|+|+|. +++.++++
T Consensus 51 ~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~ 105 (269)
T PF00443_consen 51 FLQQLQNLFRSLWSSNSSDSSISPSDFINALSSINPSFSNGEQQDAHEFLSFLLD 105 (269)
T ss_dssp HHHHHHHHHHHHHSSCSSSSEEHCHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcccccceeeccccccccccccccccccccchhhhhccccc
Confidence 356677777777665 233333567788888887777778888886 55555443
No 18
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=28.46 E-value=1.1e+02 Score=26.03 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHhhh-cCCcchhHHHHHHHHHHHh
Q psy10788 72 EKNMLSFFLNILKQR-CGSYVCVQLLQTLNILFEN 105 (229)
Q Consensus 72 E~n~l~~f~~il~~~-~~~~V~~QlLQtlSILiqN 105 (229)
-..++..+.++++.. ...+|.+.+++|+..|+.+
T Consensus 125 ~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 125 LEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 356788888899887 5689999999999988876
No 19
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.61 E-value=74 Score=28.33 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhhhc-ccccchhhHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Q psy10788 21 LETLKYLYNVLSKNQT-VSESNRGLLVESLRSIAEILIWGDQNDS-SVFDFFLE 72 (229)
Q Consensus 21 le~lryL~~~L~k~~~-v~~~n~~~vvE~LR~IaEilIwGDq~d~-~~Fd~F~E 72 (229)
+..|+.|...+..... ....++..++++++...+.+.-|.|+|. +++.++++
T Consensus 24 ~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd 77 (300)
T cd02663 24 LTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLN 77 (300)
T ss_pred HHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHH
Confidence 4567777777765432 2234678899999888777888999997 88887776
No 20
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=27.45 E-value=1.3e+02 Score=22.91 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhc
Q psy10788 17 NPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWG 59 (229)
Q Consensus 17 n~fSle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwG 59 (229)
..|+-++-+++.+.|.+...-...+++.+.+.|+.|.+-+.=|
T Consensus 66 g~H~~~Y~~~V~~~L~~~~~~~~~~~~~~~~~l~~i~~~l~~~ 108 (109)
T PF14412_consen 66 GRHPNEYNKYVRERLDKIENSKKENREEFRKELQKIKNELRNG 108 (109)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcC
Confidence 5788899999999999988844557889999999998866533
No 21
>PF09784 L31: Mitochondrial ribosomal protein L31; InterPro: IPR016340 This group represents a predicted mitochondrial ribosomal protein L31, fungal type [, ].
Probab=25.42 E-value=1.2e+02 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCCCHHHHHHHHHHhhhh
Q psy10788 8 FGGGMWKPKNPHSLETLKYLYNVLSKN 34 (229)
Q Consensus 8 ~~~~~~~~~n~fSle~lryL~~~L~k~ 34 (229)
.||.+|+-+=|.|--+=..+-..|+..
T Consensus 5 ~GGlLWK~pwRlS~~qK~r~R~Rlr~V 31 (103)
T PF09784_consen 5 LGGLLWKIPWRLSSPQKARQRKRLRAV 31 (103)
T ss_pred ccceeecCCCCCChHHHHHHHHHHHHH
Confidence 689999999999977666666666665
No 22
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.90 E-value=3.7e+02 Score=21.62 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=36.4
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcCCc-chhHHHHHHHHHHHhcCCCcc
Q psy10788 64 SSVFDFFLEKNMLSFFLNILKQRCGSY-VCVQLLQTLNILFENIRNETS 111 (229)
Q Consensus 64 ~~~Fd~F~E~n~l~~f~~il~~~~~~~-V~~QlLQtlSILiqNi~~~~s 111 (229)
+.+-..++.+..+..+.++++...... |+-.+++.+--+-+..++...
T Consensus 70 ~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 118 (133)
T smart00288 70 SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPD 118 (133)
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456678889999999999999886555 888888877777666665443
No 23
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=23.88 E-value=2.9e+02 Score=25.51 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhcc-CCCchHHHHHHHHhHHHHHHHHHhhhc---CC--------
Q psy10788 22 ETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGD-QNDSSVFDFFLEKNMLSFFLNILKQRC---GS-------- 89 (229)
Q Consensus 22 e~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGD-q~d~~~Fd~F~E~n~l~~f~~il~~~~---~~-------- 89 (229)
++++.++..|...+ .....-+||-++|++-|.. ++-.++|+.| .=-+..|.+++..+. ..
T Consensus 56 ~~~k~lyr~L~~~~------~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f--d~~~~~l~kll~~~~~~~~~~~~~~~~~ 127 (330)
T PF11707_consen 56 NHLKLLYRSLSSSK------PSLTNPALRLLTAIVSFDGGALAREVLRSF--DFSLKSLPKLLTPRKKEKEKDSESSKSK 127 (330)
T ss_pred HHHHHHHHHhCcCc------HHHHHHHHHHHHHHHccCCHHHHHHHHHhc--CCchhhHHHHhccccccccccccccccC
Confidence 44666666665543 3456688999999999755 6666888877 223445566664442 11
Q ss_pred -cchhHHHHHHHHHHHhcCCCcceeeeccchHHHHhhhccCCCCchhHHHHHHHHHHH
Q psy10788 90 -YVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKT 146 (229)
Q Consensus 90 -~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~lI~~~~df~deEil~yYISfLK~ 146 (229)
.|+.-.++.+--++.+- ++...=-+|+++.+=.-+-....-++.|++.+=++.|+.
T Consensus 128 ~siR~~fI~F~Lsfl~~~-~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSG-DPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred cCHHHHHHHHHHHHHccC-CHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 77777777776666665 333344566666554444444555889999999888875
No 24
>PRK10667 Hha toxicity attenuator; Provisional
Probab=22.94 E-value=65 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q psy10788 15 PKNPHSLETLKYLYNVLSK 33 (229)
Q Consensus 15 ~~n~fSle~lryL~~~L~k 33 (229)
++.||.+.+|||||+.|-.
T Consensus 5 SPkrhDIAqLkyLCe~L~~ 23 (122)
T PRK10667 5 SPKRHDIAQLKFLCETLYH 23 (122)
T ss_pred CcccccHHHHHHHHHHHHH
Confidence 5789999999999998874
No 25
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=21.76 E-value=5.7e+02 Score=26.55 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHH------HHHH---------HHHHHhccCCCchHHHHHHHHhHHHHHHHHHhhh
Q psy10788 22 ETLKYLYNVLSKNQTVSESNRGLLVES------LRSI---------AEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQR 86 (229)
Q Consensus 22 e~lryL~~~L~k~~~v~~~n~~~vvE~------LR~I---------aEilIwGDq~d~~~Fd~F~E~n~l~~f~~il~~~ 86 (229)
|+++++|-++.--+.-.-.|...+++. +.++ ..+-.|--.--++--.-|.|.-+...|-.--+.
T Consensus 210 eEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~- 288 (589)
T PF11229_consen 210 EEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRP- 288 (589)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCC-
Confidence 889999988876666555555555432 1111 122233322222222567776666666543322
Q ss_pred cCCcchhHHHHHHHHHHHhcCCCcceeeeccchHHHHhhhccCCCCchhHHHHHHHHHHHHhhccccc
Q psy10788 87 CGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSH 154 (229)
Q Consensus 87 ~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~lI~~~~df~deEil~yYISfLK~LSlrLn~~ 154 (229)
.+..+|.-+||-++--.++=.-+.-+|-+|++---+=+=..|.+. .++-+++||++.|.||-.=|.+
T Consensus 289 ~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i-~~~eveLYi~vAkCLSEMtd~e 355 (589)
T PF11229_consen 289 SNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKI-QRNEVELYIGVAKCLSEMTDTE 355 (589)
T ss_pred CChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCcccc-cHHHHHHHHHHHHHHhhcCHHH
Confidence 367899999999887665555444677666554333222233333 4556789999999999766543
No 26
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.08 E-value=1.9e+02 Score=24.16 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHhh----hhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy10788 25 KYLYNVLS----KNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEK 73 (229)
Q Consensus 25 ryL~~~L~----k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~ 73 (229)
+.|..+|+ .++.+.++|.+.-.+.-+.|.|.+ =.-+.|+++.|||-|+
T Consensus 35 ~~L~~~LRC~vCqnqsiadS~a~iA~dmR~~Vr~~i-~~G~Sd~eI~~~~v~R 86 (126)
T TIGR03147 35 VALAKSLRCPQCQNQNLVESNSPIAYDLRHEVYSMV-NEGKSNQQIIDFMTAR 86 (126)
T ss_pred HHHHHhCCCCCCCCCChhhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHh
Confidence 34555555 588999998875555444555555 5556778899998874
No 27
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=20.62 E-value=1.8e+02 Score=24.25 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHhh----hhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy10788 25 KYLYNVLS----KNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEK 73 (229)
Q Consensus 25 ryL~~~L~----k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~ 73 (229)
+.|..+|+ .++++.++|.+.-.+.-+.|-|.+ =.-+.|+++.|||.|+
T Consensus 35 ~~L~~~LRC~vCqnqsiadSna~iA~dmR~~Vr~~i-~~G~sd~eI~~~~v~R 86 (126)
T PRK10144 35 LNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMV-AEGKSEVEIIGWMTER 86 (126)
T ss_pred HHHHHcCCCCCCCCCChhhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHh
Confidence 44555555 588999998875554444455554 5556778899998874
No 28
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=20.51 E-value=78 Score=26.45 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHHhhh
Q psy10788 15 PKNPHSLETLKYLYNVLSK 33 (229)
Q Consensus 15 ~~n~fSle~lryL~~~L~k 33 (229)
++.||.+.+|||||+.|-.
T Consensus 5 spk~~DIaqLk~LCe~L~~ 23 (122)
T PF10757_consen 5 SPKRHDIAQLKYLCESLYD 23 (122)
T ss_pred CcccccHHHHHHHHHHHHH
Confidence 5789999999999998874
Done!