Query psy10788
Match_columns 229
No_of_seqs 92 out of 108
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3t_A Ubiquitin carboxyl-term 44.6 15 0.00053 30.9 3.3 51 22-72 52-103 (355)
2 3nhe_A Ubiquitin carboxyl-term 34.2 32 0.0011 28.9 3.6 51 22-72 59-110 (348)
3 2ayn_A Ubiquitin carboxyl-term 31.8 44 0.0015 29.0 4.2 50 21-72 63-119 (404)
4 2hl7_A Cytochrome C-type bioge 26.3 89 0.003 23.1 4.4 50 23-73 19-72 (84)
5 2kw0_A CCMH protein; oxidoredu 25.6 74 0.0025 24.0 3.9 50 23-73 16-69 (90)
6 4db6_A Armadillo repeat protei 24.3 2.3E+02 0.0078 21.3 7.2 83 62-148 126-208 (210)
7 2q5z_A MAZG, hypothetical prot 24.0 1E+02 0.0035 23.1 4.5 52 9-60 11-62 (114)
8 1upk_A MO25 protein; transfera 22.5 3.8E+02 0.013 24.5 8.8 131 13-147 5-150 (341)
9 4hxt_A De novo protein OR329; 20.1 2.2E+02 0.0077 21.6 5.9 64 43-111 185-248 (252)
10 4b8j_A Importin subunit alpha- 19.8 3E+02 0.01 24.2 7.4 100 42-148 343-442 (528)
No 1
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=44.58 E-value=15 Score=30.94 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Q psy10788 22 ETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDS-SVFDFFLE 72 (229)
Q Consensus 22 e~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~-~~Fd~F~E 72 (229)
+.++.|...+.........++..+..+++....-+-.|+|+|. +++.++++
T Consensus 52 ~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd 103 (355)
T 3i3t_A 52 EAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLME 103 (355)
T ss_dssp HHHHHHHHHTSSCSSCCCBCCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhChhhCCCCccCHHHHHHHHHH
Confidence 4555566666544433445678888999988888889999997 77777765
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=34.21 E-value=32 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Q psy10788 22 ETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQNDS-SVFDFFLE 72 (229)
Q Consensus 22 e~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~-~~Fd~F~E 72 (229)
..+..|...+.........++..+..+++....-..-|+|+|. +++.++++
T Consensus 59 ~~l~~l~~~l~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd 110 (348)
T 3nhe_A 59 EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLD 110 (348)
T ss_dssp HHHHHHHHHHTTCCTTCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHH
Confidence 4455555555432233344667888888888887888899997 78877765
No 3
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=31.82 E-value=44 Score=29.00 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHh------ccCCCc-hHHHHHHH
Q psy10788 21 LETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIW------GDQNDS-SVFDFFLE 72 (229)
Q Consensus 21 le~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIw------GDq~d~-~~Fd~F~E 72 (229)
...|+.|...|.+.. ...++..++.+++....-.-| |.|+|. +++.++++
T Consensus 63 ~~~l~~lf~~l~~~~--~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd 119 (404)
T 2ayn_A 63 TAALRDLFDSMDKTS--SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR 119 (404)
T ss_dssp HHHHHHHHHHHHHHC--SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHH
Confidence 355677777776543 334577888888888777776 789996 77776665
No 4
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=26.27 E-value=89 Score=23.11 Aligned_cols=50 Identities=22% Similarity=0.404 Sum_probs=37.1
Q ss_pred HHHHHHHHhh----hhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy10788 23 TLKYLYNVLS----KNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEK 73 (229)
Q Consensus 23 ~lryL~~~L~----k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~ 73 (229)
..+.|..+|+ .++.+.++|...-.+.-+.|-|.+-=|+ .|+++.|||.++
T Consensus 19 r~~~l~~~LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~-sd~eI~~~~v~R 72 (84)
T 2hl7_A 19 RFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGK-SDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 3456666666 5889999999877776677777777775 477888888764
No 5
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=25.63 E-value=74 Score=23.98 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=37.1
Q ss_pred HHHHHHHHhh----hhhcccccchhhHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q psy10788 23 TLKYLYNVLS----KNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEK 73 (229)
Q Consensus 23 ~lryL~~~L~----k~~~v~~~n~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~ 73 (229)
..+.|..+|+ .++.+.++|...-.+.-+.|-|.+-=|+. |+++.|||.++
T Consensus 16 r~~~L~~~LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~S-d~eI~~~mv~R 69 (90)
T 2kw0_A 16 QFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKS-KKEIVDYMVAR 69 (90)
T ss_dssp HHHHHHHSSBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHh
Confidence 3455566666 58899999998777777777787777764 77888888764
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=24.29 E-value=2.3e+02 Score=21.30 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHHHHhhhccCCCCchhHHHHHH
Q psy10788 62 NDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYI 141 (229)
Q Consensus 62 ~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~IN~lI~~~~df~deEil~yYI 141 (229)
++++.-+.+.+.+.+..++++++.. +..++...+.+++-+..+ ++...-.+...+.+..++..-- -.++++...=.
T Consensus 126 ~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~ 201 (210)
T 4db6_A 126 GGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQ 201 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHH
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHH
Confidence 3455667778899999999999875 567778888877776653 1222334555555555554332 35777777777
Q ss_pred HHHHHHh
Q psy10788 142 SFLKTLS 148 (229)
Q Consensus 142 SfLK~LS 148 (229)
..|+.|+
T Consensus 202 ~aL~~l~ 208 (210)
T 4db6_A 202 EALEKLQ 208 (210)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7777665
No 7
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=23.99 E-value=1e+02 Score=23.12 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=27.3
Q ss_pred CCCcCCCCCCCCHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHhcc
Q psy10788 9 GGGMWKPKNPHSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGD 60 (229)
Q Consensus 9 ~~~~~~~~n~fSle~lryL~~~L~k~~~v~~~n~~~vvE~LR~IaEilIwGD 60 (229)
|+|+.++++.-+++.++....+.-....-...--..+.|-+.+++|.+-|++
T Consensus 11 ~~~~~~~~~~m~l~elq~~i~~~~~~~~~~~~~~~kL~eE~gEl~e~i~~~~ 62 (114)
T 2q5z_A 11 SSGLVPRGSHMKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGK 62 (114)
T ss_dssp ---------CCBHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCCcCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567888888888887665555432221111123567888888889888987
No 8
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=22.50 E-value=3.8e+02 Score=24.49 Aligned_cols=131 Identities=11% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhccc--ccc-h---hhHHHHHHHHHHHHHhccCCC---c----hHHHHHHHHhHHHHH
Q psy10788 13 WKPKNPHSLETLKYLYNVLSKNQTVS--ESN-R---GLLVESLRSIAEILIWGDQND---S----SVFDFFLEKNMLSFF 79 (229)
Q Consensus 13 ~~~~n~fSle~lryL~~~L~k~~~v~--~~n-~---~~vvE~LR~IaEilIwGDq~d---~----~~Fd~F~E~n~l~~f 79 (229)
|+.+.|-..|-+|.+.+.|.+.+..+ ..+ + +.+--.|++|-++ ++||... + .+-.-++..+.+..+
T Consensus 5 F~~~~ktP~elVr~l~d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~i-L~G~~e~ep~~e~~~qL~~ei~~~dll~~L 83 (341)
T 1upk_A 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEI-LYGTNEKEPQTEAVAQLAQELYNSGLLSTL 83 (341)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC---CTHHHHHHHHHHHHHHHHHHHH-HC-------CHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHHHHHhCHHHHH
Confidence 34455557899999999998887532 122 1 2333344445444 4577652 1 344456667888887
Q ss_pred HHHHhhhcCCcchhHHHHHHHHHHH-hcCCC-cceeeeccchHHHHhhhccCCCCchhHHHHHHHHHHHH
Q psy10788 80 LNILKQRCGSYVCVQLLQTLNILFE-NIRNE-TSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTL 147 (229)
Q Consensus 80 ~~il~~~~~~~V~~QlLQtlSILiq-Ni~~~-~sLyYlLSNn~IN~lI~~~~df~deEil~yYISfLK~L 147 (229)
+.-+..- +=..+..+-|-.+.++- .+.++ ....|+..|+.|=+++..-|+ +.|+.-.|=+.||--
T Consensus 84 i~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec 150 (341)
T 1upk_A 84 VADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 150 (341)
T ss_dssp HHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence 7777665 33344444444444332 22221 245689999888888887775 677777777777643
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=20.13 E-value=2.2e+02 Score=21.61 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHhccCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcc
Q psy10788 43 GLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETS 111 (229)
Q Consensus 43 ~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~s 111 (229)
....++++.++.+.- ++++.-+.+.+.+.+..++++++.. +..++.+.+.+++-+...-..+.-
T Consensus 185 ~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 185 EVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp HHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCCcccc
Confidence 444444555555442 3556777888999999999999865 568888999988888877666543
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=19.78 E-value=3e+02 Score=24.22 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHhccCCCchHHHHHHHHhHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhcCCCcceeeeccchHH
Q psy10788 42 RGLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHV 121 (229)
Q Consensus 42 ~~~vvE~LR~IaEilIwGDq~d~~~Fd~F~E~n~l~~f~~il~~~~~~~V~~QlLQtlSILiqNi~~~~sLyYlLSNn~I 121 (229)
.....++...|+.+.. | +++....+++.+++..+++++... ...++...+.+++-+..+- ++...-|+...+.+
T Consensus 343 ~~v~~~A~~~L~nl~~-~---~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 343 KSIKKEACWTISNITA-G---NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGG-SHDQIKYLVSEGCI 416 (528)
T ss_dssp HHHHHHHHHHHHHHHT-S---CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHC-C---CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCH
Confidence 4445556666666553 2 456677888899999999999876 6788888888888887763 23445566666666
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHHh
Q psy10788 122 NSIIVHKFDFSDEEVMAYYISFLKTLS 148 (229)
Q Consensus 122 N~lI~~~~df~deEil~yYISfLK~LS 148 (229)
..++..- +-.|+++...-...|..|.
T Consensus 417 ~~L~~lL-~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 417 KPLCDLL-ICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHGG-GCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 6666543 3367777777666666653
Done!