RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10788
         (229 letters)



>gnl|CDD|192367 pfam09758, FPL, Uncharacterized conserved protein.  This entry
           represents an N-terminal region of approximately 150
           residues of a family of proteins of unknown function. It
           contains a highly conserved FPL motif.
          Length = 149

 Score =  172 bits (437), Expect = 8e-55
 Identities = 71/114 (62%), Positives = 94/114 (82%)

Query: 49  LRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRN 108
           LR IAE LIWGD+ND   FD+FLEKN++S FL IL     S V +Q+LQT+++L +N++N
Sbjct: 1   LREIAEYLIWGDKNDDDFFDYFLEKNIMSTFLRILTNLTPSEVKIQILQTVSMLIQNLQN 60

Query: 109 ETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNE 162
           ETSLYYLLSNNH+N +I+HKFDF+DEE+++YYISFLK+LSL+LN  TI  F+N+
Sbjct: 61  ETSLYYLLSNNHLNELIIHKFDFNDEEIVSYYISFLKSLSLRLNKDTIQLFFNQ 114


>gnl|CDD|222707 pfam14357, DUF4404, Domain of unknown function (DUF4404).  This
          family of proteins is functionally uncharacterized.
          This family of proteins is found in bacteria. Proteins
          in this family are approximately 90 amino acids in
          length. There are two completely conserved residues (P
          and G) that may be functionally important.
          Length = 85

 Score = 26.4 bits (59), Expect = 4.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 22 ETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILIWGDQND 63
          E L+ L+  L +  ++ E  R LL E +  I   L   D  +
Sbjct: 4  ELLEQLHEELEQTDSLDEETRALLSELIDDIEAQLAEEDATE 45


>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
           domains.  Alanine dehydrogenase (L-AlaDH) catalyzes the
           NAD-dependent conversion of pyruvate to L-alanine via
           reductive amination. Like formate dehydrogenase and
           related enzymes, L-AlaDH is comprised of 2 domains
           connected by a long alpha helical stretch, each
           resembling a Rossmann fold NAD-binding domain. The
           NAD-binding domain is inserted within the linear
           sequence of the more divergent catalytic domain. Ligand
           binding and active site residues are found in the cleft
           between the subdomains. L-AlaDH is typically hexameric
           and is critical in carbon and nitrogen metabolism in
           micro-organisms.
          Length = 359

 Score = 27.8 bits (63), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 19  HSLETLKYLYNVLSKNQTVSESNRGLLVESLRSIAEILI 57
            +LE L+YL ++     T   SN   L E+L+  A+++I
Sbjct: 199 INLERLRYLDDIFGGRVTTLYSNPANLEEALKE-ADLVI 236


>gnl|CDD|138982 PRK12450, PRK12450, foldase protein PrsA; Reviewed.
          Length = 309

 Score = 27.0 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 145 KTLSLKLNSHTIHFFYNELRGTELTQSILAPATDSASDKPSYNSSLVDK 193
           K +S+K ++ T+  FYNE + TEL Q  +     S   +  Y + + DK
Sbjct: 31  KLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDK 79


>gnl|CDD|219937 pfam08617, CGI-121, Kinase binding protein CGI-121.  CGI-121 has
           been shown to bind to the p53-related protein kinase
           (PRPK). PRPK is a novel protein kinase which binds to
           and induces phosphorylation of the tumour suppressor
           protein p53. CGI-121 is part of a conserved protein
           complex, KEOPS. The KEOPS complex is involved in
           telomere uncapping and telomere elongation.
           Interestingly this family also include archaeal
           homologues, formerly in the DUF509 family. A structure
           for these proteins has been solved by structural
           genomics.
          Length = 146

 Score = 26.5 bits (59), Expect = 8.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 122 NSIIVHKFDFSDEEVMAYYISFLKTLSLKLNSHTIHFFYNE 162
           NS+IV K D ++E+ +   +S ++   + L+   +    +E
Sbjct: 75  NSVIVVKVDDTEEDELESLLSLVEGEQVSLDDEELSKLTDE 115


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,073,744
Number of extensions: 1002273
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 24
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)