RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10788
(229 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 8e-05
Identities = 37/254 (14%), Positives = 68/254 (26%), Gaps = 82/254 (32%)
Query: 8 FGGGM-W----KPKNPHS-LETLKYLYNVLSKNQTVSESN-------------------- 41
+ W +P + LE L+ L + N T +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 42 -----RGLLVESLRSIAEILIWGDQN----------DSSVFDF----------------- 69
LLV L ++ W N V DF
Sbjct: 240 SKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 70 FLEKNMLSFFLNILKQRCGSY---VCVQLLQTLNILFENIRNETSL--YYLLSN-NHVNS 123
+ S L L R V + L+I+ E+IR+ + + N + + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 124 IIVHKFD-FSDEEVMAYYIS---FLKTLSLKLNSHTIHFFYNELRGTELTQSILAPATDS 179
II + E + F S + + + + ++ ++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLIWFDVI-KSDVMVVV------ 408
Query: 180 ASDKPSYNSSLVDK 193
+ SLV+K
Sbjct: 409 ---NKLHKYSLVEK 419
Score = 35.6 bits (81), Expect = 0.012
Identities = 30/253 (11%), Positives = 71/253 (28%), Gaps = 93/253 (36%)
Query: 16 KNPHSLETLKYLYNVLSKNQ---------TVSESNRGLLVESLRSIAEILIWGDQNDSSV 66
+ ++ L+ L Q V N L+ +++ + S +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSMM 108
Query: 67 FDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNI----LFENIRNETSLYYLLSNNHVN 122
++E QR Y Q+ N+ + +R LL
Sbjct: 109 TRMYIE------------QRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRPAK 151
Query: 123 SIIVH------K--------FDFSDEEVMA---YYISF------------LKTLSLKLNS 153
++++ K + + M ++++ L+ L +++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 154 HTIHFFYNELRGTELTQSILAPATDSASDK-------PSYNSSLV--D-----KLIDIVT 199
N ++ + +I S + Y + L+ K +
Sbjct: 212 -------NWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 200 LSCQPGCRVRLVT 212
L C++ L+T
Sbjct: 264 L----SCKI-LLT 271
Score = 34.4 bits (78), Expect = 0.031
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 57/232 (24%)
Query: 20 SLETL-----KYLYNVLS---KNQTVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFL 71
SL L + +++ LS + + LL LIW D S V +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLS---------LIWFDVIKSDVMVV-V 408
Query: 72 EKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDF 131
K + + L + KQ S + + + L + NE +L+ + +++ D
Sbjct: 409 NK-LHKYSL-VEKQPKESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 132 SDEEVMAYYISF----LKTL----------SLKLNSHTIHFFYNELRGTELTQSILAPAT 177
+ Y+ S LK + + L+ F ++R +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNASGSIL 521
Query: 178 DSASDKPSY----------NSSLVDKLIDIVTLSCQPGCRVRLVTLEVTILL 219
++ Y LV+ ++D + P L+ + T LL
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFL-----PKIEENLICSKYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 144 LKTLSLKLNS--HTI------HFFYNELRGTELTQSILAPATDS--ASDKPSYNSSLVDK 193
+ L+L S H + F ++L+ E IL T+ A D+P+ + LV K
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 194 LIDIVTLSCQPGCRVRLVTLEVTILLLK 221
+ V+ +P + +V L L
Sbjct: 64 FLGYVSSLVEPSKVGQ--FDQVLNLCLT 89
Score = 31.9 bits (72), Expect = 0.21
Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 53/185 (28%)
Query: 31 LSKNQ---TVSESNRGLLVESLRSIAEILIWGDQNDSSVFDFFLEKNMLSFFLNILKQRC 87
L++ Q V+++N L I+ L+ G +N +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKN---------------LVV------S 380
Query: 88 GSYVCVQLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTL 147
G Q L LN+ + + L + FS+ ++ + FL +
Sbjct: 381 GP---PQSLYGLNLTLRKAKAPSGL------------DQSRIPFSERKL-KFSNRFL-PV 423
Query: 148 SLKLNSH----TIHFFYNELRGTELT---QSILAP--ATDSASDKPSYNSSLVDKLID-I 197
+ +SH +L ++ + I P T SD + S+ ++++D I
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 198 VTLSC 202
+ L
Sbjct: 484 IRLPV 488
Score = 28.9 bits (64), Expect = 1.7
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 37/124 (29%)
Query: 57 IWGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNETSLYYLL 116
+W ++ D + F + S L+I+ + L I F + + +
Sbjct: 1645 VW-NRAD----NHFKDTYGFSI-LDIVINNPVN---------LTIHFGGEKGKR-----I 1684
Query: 117 SNNHVNSIIVHKFD-FSDEEVMAYYISFLKTLSLKLNSHTIHFFYN---ELRGTELTQSI 172
N+ F+ D ++ I K ++ S+T F + L T+ TQ
Sbjct: 1685 RENY----SAMIFETIVDGKLKTEKI--FKEINEHSTSYT---FRSEKGLLSATQFTQ-- 1733
Query: 173 LAPA 176
PA
Sbjct: 1734 --PA 1735
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.075
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 30/51 (58%)
Query: 144 LKTL--SLKLNSHTIHFFYNELRGTELTQSILAPATDSASDKPSY--NSSL 190
LK L SLKL Y A DSA P+ +++
Sbjct: 22 LKKLQASLKL--------Y---------------ADDSA---PALAIKATM 46
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 28.7 bits (64), Expect = 1.3
Identities = 3/64 (4%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 94 QLLQTLNILFENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNS 153
+ + + + + + + +++E+ ++Y + ++
Sbjct: 109 SSGMPFELWVTELPYQ------IKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRY 162
Query: 154 HTIH 157
I
Sbjct: 163 RIIS 166
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 27.0 bits (60), Expect = 5.5
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 58 WGDQNDSSVFDFFLEKNMLSFFLNILKQRCGSYVCVQLLQTLNILFENIRNET--SLYYL 115
+ D DS +++L K +L + + + +N ++ I + SLY +
Sbjct: 479 YMDYFDS-AMNYYLRKAILELLIY------KRIDLNEFISRINNVYAYIPHYKALSLYNM 531
Query: 116 LSN 118
L +
Sbjct: 532 LGS 534
>3hwp_A PHLG; beta-GRIP fold, hydrolase; 2.00A {Pseudomonas fluorescens}
Length = 302
Score = 26.7 bits (58), Expect = 6.1
Identities = 7/46 (15%), Positives = 11/46 (23%)
Query: 1 MFRSRSWFGGGMWKPKNPHSLETLKYLYNVLSKNQTVSESNRGLLV 46
SR W G + P + + L + V
Sbjct: 232 YLTSRYWVGAHPSMARFPGAEKAASLLKENGFGEAELETLAYEFAV 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.395
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,214,251
Number of extensions: 169988
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 23
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)