BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10790
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
          Length = 298

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE+SP+VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVL
Sbjct: 24  LDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           EEA  RLN L+  +F+++  EL  +D+YQ+  ++S 
Sbjct: 84  EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSP 119


>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
 pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
 pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
 pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
          Length = 290

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAD-KEYSE 127
            RA +   +EY E
Sbjct: 117 HRAITTGLQEYVE 129


>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
           Truncated Translin And Trax
          Length = 269

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLEEAESR 91
           +VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVLEEA  R
Sbjct: 1   IVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQR 60

Query: 92  LNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
           LN L+  +F+++  EL  +D+YQ+  ++S 
Sbjct: 61  LNKLIAVNFRAVALELRDQDVYQFRSSYSP 90


>pdb|1D2I|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
           Complexed With Dna 16-Mer
 pdb|1D2I|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
           Complexed With Dna 16-Mer
 pdb|1DFM|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
           Complexed With Dna 16-Mer
 pdb|1DFM|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
           Complexed With Dna 16-Mer
 pdb|1ES8|A Chain A, Crystal Structure Of Free Bglii
          Length = 223

 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 10  RRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
           +R D   T+++ G +  L++       +F  Y  ++N    + E   K + DI  E  +V
Sbjct: 74  KRFDFLGTDIDFGKRDTLVE------VQFSNYPFLLNNTV-RSELFHKSNXDIDEEGXKV 126

Query: 70  IFLL---HTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVG--EDLYQYIRAFS---A 121
             ++   H    S++    E+A+++LN L + +   +   LVG  ED    I   S   A
Sbjct: 127 AIIITKGHXFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYA 186

Query: 122 DKEYS 126
           DK YS
Sbjct: 187 DKRYS 191


>pdb|4FUS|A Chain A, The X-Ray Structure Of Hahella Chejuensis Family 48
           Glycosyl Hydrolase
          Length = 695

 Score = 25.8 bits (55), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 66  SKRVIFLLHTLLRSDT-QKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKE 124
           +K ++F      + DT Q   +EA  +L   M THFK+ K     E    Y R F  DK 
Sbjct: 528 AKALMFYAAAAEKYDTPQNEAKEASKKLLDAMWTHFKTPKGLAAPEKRGDYARFF--DKV 585

Query: 125 Y 125
           Y
Sbjct: 586 Y 586


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,874
Number of Sequences: 62578
Number of extensions: 105310
Number of successful extensions: 272
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 8
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)