BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10790
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1
SV=1
Length = 290
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
GFR +R+ D N GK +SPV+ F+ + ++T+ DKYERLVK+SRDIT+
Sbjct: 9 GFR-KRKHDNFPHNQRREGKD--ASSSSPVMLAFKSFQQELDTRHDKYERLVKLSRDITV 65
Query: 65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
ESKR IFLLH + + D +++L E+ES+L+ + Q + + EL GED++Q+ RA +
Sbjct: 66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKMLQ-VAQELSGEDMHQFHRAVTTGL 124
Query: 123 KEYSE 127
+EY E
Sbjct: 125 QEYVE 129
>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2
SV=1
Length = 290
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR +R+ D N GK ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH + + D + +L E+E +L+ + Q F+ + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAD-KEYSE 127
RA + +EY E
Sbjct: 117 HRAITTGLQEYVE 129
>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1
Length = 290
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR +R+ D N GK ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH + + D + +L E+E +L+ + Q F+ + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAD-KEYSE 127
RA + +EY E
Sbjct: 117 HRAITTGLQEYVE 129
>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1
Length = 290
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR +R+ D N GK ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH + + D + +L E+E +L+ + Q F+ + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAD-KEYSE 127
RA + +EY E
Sbjct: 117 HRAITTGLQEYVE 129
>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1
Length = 290
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
GFR +R+ D N GK + +SPV+ F+ + ++ + DKYERLVK+SRDIT+
Sbjct: 9 GFR-KRKHDTFPHNQRREGKDASL--SSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65
Query: 65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAD- 122
ESKR IFLLH + + D +++L E+ES+L+ + Q + + EL GED++Q+ RA +
Sbjct: 66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKILQ-VAQELSGEDMHQFHRAVTTGL 124
Query: 123 KEYSE 127
+EY E
Sbjct: 125 QEYVE 129
>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1
Length = 231
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 36 QEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNIL 95
+EF + + QDK E+++++SR+ITI+SKR+IFLLH SD + ++ + R +I
Sbjct: 3 EEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFD-RTSIF 61
Query: 96 ---MQTHFKSIKAELVG 109
+ +S+K EL G
Sbjct: 62 EKKIHKELESLKRELAG 78
>sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=uvrA PE=3 SV=1
Length = 1787
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 17 TNVNIGGKKNLIDEN-SPVVQEFRKYAIIMNTK-QDKYERLVKISRDITIESKRVIFLLH 74
T V+ GK +LI++ P V+EF + N Q K RLV I+RD+ S+R I L +
Sbjct: 624 TGVSGSGKSSLINDTLVPCVEEFIEQGSCPNLAVQGKLSRLVHINRDLPGRSQRSISLTY 683
Query: 75 TLLRSDTQKVL-EEAESRLNILMQTHF 100
+ +++ E+ + L ++HF
Sbjct: 684 IKAFDELRQLFAEQPRCKPLGLTKSHF 710
>sp|Q7TNB8|SBNO2_MOUSE Protein strawberry notch homolog 2 OS=Mus musculus GN=Sbno2 PE=2
SV=1
Length = 1349
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 14 QSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLL 73
Q++ + + +K+L + Q F KY I K RLV++++ K V+ L
Sbjct: 514 QAADWIGLESRKSLWGQFWSAHQRFFKYLCIAA----KVHRLVELAQQELSRDKCVVIGL 569
Query: 74 HTLLRSDTQKVLEEAESRLNI-----------LMQTHFKS 102
+ + T++VL+E E RL+ L+Q HF S
Sbjct: 570 QSTGEARTREVLDENEGRLDCFVSAAEGVFLSLIQKHFPS 609
>sp|Q45488|T2B2_BACIU Type-2 restriction enzyme BglII OS=Bacillus subtilis GN=bglIIR PE=1
SV=1
Length = 223
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 10 RRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
+R D T+++ G + L++ +F Y ++N + E K + DI E +V
Sbjct: 74 KRFDFLGTDIDFGKRDTLVE------VQFSNYPFLLNNTV-RSELFHKSNMDIDEEGMKV 126
Query: 70 IFLL---HTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVG--EDLYQYIRAFS---A 121
++ H S++ E+A+++LN L + + + LVG ED I S A
Sbjct: 127 AIIITKGHMFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYA 186
Query: 122 DKEYS 126
DK YS
Sbjct: 187 DKRYS 191
>sp|O84337|UVRA_CHLTR UvrABC system protein A OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=uvrA PE=3 SV=1
Length = 1786
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 17 TNVNIGGKKNLIDEN-SPVVQEFRKYAIIMN-TKQDKYERLVKISRDITIESKRVIFLLH 74
T V+ GK +LI++ P V+EF + + Q RLV I+RD+ S+R I L +
Sbjct: 624 TGVSGSGKSSLINDTLVPCVEEFIEQGFCSTLSIQGALSRLVHINRDLPGRSQRSIPLTY 683
Query: 75 TLLRSDTQKVL-EEAESRLNILMQTHF 100
+ +++ E+ + L ++HF
Sbjct: 684 IKAFDEVRQLFAEQPRCKTLGLTKSHF 710
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,204,910
Number of Sequences: 539616
Number of extensions: 1411097
Number of successful extensions: 5048
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 5035
Number of HSP's gapped (non-prelim): 43
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)