Query psy10790
Match_columns 127
No_of_seqs 102 out of 172
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:35:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 2E-36 6.8E-41 247.2 10.5 119 3-125 7-126 (290)
2 3axj_B TRAX, translin associat 100.0 2.1E-31 7.2E-36 218.3 9.2 100 26-125 22-123 (298)
3 3axj_A GM27569P, translin; tra 99.9 2E-27 6.8E-32 190.5 7.2 94 31-125 17-112 (249)
4 1j1j_A Translin; testis/brain 99.9 5.3E-27 1.8E-31 187.0 9.4 94 31-125 12-109 (240)
5 1gak_A SP18, fertilization pro 86.9 0.35 1.2E-05 35.5 2.4 33 52-87 53-85 (141)
6 1use_A VAsp, vasodilator-stimu 33.8 75 0.0026 19.0 4.2 28 81-108 13-40 (45)
7 3f31_A Spectrin alpha chain, b 30.9 1.3E+02 0.0044 20.6 6.3 57 34-106 83-139 (149)
8 3qf7_D MRE11; ABC-ATPase, ATPa 30.8 75 0.0026 19.1 3.8 33 36-68 8-40 (50)
9 3lbx_A Spectrin alpha chain, e 30.2 1.4E+02 0.0048 20.8 6.7 58 33-106 92-149 (161)
10 3dyj_A Talin-1; helix bundles, 29.3 1.6E+02 0.0054 24.2 6.9 64 46-110 266-332 (332)
11 3uun_A Dystrophin; triple heli 29.2 1.1E+02 0.0037 19.2 8.6 32 33-64 40-71 (119)
12 1wlx_A Alpha-actinin 4; three- 27.4 1.1E+02 0.0038 21.7 5.0 32 33-64 49-80 (129)
13 3uul_A Utrophin; spectrin repe 25.1 1.3E+02 0.0046 18.9 8.4 30 34-63 41-70 (118)
14 1tdp_A Carnobacteriocin B2 imm 23.1 62 0.0021 22.8 2.9 37 29-65 22-61 (111)
15 3o6x_A Glutamine synthetase; t 22.5 22 0.00077 32.3 0.6 39 34-72 493-535 (729)
16 2fu2_A Hypothetical protein SP 21.2 72 0.0025 21.4 2.9 39 28-66 20-58 (102)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=2e-36 Score=247.16 Aligned_cols=119 Identities=40% Similarity=0.673 Sum_probs=92.6
Q ss_pred CcccccccCCCCCCCCcCCCCcccccCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC-CCh
Q psy10790 3 NRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDT 81 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~-~~~ 81 (127)
++|||+|| |+++++|.++.++. +++++||++||++|+++||++||+||||||+|||||++||++||+|||+++ +++
T Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~ 83 (290)
T 3qb5_K 7 SGGFRKRK-HDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDM 83 (290)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred CCccccCC-CCCCccCCCccccC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 57999999 66688888766654 789999999999999999999999999999999999999999999999987 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhccccCccc
Q psy10790 82 QKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADKEY 125 (127)
Q Consensus 82 ~~i~~ea~~~l~~I~~~~l~~ia~el~g~~~yrY~r~~s~Glq~ 125 (127)
+++|++|+++|++|++ +|..|+++|++.++|+|+++|++|||+
T Consensus 84 ~~il~ea~~~L~~i~~-~~~~La~~l~~~~~yry~~~~s~~lQE 126 (290)
T 3qb5_K 84 EDILTESEIKLDGVRQ-KIFQVAQELSGEDMHQFHRAITTGLQE 126 (290)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHSSSCSTTTGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 9999999999999987 999999999999999999999999996
No 2
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=99.97 E-value=2.1e-31 Score=218.30 Aligned_cols=100 Identities=47% Similarity=0.755 Sum_probs=95.1
Q ss_pred cccCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHH
Q psy10790 26 NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSI 103 (127)
Q Consensus 26 ~~~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~--~~~~~i~~ea~~~l~~I~~~~l~~i 103 (127)
.++++++||.+||..|+++||++||+||||+|+|||||++||++||+|||+++ .+.+++|++|+++|.+|+.++|..|
T Consensus 22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l 101 (298)
T 3axj_B 22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV 101 (298)
T ss_dssp -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999997 7789999999999999987688999
Q ss_pred hhhhccCCchhhhhccccCccc
Q psy10790 104 KAELVGEDLYQYIRAFSADKEY 125 (127)
Q Consensus 104 a~el~g~~~yrY~r~~s~Glq~ 125 (127)
|++|++.++|+|+++|++|||+
T Consensus 102 a~~l~~~~~y~y~~~~s~~lQE 123 (298)
T 3axj_B 102 ALELRDQDVYQFRSSYSPGLQE 123 (298)
T ss_dssp HHHTTTSCTTTTHHHHHHHHHH
T ss_pred HHHcCccCHHHHHhccCHHHHH
Confidence 9999999999999999999996
No 3
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=99.94 E-value=2e-27 Score=190.46 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10790 31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELV 108 (127)
Q Consensus 31 ~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~--~~~~~i~~ea~~~l~~I~~~~l~~ia~el~ 108 (127)
++++.+||..|+++||++||+||||+|+|||||+.||++||+|||+++ .+.+++|++|+++|+++++ ++..|+++++
T Consensus 17 ~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~ 95 (249)
T 3axj_A 17 NFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVP 95 (249)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999985 4578999999999999998 8999999999
Q ss_pred cCCchhhhhccccCccc
Q psy10790 109 GEDLYQYIRAFSADKEY 125 (127)
Q Consensus 109 g~~~yrY~r~~s~Glq~ 125 (127)
+.++|+|+++|++|+|+
T Consensus 96 ~~~~yrY~~~~s~~lQE 112 (249)
T 3axj_A 96 AGQYYRYSDHWTFITQR 112 (249)
T ss_dssp TTCHHHHGGGTHHHHHH
T ss_pred cCchHHHhhhccHHHHH
Confidence 99999999999999996
No 4
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=99.94 E-value=5.3e-27 Score=187.04 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccC----CChHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10790 31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAE 106 (127)
Q Consensus 31 ~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~----~~~~~i~~ea~~~l~~I~~~~l~~ia~e 106 (127)
++|+.++|+.|+++||++||+||||+|+|||||+.||++||+|||+++ ++.+++|++|+++|++++. ++..|+++
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~ 90 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK 90 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 689999999999999999999999999999999999999999999982 5688999999999999998 99999999
Q ss_pred hccCCchhhhhccccCccc
Q psy10790 107 LVGEDLYQYIRAFSADKEY 125 (127)
Q Consensus 107 l~g~~~yrY~r~~s~Glq~ 125 (127)
+++.++|+|+++|++|+|+
T Consensus 91 l~~~~~yrY~~~~s~~lQE 109 (240)
T 1j1j_A 91 FPAEQYYRFHEHWRFVLQR 109 (240)
T ss_dssp SCGGGHHHHGGGTHHHHHH
T ss_pred cccchHHHHhccccHHHHH
Confidence 9999999999999999996
No 5
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=86.88 E-value=0.35 Score=35.54 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=26.1
Q ss_pred HHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHH
Q psy10790 52 YERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEE 87 (127)
Q Consensus 52 RERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~e 87 (127)
|||+++.|+|-++.|||||.+=|+ +...+.++.
T Consensus 53 reRlm~~C~~y~~~Skkii~L~~~---~lNkk~f~k 85 (141)
T 1gak_A 53 RERMMRYCMDYARYSKKILQLKHL---PVNKKTLTK 85 (141)
T ss_dssp HHHHHHBHHHHHHHHHHHHHHTTC---CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---cccHHHHHH
Confidence 899999999999999999988666 334444443
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.82 E-value=75 Score=18.99 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10790 81 TQKVLEEAESRLNILMQTHFKSIKAELV 108 (127)
Q Consensus 81 ~~~i~~ea~~~l~~I~~~~l~~ia~el~ 108 (127)
+++++.|.+..+..+++..+..|..||.
T Consensus 13 KqEIL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887777767777777763
No 7
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=30.91 E-value=1.3e+02 Score=20.59 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10790 34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106 (127)
Q Consensus 34 v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~ea~~~l~~I~~~~l~~ia~e 106 (127)
...-+..|..+|.+++++-+.|.+..+.+-... + .. ....+.+++++.. .|..|...
T Consensus 83 ~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~----------~-~~----~~~I~~rl~~l~~-~W~~L~~~ 139 (149)
T 3f31_A 83 KLQKHQAFEAEVQANSGAIVKLDETGNLMISEG----------H-FA----SETIRTRLMELHR-QWELLLEK 139 (149)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT----------C-TT----HHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------C-Cc----HHHHHHHHHHHHH-HHHHHHHH
Confidence 445678999999999999999998888753321 1 11 1245666777776 66665543
No 8
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=30.77 E-value=75 Score=19.08 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHH
Q psy10790 36 QEFRKYAIIMNTKQDKYERLVKISRDITIESKR 68 (127)
Q Consensus 36 ~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKk 68 (127)
..|+-|.++|-..-.-.|.++|+--++--+-|+
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkk 40 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKK 40 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 358888888888888889999988776655554
No 9
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=30.18 E-value=1.4e+02 Score=20.82 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10790 33 PVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106 (127)
Q Consensus 33 ~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~~~~~~~i~~ea~~~l~~I~~~~l~~ia~e 106 (127)
....-...|..+|.+++++-+.|.+..+.+-.. .+ ......+.+++++.. .|..|...
T Consensus 92 ~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~~--------------~~-~~~~~I~~rl~eL~~-~W~~L~~~ 149 (161)
T 3lbx_A 92 GKYQKHQSLEAEVQTKSRLMSELEKTREERFTM--------------GH-SAHEETKAHIEELRH-LWDLLLEL 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--------------TC-TTHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CC-CchHHHHHHHHHHHH-HHHHHHHH
Confidence 345678999999999999999998888763211 11 112345666777776 66665443
No 10
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=29.25 E-value=1.6e+02 Score=24.21 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=42.6
Q ss_pred hhhhhHHHHHHHHHhHhhHhHHHHHHHHhhcc-CCChH--HHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy10790 46 NTKQDKYERLVKISRDITIESKRVIFLLHTLL-RSDTQ--KVLEEAESRLNILMQTHFKSIKAELVGE 110 (127)
Q Consensus 46 D~~hDrRERIiK~SRDIT~~SKkiIF~LhRi~-~~~~~--~i~~ea~~~l~~I~~~~l~~ia~el~g~ 110 (127)
|...|.|-++....+|+....++++-.++-+. .|.++ .-+.++-.+..+.-. .+..++..|+|.
T Consensus 266 ~~~~e~r~~~~~~~k~~a~~~~~LL~~v~~~~~~P~~~~k~~L~~~Sr~VA~aVt-eLV~aa~~lkG~ 332 (332)
T 3dyj_A 266 EVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVT-ELIQAAEAMKGT 332 (332)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHTTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCC
Confidence 44678899999999999999999987665443 24332 224455555555333 477888888873
No 11
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=29.17 E-value=1.1e+02 Score=19.25 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhH
Q psy10790 33 PVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64 (127)
Q Consensus 33 ~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~ 64 (127)
....-+..|..+|+.+++.-+.|...+..+..
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34466789999999999999999988887643
No 12
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=27.43 E-value=1.1e+02 Score=21.74 Aligned_cols=32 Identities=6% Similarity=0.227 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhH
Q psy10790 33 PVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64 (127)
Q Consensus 33 ~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~ 64 (127)
.....++.|...|.+.++.++.|+.+.+.|..
T Consensus 49 ~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~ 80 (129)
T 1wlx_A 49 GLISAHDQFKSTLPDADREREAILAIHKEAQR 80 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999988777654
No 13
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=25.12 E-value=1.3e+02 Score=18.90 Aligned_cols=30 Identities=3% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhHhh
Q psy10790 34 VVQEFRKYAIIMNTKQDKYERLVKISRDIT 63 (127)
Q Consensus 34 v~~~F~~fr~eLD~~hDrRERIiK~SRDIT 63 (127)
...-+..|..+|+.+++.-+.|......+.
T Consensus 41 ~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 41 QFATHETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999988887753
No 14
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=23.11 E-value=62 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHHHHHHhhhhh---HHHHHHHHHhHhhHh
Q psy10790 29 DENSPVVQEFRKYAIIMNTKQD---KYERLVKISRDITIE 65 (127)
Q Consensus 29 ~~~~~v~~~F~~fr~eLD~~hD---rRERIiK~SRDIT~~ 65 (127)
..+..+.++-..+..+|++..| --+=..|+|++|...
T Consensus 22 k~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y 61 (111)
T 1tdp_A 22 KANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSY 61 (111)
T ss_dssp HSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHH
Confidence 3455667788899999999998 888888999887543
No 15
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=22.45 E-value=22 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhh----hhHHHHHHHHHhHhhHhHHHHHHH
Q psy10790 34 VVQEFRKYAIIMNTK----QDKYERLVKISRDITIESKRVIFL 72 (127)
Q Consensus 34 v~~~F~~fr~eLD~~----hDrRERIiK~SRDIT~~SKkiIF~ 72 (127)
+-..+..|.+.|+.. .|..+.|.++.|++-..+|+|||-
T Consensus 493 vA~~L~gi~~~Le~~~~~~~~~~~a~~~~~~~~~~~h~~i~F~ 535 (729)
T 3o6x_A 493 MANQLNEFKASVDKLMEEGIGKDEAIFRILKENIIASELIRFE 535 (729)
T ss_dssp HHHHHHHHHHHTCC--------CCTHHHHHHHHHHHHGGGEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHcCCEEeC
Confidence 446788999999986 678888999999999999999993
No 16
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=21.25 E-value=72 Score=21.36 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=32.6
Q ss_pred cCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhHhhHhH
Q psy10790 28 IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIES 66 (127)
Q Consensus 28 ~~~~~~v~~~F~~fr~eLD~~hDrRERIiK~SRDIT~~S 66 (127)
|..+..+..++..+.+.||...+-..-..+++++|...+
T Consensus 20 v~~~~~L~~~il~aa~~L~k~~n~~~va~kL~~~i~~Yl 58 (102)
T 2fu2_A 20 IQADDYFRQAIFELASQLEKEGMSSLLATKIDSLINQYI 58 (102)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 445678888888888999998888888899999988776
Done!