RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10790
         (127 letters)



>gnl|CDD|202084 pfam01997, Translin, Translin family.  Members of this family
           include Translin that interacts with DNA and forms a
           ring around the DNA. This family also includes human
           translin-associated protein X, which was found to
           interact with translin with yeast two-hybrid screen.
          Length = 187

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 49  QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELV 108
            D  E L+KISRDIT  SK+ IF LH     + +++L+EA+  L          +K  L 
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELL--------AKLKELLK 52

Query: 109 GEDLYQYIRAFS-ADKEYSE 127
           G   Y+Y  A+S A +EY E
Sbjct: 53  GHPYYRYSGAWSNALQEYVE 72


>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin
           family [Translation, ribosomal structure and
           biogenesis].
          Length = 204

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 47  TKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106
            K    E  +K+SR+I   S   IFLLH       +   EEAE +L        + +K  
Sbjct: 14  EKDKAREEALKLSREIVRLSGEAIFLLH-------RGDFEEAEKKLKK-ASEAVEKLKRL 65

Query: 107 LVG-EDLYQYIRAFSADKEYSE 127
           L G  +LY      +A +EY E
Sbjct: 66  LAGFPELYFAGFVTTALQEYVE 87


>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein;
           Provisional.
          Length = 204

 Score = 32.2 bits (74), Expect = 0.048
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 48  KQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAEL 107
           K +  E  +K+SR+I   S   I  +H   R D     EEAE  L    +   K +K  L
Sbjct: 16  KDEAREEALKLSREIVRLSGDAIRAIH---RGD----FEEAEKLLKE-AEELVKELKELL 67

Query: 108 VG-EDLYQYIRAFSADKEYSE 127
               +LY      +A +EY E
Sbjct: 68  KDHPELYYAGYVGTALQEYVE 88


>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 27.9 bits (62), Expect = 1.9
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 17  TNVNIGGKKNLIDEN-SPVVQEF--RKYAIIMNTKQDKYERLVKISRDITIESKRVIFLL 73
           T V+  GK +LI++   P V+EF  + +   ++ +     RLV I+RD+   S+R I L 
Sbjct: 627 TGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLT 686

Query: 74  HTLLRSDTQKVL-EEAESRLNILMQTHF 100
           +     D +++  E+  S+   L ++HF
Sbjct: 687 YIKAFDDLRELFAEQPRSKRLGLTKSHF 714


>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
          Length = 419

 Score = 27.1 bits (60), Expect = 3.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 75  TLLRSDTQKVLEE 87
           T++RSDTQ+ LEE
Sbjct: 210 TVIRSDTQRELEE 222


>gnl|CDD|133855 PHA00147, PHA00147, upper collar protein.
          Length = 308

 Score = 25.9 bits (57), Expect = 7.2
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 17  TNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVK---ISRDITIESKRVIFL 72
           T+      K L  + + V  E   +  I N   +K ER+V     S +  IE+   +FL
Sbjct: 201 TDAPYVADK-LNAQKNAVWNEAMTFLGIKNANSEKKERMVVSEVSSNNGQIEASGEVFL 258


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,255,269
Number of extensions: 542882
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 32
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)