RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10790
(127 letters)
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX
heterodimer, passenger RNA cleavage, RNAse, DN protein;
2.10A {Drosophila melanogaster} PDB: 3riu_C
Length = 298
Score = 77.6 bits (190), Expect = 2e-18
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 1 MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISR 60
M G R + +DE+SP+VQ+FR Y+ + K D++ER+VK+SR
Sbjct: 1 MPKNGGAGHRNTAPRKRQI----PAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSR 56
Query: 61 DITIESKRVIFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRA 118
DITIESKR+IFLLH++ + + +KVLEEA RLN L+ +F+++ EL +D+YQ+ +
Sbjct: 57 DITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSS 116
Query: 119 FSA 121
+S
Sbjct: 117 YSP 119
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease,
hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Length = 290
Score = 74.8 bits (183), Expect = 2e-17
Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR R+ + + ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFRKRKHDNFPHNQ---RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLH-TLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH D + +L E+E +L+ + + + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV-RQKIFQVAQELSGEDMHQF 116
Query: 116 IRAFS-ADKEYSE 127
RA + +EY E
Sbjct: 117 HRAITTGLQEYVE 129
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 66.3 bits (161), Expect = 2e-14
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 29 DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLE 86
N + F Y ++ +Q+ E + + R+I SK L + S
Sbjct: 15 MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACG 74
Query: 87 EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS-ADKEYSE 127
A ++ L ++ + + Y+Y ++ +
Sbjct: 75 LARKQVE-LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIF 115
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein,
RNA protein, DNA binding protein; 2.20A {Homo sapiens}
SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Length = 240
Score = 63.9 bits (155), Expect = 1e-13
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 22 GGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLH----TLL 77
G + + V + F + + +QD E + K+ + + ++ ++ LL
Sbjct: 3 GSHHHHHHGSMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAG 62
Query: 78 RSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
D K +A ++TH S+K + E Y++ +
Sbjct: 63 FQDIPKRCLKAREHFGT-VKTHLTSLKTKFPAEQYYRFHEHWR 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 7e-04
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 3 NRGFRDRR-RKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRD 61
+ F +++ R D ++ N + G N + Q+ + Y + KYERLV D
Sbjct: 499 DFRFLEQKIRHDSTAWNAS-GSILNTL-------QQLKFYKPYICDNDPKYERLVNAILD 550
Query: 62 --ITIESKRVIF----LLHTLLRSDTQKVLEEAESRL 92
IE + LL L ++ + + EEA ++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 28.3 bits (62), Expect = 0.77
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 29/128 (22%)
Query: 11 RKDQSSTNVNI----G-GKKNLIDE--NSPVVQEFRKYAII-MNTKQDKYERLVKISRDI 62
+ + + NV I G GK + + S VQ + I +N K V +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----L 199
Query: 63 TIESKRVIFLLHTLLRSDTQKV---------LEEAESRLNILMQTHFKSIKAELVGEDLY 113
+ K LL+ + + T + + ++ L L+++ LV ++
Sbjct: 200 EMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQ 254
Query: 114 --QYIRAF 119
+ AF
Sbjct: 255 NAKAWNAF 262
Score = 26.0 bits (56), Expect = 4.6
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNI 94
VQ+ K + +K++ + ++ ++ + L TLL + V + E L I
Sbjct: 38 VQDMPKSIL---SKEE-IDHIIMSKDAVS----GTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 95 ----LMQTHFKSIKAELVGEDLYQYIR 117
LM + + +Y R
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQR 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.002
Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 59/148 (39%)
Query: 1 MSNRGFR--DRRRKDQSSTNVNIGGKK-NLIDENSPVVQEFRKY-AIIMNTKQDKYERLV 56
GF D + + ++ GG+K I EN Y A+I T D +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---------YSAMIFETIVDGKLKTE 1704
Query: 57 KISRDITIESKRVIF------LLHTLLRSDTQ-----------KVLEEAESRLNILMQT- 98
KI ++I S F L T TQ + L+ L+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALTLMEKAAFEDLKSKG-----LIPAD 1756
Query: 99 -----HFKSIKAELVGEDLYQYIRAFSA 121
H S +GE ++A
Sbjct: 1757 ATFAGH--S-----LGE--------YAA 1769
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 29.4 bits (66), Expect = 0.28
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 43 IIMNTKQDKYERLVKISRDITIESKRVIFLLH-TLLRSDTQKVLEEA--ESRLNILMQTH 99
++N+ E + K + KR I D K+ + R+N++MQT
Sbjct: 509 FVLNSPWSSLEDMDK---HLPSGIKRTIANKKLKFYNIDAVKIATDVGLGGRINMIMQTA 565
Query: 100 FKSIKAELVGEDLYQYIRAFSADKEYS 126
F + L E ++ S K Y
Sbjct: 566 FFKLAGVLPFEKAVDLLKK-SIHKAYG 591
>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor;
HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A
Length = 115
Score = 27.7 bits (61), Expect = 0.59
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 21 IGGKKNLIDENSPVVQEFRKYAIIMNTKQ----DKYERLVKISR 60
GG + +++ P E YA + Q ++ +V++ +
Sbjct: 6 RGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMK 49
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold,
cystatin/monellin superfamily, phytocystatin family;
NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Length = 102
Score = 26.4 bits (58), Expect = 1.4
Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 21 IGGKKNLIDENSPVVQEFRKYAIIMNTKQD----KYERLVK 57
+GG + + +EN + + ++A+ + K+ ++E+LV
Sbjct: 9 LGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVS 49
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 26.1 bits (58), Expect = 3.6
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 69 VIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSADK 123
V+ L S+ K + E LN+++ E V E +Y+ R ++ K
Sbjct: 94 VVDLKA-FFYSNGDK---KDEVFLNLVL---------EYVPETVYRASRHYAKLK 135
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 25.3 bits (56), Expect = 5.8
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 106 ELVGEDLYQYIRAFSADK 123
E V + L++ R + +
Sbjct: 106 EYVPDTLHRCCRNYYRRQ 123
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 25.5 bits (56), Expect = 7.0
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 106 ELVGEDLYQYIRAFSADK 123
E V + L++ +++F
Sbjct: 118 EYVPDTLHKVLKSFIRSG 135
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 25.1 bits (55), Expect = 7.4
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 106 ELVGEDLYQYIRAFSADK 123
+ V E +Y+ R +S K
Sbjct: 133 DYVPETVYRVARHYSRAK 150
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 25.2 bits (54), Expect = 8.1
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 72 LLHTLLRSDTQKVLEEAESRLNILMQTHFK 101
H L+ ++ ++ S + + F
Sbjct: 83 TTHHLMAYGNERFMQYLASSNSTFNLSSFL 112
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor,
hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB:
2w9p_A
Length = 87
Score = 24.1 bits (52), Expect = 9.8
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 23 GKKNLIDENSPVVQEFRKYAIIMNTKQD----KYERLVK 57
G N+ + N+ QE ++AI K+ ++ +
Sbjct: 1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLN 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.350
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,773,628
Number of extensions: 92254
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 29
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)