RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10790
         (127 letters)



>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 217

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRS----DTQKVLEEAE 89
           V + F +    +  +QD  E + K+ + +   ++ ++ LL  + +     D  K   +A 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 90  SRLNILMQTHFKSIKAELVGEDLYQYIRAFS 120
                 ++TH  S+K +   E  Y++   + 
Sbjct: 63  EHFGT-VKTHLTSLKTKFPAEQYYRFHEHWR 92


>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza
          sativa), subsp. japonica, oryzacystatin-I [TaxId:
          4530]}
          Length = 102

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 22 GGKKNLIDENSPVVQEFRKYAII-MNTKQDKYERLVKI 58
          GG + + +EN   + +  ++A+   N K +      K+
Sbjct: 10 GGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKL 47


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 24.1 bits (52), Expect = 7.6
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 11/50 (22%)

Query: 16  STNVNIGGKKNLIDEN----------SPVVQEFRKYAIIMNTKQDKYERL 55
           S    +G   N++DE+          SPV+    ++  + +   D    +
Sbjct: 99  SLKTRLGNLGNILDEDETQTRLLQLESPVLTT-AEFRAMRDYMGDTAAEI 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,925
Number of extensions: 16981
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 13
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)