BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10794
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 167/282 (59%), Gaps = 24/282 (8%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR +R+ D N GK ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH + + D + +L E+E +L+ + Q F+ + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM----------EELCGPEAEESQVK 165
RA + GLQE++EA +F H++K+ LI D + +++ + +A++ Q
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176
Query: 166 L----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
+TP +++LGV DL+GELMR I SV G D + +R +Y G +
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235
Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
E S+KL LKQSL K+E Y +KVRGSE+P+H++A V +
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFS 277
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 154/258 (59%), Gaps = 31/258 (12%)
Query: 28 IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
+DE+SP+VQ+FR Y+ + K D++ER+VK+SRDITIESKR+IFLLH++ + + +KVL
Sbjct: 24 LDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83
Query: 86 EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL--------- 136
EEA RLN L+ +F+++ EL +D+YQ+ ++S GLQEFI+AYT+ YL
Sbjct: 84 EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYXEYLCHEDAEGEN 143
Query: 137 KSNHLIGWDHVE---QKMEELCGPEAEES---------QVK-------LLTPTEFVLGVG 177
++ + W ++ Q +EE P+ E + QV+ + PTE++LG+
Sbjct: 144 ETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLS 203
Query: 178 DLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQ 237
DL+GEL R I S+ +G D+ C++ ++ Y ++ R +E RK+ KQS+
Sbjct: 204 DLTGELXRRCINSLGSG-DTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTXKQSVL 262
Query: 238 KMERTVYTVKVRGSEMPR 255
K E Y VKVRG E +
Sbjct: 263 KAENVCYNVKVRGGEAAK 280
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 31/252 (12%)
Query: 34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLEEAESR 91
+VQ+FR Y+ + K D++ER+VK+SRDITIESKR+IFLLH++ + + +KVLEEA R
Sbjct: 1 IVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQR 60
Query: 92 LNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL---------KSNHLI 142
LN L+ +F+++ EL +D+YQ+ ++S GLQEFIEAYT+ YL ++ +
Sbjct: 61 LNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEYLCHEDAEGENETKSVS 120
Query: 143 GWDHVE---QKMEELCGPEAEES---------QVK-------LLTPTEFVLGVGDLSGEL 183
W ++ Q +EE P+ E + QV+ + PTE++LG+ DL+GEL
Sbjct: 121 DWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGEL 180
Query: 184 MRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTV 243
R I S+ +G D+ C++ ++ Y ++ R +E RK+ KQS+ K E
Sbjct: 181 XRRCINSLGSG-DTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTXKQSVLKAENVC 239
Query: 244 YTVKVRGSEMPR 255
Y VKVRG E +
Sbjct: 240 YNVKVRGGEAAK 251
>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
Length = 228
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 96 MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
++TH S+K + E Y++ + LQ + F+ YL++ L+ + + E+
Sbjct: 68 VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 123
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
G E + + L +++ GV L+ EL R ++ SV AG S +T ++ L
Sbjct: 124 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 177
Query: 216 ASG--VSRVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
SG + +K S ++ LK ++K+E VY + +RG
Sbjct: 178 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216
>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
Length = 240
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 96 MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
++TH S+K + E Y++ + LQ + F+ YL++ L+ + + E+
Sbjct: 80 VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 135
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
G E + + L +++ GV L+ EL R ++ SV AG S +T ++ L
Sbjct: 136 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 189
Query: 216 ASGVS--RVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
SG +K S ++ LK ++K+E VY + +RG
Sbjct: 190 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 228
>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
Length = 235
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 96 MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
++TH S+K + E Y++ + LQ + F+ YL++ L+ + + E+
Sbjct: 75 VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 130
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
G E + + L +++ GV L+ EL R ++ SV AG S +T ++ L
Sbjct: 131 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 184
Query: 216 ASGVS--RVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
SG +K S ++ LK ++K+E VY + +RG
Sbjct: 185 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 223
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
AELV Y+Y ++ Q I + YL++ L+ + + E+ G + +S+
Sbjct: 77 AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 132
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
L +++LG+ L+ EL R+A SV G D +N ++ + DL +
Sbjct: 133 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERSLNISHFIGDLNTGFRLLNLKN-D 190
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
++ LK ++K+E VY V +RG
Sbjct: 191 GLRKRFDALKYDVKKIEEVVYDVSIRG 217
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
AELV Y+Y ++ Q I + YL++ L+ + + E+ G + +S+
Sbjct: 89 AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 144
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
L +++LG+ L+ EL R+A SV G D +N ++ + DL +
Sbjct: 145 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERSLNISHFIGDLNTGFRLLNLKN-D 202
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
++ LK ++K+E VY V +RG
Sbjct: 203 GLRKRFDALKYDVKKIEEVVYDVSIRG 229
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
AELV Y+Y ++ Q I + YL++ L+ + + E+ G + +S+
Sbjct: 97 AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 152
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
L +++LG+ L+ EL R+A SV G D +N ++ + DL +
Sbjct: 153 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERPLNISHFIGDLNTGFRLLNLKN-D 210
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
++ LK ++K+E VY V +RG
Sbjct: 211 GLRKRFDALKYDVKKIEEVVYDVSIRG 237
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
AELV Y+Y ++ Q I + YL++ L+ + + E G + +S+
Sbjct: 78 AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEXLGLKISQSE 133
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
L +++LG+ L+ EL R+A SV G D +N ++ + DL +
Sbjct: 134 GFHLDVEDYLLGILQLASELSRFATNSVTXG-DYERPLNISHFIGDLNTGFRLLNLKN-D 191
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
++ LK ++K+E VY V +RG
Sbjct: 192 GLRKRFDALKYDVKKIEEVVYDVSIRG 218
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
AELV Y+Y ++ Q I + YL++ L+ + + E G + +S+
Sbjct: 91 AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEXLGLKISQSE 146
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
L +++LG+ L+ EL R+A SV G D +N ++ + DL +
Sbjct: 147 GFHLDVEDYLLGILQLASELSRFATNSVTXG-DYERPLNISHFIGDLNTGFRLLNLKN-D 204
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
++ LK ++K+E VY V +RG
Sbjct: 205 GLRKRFDALKYDVKKIEEVVYDVSIRG 231
>pdb|3ZC1|A Chain A, Crystal Structure Of Afc3po
pdb|3ZC1|B Chain B, Crystal Structure Of Afc3po
pdb|3ZC1|C Chain C, Crystal Structure Of Afc3po
pdb|3ZC1|D Chain D, Crystal Structure Of Afc3po
pdb|3ZC1|E Chain E, Crystal Structure Of Afc3po
pdb|3ZC1|F Chain F, Crystal Structure Of Afc3po
pdb|3ZC1|G Chain G, Crystal Structure Of Afc3po
pdb|3ZC1|H Chain H, Crystal Structure Of Afc3po
Length = 199
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 57 KISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYI 116
K+ R++ I S + I L+H +EEAE L ++ + +KA ++Y Y+
Sbjct: 25 KVLREMRIHSTKSIALIHA-------GKVEEAEQELKKAIEL-LEKVKAYREYPEIYFYL 76
Query: 117 RAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGV 176
+ +QE +EA F N + G E +E +TP F+ G
Sbjct: 77 --CNDAMQELVEAIAF-----KNAISGEFTFEIDLE--------------VTPAAFLNGF 115
Query: 177 GDLSGELMRYAIGSVAAG 194
D GEL RYA+ + G
Sbjct: 116 ADAVGELRRYALTKLIEG 133
>pdb|3ZC0|A Chain A, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|B Chain B, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|C Chain C, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|D Chain D, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|E Chain E, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|F Chain F, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|G Chain G, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|H Chain H, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|I Chain I, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|J Chain J, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|K Chain K, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|L Chain L, Structure Of Afc3po - Duplex Rna Complex
Length = 199
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%)
Query: 57 KISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYI 116
K+ R++ I S + I L+H +EEAE L ++ + +KA ++Y Y+
Sbjct: 25 KVLREMRIHSTKSIALIHA-------GKVEEAEQELKKAIEL-LEKVKAYREYPEIYFYL 76
Query: 117 RAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGV 176
+ +QE +EA F N + G E +E +TP F+ G
Sbjct: 77 --CNDAMQELVEAIAF-----KNAISGEFTFEIDLE--------------VTPAAFLNGF 115
Query: 177 GDLSGELMRYAIGSVAAG 194
GEL RYA+ + G
Sbjct: 116 AAAVGELRRYALTKLIEG 133
>pdb|2C7J|B Chain B, Phycoerythrocyanin From Mastigocladus Laminosus, 295 K,
3.0 A
pdb|2C7K|B Chain B, Laue Structure Of Phycoerythrocyanin From Mastigocladus
Laminosus
pdb|2C7L|B Chain B, Low Temperature Structure Of Phycoerythrocyanin From
Mastigocladus Laminosus
Length = 172
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 181 GELMRYAIGSVAAGSDSTDCINATNTVRDLYVAM------LASGVSRVKEASRKLA 230
G ++RY SV AG S N +R+ Y A+ +ASG+ ++KEA+ K+A
Sbjct: 87 GFILRYVTYSVLAGDTSVMDDRCLNGLRETYQALGTPGDAVASGIKKMKEAALKIA 142
>pdb|1D2I|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1D2I|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1ES8|A Chain A, Crystal Structure Of Free Bglii
Length = 223
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 10 RRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
+R D T+++ G + L++ +F Y ++N + E K + DI E +V
Sbjct: 74 KRFDFLGTDIDFGKRDTLVE------VQFSNYPFLLNNTV-RSELFHKSNXDIDEEGXKV 126
Query: 70 IFLL---HTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVG 109
++ H S++ E+A+++LN L + + + LVG
Sbjct: 127 AIIITKGHXFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVG 169
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 181 GELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL-AVLKQ 234
G + +G V++G D+ + I A ++ LY A++ G V R+L A+LK+
Sbjct: 302 GRIPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVRVKRELEALLKE 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,097,028
Number of Sequences: 62578
Number of extensions: 267800
Number of successful extensions: 814
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 21
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)