Query psy10794
Match_columns 273
No_of_seqs 118 out of 403
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:40:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01997 Translin: Translin fa 100.0 1.8E-61 3.8E-66 425.1 19.2 196 49-251 1-200 (200)
2 PRK14562 haloacid dehalogenase 100.0 7.4E-56 1.6E-60 390.6 22.7 193 34-254 2-198 (204)
3 KOG3066|consensus 100.0 1.9E-55 4.2E-60 383.1 17.1 253 4-265 6-263 (271)
4 KOG3067|consensus 100.0 4.5E-50 9.8E-55 342.7 16.1 216 35-257 5-222 (226)
5 COG2178 Predicted RNA-binding 100.0 1.5E-43 3.3E-48 305.8 21.4 192 35-253 2-196 (204)
6 cd00361 arom_aa_hydroxylase Bi 63.8 21 0.00046 32.2 6.2 65 122-193 28-92 (221)
7 cd03345 eu_TyrOH Eukaryotic ty 59.2 49 0.0011 31.2 7.9 63 122-190 83-148 (298)
8 cd03348 pro_PheOH Prokaryotic 55.0 38 0.00082 30.8 6.2 65 122-193 34-98 (228)
9 PF00351 Biopterin_H: Biopteri 54.3 37 0.00081 32.5 6.3 56 122-178 84-142 (332)
10 cd03346 eu_TrpOH Eukaryotic tr 53.7 45 0.00097 31.3 6.6 65 122-192 84-151 (287)
11 KOG3054|consensus 50.8 1.4E+02 0.0031 27.6 9.2 30 127-156 200-229 (299)
12 PRK11913 phhA phenylalanine 4- 49.1 49 0.0011 30.9 6.1 65 122-193 50-114 (275)
13 TIGR01269 Tyr_3_monoox tyrosin 47.4 87 0.0019 31.3 7.8 57 121-178 206-265 (457)
14 TIGR01270 Trp_5_monoox tryptop 46.3 87 0.0019 31.4 7.7 57 121-178 212-271 (464)
15 TIGR01267 Phe4hydrox_mono phen 43.9 69 0.0015 29.5 6.2 64 122-192 34-97 (248)
16 PF06892 Phage_CP76: Phage reg 42.9 70 0.0015 27.3 5.8 49 168-218 89-137 (162)
17 KOG2180|consensus 42.9 61 0.0013 34.2 6.2 61 18-78 65-131 (793)
18 TIGR01268 Phe4hydrox_tetr phen 41.5 1.1E+02 0.0024 30.4 7.7 56 122-178 186-244 (436)
19 PF15647 Tox-REase-3: Restrict 40.2 99 0.0021 24.7 5.7 66 60-129 31-98 (109)
20 PF05537 DUF759: Borrelia burg 39.6 2.2E+02 0.0047 28.2 9.1 121 110-254 213-359 (431)
21 TIGR02132 phaR_Bmeg polyhydrox 38.9 2.7E+02 0.0059 24.5 9.4 47 203-252 91-138 (189)
22 PF11469 Ribonucleas_3_2: Ribo 38.4 1.5E+02 0.0032 24.0 6.4 62 122-192 57-118 (120)
23 PF15605 Toxin_52: Putative to 38.0 85 0.0018 25.0 5.0 68 166-243 20-101 (103)
24 smart00428 H3 Histone H3. 36.5 53 0.0011 26.3 3.7 38 99-136 38-75 (105)
25 COG4026 Uncharacterized protei 35.7 3E+02 0.0065 25.3 8.7 35 29-63 128-162 (290)
26 PF10158 LOH1CR12: Tumour supp 34.6 2.2E+02 0.0048 23.5 7.3 38 113-151 80-117 (131)
27 cd03347 eu_PheOH Eukaryotic ph 33.9 2E+02 0.0043 27.4 7.6 65 122-192 84-151 (306)
28 PHA02566 alt ADP-ribosyltransf 31.9 4.9E+02 0.011 27.5 10.6 79 138-239 421-500 (684)
29 KOG3820|consensus 30.2 2.2E+02 0.0048 28.2 7.5 40 137-177 226-265 (461)
30 KOG1666|consensus 28.5 2.9E+02 0.0062 25.0 7.4 58 70-129 23-80 (220)
31 PF11473 B2: RNA binding prote 28.2 1E+02 0.0022 22.8 3.7 52 199-254 11-63 (73)
32 KOG0994|consensus 28.0 9.6E+02 0.021 27.5 17.8 72 34-107 1413-1484(1758)
33 PF12463 DUF3689: Protein of u 26.7 96 0.0021 29.3 4.3 24 169-192 157-180 (303)
34 KOG4025|consensus 25.4 4.6E+02 0.01 23.0 8.1 15 112-126 162-176 (207)
35 TIGR00496 frr ribosome recycli 25.4 4.4E+02 0.0096 22.7 8.0 28 49-76 98-125 (176)
36 KOG4642|consensus 24.1 4E+02 0.0087 24.9 7.6 177 64-252 46-229 (284)
37 TIGR03465 HpnD squalene syntha 22.8 4.5E+02 0.0098 23.6 7.9 44 171-215 111-160 (266)
38 PF10046 BLOC1_2: Biogenesis o 22.7 3.6E+02 0.0079 20.8 6.7 71 170-246 9-85 (99)
39 KOG0058|consensus 22.6 6.2E+02 0.014 26.9 9.6 37 138-186 398-434 (716)
40 PF03918 CcmH: Cytochrome C bi 21.9 87 0.0019 26.4 2.8 41 177-220 56-96 (148)
41 PF12246 MKT1_C: Temperature d 21.8 2.8E+02 0.0061 25.0 6.3 56 112-177 107-162 (243)
42 PF04124 Dor1: Dor1-like famil 21.8 6.7E+02 0.015 23.5 15.3 26 189-215 115-140 (338)
43 PLN00160 histone H3; Provision 21.7 1.3E+02 0.0028 23.7 3.6 37 99-136 30-66 (97)
44 COG3937 Uncharacterized conser 21.7 2.9E+02 0.0062 22.3 5.5 60 178-242 46-105 (108)
45 PF14276 DUF4363: Domain of un 21.2 4E+02 0.0087 20.9 6.5 22 57-78 23-44 (121)
46 PF00804 Syntaxin: Syntaxin; 21.0 3.4E+02 0.0074 19.8 9.0 64 43-107 4-72 (103)
47 PF09543 DUF2379: Protein of u 20.5 2E+02 0.0044 23.6 4.5 31 48-78 53-83 (121)
48 KOG3771|consensus 20.5 8.4E+02 0.018 24.5 9.6 100 36-137 109-213 (460)
49 PF03564 DUF1759: Protein of u 20.3 4.5E+02 0.0098 21.0 11.4 78 179-260 38-123 (145)
50 COG1577 ERG12 Mevalonate kinas 20.3 3.6E+02 0.0078 25.5 6.9 52 169-225 198-249 (307)
51 PF01765 RRF: Ribosome recycli 20.2 5.3E+02 0.011 21.7 8.3 27 50-76 90-116 (165)
52 PTZ00018 histone H3; Provision 20.1 1.4E+02 0.003 25.0 3.6 36 99-136 71-106 (136)
53 TIGR02267 Myxococcus xanthus p 20.1 5E+02 0.011 21.3 6.6 27 52-78 59-85 (123)
No 1
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=100.00 E-value=1.8e-61 Score=425.11 Aligned_cols=196 Identities=40% Similarity=0.643 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHH
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIE 128 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvE 128 (273)
||+||+|+|+|||||++||++||+|||++.+++.+++++|++.++++++ .+++|+ +++++|+|+|+++|++|+|||||
T Consensus 1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE 78 (200)
T PF01997_consen 1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999988888999999999999998 999999 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHH
Q psy10794 129 AYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVR 208 (273)
Q Consensus 129 A~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~ 208 (273)
|++|++||++++|||++|+++.|++...+ ...++|+++|||+||+||||||||||||+++.| |++.|+++++||+
T Consensus 79 a~~f~~~l~~~~L~t~~ev~~~l~~~~~~----~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~g-d~~~~~~i~~f~~ 153 (200)
T PF01997_consen 79 AISFYHYLETGRLLTPEEVGEILGFSEDD----EDRFHVTPEDYLLGLADLTGELMRYAINSVTKG-DYERPEKILEFMR 153 (200)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHCTCBSST----SCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT--SSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHhhcccc----ccceecCHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHH
Confidence 99999999999999999999999988755 366799999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhhcCCC----CCcchhhhHHHHHHHHHHHHhhhHhHHHhCC
Q psy10794 209 DLYVAMLASGVS----RVKEASRKLAVLKQSLQKMERTVYTVKVRGS 251 (273)
Q Consensus 209 ~ly~~f~~L~lk----~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgl 251 (273)
+||++|..||+| +|++||||+|++||+|+|+|++||+++|||+
T Consensus 154 ~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs 200 (200)
T PF01997_consen 154 ELYSGFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS 200 (200)
T ss_dssp HHHHHHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence 999999999994 2899999999999999999999999999996
No 2
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=100.00 E-value=7.4e-56 Score=390.62 Aligned_cols=193 Identities=21% Similarity=0.231 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10794 34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLY 113 (273)
Q Consensus 34 ~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ 113 (273)
+.++|++++++||++|++||+|+++|||||+.||++||++||.+. ++|.+.+.++.+ .+.+|++.++++|+|
T Consensus 2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~-------~~a~~~l~~a~~-~~~~l~~~~~~~~~~ 73 (204)
T PRK14562 2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDF-------EEAEKLLKEAEE-LVKELKELLKDHPEL 73 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHH-HHHHHHHHhccCchh
Confidence 578999999999999999999999999999999999999999764 788888999999 899999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhc
Q psy10794 114 QYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAA 193 (273)
Q Consensus 114 ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~ 193 (273)
+|+++|++|+||||||++|++||++++|||++++ +|+++|||+||+|+||||||||+|+++.
T Consensus 74 ~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~eel------------------~v~~~dYLlGl~Dl~GEL~R~al~~l~~ 135 (204)
T PRK14562 74 YYAGYVGTALQEYVEALLVYSLLFENKIPSPEEL------------------GVPEAAYLLGLADAIGELRRHILELLRK 135 (204)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHHc------------------CCCHHHHHhHHHHHHhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998 7999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhcCCCCCc---chhhhHHHHHHHHHHH-HhhhHhHHHhCCCCC
Q psy10794 194 GSDSTDCINATNTVRDLYVAMLASGVSRVK---EASRKLAVLKQSLQKM-ERTVYTVKVRGSEMP 254 (273)
Q Consensus 194 G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~---~LRkK~D~lk~~lkKv-E~v~Ydl~iRgle~~ 254 (273)
| |++.|+++++||++||++|+.||+| ++ +||||+|++||+|+|+ ++++|.+..++++..
T Consensus 136 g-d~~~~~~i~~fm~~ly~~~~~l~~~-~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~~~ 198 (204)
T PRK14562 136 G-EIEEAEKLLEIMEEIYEFLMTLDYP-DAITPGLRRKQDVARSLLERTRGDLTNAILNRKLEEA 198 (204)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHhcCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999998 55 9999999999999998 999999998877643
No 3
>KOG3066|consensus
Probab=100.00 E-value=1.9e-55 Score=383.12 Aligned_cols=253 Identities=31% Similarity=0.369 Sum_probs=225.1
Q ss_pred cccccccccCCCCCCcCCCCcc-c-ccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CC
Q psy10794 4 RGFRDRRRKDQSSTNVNIGGKK-N-LIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SD 80 (273)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-~~ 80 (273)
+++++|-++ +-+.|+.+.+ + ++.++++++..|.+|+++|++.||+||||+|+|||||+.||++||+|||..+ ++
T Consensus 6 sSafqRvaf---mlmaPklkpqkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~ 82 (271)
T KOG3066|consen 6 SSAFQRVAF---MLMAPKLKPQKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGF 82 (271)
T ss_pred cchHHHHHH---HHhCcccCcccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCC
Confidence 344444432 3355555333 3 7888999999999999999999999999999999999999999999999987 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCccc
Q psy10794 81 TQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAE 160 (273)
Q Consensus 81 ~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~ 160 (273)
+++++.++...|..++.+.+..|+.+|.|.++|+|++++++|+||||||++|++|+.+|+|.+.+|+...+-....
T Consensus 83 ~e~~l~~~~~~le~vr~k~f~~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~---- 158 (271)
T KOG3066|consen 83 PEPKLFDRTSILEKVRHKEFESLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDS---- 158 (271)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCC----
Confidence 8999999999999999988999999999999999999999999999999999999999999999999877643321
Q ss_pred ccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCC--CcchhhhHHHHHHHHHH
Q psy10794 161 ESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR--VKEASRKLAVLKQSLQK 238 (273)
Q Consensus 161 ~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~--n~~LRkK~D~lk~~lkK 238 (273)
+....|++-||++|+|||||||||+||+++..| +++.|.++++|++.||.+|+....+. ..++.+|+.||++||-|
T Consensus 159 -~~rl~in~iDYvLGvaDlTGElMRm~I~~~s~g-~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~K 236 (271)
T KOG3066|consen 159 -SFRLSINFIDYVLGVADLTGELMRMLITNGSKG-SIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISK 236 (271)
T ss_pred -ccceeeeHHHHHHHHhhhHHHHHHHHHhcCcCc-chhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHH
Confidence 134489999999999999999999999999999 99999999999999999999987654 56899999999999999
Q ss_pred HHhhhHhHHHhCCCCChhhhhhhhhcc
Q psy10794 239 MERTVYTVKVRGSEMPRHVIAHVVNES 265 (273)
Q Consensus 239 vE~v~Ydl~iRgle~~~~~~~~~~~~~ 265 (273)
||++||.+.+||+|.++.++++.++..
T Consensus 237 vEnaCys~~vRg~e~~~l~l~~~~~~~ 263 (271)
T KOG3066|consen 237 VENACYSKIVRGAEKRYLNLEVDTATP 263 (271)
T ss_pred HHhHHHHHHhcccccccccccccccCC
Confidence 999999999999999999998876554
No 4
>KOG3067|consensus
Probab=100.00 E-value=4.5e-50 Score=342.66 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10794 35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDL 112 (273)
Q Consensus 35 ~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~--~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~ 112 (273)
.++|.+++..+|+.++.||+|.+.++.|+..+|.+...|+-+|. +..++.|..|++.+..|+. .+..|++..+..+|
T Consensus 5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy 83 (226)
T KOG3067|consen 5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence 48999999999999999999999999999999999999998887 4689999999999999999 99999999999999
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 113 YQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 113 ~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~ 192 (273)
|+|++.|...+|..|+..+|++||+++.|+|++++.++||+++.. +..||++++|||.|++-|++||.|+++|+||
T Consensus 84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eilgl~p~~----s~~FhLdvedyl~gvl~L~seLsR~svNsVt 159 (226)
T KOG3067|consen 84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEILGLEPDR----SEGFHLDVEDYLSGVLFLASELSRQSVNSVT 159 (226)
T ss_pred EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhcCCccc----cccceeeHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999998543 4668999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCChhh
Q psy10794 193 AGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHV 257 (273)
Q Consensus 193 ~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~ 257 (273)
.| ||++|..+..|+.+++++|++||+| ||+||||||+|||+|+|+|+|+||++|||+..+|.+
T Consensus 160 aG-dY~~Pl~v~~fi~dlhs~FrlLnLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~~epav 222 (226)
T KOG3067|consen 160 AG-DYHRPLHVSNFINDLHSGFRLLNLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLVDEPAV 222 (226)
T ss_pred cc-CcCCchHHHHHHhhhcccceeeecc-chhhhccccchhhhHHhhhhhheeeeeecccCCccc
Confidence 99 9999999999999999999999998 999999999999999999999999999999866543
No 5
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-43 Score=305.83 Aligned_cols=192 Identities=24% Similarity=0.308 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10794 35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQ 114 (273)
Q Consensus 35 ~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~r 114 (273)
.+.+.++++.|+++++.||+++++||+|+++|+.+|+++||++. ++|...++++.+ .+++|+..+.++|..+
T Consensus 2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~-------eeA~~~l~~a~~-~v~~Lk~~l~~~pel~ 73 (204)
T COG2178 2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDF-------EEAEKKLKKASE-AVEKLKRLLAGFPELY 73 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHH-HHHHHHHHHhhhHHHH
Confidence 46789999999999999999999999999999999999999985 899999999999 9999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcC
Q psy10794 115 YIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAG 194 (273)
Q Consensus 115 y~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G 194 (273)
|+|+++.|+||||||.+|+.|++++.+|+++|+ +|++.+||+||||++|||||+++..+..|
T Consensus 74 ~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL------------------~V~~~~YilGl~D~vGELrR~~le~l~~~ 135 (204)
T COG2178 74 FAGFVTTALQEYVEATLLYSILKDGRLPSPEEL------------------GVPPIAYILGLADAVGELRRHVLELLRKG 135 (204)
T ss_pred HHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 79999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHhhcCCCC--CcchhhhHHHHHHHHHHH-HhhhHhHHHhCCCC
Q psy10794 195 SDSTDCINATNTVRDLYVAMLASGVSR--VKEASRKLAVLKQSLQKM-ERTVYTVKVRGSEM 253 (273)
Q Consensus 195 ~d~~~~~~i~~fm~~ly~~f~~L~lk~--n~~LRkK~D~lk~~lkKv-E~v~Ydl~iRgle~ 253 (273)
+++.+++.++||++||..++.|++|+ .++||||+|++|+.++|. +++++...-|.++.
T Consensus 136 -~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~~a~~~r~le~ 196 (204)
T COG2178 136 -SFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLFRAKQNRQLEE 196 (204)
T ss_pred -cHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 669999999999999995 88888888776554
No 6
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=63.84 E-value=21 Score=32.24 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhc
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAA 193 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~ 193 (273)
|-+||++++.... +...++|..++|++.|.-.+++.. ..-++-|++.+++-+|++ +||.++.-.+
T Consensus 28 Ac~~yl~gl~~l~-l~~d~IPql~~in~~L~~~TGw~~-~pV~gli~~~~Ff~~LA~-----r~Fp~t~~iR 92 (221)
T cd00361 28 ACREYLEGLELLG-LPEDRIPQLEDVSEFLKALTGWTL-VPVAGLISPRDFFALLAF-----RVFPVTQYIR 92 (221)
T ss_pred cCHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhhcCCEE-EecCCcCCHHHHHHHHhc-----CCCceeeeec
Confidence 6788888888877 777999999999999988776632 112348999999999998 7777766555
No 7
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=59.24 E-value=49 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHH---HhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHH
Q psy10794 122 GLQEFIEAYTFLH---YLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGS 190 (273)
Q Consensus 122 ~lQEyvEA~sf~~---~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~ 190 (273)
|-+||++++.... =+...++|..++|++.|.-.+++.. ..-.+-|+..+++-+|++ +||-++.
T Consensus 83 Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~-~pV~Gli~~~~Ff~~LA~-----R~Fp~t~ 148 (298)
T cd03345 83 ACKEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTGFQL-RPVAGLLSARDFLASLAF-----RVFQCTQ 148 (298)
T ss_pred hhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhccCCEE-EecCccCCHHHHHHHHhc-----Ccccccc
Confidence 7789999888763 3567899999999999987776531 112347999999999986 5554443
No 8
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=55.04 E-value=38 Score=30.78 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhc
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAA 193 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~ 193 (273)
|-+||.+++.... +...++|..++|++.|.-.+++.. ..-.+-|++.+++-+|++ +||-++.-.+
T Consensus 34 Ac~~yl~gl~~L~-l~~d~IPql~~vn~~L~~~TGw~~-~pV~Glip~~~Ff~~LA~-----r~Fp~t~~iR 98 (228)
T cd03348 34 ACDAFLEGLEKLG-LPTDRIPDFADVSERLKAATGWTV-VAVPGLIPDDEFFEHLAN-----RRFPVTNFIR 98 (228)
T ss_pred cCHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhccCCEE-EecCCcCCHHHHHHHHhc-----CCCceeeeec
Confidence 6788888887777 677899999999999988776632 112347999999999987 6666554443
No 9
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=54.27 E-value=37 Score=32.48 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHH---hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFLHY---LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~~~---L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|-+||.+++-...= +...++|..++|++.|.-.+++.. ..-.+-|+..|+|.||++
T Consensus 84 AC~eyl~~~~~L~~~~G~~~d~IPqL~dvs~~L~~~TGw~l-~pV~Gll~~rdF~~~LA~ 142 (332)
T PF00351_consen 84 ACREYLEGFPLLEKYCGYPEDRIPQLEDVSEFLKERTGWQL-RPVAGLLSARDFFAGLAF 142 (332)
T ss_dssp B-HHHHHHHHHHHHHHT-BTTB---HHHHHHHHHHHHS-EE-EEESSEB-HHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhccCCCccCCCCHHHHhHHHHhhcCeEE-EEeCcccCHHHHHHHHhc
Confidence 77888888876642 567899999999999987765531 112347899999999986
No 10
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=53.73 E-value=45 Score=31.35 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHH---HhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 122 GLQEFIEAYTFLH---YLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 122 ~lQEyvEA~sf~~---~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~ 192 (273)
|-+||++++.... =+...++|..++|++.|.-.+++.. ..-.+-|+..+++-+|++ +||-++.-.
T Consensus 84 Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~-~pV~Gli~~~~Ff~~LA~-----r~Fp~t~~I 151 (287)
T cd03346 84 ACREYLKNLPLLEKHCGYREDNIPQLEDVSRFLKERTGFTI-RPVAGYLSPRDFLAGLAF-----RVFHCTQYV 151 (287)
T ss_pred ccHHHHHHHHHHHhccCCCcCCCCCHHHHHHHHHhccCCEE-EecCCcCCHHHHHHHHhc-----Ccccceeee
Confidence 6788888886664 2456899999999999987766531 112347999999999986 555544433
No 11
>KOG3054|consensus
Probab=50.81 E-value=1.4e+02 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHhhcCC
Q psy10794 127 IEAYTFLHYLKSNHLIGWDHVEQKMEELCG 156 (273)
Q Consensus 127 vEA~sf~~~L~~~~Lit~eev~~~l~~~~~ 156 (273)
-...-|..|++....+.+++++..+++.+.
T Consensus 200 nll~eFv~YIk~nKvV~ledLas~f~Lrtq 229 (299)
T KOG3054|consen 200 NLLSEFVEYIKKNKVVPLEDLASEFGLRTQ 229 (299)
T ss_pred HHHHHHHHHHHhcCeeeHHHHHHHhCccHH
Confidence 344579999999999999999999888763
No 12
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=49.06 E-value=49 Score=30.91 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhc
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAA 193 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~ 193 (273)
|-+||.+++.... |...++|..++|++.|.-.+++.. ..-.+-|++.+++-+|++ +||.++.-.+
T Consensus 50 Ac~~yl~gl~~L~-l~~d~IPql~~in~~L~~~TGw~~-~pV~Glip~~~Ff~~LA~-----r~Fp~t~~IR 114 (275)
T PRK11913 50 ACDEFLEGLEALG-LPKDRIPQLDEINRVLQAATGWQV-VPVPGLIPFDVFFELLAN-----RRFPVATFIR 114 (275)
T ss_pred cCHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhhcCCEE-EecCccCCHHHHHHHHhc-----Cccceeeeec
Confidence 6778888887775 557899999999999998776632 112347999999999987 6666554443
No 13
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=47.35 E-value=87 Score=31.28 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHH---HhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 121 AGLQEFIEAYTFLH---YLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 121 ~~lQEyvEA~sf~~---~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
.|-+||.+++-... =+...++|..++|++.|.-.+++.. ..-.+.|++.||+.+|++
T Consensus 206 ~Ac~eyl~gl~~L~~~~gl~~d~IPqL~dvs~~L~~~TGw~l-~pV~GLl~~rdF~~~LA~ 265 (457)
T TIGR01269 206 HACREYIDAFQLLEKYCNYNSESIPQLQTISEFLHRTTGFRL-RPVAGLLSARDFLASLAF 265 (457)
T ss_pred hhhHHHHHHHHHHHhhcCCCcCCCCCHHHHHHHHHhccCCEE-EeccccCCHHHHHHHHhc
Confidence 36678888776654 2456899999999999987776531 112348999999999985
No 14
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.28 E-value=87 Score=31.41 Aligned_cols=57 Identities=14% Similarity=0.287 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHH---HhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 121 AGLQEFIEAYTFLH---YLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 121 ~~lQEyvEA~sf~~---~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
.|-+||.+++-... =+...++|..++|++.|.-.+++.. ..-.+-|++.||+.+|++
T Consensus 212 ~Ac~eyl~gl~~L~~~~g~~~d~IPql~dvs~~L~~~TGw~~-~pV~Gll~~r~F~~~LA~ 271 (464)
T TIGR01270 212 HACKEFLDNLPLLEKYCGYREDNIPQLEDVSKFLKAKTGFRL-RPVAGYLSARDFLSGLAF 271 (464)
T ss_pred cccHHHHHHHHHHHhhcCCCccCCCCHHHHHHHHHhccCCEE-EeccccCCHHHHHHHHhc
Confidence 36678888776552 2456899999999999987776531 112348999999999985
No 15
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=43.87 E-value=69 Score=29.49 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~ 192 (273)
|-+||.+++.... |...++|..++|++.|.-.+++.. ..-.+-|+..+++-+|++ +||-++.-.
T Consensus 34 Ac~~yl~gl~~lg-l~~d~IPql~~vn~~L~~~TGw~~-~pV~Gli~~~~Ff~~LA~-----r~Fp~t~~i 97 (248)
T TIGR01267 34 ACQEYLDGIEQLG-LPHDRIPDFDEINRKLQATTGWRI-AAVPGLIPFQTFFEHLAN-----RRFPVTTWL 97 (248)
T ss_pred ccHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhccCCEE-EecCCcCCHHHHHHHHhc-----Cccceeeee
Confidence 6778888887765 467899999999999987776531 112347899999998886 566554433
No 16
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=42.95 E-value=70 Score=27.30 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=40.5
Q ss_pred ChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcC
Q psy10794 168 TPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASG 218 (273)
Q Consensus 168 ~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~ 218 (273)
++.+|++...--.|||+|-++..+..| .+.+.++ ..++++++++.+.|-
T Consensus 89 ~l~~~~l~~~a~~Gela~~a~ea~~dg-rit~~er-~~i~~~a~~ai~~l~ 137 (162)
T PF06892_consen 89 SLPERVLKATAEVGELAREALEALSDG-RITRSER-NRIIKEANAAIRSLA 137 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCC-CcCHHHH-HHHHHHHHHHHHHHH
Confidence 888999999999999999999999998 7776654 567777777766653
No 17
>KOG2180|consensus
Probab=42.89 E-value=61 Score=34.18 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=35.1
Q ss_pred CcCCCCcccccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHH----HHHHHHhccc
Q psy10794 18 NVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIE--SKR----VIFLLHTLLR 78 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~--SK~----~If~LHR~~~ 78 (273)
|.+..++++..+...++.+.|..|++-=+.-..--+-|..++|||-.+ +|+ .|..|||.|.
T Consensus 65 N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~M 131 (793)
T KOG2180|consen 65 NSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHM 131 (793)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHH
Confidence 455556666666677787777777653322222223344556665433 333 4778888775
No 18
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=41.52 E-value=1.1e+02 Score=30.39 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHH-H--hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFLH-Y--LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~~-~--L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|-+||.+++-... . +...++|..++|++.|.-.+++.. ..-.+-|++.|++.||++
T Consensus 186 Ac~eyl~~l~~L~~~~g~~~d~IPql~dvs~~L~~~TGw~~-~pV~Gll~~~~F~~~LA~ 244 (436)
T TIGR01268 186 ACQEYNHIFPLLQQNCGFREDNIPQLEDVSQFLQDCTGFTL-RPVAGLLSSRDFLAGLAF 244 (436)
T ss_pred ccHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEE-EecCCcCCHHHHHHHHhc
Confidence 5566776664443 1 345799999999999987776531 112348999999999985
No 19
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=40.20 E-value=99 Score=24.68 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHH
Q psy10794 60 RDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEA 129 (273)
Q Consensus 60 RdIt~~SK~~If~LHR~~~--~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA 129 (273)
|++..-|-.+|...-+.-+ +++.+.|.+... +.++. .+ ++|..-..--+|-|.+-+.+-++||+|-
T Consensus 31 RE~D~Vtd~~i~Q~K~~~s~i~~pkn~lnk~~R--~QiK~-Ti-eaA~q~gkka~f~F~~~v~~kv~eY~e~ 98 (109)
T PF15647_consen 31 REFDVVTDQYIAQAKPTLSAIDKPKNFLNKKTR--NQIKA-TI-EAAEQQGKKAYFWFKGEVHDKVKEYIER 98 (109)
T ss_pred cchhhhhHHHHHHhCCccccccchHHHhhHHHH--HHHHH-HH-HHHHHhCCeEEEEecccccHHHHHHHHH
Confidence 5566666666655544433 223333332111 12222 11 2333333333555778899999999985
No 20
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=39.64 E-value=2.2e+02 Score=28.21 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=78.1
Q ss_pred CchhhHhhhhhhHH----------HHHHHHHHHHHHhhcCCCCC-HHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 110 EDLYQYIRAFSAGL----------QEFIEAYTFLHYLKSNHLIG-WDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 110 ~~~~ry~~~~s~~l----------QEyvEA~sf~~~L~~~~Lit-~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
.+|++....+.+.+ +.+..|+-|..-|.+-.+.+ -++....+ .+||.|=.|
T Consensus 213 EdFLr~asvlKg~l~el~lnd~~~~nl~~AvelAA~LkSsG~as~ne~Ai~~V------------------s~~L~Geg~ 274 (431)
T PF05537_consen 213 EDFLRKASVLKGSLRELGLNDENGENLKNAVELAAMLKSSGLASDNESAIAAV------------------SSLLKGEGD 274 (431)
T ss_pred HHHHHHHHHHHhHHHhcCCccccchhHHHHHHHHHHHHhcCCCCccHHHHHHH------------------HHHhcCCch
Confidence 45777766666655 67899999999999888877 55554333 244444444
Q ss_pred hHhHHHH--------------HHHHHhhc-CCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhh
Q psy10794 179 LSGELMR--------------YAIGSVAA-GSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTV 243 (273)
Q Consensus 179 LtGELmR--------------~ain~v~~-G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~ 243 (273)
-.=++|+ .+...++. |++++...++ |.++...|.+|++.. ----.|.++.+|.++|+.+
T Consensus 275 ~lf~imk~~~~~G~KY~E~~K~~~E~ltq~g~~~~lr~~i---L~kMikD~sSlgitk---~AdekEkikSnLasiEQTL 348 (431)
T PF05537_consen 275 ELFDIMKPIKKFGEKYLERAKMNWELLTQSGAKFDLRSRI---LKKMIKDISSLGITK---HADEKEKIKSNLASIEQTL 348 (431)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHhhhccccCcchHH---HHHHHHHHHhccccc---ccCcHHHHHhHHHHHHHHH
Confidence 3333333 34444443 2233333333 667777888888863 2334688899999999999
Q ss_pred HhHHHhCCCCC
Q psy10794 244 YTVKVRGSEMP 254 (273)
Q Consensus 244 Ydl~iRgle~~ 254 (273)
=+++-.++.|-
T Consensus 349 ~dlTt~vL~PL 359 (431)
T PF05537_consen 349 EDLTTNVLKPL 359 (431)
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 21
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.93 E-value=2.7e+02 Score=24.48 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHh-hcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCC
Q psy10794 203 ATNTVRDLYVAML-ASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSE 252 (273)
Q Consensus 203 i~~fm~~ly~~f~-~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle 252 (273)
+-.++.++|..+. .+. .++.+.+.+..++++|..+|+-+ |--++-+|
T Consensus 91 lee~fdd~~d~l~~q~e--q~~~~~~~v~~~~q~~~~l~~K~-D~~L~llE 138 (189)
T TIGR02132 91 IEEFFDDKFDELEAQQE--QAPALKKDVTKLKQDIKSLDKKL-DKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHh--hCchHHhHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 3345555555544 121 26788888888888888876543 34445555
No 22
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=38.41 E-value=1.5e+02 Score=23.97 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~ 192 (273)
|=-+|+||+.-+.||+. .+|.+|.-++|.-...+ +..|.+-.-|..| ..-|||.++.-..++
T Consensus 57 ~kGd~aEA~iAyAWLeg--~it~eEaveil~~nl~~-----dv~~fsrkke~ig--~Ala~Ll~~i~Erl~ 118 (120)
T PF11469_consen 57 GKGDIAEALIAYAWLEG--KITIEEAVEILKANLTE-----DVLHFSRKKEAIG--KALAELLKVIKERLT 118 (120)
T ss_dssp GHHHHHHHHHHHHHHTT--SS-HHHHHHHHHCT--G-----GGG-TTTHHHHHH--HHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhc--cccHHHHHHHHHhcCch-----hhcchhHHHHHHH--HHHHHHHHHHHHHhc
Confidence 55689999999999984 78999998888643322 2236666666655 456888887766554
No 23
>PF15605 Toxin_52: Putative toxin 52
Probab=38.01 E-value=85 Score=25.03 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=50.4
Q ss_pred CCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhc-----C-CCCCcc--------hhhhHHH
Q psy10794 166 LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLAS-----G-VSRVKE--------ASRKLAV 231 (273)
Q Consensus 166 ~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L-----~-lk~n~~--------LRkK~D~ 231 (273)
|++..||-..+=||.||..| .. + -.++.-++=|++-|.||.-. + ++ |+. |-+|++.
T Consensus 20 hltd~D~sgt~Rdl~G~pVp-------Kp-~-GgywdHlqEm~da~~GL~n~~~~le~~L~-np~l~~~~r~~lq~~l~e 89 (103)
T PF15605_consen 20 HLTDMDFSGTLRDLQGNPVP-------KP-D-GGYWDHLQEMQDAYRGLVNRKRTLEGSLK-NPNLSGRTRELLQSKLNE 89 (103)
T ss_pred hccccchHHHHHHHcCCccc-------CC-C-CCccHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHH
Confidence 78888999999999998753 22 2 25677777777777777642 1 33 444 8899999
Q ss_pred HHHHHHHHHhhh
Q psy10794 232 LKQSLQKMERTV 243 (273)
Q Consensus 232 lk~~lkKvE~v~ 243 (273)
+-+-|+|||+.+
T Consensus 90 a~~~l~kiE~~~ 101 (103)
T PF15605_consen 90 ANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 24
>smart00428 H3 Histone H3.
Probab=36.46 E-value=53 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L 136 (273)
++.+++..+.....++|+...-.+|||.+|+.+.--|=
T Consensus 38 LVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfe 75 (105)
T smart00428 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFE 75 (105)
T ss_pred HHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 45556666654345789888889999999998765554
No 25
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.74 E-value=3e+02 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy10794 29 DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDIT 63 (273)
Q Consensus 29 ~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt 63 (273)
.+-|.+...++.++..|++.+...|.+++---++.
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888888888877655544
No 26
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=34.56 E-value=2.2e+02 Score=23.50 Aligned_cols=38 Identities=5% Similarity=0.154 Sum_probs=26.2
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy10794 113 YQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM 151 (273)
Q Consensus 113 ~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l 151 (273)
-+|..... .+++.-..+.=++.+-+..+++.+.+.+.|
T Consensus 80 ~k~ae~L~-kv~els~~L~~~~~lL~~~v~~ie~LN~~L 117 (131)
T PF10158_consen 80 AKFAEQLE-KVNELSQQLSRCQSLLNQTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555444 577777777777777777777788887665
No 27
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=33.86 E-value=2e+02 Score=27.37 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH-HH--hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 122 GLQEFIEAYTFL-HY--LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 122 ~lQEyvEA~sf~-~~--L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~ 192 (273)
|-+||.+++-.. .. +...++|..++|++.|.-.+++.. ..-.+-|+..+++.+|++ ++|-++.-.
T Consensus 84 Ac~eyl~~l~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~-~pV~Gli~~~~Ff~~LA~-----R~Fp~t~yI 151 (306)
T cd03347 84 ACYEYNHVFPLLEKNCGFSEDNIPQLEDVSNFLQTCTGFRL-RPVAGLLSSRDFLAGLAF-----RVFHSTQYI 151 (306)
T ss_pred cCHHHHHHHHHHHHhcCCCcCCCCCHHHHHHHHHhccCCEE-EecCccCCHHHHHHHHhc-----Cccceeeee
Confidence 556666665433 22 346799999999999987766531 112347999999999987 555544333
No 28
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=31.91 E-value=4.9e+02 Score=27.49 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=48.0
Q ss_pred cCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhh-
Q psy10794 138 SNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLA- 216 (273)
Q Consensus 138 ~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~- 216 (273)
....+|.+|...+=.+.. ....++-+||.|-.|=+ ....+.++.++++.|-++|..
T Consensus 421 ~~k~LT~~E~~AI~dY~~--------sgY~~IN~yLrG~~~s~---------------~~~~~~ei~k~Ik~IDsAf~kg 477 (684)
T PHA02566 421 DPKKLTPAESRAIREYCA--------SGYIDINNFLLGRYKPE---------------FYMDEEEAEKAIDNLDSAFKNG 477 (684)
T ss_pred CcccCCHHHHHHHHHHHH--------hhHHHHHHHHhcCCCcc---------------cccChHHHHHHHHHHHHHHhcc
Confidence 567788888754433321 12445566665544311 111245888999999999997
Q ss_pred cCCCCCcchhhhHHHHHHHHHHH
Q psy10794 217 SGVSRVKEASRKLAVLKQSLQKM 239 (273)
Q Consensus 217 L~lk~n~~LRkK~D~lk~~lkKv 239 (273)
..+|.+-.+-|.++.....+++.
T Consensus 478 ~klP~GitVYRG~~l~~~~~e~~ 500 (684)
T PHA02566 478 DKLPEGTTLYRGQSVTSKIYEAL 500 (684)
T ss_pred CcCCCCceEEccCccchHHHHHH
Confidence 55654434567777777777763
No 29
>KOG3820|consensus
Probab=30.20 E-value=2.2e+02 Score=28.19 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=28.8
Q ss_pred hcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHH
Q psy10794 137 KSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVG 177 (273)
Q Consensus 137 ~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~ 177 (273)
...++|-.++|.++|.-.++-.. ..-.+.++..|+|.||+
T Consensus 226 ~ednIPQLeDVs~FLk~~TGF~l-RPvAGlLSaRDFLagLA 265 (461)
T KOG3820|consen 226 REDNIPQLEDVSKFLKKKTGFRL-RPVAGLLSARDFLAGLA 265 (461)
T ss_pred CCCCcchHHHHHHHHHhccCcee-ecccccCcHHHHHhhhh
Confidence 35789999999999976543110 01234799999999998
No 30
>KOG1666|consensus
Probab=28.55 E-value=2.9e+02 Score=24.99 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=40.3
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHH
Q psy10794 70 IFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEA 129 (273)
Q Consensus 70 If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA 129 (273)
|..++....++....|.+.++.+.++.+ ++.++-.++..-|.- +.+.+..-+++|=--
T Consensus 23 ~~~~~~~~~~ekk~~l~~i~~~leEa~e-ll~qMdlEvr~lp~~-~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 23 IGRALSLPGSEKKQLLSEIDSKLEEANE-LLDQMDLEVRELPPN-FRSSYLSKLREYKSD 80 (220)
T ss_pred HHHHhcCCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhCCch-hhhHHHHHHHHHHHH
Confidence 3444454445666778899999999998 898888877665533 366777777777543
No 31
>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response. B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.
Probab=28.19 E-value=1e+02 Score=22.78 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCC-CcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCC
Q psy10794 199 DCINATNTVRDLYVAMLASGVSR-VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP 254 (273)
Q Consensus 199 ~~~~i~~fm~~ly~~f~~L~lk~-n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~ 254 (273)
.|.+|+..++.+-+ +-+.. ....||-+|.++-+|.|.|..|+...---++-|
T Consensus 11 lp~~iq~aV~~~~~----~~~~~~p~~V~kDLdn~kaCL~K~e~T~~r~~~sLL~KP 63 (73)
T PF11473_consen 11 LPDRIQQAVEAAID----MSYQCAPNNVRKDLDNYKACLNKAEATVFRATDSLLSKP 63 (73)
T ss_dssp HHHHHHHHHHHHHC----S-GTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHc----CCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34566777766532 22222 347999999999999999999987765444443
No 32
>KOG0994|consensus
Probab=27.97 E-value=9.6e+02 Score=27.49 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10794 34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAEL 107 (273)
Q Consensus 34 ~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l 107 (273)
...+-.....+|+...+.-|++++.+|+....+.++-..-+|+. ++...-..++++..+++++ ++.+|..-+
T Consensus 1413 A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~-~~a~as~~q~~~s~~el~~-Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1413 ALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRAL-EQANASRSQMEESNRELRN-LIQQVRDFL 1484 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 33444567778888888889999999987766666665555542 2222233444444455555 555555433
No 33
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=26.68 E-value=96 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.8
Q ss_pred hhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794 169 PTEFVLGVGDLSGELMRYAIGSVA 192 (273)
Q Consensus 169 ~edYLlGL~DLtGELmR~ain~v~ 192 (273)
...-+.+.+||-|||||+..++..
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 567899999999999999877665
No 34
>KOG4025|consensus
Probab=25.41 E-value=4.6e+02 Score=22.96 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=10.3
Q ss_pred hhhHhhhhhhHHHHH
Q psy10794 112 LYQYIRAFSAGLQEF 126 (273)
Q Consensus 112 ~~ry~~~~s~~lQEy 126 (273)
|.+|+..+|+.+.+|
T Consensus 162 FVkYSK~FS~TLKtY 176 (207)
T KOG4025|consen 162 FVKYSKRFSNTLKTY 176 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777766665
No 35
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=25.39 E-value=4.4e+02 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTL 76 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~ 76 (273)
.++|+.++|.++.+.-.+|..|..+.|-
T Consensus 98 ~E~RkelvK~~k~~~E~aKv~iRniRr~ 125 (176)
T TIGR00496 98 EERRKELVKHAKKIAEQAKVAVRNVRRD 125 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999887764
No 36
>KOG4642|consensus
Probab=24.12 E-value=4e+02 Score=24.87 Aligned_cols=177 Identities=11% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCC
Q psy10794 64 IESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIG 143 (273)
Q Consensus 64 ~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit 143 (273)
-.-+++...|++-+++...+-|..|.+.. -+ .++...-+ ..-..-+..+..++..+++|.++ +....+..
T Consensus 46 Y~tnralchlk~~~~~~v~~dcrralql~---~N-~vk~h~fl---g~~~l~s~~~~eaI~~Lqra~sl---~r~~~~~~ 115 (284)
T KOG4642|consen 46 YYTNRALCHLKLKHWEPVEEDCRRALQLD---PN-LVKAHYFL---GQWLLQSKGYDEAIKVLQRAYSL---LREQPFTF 115 (284)
T ss_pred hhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hH-HHHHHHHH---HHHHHhhccccHHHHHHHHHHHH---HhcCCCCC
Confidence 34566777777655544444443333333 22 22111110 00111233455666677777654 45666666
Q ss_pred HHHHHHHHhhcC--CCccccccc--CCCChhHHHhhHH--hhHhHHHHHHHHHhhcCCchh-hHHHHHHHHHHHHHHHhh
Q psy10794 144 WDHVEQKMEELC--GPEAEESQV--KLLTPTEFVLGVG--DLSGELMRYAIGSVAAGSDST-DCINATNTVRDLYVAMLA 216 (273)
Q Consensus 144 ~eev~~~l~~~~--~~~~~~~~~--~~v~~edYLlGL~--DLtGELmR~ain~v~~G~d~~-~~~~i~~fm~~ly~~f~~ 216 (273)
-+++...|..-. .+++-+... -.+...+|+.++. |..-||+|.--|..... .+. --.-|++-.+.--..+.-
T Consensus 116 ~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N~~sde-~~k~~q~~~~~~~d~~~kel~e 194 (284)
T KOG4642|consen 116 GDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEWQENGESDE-HLKTMQVPIEQDHDHTTKELSE 194 (284)
T ss_pred cchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHcCCChH-HHhhhcchhHHHHHHHHHHHHH
Confidence 677766665332 121111111 1678889999986 34455777766632211 110 000122222222222333
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCC
Q psy10794 217 SGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSE 252 (273)
Q Consensus 217 L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle 252 (273)
++.+ .+.+|+|.+|..|.--||+--+.+--+++-.
T Consensus 195 lf~~-v~e~rk~rEvpd~lcgkIt~el~~~pvi~ps 229 (284)
T KOG4642|consen 195 LFSK-VDEKRKKREVPDYLCGKITLELMREPVITPS 229 (284)
T ss_pred HHHH-HHHHhccccccchhhhhhhHHhhcCCccCcc
Confidence 3333 6789999999999999998877776666644
No 37
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=22.79 E-value=4.5e+02 Score=23.61 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHhhHHhhHhHHHHHHHHHh------hcCCchhhHHHHHHHHHHHHHHHh
Q psy10794 171 EFVLGVGDLSGELMRYAIGSV------AAGSDSTDCINATNTVRDLYVAML 215 (273)
Q Consensus 171 dYLlGL~DLtGELmR~ain~v------~~G~d~~~~~~i~~fm~~ly~~f~ 215 (273)
.|..+++.-+|+|+=-.+..- ... ++-.++++.+++++|.....
T Consensus 111 ~Y~~~vAg~vg~l~~~llg~~~~~~~~~a~-~lG~AlqltnilRdv~eD~~ 160 (266)
T TIGR03465 111 LYCDRVAGAVGRLSARIFGATDARTLEYAH-HLGRALQLTNILRDVGEDAR 160 (266)
T ss_pred HHHHHhHHHHHHHHHHHhCCCChhHHHHHH-HHHHHHHHHHHHHHhHHHHh
Confidence 788888888887653222100 001 33477899999999987654
No 38
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.75 E-value=3.6e+02 Score=20.79 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=42.7
Q ss_pred hHHHhhHHhhHhHHHHHH--HHHhhcCCchh----hHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhh
Q psy10794 170 TEFVLGVGDLSGELMRYA--IGSVAAGSDST----DCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTV 243 (273)
Q Consensus 170 edYLlGL~DLtGELmR~a--in~v~~G~d~~----~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~ 243 (273)
..|+.|=...|.+..++- +|..+.. .|. .+..+..+++++-.-... ..+..+++|.+-.+|.++|.++
T Consensus 9 ~~~v~~el~~t~~d~~LLe~mN~~~~~-kY~~~~~~~~~l~~~~~~l~~k~~~-----l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 9 SKYVESELEATNEDYNLLENMNKATSL-KYKKMKDIAAGLEKNLEDLNQKYEE-----LQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666666653 4444444 432 222333344444332222 3467888999999999999999
Q ss_pred HhH
Q psy10794 244 YTV 246 (273)
Q Consensus 244 Ydl 246 (273)
|.|
T Consensus 83 ~~L 85 (99)
T PF10046_consen 83 YEL 85 (99)
T ss_pred HHH
Confidence 876
No 39
>KOG0058|consensus
Probab=22.59 E-value=6.2e+02 Score=26.94 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=27.8
Q ss_pred cCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHH
Q psy10794 138 SNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRY 186 (273)
Q Consensus 138 ~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ 186 (273)
...-+|..++..++-+ .+...+.+.++..+-+|||+=
T Consensus 398 ~~g~mt~g~L~sFllY------------~~~~g~sl~~ls~~ys~lmkg 434 (716)
T KOG0058|consen 398 LTGSLTSGALSSFLLY------------QVQLGSSLSGLSSFYSELMKG 434 (716)
T ss_pred hcCccchhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777666654 466778999999999999973
No 40
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=21.89 E-value=87 Score=26.38 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=33.4
Q ss_pred HhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCC
Q psy10794 177 GDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVS 220 (273)
Q Consensus 177 ~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk 220 (273)
++++.+|++..-..+..| ....+|.++|.+-|..+.+.++|
T Consensus 56 a~~A~dmR~~I~~~l~~G---~s~~eI~~~~v~rYG~~Vl~~Pp 96 (148)
T PF03918_consen 56 APIARDMRREIREMLAEG---KSDEEIIDYFVERYGEFVLYEPP 96 (148)
T ss_dssp SHHHHHHHHHHHHHHHHT-----HHHHHHHHHHHHTTT-EES--
T ss_pred cHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhcCcceeecCC
Confidence 889999999999999999 34579999999999999888765
No 41
>PF12246 MKT1_C: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022039 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the C-terminal region of MKT1.
Probab=21.81 E-value=2.8e+02 Score=25.01 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=38.5
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHH
Q psy10794 112 LYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVG 177 (273)
Q Consensus 112 ~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~ 177 (273)
|.-..+.+...+-+++||++.-.|+....--..++..++.. .-+|..++ +.++||+
T Consensus 107 F~s~v~~v~~~lr~L~E~il~s~ll~g~~~r~~~d~~~i~~---------~LPF~~~~-n~~mGi~ 162 (243)
T PF12246_consen 107 FRSHVRFVRRNLRDLIEAILASLLLSGEADRNRDDWSEISQ---------SLPFFLDP-NTGMGIL 162 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHH---------CCCCCCCC-chHHHHH
Confidence 34456777889999999999999998766667776654433 12344555 6666664
No 42
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=21.80 E-value=6.7e+02 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHHHHh
Q psy10794 189 GSVAAGSDSTDCINATNTVRDLYVAML 215 (273)
Q Consensus 189 n~v~~G~d~~~~~~i~~fm~~ly~~f~ 215 (273)
.||..| .|+++..+..+++.+...+.
T Consensus 115 ~ci~~g-~y~eALel~~~~~~L~~~~~ 140 (338)
T PF04124_consen 115 TCIRNG-NYSEALELSAHVRRLQSRFP 140 (338)
T ss_pred HHHhcc-cHhhHHHHHHHHHHHHHhcc
Confidence 778899 99999999999998876553
No 43
>PLN00160 histone H3; Provisional
Probab=21.75 E-value=1.3e+02 Score=23.71 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L 136 (273)
++.+++..+... .++|....-.++||-.||...--|=
T Consensus 30 LVREI~~~~~~~-~~Rfq~~Al~ALQeAsEayLv~lfe 66 (97)
T PLN00160 30 LVREIQMEMSRE-AYRWQGSAILALQEAAEAHLVGLFE 66 (97)
T ss_pred HHHHHHHHcCCC-CcEeeHHHHHHHHHHHHHHHHHHHh
Confidence 444555555433 3688888888999999998765443
No 44
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=2.9e+02 Score=22.29 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=36.9
Q ss_pred hhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhh
Q psy10794 178 DLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERT 242 (273)
Q Consensus 178 DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v 242 (273)
.++-||+|-+=+.-..+ +.++-+-|+++-+.+..+.-+..+.|+-++|.++.-|.++|+=
T Consensus 46 ~~vddl~~q~k~~~~e~-----e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 46 RFVDDLLRQAKEAQGEL-----EEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHhhhH-----HHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776433333 3344455555544443332222578999999999999998863
No 45
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=21.20 E-value=4e+02 Score=20.92 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q psy10794 57 KISRDITIESKRVIFLLHTLLR 78 (273)
Q Consensus 57 k~sRdIt~~SK~~If~LHR~~~ 78 (273)
..+.+|....-.+...+++.++
T Consensus 23 ~~~~~i~~~l~~i~~~i~~~dW 44 (121)
T PF14276_consen 23 NSTDSIEEQLEQIEEAIENEDW 44 (121)
T ss_pred hHHHHHHHHHHHHHHHHHhCCH
Confidence 3455555555556666666665
No 46
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.03 E-value=3.4e+02 Score=19.84 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10794 43 IIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-----SDTQKVLEEAESRLNILMQTHFKSIKAEL 107 (273)
Q Consensus 43 ~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-----~~~~~~l~~A~~~l~~i~~~~~~~La~~l 107 (273)
.-+++.++.+..|-++...|....+.--..|..... .+.+.+..++...+..|+. .++.|....
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~-~lk~l~~~~ 72 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKK-RLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 445667777777777777777665555555555431 2234455566666666776 676666653
No 47
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.54 E-value=2e+02 Score=23.55 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy10794 48 KQDKYERLVKISRDITIESKRVIFLLHTLLR 78 (273)
Q Consensus 48 ~~d~REriik~sRdIt~~SK~~If~LHR~~~ 78 (273)
....-.=+.+++|.|.--|+++..++||...
T Consensus 53 ~~~A~~LL~ei~rRIr~GS~RL~~al~r~~~ 83 (121)
T PF09543_consen 53 DEGAAALLREIRRRIRDGSRRLSRALHRMYR 83 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666777788888888888888754
No 48
>KOG3771|consensus
Probab=20.49 E-value=8.4e+02 Score=24.55 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHH-HHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10794 36 QEFRKYAIIMNTKQDKYERLVKISRDITIES-KRVIF-LLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLY 113 (273)
Q Consensus 36 ~~F~~~~~~Ld~~~d~REriik~sRdIt~~S-K~~If-~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ 113 (273)
.+...+...+-..-|++.+|.|..|.+.-+. .+--| .++.. .....+-+.+|++.|...+. .+..+..+|...=+-
T Consensus 109 ~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~-k~kd~~k~~KAeeEl~~Aq~-~fE~lN~~L~eELP~ 186 (460)
T KOG3771|consen 109 QVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAK-KKKDEAKLAKAEEELEKAQQ-VFEELNNELLEELPA 186 (460)
T ss_pred hhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHh-cCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455666777777788888888888754443 22222 33332 23344445667777776666 555444444322112
Q ss_pred hH---hhhhhhHHHHHHHHHHHHHHhh
Q psy10794 114 QY---IRAFSAGLQEFIEAYTFLHYLK 137 (273)
Q Consensus 114 ry---~~~~s~~lQEyvEA~sf~~~L~ 137 (273)
.| -++|.+.+|.++.+-.-+|+-.
T Consensus 187 L~~sRv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 187 LYSSRVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred HHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 23 4566778888887776666543
No 49
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=20.33 E-value=4.5e+02 Score=20.95 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=41.5
Q ss_pred hHhHHHHHHHHHhhcCCchhhHHHHHH--------HHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhC
Q psy10794 179 LSGELMRYAIGSVAAGSDSTDCINATN--------TVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRG 250 (273)
Q Consensus 179 LtGELmR~ain~v~~G~d~~~~~~i~~--------fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRg 250 (273)
|+||-.+..-.....+.+|+.++.++. .+..+...|..+... -..-...|+..+.+++..+..+.-.|
T Consensus 38 L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~~----~~~d~~~L~~~~~~v~~~i~~L~~lg 113 (145)
T PF03564_consen 38 LKGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLPPI----SNDDPEALRSLVDKVNNCIRALKALG 113 (145)
T ss_pred hcchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhccccc----cchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 455544433332222226666666552 345555555444321 12235677778888888888887777
Q ss_pred CCCChhhhhh
Q psy10794 251 SEMPRHVIAH 260 (273)
Q Consensus 251 le~~~~~~~~ 260 (273)
-..-..++-.
T Consensus 114 ~~~~~~~l~~ 123 (145)
T PF03564_consen 114 VNVDDPLLIS 123 (145)
T ss_pred CCCCCHHHHH
Confidence 5444333333
No 50
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=20.29 E-value=3.6e+02 Score=25.49 Aligned_cols=52 Identities=25% Similarity=0.193 Sum_probs=43.3
Q ss_pred hhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcch
Q psy10794 169 PTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEA 225 (273)
Q Consensus 169 ~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~L 225 (273)
..++..-+.|..|++.+=+...+..+ |.+ .+-+.|+.-+..+..|+.. ++.|
T Consensus 198 ~~~~~~~~~~~ig~~~~~a~~al~~~-d~e---~lgelm~~nq~LL~~LgVs-~~~L 249 (307)
T COG1577 198 EPEVIDPILDAIGELVQEAEAALQTG-DFE---ELGELMNINQGLLKALGVS-TPEL 249 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc-cHH---HHHHHHHHHHHHHHhcCcC-cHHH
Confidence 35778889999999999999999999 877 7788999989889999874 4444
No 51
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=20.24 E-value=5.3e+02 Score=21.69 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10794 50 DKYERLVKISRDITIESKRVIFLLHTL 76 (273)
Q Consensus 50 d~REriik~sRdIt~~SK~~If~LHR~ 76 (273)
+.|+.+++.+..+.-.+|..|..+.+-
T Consensus 90 E~R~~l~k~~k~~~E~~k~~iR~iR~~ 116 (165)
T PF01765_consen 90 ERRKELVKQAKKIAEEAKVSIRNIRRD 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888887764
No 52
>PTZ00018 histone H3; Provisional
Probab=20.13 E-value=1.4e+02 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L 136 (273)
++.+|+.++.. .++|....-.+|||-+|+.+..-|=
T Consensus 71 LVREI~~~~~~--~~rf~~~al~aLQeaaE~yLv~lfe 106 (136)
T PTZ00018 71 LVREIAQDFKT--DLRFQSSAVLALQEAAEAYLVGLFE 106 (136)
T ss_pred HHHHHHHHcCC--cceeeHHHHHHHHHHHHHHHHHHhh
Confidence 44555555543 3688888888999999998765553
No 53
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.08 E-value=5e+02 Score=21.33 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy10794 52 YERLVKISRDITIESKRVIFLLHTLLR 78 (273)
Q Consensus 52 REriik~sRdIt~~SK~~If~LHR~~~ 78 (273)
-.=+.+++|.|.--|+++..++||...
T Consensus 59 ~~LL~e~~rRir~GS~RL~~Al~r~~~ 85 (123)
T TIGR02267 59 LALLKEISRRIRVGSRRLSRALTEAIR 85 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888889999999998743
Done!