Query psy10794
Match_columns 273
No_of_seqs 118 out of 403
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 6.4E-76 2.2E-80 541.3 25.6 256 5-266 7-280 (290)
2 3axj_B TRAX, translin associat 100.0 5.6E-70 1.9E-74 503.4 25.2 250 2-261 3-285 (298)
3 1j1j_A Translin; testis/brain 100.0 8E-68 2.7E-72 475.9 26.2 217 31-254 12-232 (240)
4 3axj_A GM27569P, translin; tra 100.0 1.6E-66 5.6E-71 469.5 26.0 219 30-255 16-236 (249)
5 2v27_A Phenylalanine hydroxyla 53.1 35 0.0012 30.5 7.1 67 99-178 31-97 (275)
6 3hnw_A Uncharacterized protein 47.7 65 0.0022 25.6 7.3 68 168-248 25-96 (138)
7 3ajm_A Programmed cell death p 45.1 76 0.0026 27.3 7.7 16 112-127 160-175 (213)
8 1mlw_A Tryptophan 5-monooxygen 41.4 47 0.0016 30.1 6.1 56 122-178 88-146 (301)
9 2kw0_A CCMH protein; oxidoredu 39.0 20 0.00068 26.8 2.7 41 177-220 39-79 (90)
10 1gak_A SP18, fertilization pro 38.7 17 0.00057 29.0 2.3 29 49-77 50-78 (141)
11 1j8u_A Phenylalanine-4-hydroxy 38.5 50 0.0017 30.3 5.8 56 122-178 100-158 (325)
12 1q2z_A ATP-dependent DNA helic 37.3 59 0.002 25.1 5.4 59 81-147 39-102 (120)
13 1toh_A Tyroh, tyrosine hydroxy 36.9 56 0.0019 30.1 5.9 56 122-178 93-151 (343)
14 2hl7_A Cytochrome C-type bioge 34.2 26 0.00088 25.8 2.6 41 177-220 42-82 (84)
15 3tk2_A Phenylalanine-4-hydroxy 33.8 93 0.0032 28.1 6.8 67 99-178 52-118 (302)
16 3g80_A Protein B2; RNA-binding 32.8 1.3E+02 0.0044 22.4 6.2 55 199-254 33-87 (97)
17 1ztd_A Hypothetical protein PF 29.8 1.9E+02 0.0064 22.5 7.0 61 122-191 68-128 (133)
18 3nqj_A Histone H3-like centrom 29.2 45 0.0015 24.4 3.2 38 99-136 12-49 (82)
19 3m00_A Aristolochene synthase; 27.4 4.3E+02 0.015 25.6 11.0 54 93-147 342-396 (550)
20 1phz_A Protein (phenylalanine 27.1 83 0.0028 29.9 5.5 56 122-178 202-260 (429)
21 1vh6_A Flagellar protein FLIS; 26.7 1.7E+02 0.0059 23.2 6.7 30 79-109 97-126 (145)
22 4gfq_A Ribosome-recycling fact 25.7 3E+02 0.01 23.4 8.3 28 49-76 131-158 (209)
23 2hue_B Histone H3; mini beta s 25.6 61 0.0021 23.3 3.4 36 99-136 12-47 (77)
24 1is1_A Ribosome recycling fact 25.5 2.9E+02 0.0099 22.9 8.3 56 49-104 107-172 (185)
25 1dd5_A Ribosome recycling fact 25.3 2.9E+02 0.01 22.9 8.3 55 49-103 107-171 (185)
26 1wqg_A Ribosome recycling fact 25.2 2.9E+02 0.01 22.9 8.3 55 49-103 107-171 (185)
27 1ise_A Ribosome recycling fact 24.8 3E+02 0.01 22.9 8.3 55 49-103 107-171 (185)
28 3lhp_S 4E10_D0_1ISEA_004_N (T9 24.7 2.4E+02 0.0081 22.1 6.9 70 36-105 22-111 (123)
29 2yfa_A MCPS, methyl-accepting 23.8 3E+02 0.01 22.6 12.5 28 81-109 169-196 (258)
30 1eh1_A Ribosome recycling fact 23.2 3.1E+02 0.011 22.8 7.8 28 49-76 108-135 (185)
31 3r45_A Histone H3-like centrom 23.0 60 0.0021 26.6 3.2 37 99-135 86-122 (156)
32 3acx_A Dehydrosqualene synthas 23.0 2.5E+02 0.0084 24.4 7.6 69 122-215 109-184 (293)
33 3nqu_A Histone H3-like centrom 22.8 61 0.0021 26.1 3.2 37 99-135 70-106 (140)
34 3fyq_A CG6831-PA (talin); 5-he 21.7 3.7E+02 0.013 22.7 9.6 83 46-130 40-128 (199)
35 3lf9_A 4E10_D0_1IS1A_001_C (T1 21.2 3E+02 0.01 21.5 8.3 68 38-105 17-101 (121)
36 2k0n_A Mediator of RNA polymer 21.2 1.6E+02 0.0055 21.4 4.8 50 188-239 26-79 (85)
37 3op9_A PLI0006 protein; struct 20.6 1.8E+02 0.006 21.0 5.3 21 131-151 38-58 (114)
38 1ge9_A Ribosome recycling fact 20.6 3.7E+02 0.013 22.3 7.8 75 30-104 74-171 (184)
39 4fla_A Regulation of nuclear P 20.0 3.4E+02 0.012 21.7 9.1 63 40-111 86-148 (152)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=6.4e-76 Score=541.34 Aligned_cols=256 Identities=38% Similarity=0.619 Sum_probs=212.8
Q ss_pred ccccccccCCCCCCcCCCCccc--ccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCh
Q psy10794 5 GFRDRRRKDQSSTNVNIGGKKN--LIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDT 81 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-~~~ 81 (273)
++|-|+|| |+|+|+++++. .+++++++.++|+.|+++||++||+||+|+|+|||||++||++||+|||+++ +++
T Consensus 7 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~ 83 (290)
T 3qb5_K 7 SGGFRKRK---HDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDM 83 (290)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred CCccccCC---CCCCccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 34444444 67788886654 7899999999999999999999999999999999999999999999999987 568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCccc-
Q psy10794 82 QKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAE- 160 (273)
Q Consensus 82 ~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~- 160 (273)
+++|++|.+.|.++++ ++++|+++++++++|+|+++|++++||||||++|++||++++|||++||++.|+++..++.+
T Consensus 84 ~~il~ea~~~L~~i~~-~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~ 162 (290)
T 3qb5_K 84 EDILTESEIKLDGVRQ-KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKE 162 (290)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999987533210
Q ss_pred -------------ccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCc-chh
Q psy10794 161 -------------ESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK-EAS 226 (273)
Q Consensus 161 -------------~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~-~LR 226 (273)
....++|+++|||+||+||||||||||||+|+.| |+++|++|++||++||++|++||+| |+ +||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~V~~eDYLlGL~DLtGELmR~ainsv~~G-d~~~~~~i~~fm~~Ly~gf~~L~~~-~~~~Lr 240 (290)
T 3qb5_K 163 NKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNT-GPYEVS 240 (290)
T ss_dssp --------------CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHHHGGG-SCHHHH
T ss_pred cccccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCC-CChhhh
Confidence 0113799999999999999999999999999999 9999999999999999999999998 66 999
Q ss_pred hhHHHHHHHHHHHHhhhHhHHHhCCCCChhhhhhhhhccc
Q psy10794 227 RKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESE 266 (273)
Q Consensus 227 kK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~~~~~~~~~~ 266 (273)
||+|+|||||+|||++||+|+|||+|.|++|++||++++.
T Consensus 241 KK~d~lk~svkKvE~v~Ydl~vRg~e~pk~~~~d~~~~~~ 280 (290)
T 3qb5_K 241 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKT 280 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHhhheeeecCCCCcccchhhhcCCC
Confidence 9999999999999999999999999999999999997753
No 2
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=5.6e-70 Score=503.35 Aligned_cols=250 Identities=39% Similarity=0.657 Sum_probs=213.8
Q ss_pred CCcccccccccCCCCCCcCCCCcc--cccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q psy10794 2 SNRGFRDRRRKDQSSTNVNIGGKK--NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR- 78 (273)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~- 78 (273)
+|||+|.|+|| |..+.+ +++++++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||+|+
T Consensus 3 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~ 75 (298)
T 3axj_B 3 KNGGAGHRNTA-------PRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSR 75 (298)
T ss_dssp ---------------------------CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred CCCCCccccCC-------CCCCcccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46677777755 333222 37899999999999999999999999999999999999999999999999997
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhh---c------CCCCCHHHHH
Q psy10794 79 -SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLK---S------NHLIGWDHVE 148 (273)
Q Consensus 79 -~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~---~------~~Lit~eev~ 148 (273)
.+.+++|++|.+.|.+++++++++|+.+++++++|+|++.|++++||||||++|++||+ + ++|+|++||+
T Consensus 76 ~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~ 155 (298)
T 3axj_B 76 KQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQ 155 (298)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHH
Confidence 77899999999999999875779999999999999999999999999999999999999 8 9999999999
Q ss_pred HHHhhcCCCcc-------------------cccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q psy10794 149 QKMEELCGPEA-------------------EESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRD 209 (273)
Q Consensus 149 ~~l~~~~~~~~-------------------~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ 209 (273)
+.|+++..++. .....++|+++|||+||+||||||||||||+|+.| |+++|++|+.||++
T Consensus 156 ~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~G-d~~~~~~i~~fm~~ 234 (298)
T 3axj_B 156 AVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSG-DTDTCLDTCKALQH 234 (298)
T ss_dssp HHCEEECCCC--------------------CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhcc-chHhHHHHHHHHHH
Confidence 99998653100 01125799999999999999999999999999999 99999999999999
Q ss_pred HHHHHhhcCCCCC-cchhhhHHHHHHHHHHHHhhhHhHHHhCCCCChhhhhhh
Q psy10794 210 LYVAMLASGVSRV-KEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHV 261 (273)
Q Consensus 210 ly~~f~~L~lk~n-~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~~~~~ 261 (273)
||++|++||+| | ++||||+|+|||+|+|||+|||+++|||+|.| .|.+-+
T Consensus 235 Ly~gf~~Lnlk-n~~~LRKK~D~lk~svkKvE~v~Ydl~vRg~e~~-~~~~~~ 285 (298)
T 3axj_B 235 FYSGYISLNCQ-RARELWRKITTMKQSVLKAENVCYNVKVRGGEAA-KWGATF 285 (298)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HTC---
T ss_pred HHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHheecCCCcc-cccccc
Confidence 99999999998 6 99999999999999999999999999999987 554433
No 3
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=8e-68 Score=475.87 Aligned_cols=217 Identities=20% Similarity=0.313 Sum_probs=205.4
Q ss_pred CChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10794 31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAE 106 (273)
Q Consensus 31 ~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~----~~~~~~l~~A~~~l~~i~~~~~~~La~~ 106 (273)
.|++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++. .+.+++|++|++.|.++++ .+++|+++
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~ 90 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK 90 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 799999999999999999999999999999999999999999999983 4588999999999999999 99999999
Q ss_pred hcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHH
Q psy10794 107 LVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRY 186 (273)
Q Consensus 107 l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ 186 (273)
++++|+|+|++.|++++||||||++|++||++++|+|++|+++.|+++.+. ...++|+++|||+||+|||||||||
T Consensus 91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~----~~~f~v~~edYLlGL~DltGEL~R~ 166 (240)
T 1j1j_A 91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDR----EKGFHLDVEDYLSGVLILASELSRL 166 (240)
T ss_dssp SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSS----SSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCccc----cccCcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986532 3568999999999999999999999
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCC
Q psy10794 187 AIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP 254 (273)
Q Consensus 187 ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~ 254 (273)
|||+|+.| |++.|++|++||++||++|++||+| |++||||+|++||+|+|||++||+++|||+++.
T Consensus 167 avn~v~~G-d~~~~~~i~~fm~~Ly~~f~~Lnl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~~~ 232 (240)
T 1j1j_A 167 SVNSVTAG-DYSRPLHISTFINELDSGFRLLNLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKE 232 (240)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHHHTTCCCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHhcC-ChHhHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 99999999 9999999999999999999999998 899999999999999999999999999999754
No 4
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=1.6e-66 Score=469.51 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=207.6
Q ss_pred CCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10794 30 ENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAEL 107 (273)
Q Consensus 30 ~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~--~~~~~~l~~A~~~l~~i~~~~~~~La~~l 107 (273)
++|++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||+++ .+.++++++|.+.|.++++ .+++|++++
T Consensus 16 ~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l 94 (249)
T 3axj_A 16 SNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELV 94 (249)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3478899999999999999999999999999999999999999999986 4578899999999999999 999999999
Q ss_pred cCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHH
Q psy10794 108 VGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYA 187 (273)
Q Consensus 108 ~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~a 187 (273)
+++|+|+|++.|++++||||||++|++||++++|+|++|+++.|+++... ...++|+++|||+||+||||||||||
T Consensus 95 ~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~----~~~f~v~~edYLlGL~DLtGEL~R~a 170 (249)
T 3axj_A 95 PAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLKISQ----SEGFHLDVEDYLLGILQLASELSRFA 170 (249)
T ss_dssp CTTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCBSST----TTSSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccCC----CcccccCHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999987542 35689999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCCh
Q psy10794 188 IGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPR 255 (273)
Q Consensus 188 in~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~ 255 (273)
||+|+.| |++.|++|++||++||++|++||+| |++||||+|++||+|+|||++||+++|||+.+++
T Consensus 171 in~v~~G-d~~~~~~i~~fm~~Ly~~f~~Ln~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~~~~~ 236 (249)
T 3axj_A 171 TNSVTMG-DYERPLNISHFIGDLNTGFRLLNLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKE 236 (249)
T ss_dssp HHHHHTT-CCSHHHHHHHHHHHHHHHHHHTCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Confidence 9999999 9999999999999999999999998 8999999999999999999999999999995443
No 5
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=53.05 E-value=35 Score=30.54 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
+++++...+++. |-+||.+++-... +...++|..++|++.|.-.+++..- .-.+-|++.+++.+|++
T Consensus 31 l~~r~~~l~~~~-----------Ac~eyl~gl~~Lg-l~~d~IPql~dvn~~L~~~TGw~~~-pV~Gli~~~~Ff~~LA~ 97 (275)
T 2v27_A 31 LFTRQIACIKDK-----------ACDEYHEGLAKLN-LPTDRIPQLDEVSKVLKVSTGWECY-PVPALIGFGEFFRLLSE 97 (275)
T ss_dssp HHHHHHHHHTTT-----------BCHHHHHHHHHHC-CCSSSCCCHHHHHHHHHHHHSCEEE-EECSCCCHHHHHHHHHT
T ss_pred HHHHHHHHhhhh-----------hhHHHHHHHHHcC-CCCCCCCCHHHHHHHHHhccCCEEe-eccccCCHHHHHHHHhc
Confidence 555666666654 6678888877765 4668999999999999877665321 12347899999999885
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.69 E-value=65 Score=25.65 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=44.0
Q ss_pred ChhHHHhhHHhhHhHHHHHHHHH--hhcCCchhh--HHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhh
Q psy10794 168 TPTEFVLGVGDLSGELMRYAIGS--VAAGSDSTD--CINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTV 243 (273)
Q Consensus 168 ~~edYLlGL~DLtGELmR~ain~--v~~G~d~~~--~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~ 243 (273)
..++||..++..+.+=||-.-.. ...- +.++ .+..+++..+++ .++++.+.++..++..++-+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l-~~~r~aVLaALNiadEl~------------k~~~~~~~L~~~l~~~~kE~ 91 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRM-SAELRTDMMYLNIADDYF------------KAKKMADSLSLDIENKDKEI 91 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTS-CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999887633 3332 2222 222233444443 45677778888888777777
Q ss_pred HhHHH
Q psy10794 244 YTVKV 248 (273)
Q Consensus 244 Ydl~i 248 (273)
|+++-
T Consensus 92 ~~lK~ 96 (138)
T 3hnw_A 92 YDLKH 96 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 7
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=45.11 E-value=76 Score=27.29 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=13.4
Q ss_pred hhhHhhhhhhHHHHHH
Q psy10794 112 LYQYIRAFSAGLQEFI 127 (273)
Q Consensus 112 ~~ry~~~~s~~lQEyv 127 (273)
|.+|+..+|..|.||-
T Consensus 160 FVkySKrFS~TLKeYF 175 (213)
T 3ajm_A 160 FVKYSKSFSDTLKTYF 175 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHhhHHHHHHH
Confidence 7789999998888873
No 8
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*
Probab=41.41 E-value=47 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHH-HH--hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFL-HY--LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~-~~--L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|-+||++++... .. +...++|..++|++.|.-.+++..- .-.+-|++.+++-+|++
T Consensus 88 Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~-pV~Gli~~~~F~~~LA~ 146 (301)
T 1mlw_A 88 ACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIR-PVAGYLSPRDFLSGLAF 146 (301)
T ss_dssp BCHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHTSCEEE-ECSSBCCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEE-ecCccCCHHHHHHHHhc
Confidence 568888888666 22 4678999999999999877765321 12347889999998874
No 9
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=38.96 E-value=20 Score=26.81 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=36.3
Q ss_pred HhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCC
Q psy10794 177 GDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVS 220 (273)
Q Consensus 177 ~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk 220 (273)
++++.+|++..-..+..| + .-.+|.+||-+=|..|.++.+|
T Consensus 39 A~iA~dlR~~Vre~l~~G-~--Sd~eI~~~mv~RYGdfVly~Pp 79 (90)
T 2kw0_A 39 SMIATDLRQKVYELMQEG-K--SKKEIVDYMVARYGNFVTYDPP 79 (90)
T ss_dssp CHHHHHHHHHHHHHHHHT-C--CHHHHHHHHHHHHTTTCBCSCC
T ss_pred cHHHHHHHHHHHHHHHcC-C--CHHHHHHHHHHhcCCeEEeeCC
Confidence 378999999999999999 4 4568999999999999999987
No 10
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=38.68 E-value=17 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLL 77 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~ 77 (273)
-=-|||+++.+++-++.||++|-+=|+--
T Consensus 50 y~nreRlm~~C~~y~~~Skkii~L~~~~l 78 (141)
T 1gak_A 50 KVNRERMMRYCMDYARYSKKILQLKHLPV 78 (141)
T ss_dssp HHHHHHHHHBHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34699999999999999999998777754
No 11
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=38.46 E-value=50 Score=30.25 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHH-HH--hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFL-HY--LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~-~~--L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|-+||.+++... .. +...++|..++|++.|.-.+++..- .-.+-|++.+++-+|++
T Consensus 100 Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~-pV~Gli~~~~F~~~LA~ 158 (325)
T 1j8u_A 100 ACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLR-PVAGLLSSRDFLGGLAF 158 (325)
T ss_dssp BCHHHHHHHHHHHHHHCCBTTBCCCHHHHHHHHHHHHSCEEE-ECCSCCCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEE-eccccCCHHHHHHHHhc
Confidence 668888888666 33 4678999999999999876655311 12347899999999884
No 12
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=37.25 E-value=59 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHH---HHHHHHhhcC--CCCCHHHH
Q psy10794 81 TQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEA---YTFLHYLKSN--HLIGWDHV 147 (273)
Q Consensus 81 ~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA---~sf~~~L~~~--~Lit~eev 147 (273)
....+.+|.+.|..+|+. -+.-..++.|+.+.. .|.+.+.+ ..|+.++..+ .|||.+|.
T Consensus 39 ~~~~y~ka~ecl~~~R~~-------~i~~~ep~~yN~Fl~-~Lk~~~~~~~l~~FW~~iv~~~lgLI~~~E~ 102 (120)
T 1q2z_A 39 ETPYFMKSIDCIRAFREE-------AIKFSEEQRFNNFLK-ALQEKVEIKQLNHFWEIVVQDGITLITKEEA 102 (120)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHSCHHHHHHHHH-HHHHHHHTTSTTHHHHHHHHTTCCSCCSTTS
T ss_pred ccchHHHHHHHHHHHHHH-------HHhccChHHHHHHHH-HHHHHHHhhhHHHHHHHHHHCCcCCCcHhhc
Confidence 445678888888888872 222245677876654 67665544 4677777654 45665554
No 13
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=36.88 E-value=56 Score=30.11 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHH-HH--hhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFL-HY--LKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~-~~--L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|-+||.+++... .. +...++|..++|++.|.-.+++..- .-.+-|++.+++-+|++
T Consensus 93 Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~-pV~Gli~~~~Ff~~LA~ 151 (343)
T 1toh_A 93 ACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKERTGFQLR-PVAGLLSARDFLASLAF 151 (343)
T ss_dssp BCHHHHHHHHHHHHHSCCBTTBCCCHHHHHHHHHHHTSCEEE-ECSSCCCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEE-ecCccCCHHHHHHHHhc
Confidence 668888888766 32 4678999999999999877765321 12348999999999883
No 14
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=34.21 E-value=26 Score=25.82 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=35.6
Q ss_pred HhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCC
Q psy10794 177 GDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVS 220 (273)
Q Consensus 177 ~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk 220 (273)
++++.+|++..-..+..| + .-.+|.+||-+=|..|.++++|
T Consensus 42 a~iA~dlR~~V~~~l~~G-~--sd~eI~~~~v~RYG~fVly~Pp 82 (84)
T 2hl7_A 42 APIAADLRKQIYGQLQQG-K--SDGEIVDYMVARYGDFVRYKPP 82 (84)
T ss_dssp SHHHHHHHHHHHHHHHHT-C--CHHHHHHHHHHHHTTTCEECCC
T ss_pred cHHHHHHHHHHHHHHHcC-C--CHHHHHHHHHHhcCCeeeeeCC
Confidence 378999999999999999 4 4568999999999999998875
No 15
>3tk2_A Phenylalanine-4-hydroxylase; protein-substate complex, mixed alpha, beta, tetrahydrobiopterin, iron (II), molecular OX hydroxylation; HET: PHE; 1.35A {Chromobacterium violaceum} PDB: 3tk4_A 3tcy_A* 1ltz_A* 1ltv_A 1ltu_A*
Probab=33.77 E-value=93 Score=28.14 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
++.++...++++ |-+||.+++--+. +...++|..++|++.|.-.+.+.. ..-.+.|++.+++-+|+.
T Consensus 52 l~~r~~~l~~~~-----------Ac~eyl~gl~~l~-~~~d~IPql~~vn~~L~~~TGw~l-~pV~Gli~~~~Ff~~LA~ 118 (302)
T 3tk2_A 52 LYQRQCKLLPGR-----------ACDEFMEGLERLE-VDADRVPDFNKLNQKLMAATGWKI-VAVPGLIPDDVFFEHLAN 118 (302)
T ss_dssp HHHHHHHHCTTT-----------BCHHHHHHHHHTT-CCSSSCCCHHHHHHHHHHHHSCEE-EEESSSCCHHHHHHHHHT
T ss_pred HHHHHHHHhhch-----------hhHHHHHHHHHcC-CCcccCCCHHHHHHHHHhhcCcEE-EecCccCCHHHHHHHHhc
Confidence 455666666654 5667777766554 456899999999999976665531 012347888888888874
No 16
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=32.82 E-value=1.3e+02 Score=22.38 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCC
Q psy10794 199 DCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP 254 (273)
Q Consensus 199 ~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~ 254 (273)
.|.++-+.....-.....|-+- .+..+|-+|.++..|.|.|..+|..+---++.|
T Consensus 33 lP~~l~qv~q~~v~ai~sl~~q-DpnV~kDLdn~~acL~k~~~t~~rat~SLL~Kp 87 (97)
T 3g80_A 33 LPAKLEQLAQETQATIQTLMIA-DPNVNKDLRAFCEFLTVQHQRAYRATNSLLIKP 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4555665666666666677665 468999999999999999999998765544443
No 17
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=29.84 E-value=1.9e+02 Score=22.51 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHh
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSV 191 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v 191 (273)
|=-+++||+.-|.||+. .+|.+|..++|.-....+ ..+.+--- -.|+-..|||.+..-..+
T Consensus 68 ~kGd~aEA~iAyAWleG--~is~eEaveilk~nl~~d-----v~hfsrkK--E~iG~A~~~ll~~i~eRL 128 (133)
T 1ztd_A 68 AKGDYAEALIAKAWLMG--LISEREAVEIIKKNLYPE-----VLDFSKKK--EAIGRALAPLLVIISERL 128 (133)
T ss_dssp CHHHHHHHHHHHHHHTT--SSCHHHHHHHHHTTCCGG-----GGCTTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhc--cccHHHHHHHHHhcCcHh-----hcchhHHH--HHHHHHHHHHHHHHHHHH
Confidence 44689999999999984 789999988886433221 11222222 245556788877664443
No 18
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=29.19 E-value=45 Score=24.39 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L 136 (273)
++++++..+.....++|+...-.++||..|+...--|=
T Consensus 12 LVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfe 49 (82)
T 3nqj_A 12 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 49 (82)
T ss_dssp HHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554335788888888999999998765543
No 19
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=27.40 E-value=4.3e+02 Score=25.60 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHH-HHHhhcCCCCCHHHH
Q psy10794 93 NILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTF-LHYLKSNHLIGWDHV 147 (273)
Q Consensus 93 ~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf-~~~L~~~~Lit~eev 147 (273)
..+-+ .+.+++.++.....+.-......+.++|+.|..- ..|..+|.+||.+|-
T Consensus 342 ~al~~-~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 396 (550)
T 3m00_A 342 KAILD-LYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396 (550)
T ss_dssp HHHHH-HHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHH-HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 33444 4556655553332111122334566777777654 678888999999886
No 20
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=27.08 E-value=83 Score=29.87 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHH---HhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHh
Q psy10794 122 GLQEFIEAYTFLH---YLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGD 178 (273)
Q Consensus 122 ~lQEyvEA~sf~~---~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~D 178 (273)
|.+||.+++-... =+...++|..++|++.|.-.+++.. ..-.+.|++.+++-+|++
T Consensus 202 Ac~eyl~gl~~L~~~~g~~~d~IPql~~vs~~L~~~TGw~~-~pV~gli~~~~F~~~LA~ 260 (429)
T 1phz_A 202 ACYEHNHIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRL-RPVAGLLSSRDFLGGLAF 260 (429)
T ss_dssp BCHHHHHHHHHHHHHSCCBTTBCCCHHHHHHHHHHHHSCEE-EECSSCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEE-EeccccCCHHHHHHHHhc
Confidence 5688888876653 2456799999999999987665531 112347999999999884
No 21
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=26.66 E-value=1.7e+02 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy10794 79 SDTQKVLEEAESRLNILMQTHFKSIKAELVG 109 (273)
Q Consensus 79 ~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~ 109 (273)
.+-.+.++++...+.++++ -|.++.+....
T Consensus 97 ~~D~~~ldev~~ll~~Lre-aW~~i~~~~~~ 126 (145)
T 1vh6_A 97 KNDTGMLAEVEGYVTDFRD-AWKQAIQSERK 126 (145)
T ss_dssp HTCHHHHHHHHHHHHHHHH-HHHHHC-----
T ss_pred hCCHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 4446677888888888888 78877665544
No 22
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=25.71 E-value=3e+02 Score=23.43 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTL 76 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~ 76 (273)
.++|+.++|.++...-.+|-.|..+-|-
T Consensus 131 eErRkelvK~ak~~~E~aKvaIRniRrd 158 (209)
T 4gfq_A 131 EERRRDLVKVVKKYAEEAKVAVRNVRRD 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999887763
No 23
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=25.61 E-value=61 Score=23.34 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHh
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L 136 (273)
++++++..+.+. ++|+...-.++||..|++..--|=
T Consensus 12 LVRei~~~~~~~--~R~q~~Al~aLQea~Eaylv~lfe 47 (77)
T 2hue_B 12 LVREIAQDFKTD--LRFQSSAVMALQEASEAYLVALFE 47 (77)
T ss_dssp HHHHHHHTTCSS--CEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcc--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 455666666553 788888888999999998765443
No 24
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=25.50 E-value=2.9e+02 Score=22.93 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHHHHHHHHHHH
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNILMQTHFKSIK 104 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i~~~~~~~La 104 (273)
.++|..++|.++...-.+|-.|..+.|-.. .-.+.....+++.++.+.++.++++-
T Consensus 107 eErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1is1_A 107 EERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKID 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999988766322 11234455566666666654444443
No 25
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=25.26 E-value=2.9e+02 Score=22.91 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHHHHHHHHHH
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNILMQTHFKSI 103 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i~~~~~~~L 103 (273)
.++|+.++|.++...-.+|-.|..+.|-.. .-.+.....+++.++.+.++.++++
T Consensus 107 eErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1dd5_A 107 TEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKL 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999988766422 1123334455666666655444444
No 26
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=25.24 E-value=2.9e+02 Score=22.90 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHHHHHHHHHH
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNILMQTHFKSI 103 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i~~~~~~~L 103 (273)
.++|+.++|.++...-.+|-.|..+.|-.. .-.+.....+++.++.+.++.++++
T Consensus 107 eErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1wqg_A 107 EERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988766422 1123344556666666655444444
No 27
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=24.84 E-value=3e+02 Score=22.86 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHHHHHHHHHH
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNILMQTHFKSI 103 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i~~~~~~~L 103 (273)
.++|..++|.++...-.+|-.|..+.|-.. .-.+.....+++.++.+.+..++++
T Consensus 107 eErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1ise_A 107 EERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999998888766322 1123344556666666655444444
No 28
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=24.67 E-value=2.4e+02 Score=22.11 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHH
Q psy10794 36 QEFRKYAIIMNTK----------QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNIL 95 (273)
Q Consensus 36 ~~F~~~~~~Ld~~----------~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i 95 (273)
...+.+.+.+|.. .++|..++|.++...-.+|-+|..+.|--. .-.+.....++..++.+
T Consensus 22 ~~~~~~~n~~~~~~~~IRl~iPTEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKL 101 (123)
T 3lhp_S 22 KAVEAFKNKLDKFKAAVRKVFPTEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKL 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Confidence 3445555555554 478999999999999999999988877311 01122345556666666
Q ss_pred HHHHHHHHHH
Q psy10794 96 MQTHFKSIKA 105 (273)
Q Consensus 96 ~~~~~~~La~ 105 (273)
.+..++++-.
T Consensus 102 TDkyIkkID~ 111 (123)
T 3lhp_S 102 TDAAIKKIEA 111 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6544444433
No 29
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=23.83 E-value=3e+02 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy10794 81 TQKVLEEAESRLNILMQTHFKSIKAELVG 109 (273)
Q Consensus 81 ~~~~l~~A~~~l~~i~~~~~~~La~~l~~ 109 (273)
.++..+.+...+..+.. .+..|...+++
T Consensus 169 ~~~~~~~~~~~~~~~~~-~l~~L~~~l~~ 196 (258)
T 2yfa_A 169 SSANEQAALRQLDAALA-DTDNLKRQLPS 196 (258)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHhhcCc
Confidence 34555666666666666 66666666653
No 30
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=23.16 E-value=3.1e+02 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10794 49 QDKYERLVKISRDITIESKRVIFLLHTL 76 (273)
Q Consensus 49 ~d~REriik~sRdIt~~SK~~If~LHR~ 76 (273)
.++|+.++|.++...-.+|-.|..+.|-
T Consensus 108 eErRkelvK~~k~~~E~aKvaiRniRrd 135 (185)
T 1eh1_A 108 EERRKDLVRAVRQYAEEGRVAIRNIRRE 135 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999988887663
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=23.05 E-value=60 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHH
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHY 135 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~ 135 (273)
++.+++..+.....++|....-.+|||.+|+++.--|
T Consensus 86 LVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LF 122 (156)
T 3r45_A 86 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLF 122 (156)
T ss_dssp HHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHH
Confidence 4555665555433578888888899999999876554
No 32
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=23.00 E-value=2.5e+02 Score=24.43 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh-------cC
Q psy10794 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA-------AG 194 (273)
Q Consensus 122 ~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~-------~G 194 (273)
.+++++++.. ..+...+..|.+++ ++|..+++..+|+|+=-....-. ..
T Consensus 109 ~~~~li~g~~--~Dl~~~~~~t~~dL----------------------~~Yc~~vAg~VG~l~~~l~g~~~~~~~~~~A~ 164 (293)
T 3acx_A 109 SFYNLIDTVY--KDQHFTMFETDAEL----------------------FGYCYGVAGTVGEVLTPILSDHETHQTYDVAR 164 (293)
T ss_dssp HHHHHHHHHH--HHTTCCCCSSHHHH----------------------HHHHHHHTHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHH--HHcCCCCCCCHHHH----------------------HHHHHHhhHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4455555443 35555667777776 38999999999988755442100 00
Q ss_pred CchhhHHHHHHHHHHHHHHHh
Q psy10794 195 SDSTDCINATNTVRDLYVAML 215 (273)
Q Consensus 195 ~d~~~~~~i~~fm~~ly~~f~ 215 (273)
++-.++++.+|++++-....
T Consensus 165 -~lG~AlQltNilRDv~eD~~ 184 (293)
T 3acx_A 165 -RLGESLQLINILRDVGEDFE 184 (293)
T ss_dssp -HHHHHHHHHHHHHCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHh
Confidence 23367788899999987765
No 33
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=22.78 E-value=61 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHH
Q psy10794 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHY 135 (273)
Q Consensus 99 ~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~ 135 (273)
++.+++..+.....++|+...-.+|||.+|++..--|
T Consensus 70 LVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LF 106 (140)
T 3nqu_A 70 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLF 106 (140)
T ss_dssp HHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333468888888899999999876554
No 34
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=21.67 E-value=3.7e+02 Score=22.74 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-----hhhHhhhh
Q psy10794 46 NTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVG-ED-----LYQYIRAF 119 (273)
Q Consensus 46 d~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~-~~-----~~ry~~~~ 119 (273)
+...+.||.|++.++.+.-..|..+..- ....++...-.+.+-+.+..+.+ -++.-+..+.. .| -+-=.+.+
T Consensus 40 ~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a-~~tQe~LA~aa~~~v~~i~~La~-~vK~gAAsl~s~dp~tQv~LLna~kdV 117 (199)
T 3fyq_A 40 GSFADHREHILQTAKALVEDTKVLVTGA-AGTQDQLANAAQNAVSTITQLAE-AVKRGACSLGSTQPDSQVMVINAVKDV 117 (199)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3446899999999999999888887532 11111122223334444555555 55555555533 33 23345667
Q ss_pred hhHHHHHHHHH
Q psy10794 120 SAGLQEFIEAY 130 (273)
Q Consensus 120 s~~lQEyvEA~ 130 (273)
+.++|++|-|-
T Consensus 118 a~aL~~Li~at 128 (199)
T 3fyq_A 118 ASALGDLINCT 128 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 35
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=21.25 E-value=3e+02 Score=21.50 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=44.7
Q ss_pred HHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CChHHHHHHHHHHHHHHHHHHH
Q psy10794 38 FRKYAIIMNTK-------QDKYERLVKISRDITIESKRVIFLLHTLLR----------SDTQKVLEEAESRLNILMQTHF 100 (273)
Q Consensus 38 F~~~~~~Ld~~-------~d~REriik~sRdIt~~SK~~If~LHR~~~----------~~~~~~l~~A~~~l~~i~~~~~ 100 (273)
.+.|...|... .++|..++|.++...-.+|-+|..+-|--. .-.+.....++..++.+.+..+
T Consensus 17 ~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyI 96 (121)
T 3lf9_A 17 VEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAV 96 (121)
T ss_dssp HHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHH
Confidence 34455555443 489999999999999999999988877311 1234445666667766666444
Q ss_pred HHHHH
Q psy10794 101 KSIKA 105 (273)
Q Consensus 101 ~~La~ 105 (273)
+++-.
T Consensus 97 kkID~ 101 (121)
T 3lf9_A 97 KKIDE 101 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 36
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=21.17 E-value=1.6e+02 Score=21.36 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.5
Q ss_pred HHHhhcCCchhhHHHHH----HHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHH
Q psy10794 188 IGSVAAGSDSTDCINAT----NTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKM 239 (273)
Q Consensus 188 in~v~~G~d~~~~~~i~----~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKv 239 (273)
||.+-.| |-..++++. +|=..||+.-.+=..- .+.+|+|+++||+-+.+-
T Consensus 26 In~iNGG-~~~~~EKlk~~A~~FEaaLyaksSSK~eY-mdsMr~ki~aMr~t~~~~ 79 (85)
T 2k0n_A 26 INTLNGG-SSDTADKIRIHAKNFEAALFAKSSSKKEY-MDSMNEKVAVMRNTYNTR 79 (85)
T ss_dssp HHHHHSC-STTHHHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCC-chhHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666677 877777664 4666665432211110 578999999999988763
No 37
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=20.63 E-value=1.8e+02 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=14.1
Q ss_pred HHHHHhhcCCCCCHHHHHHHH
Q psy10794 131 TFLHYLKSNHLIGWDHVEQKM 151 (273)
Q Consensus 131 sf~~~L~~~~Lit~eev~~~l 151 (273)
++..|......|+.+.+..+.
T Consensus 38 ~i~~~e~g~~~p~~~~l~~la 58 (114)
T 3op9_A 38 TVAYYMSGETKPDIEKLIRLA 58 (114)
T ss_dssp HHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHH
Confidence 555666666788888775443
No 38
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=20.57 E-value=3.7e+02 Score=22.29 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C-ChHHHHH
Q psy10794 30 ENSPVVQEFRKYAIIMN----------------TKQDKYERLVKISRDITIESKRVIFLLHTLLR------S-DTQKVLE 86 (273)
Q Consensus 30 ~~~~~~~~F~~~~~~Ld----------------~~~d~REriik~sRdIt~~SK~~If~LHR~~~------~-~~~~~l~ 86 (273)
+.+.+..+-..++.-|. --.++|..++|.++...-.+|-.|..+.|-.. . -.+....
T Consensus 74 D~~~i~~IekAI~~dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~kiseD~~k 153 (184)
T 1ge9_A 74 DQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELEGISEDEKK 153 (184)
T ss_dssp SSSHHHHHHHHHHHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 45677777777776331 12489999999999999999999988876432 1 1234455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10794 87 EAESRLNILMQTHFKSIK 104 (273)
Q Consensus 87 ~A~~~l~~i~~~~~~~La 104 (273)
.+++.++.+.++.++++-
T Consensus 154 ~~e~~iQkltd~~i~~id 171 (184)
T 1ge9_A 154 RALERLQKLTDKYIDEIN 171 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666664444443
No 39
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.02 E-value=3.4e+02 Score=21.72 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10794 40 KYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGED 111 (273)
Q Consensus 40 ~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~ 111 (273)
.|-..|.+.-+-|..+++.-++-+..=+..+ .+....+++-++++..+.. .-++|.+.++.-|
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l--------~e~e~~leeyK~Kl~rv~~-vkkeL~~hi~sLP 148 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVL--------SEKEKKLEEYKQKLARVTQ-VRKELKSHIQSLP 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCC
Confidence 3334444444444445444444333222222 2233444555555555555 4455555544443
Done!