RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10794
(273 letters)
>gnl|CDD|202084 pfam01997, Translin, Translin family. Members of this family
include Translin that interacts with DNA and forms a
ring around the DNA. This family also includes human
translin-associated protein X, which was found to
interact with translin with yeast two-hybrid screen.
Length = 187
Score = 156 bits (397), Expect = 1e-47
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 49 QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELV 108
D E L+KISRDIT SK+ IF LH + +++L+EA+ L +K L
Sbjct: 1 HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELL--------AKLKELLK 52
Query: 109 GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLT 168
G Y+Y A+S LQE++EA TF HYL++ L + + + + +T
Sbjct: 53 GHPYYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF------HVT 106
Query: 169 PTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRK 228
P +++LG+ DL+GELMRYA+ SV G D + + DLY A + +K
Sbjct: 107 PEDYLLGLFDLTGELMRYALNSVTLG-DYERPLEILEFMEDLY-AGFRLLNLKNDGLRKK 164
Query: 229 LAVLKQSLQKMERTVYTVKVRGS 251
L VL+ SL+K+E VY + VRG
Sbjct: 165 LDVLRYSLEKVEEVVYDLSVRGL 187
>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin
family [Translation, ribosomal structure and
biogenesis].
Length = 204
Score = 68.5 bits (168), Expect = 5e-14
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 47 TKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106
K E +K+SR+I S IFLLH + EEAE +L + +K
Sbjct: 14 EKDKAREEALKLSREIVRLSGEAIFLLH-------RGDFEEAEKKLKK-ASEAVEKLKRL 65
Query: 107 LVG-EDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVK 165
L G +LY + + LQE++EA LK P EE V
Sbjct: 66 LAGFPELY-FAGFVTTALQEYVEATLLYSILKDG---------------RLPSPEELGV- 108
Query: 166 LLTPTEFVLGVGDLSGELMRYAI 188
P ++LG+ D GEL R+ +
Sbjct: 109 --PPIAYILGLADAVGELRRHVL 129
>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein;
Provisional.
Length = 204
Score = 54.5 bits (132), Expect = 6e-09
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 48 KQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAEL 107
K + E +K+SR+I S I +H R D EEAE L + K +K L
Sbjct: 16 KDEAREEALKLSREIVRLSGDAIRAIH---RGD----FEEAEKLLKE-AEELVKELKELL 67
Query: 108 VGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLL 167
Y LQE++EA L N + P EE V
Sbjct: 68 KDHPELYYAGYVGTALQEYVEALLVYSLLFENKI---------------PSPEELGVP-- 110
Query: 168 TPTEFVLGVGDLSGELMRYA 187
++LG+ D GEL R+
Sbjct: 111 -EAAYLLGLADAIGELRRHI 129
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 30.7 bits (70), Expect = 0.84
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCG---PEAEESQVKLLTPTEFV 173
A+TFL IG E+ EL +A+ VK++ P + V
Sbjct: 224 AFTFLKAQ--GMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLPVDVV 269
>gnl|CDD|188535 TIGR04020, seco_metab_LLM, natural product biosynthesis
luciferase-like monooxygenase domain. This model
describes a subfamily within the bacterial
luciferase-like monooxygenase (LLM) family that
regularly occurs within large non-ribosomal protein
synthases/polyketide synthases, but also as small
proteins. The LLM family includes members that bind
either FMN or F420, and FMN is more likely in this case
because many members are from species that lack F420
biosynthesis capability. An example member is the MupA
protein of mupirocin biosynthesis in Pseudomonas
fluorescens NCIMB 10586.
Length = 341
Score = 29.9 bits (68), Expect = 1.5
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 65 ESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQ 124
S V +LHT + D +V E + +++ L + + S
Sbjct: 219 GSGHVTLMLHTFVGEDMAEVREAVRAPFCDYLRSSVDLFAGLAASLGLQIDLDSLSEDDL 278
Query: 125 EFIEAYTFLHYLKSNHLIG 143
+ + + F Y +++ L G
Sbjct: 279 DALLEHAFERYFETSGLFG 297
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor
protein 180 (AP180), clathrin assembly lymphoid myeloid
leukemia protein (CALM) and similar proteins. A set of
proteins previously designated as harboring an ENTH
domain in fact contains a highly similar, yet unique
module referred to as an AP180 N-terminal homology
(ANTH) domain. AP180 and CALM play important roles in
clathrin-mediated endocytosis. AP180 is a brain-specific
clathrin-binding protein which stimulates clathrin
assembly during the recycling of synaptic vesicles. The
ANTH domain is structurally similar to the VHS domain
and is composed of a superhelix of eight alpha helices.
ANTH domains bind both inositol phospholipids and
proteins, and contribute to the nucleation and formation
of clathrin coats on membranes. ANTH-bearing proteins
have recently been shown to function with adaptor
protein-1 and GGA adaptors at the trans-Golgi network,
which suggests that the ANTH domain is a universal
component of the machinery for clathrin-mediated
membrane budding.
Length = 117
Score = 27.2 bits (61), Expect = 4.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 72 LLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAY 130
LLH LLR L+E SR L ++F K+ +G +IRA++ L E + +
Sbjct: 60 LLHRLLREGHPSFLQELLSRRGWLNLSNFLD-KSSSLGYGYSAFIRAYARYLDERLSFH 117
>gnl|CDD|223321 COG0243, BisC, Anaerobic dehydrogenases, typically
selenocysteine-containing [Energy production and
conversion].
Length = 765
Score = 28.2 bits (63), Expect = 4.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 20/70 (28%)
Query: 111 DLYQYIR-----AFSAGL-----------QEFIEAYTFLHYLKSNHLIGWDHVEQK---- 150
DL+ IR A + G+ +EF+ YT + + + +L+G + E K
Sbjct: 249 DLWLPIRPGTDAALALGIAHVLIEENLYDEEFLAKYTNVGFDEFAYLLGLEDAEAKTPEW 308
Query: 151 MEELCGPEAE 160
E + G E
Sbjct: 309 AEAITGVAEE 318
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 28.2 bits (63), Expect = 6.0
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 6 FRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIE 65
+ K + +V G ++ LI+ S V+E +K +I+NT +R +++ + E
Sbjct: 408 EDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTV----DRAIELYEKLK-E 462
Query: 66 SKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELV 108
+ LLH+ T K EE E L L FK + +V
Sbjct: 463 KGPKVLLLHSRF---TLKDREEKERELKKL----FKQNEGFIV 498
>gnl|CDD|133855 PHA00147, PHA00147, upper collar protein.
Length = 308
Score = 27.5 bits (61), Expect = 7.2
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 17 TNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVK---ISRDITIESKRVIFL 72
T+ K L + + V E + I N +K ER+V S + IE+ +FL
Sbjct: 201 TDAPYVADK-LNAQKNAVWNEAMTFLGIKNANSEKKERMVVSEVSSNNGQIEASGEVFL 258
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 27.9 bits (62), Expect = 8.0
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 17 TNVNIGGKKNLIDEN-SPVVQEF--RKYAIIMNTKQDKYERLVKISRDITIESKRVIFLL 73
T V+ GK +LI++ P V+EF + + ++ + RLV I+RD+ S+R I L
Sbjct: 627 TGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLT 686
Query: 74 HTLLRSDTQKVL-EEAESRLNILMQTHF 100
+ D +++ E+ S+ L ++HF
Sbjct: 687 YIKAFDDLRELFAEQPRSKRLGLTKSHF 714
>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
Length = 419
Score = 27.5 bits (61), Expect = 8.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 75 TLLRSDTQKVLEE 87
T++RSDTQ+ LEE
Sbjct: 210 TVIRSDTQRELEE 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.364
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,417,119
Number of extensions: 1271899
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 31
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)