RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10794
(273 letters)
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease,
hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Length = 290
Score = 184 bits (467), Expect = 2e-57
Identities = 100/278 (35%), Positives = 156/278 (56%), Gaps = 24/278 (8%)
Query: 1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
MSN+ GFR R+ + + ++ +SPV+ F+ + ++ + DKYERLV
Sbjct: 1 MSNKEGSGGFRKRKHDNFPHNQ---RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57 KISRDITIESKRVIFLLH-TLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
K+SRDIT+ESKR IFLLH D + +L E+E +L+ + + + EL GED++Q+
Sbjct: 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV-RQKIFQVAQELSGEDMHQF 116
Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKL--------- 166
RA + GLQE++EA +F H++K+ LI D + +++ +E++
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176
Query: 167 -----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
+TP +++LGV DL+GELMR I SV G D + +R +Y G +
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235
Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIA 259
E S+KL LKQSL K+E Y +KVRGSE+P+H++A
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLA 273
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX
heterodimer, passenger RNA cleavage, RNAse, DN protein;
2.10A {Drosophila melanogaster} PDB: 3riu_C
Length = 298
Score = 171 bits (434), Expect = 3e-52
Identities = 97/287 (33%), Positives = 152/287 (52%), Gaps = 35/287 (12%)
Query: 1 MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISR 60
M G R + +DE+SP+VQ+FR Y+ + K D++ER+VK+SR
Sbjct: 1 MPKNGGAGHRNTAPRKRQI----PAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSR 56
Query: 61 DITIESKRVIFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRA 118
DITIESKR+IFLLH++ + + +KVLEEA RLN L+ +F+++ EL +D+YQ+ +
Sbjct: 57 DITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSS 116
Query: 119 FSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM--------------------------- 151
+S GLQEFI+AYT++ YL G + +
Sbjct: 117 YSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGED 176
Query: 152 -EELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL 210
+ + E+ + + PTE++LG+ DL+GELMR I S+ +G D+ C++ ++
Sbjct: 177 VQAIAQVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSG-DTDTCLDTCKALQHF 235
Query: 211 YVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHV 257
Y ++ R +E RK+ +KQS+ K E Y VKVRG E +
Sbjct: 236 YSGYISLNCQRARELWRKITTMKQSVLKAENVCYNVKVRGGEAAKWG 282
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 166 bits (420), Expect = 9e-51
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 9/230 (3%)
Query: 29 DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLE 86
N + F Y ++ +Q+ E + + R+I SK L + S
Sbjct: 15 MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACG 74
Query: 87 EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDH 146
A ++ L ++ + + Y+Y ++ Q I + YL++ L+ +
Sbjct: 75 LARKQVE-LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRET 133
Query: 147 VEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNT 206
V E+ G + +S+ L +++LG+ L+ EL R+A SV G D +N ++
Sbjct: 134 V----AEMLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERPLNISHF 188
Query: 207 VRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRH 256
+ DL + ++ LK ++K+E VY V +RG
Sbjct: 189 IGDLN-TGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKEK 237
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein,
RNA protein, DNA binding protein; 2.20A {Homo sapiens}
SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Length = 240
Score = 165 bits (419), Expect = 1e-50
Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 11/238 (4%)
Query: 22 GGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLH----TLL 77
G + + V + F + + +QD E + K+ + + ++ ++ LL
Sbjct: 3 GSHHHHHHGSMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAG 62
Query: 78 RSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLK 137
D K +A ++TH S+K + E Y++ + LQ + F+ YL+
Sbjct: 63 FQDIPKRCLKAREHFGT-VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLE 121
Query: 138 SNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDS 197
+ L+ + V E+ G E + + L +++ GV L+ EL R ++ SV AG D
Sbjct: 122 TETLVTREAV----TEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAG-DY 176
Query: 198 TDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPR 255
+ ++ + + +L + + ++ LK ++K+E VY + +RG
Sbjct: 177 SRPLHISTFINELD-SGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKET 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 8e-06
Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 65/292 (22%)
Query: 6 FRDRRRKDQSSTNVNIGGKKNLID---EN-SPVVQEFRKYAIIMNTKQDKYERLVKISRD 61
RD + +VN +I+ P E+RK ++RL
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKM----------FDRLSVFPPS 384
Query: 62 ITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
I + + + +++SD V+ + L++ K + +Y ++
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI--PSIYLELKVKLE 440
Query: 122 GLQE----FIEAYTFLHYLKSNHL------------IGWDHVEQKMEELCGPEAEESQVK 165
++ Y S+ L IG H++ E +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKN---------IEHPERM 490
Query: 166 LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL--YVAMLASGVSRVK 223
L F+ D + I + + NT++ L Y +
Sbjct: 491 TLFRMVFL----DFR--FLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYI---CDNDP 539
Query: 224 EASRKLAVLKQSLQKMERTVYTVK----VRGSEMPRHVIAHVVNESEHDCEK 271
+ R + + L K+E + K +R + M + E+ ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQVQR 589
Score = 39.5 bits (91), Expect = 0.001
Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 54/234 (23%)
Query: 35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNI 94
VQ+ K + +K++ + ++ ++ + L TLL + V + E L
Sbjct: 38 VQDMPKSIL---SKEE-IDHIIMSKDAVS----GTLRLFWTLLSKQEEMVQKFVEEVL-- 87
Query: 95 LMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHV--EQKME 152
+ ++K + + + E R S + +IE L+ N + +V Q
Sbjct: 88 --RINYKFLMSPIKTEQ-----RQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYL 138
Query: 153 ELCGPEAEESQVKL--LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL 210
+L + L L P + VL + G + GS T + A +
Sbjct: 139 KL--------RQALLELRPAKNVL----IDG--V--------LGSGKT-WV-ALDVCLSY 174
Query: 211 YV-AMLASGVS--RVKEASRKLAVLKQSLQKMERTV---YTVKVRGSEMPRHVI 258
V + + +K + VL+ LQK+ + +T + S + I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRI 227
Score = 38.3 bits (88), Expect = 0.003
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 3 NRGFRDRR-RKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRD 61
+ F +++ R D ++ N + G N + Q+ + Y + KYERLV D
Sbjct: 499 DFRFLEQKIRHDSTAWNAS-GSILNTL-------QQLKFYKPYICDNDPKYERLVNAILD 550
Query: 62 --ITIESKRVIF----LLHTLLRSDTQKVLEEAESRL 92
IE + LL L ++ + + EEA ++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 37.9 bits (87), Expect = 0.003
Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 55/212 (25%)
Query: 11 RKDQSSTNVNI----G-GKKNLIDE--NSPVVQEFRKYAII-MNTKQDKYERLVKISRDI 62
+ + + NV I G GK + + S VQ + I +N K V +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----L 199
Query: 63 TIESKRVIFLLHTLLRSDTQKV---------LEEAESRLNILMQTH-FKSIKAELVGEDL 112
+ K LL+ + + T + + ++ L L+++ ++ LV ++
Sbjct: 200 EMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVLLNV 253
Query: 113 Y--QYIRAF-----------SAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEEL----- 154
+ AF + +F+ A T H +H + E ++ L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYL 311
Query: 155 -CGPEAEESQVKLLTPTEFVLGVGDLSGELMR 185
C P+ +V P L + E +R
Sbjct: 312 DCRPQDLPREVLTTNP--RRLS---IIAESIR 338
Score = 35.6 bits (81), Expect = 0.018
Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 33/173 (19%)
Query: 99 HFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLH---YLKS-------NHLIGWDHVE 148
H + E GE YQY S F++ + KS +H+I
Sbjct: 3 HHHHMDFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 149 QKMEEL--CGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAG-SDST----DCI 201
L +E V+ +FV V ++ + + I + S T +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQ-----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 202 NATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP 254
+ ++ VSR++ L+Q+L ++ V + G +
Sbjct: 117 DRLYNDNQVFAKY---NVSRLQ----PYLKLRQALLELRPAKN-VLIDG--VL 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 92/291 (31%)
Query: 1 MSNRGFR--DRRRKDQSSTNVNIGGKK-NLIDENSPVVQEFRKY-AIIMNTKQDKYERLV 56
GF D + + ++ GG+K I EN Y A+I T D +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---------YSAMIFETIVDGKLKTE 1704
Query: 57 KISRDITIESKRVIF------LLHTLLRSDTQ-----------KVLEEAESRLNILMQT- 98
KI ++I S F L T TQ + L+ L+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALTLMEKAAFEDLKSKG-----LIPAD 1756
Query: 99 -----HFKSIKAELVGEDLYQYIRAFSA-----GLQEFIEAYTFLHY--LKSNHLIGWDH 146
H S +GE ++A + + Y + + D
Sbjct: 1757 ATFAGH--S-----LGE--------YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 147 VEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCI---NA 203
+ + + + P E ++Y + V + I N
Sbjct: 1802 LGRSNYGMIA----------INPGRVAASFSQ---EALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 204 TNTVRDLYVAMLASG-VSRVKEASRKLAVLK-QS--LQKMERTVYTVKVRG 250
N YV A+G + + + L +K Q + ++++++ +V G
Sbjct: 1849 ENQQ---YV---AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 42.7 bits (100), Expect = 9e-05
Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 57/217 (26%)
Query: 73 LHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIR--------------A 118
L+ +++ + L+ L++T + K G ++ +++
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 119 FSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVG- 177
S L I HY+ + L+G+ E + L G G
Sbjct: 236 ISCPL---IGVIQLAHYVVTAKLLGFTPGELR-SYLKG----------------ATGHSQ 275
Query: 178 DLSGELMRYAIGSVA-AGSDSTDCINATNTVRDLYVAMLASGVSRVKEA----SRKLAVL 232
L + +VA A +DS + + +VR + GV R EA S ++L
Sbjct: 276 GL--------VTAVAIAETDSWE--SFFVSVRKAITVLFFIGV-RCYEAYPNTSLPPSIL 324
Query: 233 KQSLQKMERT-VYTVKVRGSEMPR-HVIAHV--VNES 265
+ SL+ E + + + + V +V N
Sbjct: 325 EDSLENNEGVPSPMLSISN--LTQEQVQDYVNKTNSH 359
Score = 40.4 bits (94), Expect = 6e-04
Identities = 42/222 (18%), Positives = 62/222 (27%), Gaps = 113/222 (50%)
Query: 82 QKVLEEAE---------SRLNIL------MQTHFKSIKAELVGEDLYQYIRAFSAGLQEF 126
Q V A+ S L+I+ + HF K + IR
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG--------KRIR--------- 1685
Query: 127 IEAYTFLHY-------LKSNHLIGWDHVEQKMEELC--GPEAEESQVKLLTPTEF----V 173
E Y+ + + LK+ + + + + LL+ T+F +
Sbjct: 1686 -ENYSAMIFETIVDGKLKTEKIF--KEINEHSTSYTFRSEKG------LLSATQFTQPAL 1736
Query: 174 LGVGDLSGELMRYAI------------GSVAAG-SDSTDCINATNTVRDL--YVAMLASG 218
LM A + AG S L Y A LAS
Sbjct: 1737 T--------LMEKAAFEDLKSKGLIPADATFAGHS--------------LGEYAA-LAS- 1772
Query: 219 VSRVKEASRKLA-VLKQSLQKMERTVYTVKVRG----SEMPR 255
LA V+ S+ E V V RG +PR
Sbjct: 1773 ----------LADVM--SI---ESLVEVVFYRGMTMQVAVPR 1799
Score = 32.7 bits (74), Expect = 0.14
Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 72/232 (31%)
Query: 59 SRDITIE--SKRVIFL----LH---TLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVG 109
+R +T+ S + L + L+ K+L E + + AELVG
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP---TTPAELVG 62
Query: 110 ------------EDLYQYIRAFSAGLQEFIEAYTFL-----HYLKSNHLIGWDHVEQKME 152
+ Q+ + + L EF E +L H L + L D K +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEF-EN-CYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 153 ELC-----------GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAI-GSVAAG-SDSTD 199
EL P ++S L G AI G G ++ D
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVG--------EGNAQLVAIFG----GQGNTDD 168
Query: 200 CINATNTVRDLY------VAMLASGVSRVKEASRKLAVLKQSLQKMERTVYT 245
+RDLY V L +K ++ L+ L ++ E+ V+T
Sbjct: 169 YF---EELRDLYQTYHVLVGDL------IKFSAETLSELIRTTLDAEK-VFT 210
Score = 31.2 bits (70), Expect = 0.39
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 163 QVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL---YVAMLASGV 219
+ LL PT L + + + ++ + T +L ++ ++S V
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNK----ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 220 SRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRH-VIAHVVNESE 266
+ + VL L + E + G+++ H + A ++ E++
Sbjct: 73 EP-SKVGQFDQVLNLCLTEFENCY----LEGNDI--HALAAKLLQEND 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.015
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 17/45 (37%)
Query: 160 EESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINAT 204
E+ +K L L YA S A + I AT
Sbjct: 18 EKQALK------------KLQASLKLYADDSAPALA-----IKAT 45
Score = 32.2 bits (72), Expect = 0.087
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 233 KQSLQKMERTV--YTVKVRGSEMPRHVIAHVVNES-E 266
KQ+L+K++ ++ Y A + + E
Sbjct: 19 KQALKKLQASLKLYA--------DDSAPALAIKATME 47
>1p9h_A Invasin; collagen-binding, LEFT-handed beta-roll, cell adhesion;
1.55A {Yersinia enterocolitica} SCOP: b.81.3.1
Length = 226
Score = 32.1 bits (73), Expect = 0.12
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 188 IGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAV 231
+ +AAG+ TD +N VA L + + +E + K +
Sbjct: 181 LTHLAAGTKDTDAVN---------VAQLKKEIEKTQENTNKRSA 215
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 30.6 bits (68), Expect = 0.45
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 72 LLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYT 131
H L+ ++ ++ S + + F K + + + FI Y
Sbjct: 83 TTHHLMAYGNERFMQYLASSNSTFNLSSFLD-KGTVQDGGMGVPGGRMGYDMSPFIRRYA 141
Query: 132 FL--HYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLL 167
S + +D + K + G + KLL
Sbjct: 142 KYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLL 179
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 30.0 bits (68), Expect = 0.65
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 24/124 (19%)
Query: 27 LIDENSP-------VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRS 79
L + + Y + T D+YE+L ++
Sbjct: 13 LNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKL----------TREAFSNYAGKPYR 62
Query: 80 DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSN 139
+ +LEE +L + + +R + + E L LK
Sbjct: 63 PLRDILEEVMRKL-------AEKYGFKYPENFWEISLRMSQRYGELYPEVVEVLKSLKGK 115
Query: 140 HLIG 143
+ +G
Sbjct: 116 YHVG 119
>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor;
HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A
Length = 115
Score = 27.7 bits (61), Expect = 1.9
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 21 IGGKKNLIDENSPVVQEFRKYAIIMNTKQ----DKYERLVKISR 60
GG + +++ P E YA + Q ++ +V++ +
Sbjct: 6 RGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMK 49
>3s6l_A HEP_HAG family; structural genomics, seattle structural genomics
center for infectious disease, ssgcid; 2.30A
{Burkholderia pseudomallei}
Length = 178
Score = 28.4 bits (64), Expect = 2.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 188 IGSVAAGSDSTDCIN 202
+ +VA G D TD N
Sbjct: 147 LTNVAPGIDGTDAAN 161
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 28.3 bits (64), Expect = 2.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCG---PEAEESQVKLLTPTEFVLG 175
A+TFL L N IG +++ ++ +AE++ VK+ P +FV
Sbjct: 240 AFTFLKVLN-NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTA 288
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 28.6 bits (64), Expect = 2.7
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 105 AELVGEDLYQYIRAFSAGLQEFIEAYT--FLHYLKSNHLIGWDH-VEQKMEELCGPEAEE 161
AEL+ +D RA + + + + G D + L P
Sbjct: 97 AELLQDDPNGISRALNLPV-PVVPLELPSY----SRKENYGADETFRALVRALAVPMERT 151
Query: 162 SQVKLLTPTEFVLG---VGDLSG-----ELMRYAIGSVAAGSDSTDCI----NATNTV 207
+V LG D++ M + A S D + A V
Sbjct: 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRKLGQAHFNV 209
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 27.6 bits (62), Expect = 3.4
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 102 SIKAELVGEDLYQYIRAFSAG---LQEFIEAYTFLHYLKSNHLIG 143
SI L+ +LYQY+ S L + T +
Sbjct: 5 SINTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTA 49
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 27.7 bits (62), Expect = 4.1
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 69 VIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIE 128
V+ L S+ K + E LN+++ E V E +Y+ R ++ Q
Sbjct: 94 VVDLKA-FFYSNGDK---KDEVFLNLVL---------EYVPETVYRASRHYAKLKQTMPM 140
Query: 129 AY 130
Sbjct: 141 LL 142
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold,
cystatin/monellin superfamily, phytocystatin family;
NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Length = 102
Score = 26.4 bits (58), Expect = 4.4
Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 21 IGGKKNLIDENSPVVQEFRKYAIIMNTKQD----KYERLVK 57
+GG + + +EN + + ++A+ + K+ ++E+LV
Sbjct: 9 LGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVS 49
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 27.5 bits (62), Expect = 4.9
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCGP---EAEESQVKLLTPTEFVLG 175
AYTF L N IG ++ ++ G +A+ V++ P +F +
Sbjct: 242 AYTFKKVLN-NMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIA 290
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 27.5 bits (62), Expect = 5.1
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCG---PEAEESQVKLLTPTEFVLG 175
A+TF L+ N IG ++ E+ +A+ V+++ P +F++
Sbjct: 168 AFTFKKVLE-NTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIA 216
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 27.0 bits (60), Expect = 6.4
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 18/61 (29%)
Query: 87 EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQ----EFIEAYTF-----LHYLK 137
LN++M E V + L++ +++F + I Y + + ++
Sbjct: 108 SQNKYLNVIM---------EYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158
Query: 138 S 138
S
Sbjct: 159 S 159
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 27.1 bits (61), Expect = 6.5
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCGP---EAEESQVKLLTPTEFVLG 175
A+TF L+ N IG ++ E+ +A+ V+++ P +F++
Sbjct: 238 AFTFKKVLE-NTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIA 286
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 27.4 bits (61), Expect = 6.6
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 69 VIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIE 128
++ L + S +K + E LN+++ + V E +Y+ R +S Q
Sbjct: 109 IVRLRY-FFYSSGEK---KDEVYLNLVL---------DYVPETVYRVARHYSRAKQTLPV 155
Query: 129 AY 130
Y
Sbjct: 156 IY 157
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.0 bits (60), Expect = 7.2
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 105 AELVGEDLYQYIRAFSAGLQEFIEAYTFL----HYLKSNHLIGWDH-VEQKMEELCGPEA 159
AE++G+DL +I E + +H+ GWD+ E
Sbjct: 155 AEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSF-VGSHVTGWDNMFEGIARYFTLKSM 213
Query: 160 EESQVKL 166
++ V
Sbjct: 214 DDKVVGS 220
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 27.1 bits (61), Expect = 7.3
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 129 AYTFLHYLKSNHLIGWDHVEQKMEELCGP---EAEESQVKLLTPTEFVLG 175
+TFL L +G VE+ +L +A+E V+++ P + V+
Sbjct: 221 MFTFLKAL--GKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIA 268
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 26.6 bits (59), Expect = 7.5
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 89 ESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIG 143
+R + L++ + L+ + Y R G Q A+ + L+ +
Sbjct: 71 NTRFSALLKEYGYEADGALLEQK---YRRFLEEGHQLIDGAFDLISNLQQQFDLY 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.364
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,917,050
Number of extensions: 227019
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 49
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)