RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10794
(273 letters)
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
9606]}
Length = 217
Score = 157 bits (399), Expect = 3e-48
Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)
Query: 34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRS----DTQKVLEEAE 89
V + F + + +QD E + K+ + + ++ ++ LL + + D K +A
Sbjct: 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62
Query: 90 SRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQ 149
++TH S+K + E Y++ + LQ + F+ YL++ L+ + V +
Sbjct: 63 EHFGT-VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121
Query: 150 KMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRD 209
+ G E + + L +++ GV L+ EL R ++ SV AG D + ++ + + +
Sbjct: 122 IL----GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAG-DYSRPLHISTFINE 176
Query: 210 LYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRG 250
L + + ++ LK ++K+E VY + +RG
Sbjct: 177 LD-SGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216
>d1p9ha_ b.81.3.1 (A:) Adhesin YadA, collagen-binding domain
{Yersinia enterocolitica [TaxId: 630]}
Length = 189
Score = 30.2 bits (67), Expect = 0.18
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 188 IGSVAAGSDSTDCINATNTVRDLYVAM 214
+ +AAG+ TD +N V L +
Sbjct: 165 LTHLAAGTKDTDAVN----VAQLKKEI 187
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 144
Score = 28.8 bits (64), Expect = 0.38
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 17 TNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL 76
+N G +L+ E + + ++ IM+ ++RL ++ K + + + +
Sbjct: 15 SNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI---WKRLNDHGKNWRHVYKAMTLMEYLI 71
Query: 77 LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFL 133
+ + E+ + F+ + + G+D +R + L + L
Sbjct: 72 KTGSERVSQQCKENMYAVQTLKDFQYVDRD--GKDQGVNVREKAKQLVALLRDEDRL 126
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 28.0 bits (62), Expect = 0.68
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 68 RVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFK----------SIKAELVGEDLYQYIR 117
+ + H L+ ++ ++ S + + F + +G D+ +IR
Sbjct: 58 KSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIR 117
Query: 118 AFSAGLQEFIEAY 130
++ L E +Y
Sbjct: 118 RYAKYLNEKSLSY 130
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 28.5 bits (63), Expect = 0.85
Identities = 10/70 (14%), Positives = 24/70 (34%)
Query: 105 AELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQV 164
L+G+D+ + A L + I + + +G + + + +E
Sbjct: 153 IGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTT 212
Query: 165 KLLTPTEFVL 174
TP + +
Sbjct: 213 FASTPYDVAI 222
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 27.4 bits (60), Expect = 2.2
Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 105 AELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEES-- 162
L+G+D+ S + + A++ Y + G + + +
Sbjct: 146 VGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQK 205
Query: 163 --QVKLLTPTEFVLGVGDLSG--ELMRYAIGSVAAGSDSTDCI 201
+ +L ++ E + Y + + G + + +
Sbjct: 206 KYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKV 248
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 26.6 bits (59), Expect = 2.8
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 127 IEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRY 186
+ Y I L + ++T E +LG+GDL M
Sbjct: 98 CQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGI 157
Query: 187 AIGSVA-----AGSDSTDCI 201
+G +A G C+
Sbjct: 158 PVGKLALYTACGGVKPHQCL 177
>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza
sativa), subsp. japonica, oryzacystatin-I [TaxId:
4530]}
Length = 102
Score = 25.6 bits (56), Expect = 3.3
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 22 GGKKNLIDENSPVVQEFRKYAII-MNTKQDKYERLVKI 58
GG + + +EN + + ++A+ N K + K+
Sbjct: 10 GGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKL 47
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 81
Score = 25.2 bits (55), Expect = 3.5
Identities = 2/23 (8%), Positives = 13/23 (56%)
Query: 220 SRVKEASRKLAVLKQSLQKMERT 242
++++ K+ +++ L++ +
Sbjct: 50 QMLQDSKTKIDIIRMQLRRALQA 72
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 26.2 bits (57), Expect = 3.9
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 179 LSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLAS---------GVSRVKEASRKL 229
LSGEL++ A + G T N + ++ G + E + +L
Sbjct: 86 LSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRL 145
Query: 230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESEHDCEK 271
A S+ E+ + E+ +A +
Sbjct: 146 AKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLI 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.364
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 920,117
Number of extensions: 40209
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 17
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)