BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10795
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I K V ID+ + V+ +DG+ Y+A K+++TVPL +L+ I F P L +K+ A
Sbjct: 566 IQLKSPVQCIDYS-GDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKA 624
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFY 211
I L G ++KI ++FP ++W QG +F+ HV G+ +
Sbjct: 625 INSLGAGIIEKIALQFPYRFWDSKVQGADFFG-------------HVPPSASKRGLFAVF 671
Query: 212 MDAEDPL----TLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRS 267
D DP L+ IAG + TL + M R +P+P + +
Sbjct: 672 YDM-DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQE-VPDPTKYFVT 729
Query: 268 AWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTS 327
WS +P + +YS + T
Sbjct: 730 RWSTDPWIQMAYSF------------------------------------------VKTG 747
Query: 328 AADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVY 376
+ A +I + + + FAGEAT+ H TV GA SG RE + +
Sbjct: 748 GSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 796
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I K V ID+ + V+ +DG+ Y+A K+++TVPL +L+ I F P L +K+ A
Sbjct: 554 IQLKSPVQCIDYS-GDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKA 612
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFY 211
I L G ++KI ++FP ++W QG +F+ HV G+ +
Sbjct: 613 INSLGAGIIEKIALQFPYRFWDSKVQGADFFG-------------HVPPSASKRGLFAVF 659
Query: 212 MDAEDPL----TLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRS 267
D DP L+ IAG + TL + M R +P+P + +
Sbjct: 660 YDM-DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQE-VPDPTKYFVT 717
Query: 268 AWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTS 327
WS +P + +YS + T
Sbjct: 718 RWSTDPWIQMAYSF------------------------------------------VKTG 735
Query: 328 AADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVY 376
+ A +I + + + FAGEAT+ H TV GA SG RE + +
Sbjct: 736 GSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 784
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I K V ID+ + V+ +DG+ Y+A K+++TVPL +L+ I F P L +K+ A
Sbjct: 546 IQLKSPVQCIDYS-GDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKA 604
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFY 211
I L G ++KI ++FP ++W QG +F+ HV G+ +
Sbjct: 605 INSLGAGIIEKIALQFPYRFWDSKVQGADFFG-------------HVPPSASKRGLFAVF 651
Query: 212 MDAEDPL----TLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRS 267
D DP L+ IAG + TL + M R +P+P + +
Sbjct: 652 YDM-DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQE-VPDPTKYFVT 709
Query: 268 AWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTS 327
WS +P + +YS + T
Sbjct: 710 RWSTDPWIQMAYSF------------------------------------------VKTG 727
Query: 328 AADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVY 376
+ A +I + + + FAGEAT+ H TV GA SG RE + +
Sbjct: 728 GSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 776
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 61/284 (21%)
Query: 87 DLSNKILYKK-EVNKIDWEYQ---NGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVP 142
D S KI+ + ++NK+ E + G V D SVY+A ++++ LGVL+S LI F P
Sbjct: 221 DKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKP 202
LP K+ AI + KIF++FP K+W +G +G F+ + +
Sbjct: 281 KLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEG-KGREFFLYASSRRGYYG--------- 330
Query: 203 WVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPI 262
VW F D LL + +R +E +A+IM++ R G +P+
Sbjct: 331 -VWQ--EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK-DVPDAT 386
Query: 263 RIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSD 322
I+ W + ++G++S+ P+ Y+ LR
Sbjct: 387 DILVPRWWSDRFYKGTFSNW-----------------------PVGVNRYEYDQLR---- 419
Query: 323 RLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG 366
APV GR + F GE TS H+ G V+GA SG
Sbjct: 420 ----------APV----GR--VYFTGEHTSEHYNGYVHGAYLSG 447
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 61/284 (21%)
Query: 87 DLSNKILYKK-EVNKIDWEYQ---NGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVP 142
D S KI+ + ++NK+ E + G V D SVY+A ++++ LGVL+S LI F P
Sbjct: 221 DKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKP 202
LP K+ AI + IF++FP K+W +G +G F+ + +
Sbjct: 281 KLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEG-KGREFFLYASSRRGYYG--------- 330
Query: 203 WVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPI 262
VW F D LL + +R +E +A+IM++ R G +P+
Sbjct: 331 -VWQ--EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK-DVPDAT 386
Query: 263 RIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSD 322
I+ W + ++G++S+ P+ Y+ LR
Sbjct: 387 DILVPRWWSDRFYKGTFSNW-----------------------PVGVNRYEYDQLR---- 419
Query: 323 RLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG 366
APV GR + F GE TS H+ G V+GA SG
Sbjct: 420 ----------APV----GR--VYFTGEHTSEHYNGYVHGAYLSG 447
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 438 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 497
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 498 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 541
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 542 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 600
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 601 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 628
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 629 GEHTIRNYPATVHGALLSGLRE 650
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 438 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 497
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 498 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 541
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 542 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 600
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 601 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 628
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 629 GEHTIRNYPATVHGALLSGLRE 650
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 53/263 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 438 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 497
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 498 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 541
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 542 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 600
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 601 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 628
Query: 348 GEATSPHHYGTVNGAVESGARET 370
GE T ++ TV+GA+ SG RE
Sbjct: 629 GEHTIRNYPATVHGALLSGLREA 651
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 438 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 497
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 498 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 541
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 542 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 600
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 601 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 628
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 629 GEHTIRNYPATVHGALLSGLRE 650
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 439 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 498
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 499 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 542
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 543 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 601
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 602 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 629
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 630 GEHTIRNYPATVHGALLSGLRE 651
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 487 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 546
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 547 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 590
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 591 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 649
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 650 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 677
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 678 GEHTIRNYPATVHGALLSGLRE 699
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 491 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 550
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 551 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 594
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSH--HGPTQH 287
ME + V+ + + + G + +P+P V S W +P RGSYS+ G + +
Sbjct: 595 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN 653
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFA 347
+ + P AP QP P L FA
Sbjct: 654 DYDLMAQPITPGPSIPGAP------QPI--------------------------PRLFFA 681
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 682 GEHTIRNYPATVHGALLSGLRE 703
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 53/262 (20%)
Query: 112 SCSDGSVYTAYKIIITVPLGVLKSK--LITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169
S S +Y ++ T+PLGVLK + + FVP LP K +A++ + FG ++K+ + F
Sbjct: 609 STSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 668
Query: 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229
+W F HV G L + + LL +AG A
Sbjct: 669 VFWDPSVNLFG----------------HVGSTTASRGELFLFWNLYKAPILLALVAGEAA 712
Query: 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQC 289
ME + V+ + + + G + +P+P V S W +P RGSYS+
Sbjct: 713 GIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVA------ 765
Query: 290 RRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPV--LLFA 347
+ +G+D + P I +P+ L FA
Sbjct: 766 --------------------------AGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 799
Query: 348 GEATSPHHYGTVNGAVESGARE 369
GE T ++ TV+GA+ SG RE
Sbjct: 800 GEHTIRNYPATVHGALLSGLRE 821
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 97 EVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------ITFVPSLPAQ 147
EV I E V+C DG+VY A +IITVP VL + I F P L
Sbjct: 222 EVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPV 281
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+A + ++FG + K+ F W +
Sbjct: 282 IQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 97 EVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------ITFVPSLPAQ 147
EV I E V+C DG+VY A +IITVP VL + I F P L
Sbjct: 222 EVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPV 281
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+A + ++FG + K+ F W +
Sbjct: 282 IQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 97 EVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------ITFVPSLPAQ 147
EV I E V+C DG+VY A +IITVP VL + I F P L
Sbjct: 222 EVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPV 281
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+A + ++FG + K+ F W +
Sbjct: 282 IQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 97 EVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------ITFVPSLPAQ 147
EV I E V+C DG+VY A +IITVP VL + I F P L
Sbjct: 222 EVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPV 281
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+A + ++FG + K+ F W +
Sbjct: 282 IQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 97 EVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------ITFVPSLPAQ 147
EV I E V+C DG+VY A +IITVP VL + I F P L
Sbjct: 222 EVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPV 281
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+A + ++FG + K+ F W +
Sbjct: 282 IQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 42/231 (18%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSV-YTAYKIIITVPLGVLKSKLITFVPSLPA 146
L + + V + W ++GA V +DG + A ++I+ VP + I++ P LP
Sbjct: 225 LGDDVFLNAPVRTVKWN-ESGATV-LADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWK-DGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
++ + + G V K+ + +W+ DG G F ++ +++ + H D
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEV-VQEVYDNTNHED------ 333
Query: 206 GILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIV 265
D TL+ +++ A M L +A I+ +LG EP+
Sbjct: 334 ----------DRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYY 381
Query: 266 RSAWSINPHFRGSYSHH-----------------GPTQHQCRRLGRSSYQQ 299
S W RG+Y+ GP C + YQ
Sbjct: 382 ESDWGSEEWTRGAYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQH 432
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 42/231 (18%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSV-YTAYKIIITVPLGVLKSKLITFVPSLPA 146
L + + V + W ++GA V +DG + A ++I+ VP + I++ P LP
Sbjct: 225 LGDDVFLNAPVRTVKWN-ESGATV-LADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWK-DGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
++ + + G V K+ + +W+ DG G F ++ +++ + H D
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEV-VQEVYDNTNHED------ 333
Query: 206 GILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIV 265
D TL+ +++ A M L +A I+ +LG EP+
Sbjct: 334 ----------DRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYY 381
Query: 266 RSAWSINPHFRGSYSHH-----------------GPTQHQCRRLGRSSYQQ 299
S W RG Y+ GP C + YQ
Sbjct: 382 ESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQH 432
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 42/231 (18%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSV-YTAYKIIITVPLGVLKSKLITFVPSLPA 146
L + + V + W ++GA V +DG + A ++I+ VP + I++ P LP
Sbjct: 225 LGDDVFLNAPVRTVKWN-ESGATV-LADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWK-DGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
++ + + G V K+ + +W+ DG G F ++ +++ + H D
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEV-VQEVYDNTNHED------ 333
Query: 206 GILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIV 265
D TL+ +++ A M L +A I+ +LG EP+
Sbjct: 334 ----------DRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYY 381
Query: 266 RSAWSINPHFRGSYSHH-----------------GPTQHQCRRLGRSSYQQ 299
S W RG Y+ GP C + YQ
Sbjct: 382 ESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQH 432
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 75 PLTLLVSGQTPVDLSNKIL-YKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVL 133
P ++ + Q V L+ +++ +++V ++ YQ + S V Y I+ T
Sbjct: 257 PTSMYQAIQEKVHLNARVIKIQQDVKEVTVTYQTSEKETLS---VTADYVIVCTTSRA-- 311
Query: 134 KSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKD 174
++ I F P LP +K +A+ +++ + KIF+ K+W+D
Sbjct: 312 -ARRIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWED 351
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 25/195 (12%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSV-YTAYKIIITVPLGVLKSKLITFVPSLPA 146
L + + V + W ++GA V +DG + A ++I+ VP + I++ P LP
Sbjct: 225 LGDDVFLNAPVRTVKWN-ESGATV-LADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWK-DGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
++ + + G V K+ + +W+ DG G F ++ +++ + H D
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEV-VQEVYDNTNHED------ 333
Query: 206 GILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIV 265
D TL+ +++ A M L +A I+ +LG EP+
Sbjct: 334 ----------DRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYY 381
Query: 266 RSAWSINPHFRGSYS 280
S W RG Y+
Sbjct: 382 ESDWGSEEWTRGCYT 396
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 87 DLSNKILYKKEVNKIDWEYQNGAAV----SCSDGSVYTAYKIIITVPLGVLKSKLITFVP 142
D+ +K+ + +V KI Q V S SV Y I+ T V +LI F P
Sbjct: 250 DIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV---RLIKFNP 306
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKD 174
L +K +A+ +++ + KIF+ K+W+D
Sbjct: 307 PLLPKKAHALRSVHYRSGTKIFLTCTTKFWED 338
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 106 QNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFI 165
++ A V+ DG + A +++ T+PL VL + I F P+L ++++A++ + K+
Sbjct: 286 RDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHA 343
Query: 166 RFPAK 170
K
Sbjct: 344 EVDNK 348
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 106 QNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFI 165
++ A V+ DG + A +++ T+PL VL + I F P+L ++++A++ + K+
Sbjct: 286 RDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHA 343
Query: 166 RFPAK 170
K
Sbjct: 344 EVDNK 348
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 106 QNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKI 163
++ A V+ DG + A +++ T+PL VL + I F P+L ++++A++ + K+
Sbjct: 286 RDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKV 341
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 75 PLTLLVSGQTPVDLSNKIL-YKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVL 133
P ++ + + V L+ +++ +K K+ YQ A SV Y I+ T
Sbjct: 244 PTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAK---EMASVTADYVIVCTTSRA-- 298
Query: 134 KSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKD 174
++ I F P LP +K +A+ +++ + KIF+ K+W+D
Sbjct: 299 -TRRIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWED 338
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 48 DLFKDMVHVDGKPWVWGILGFYMDA----EDPLTLLVSG--QTPVDL----SNKILYKKE 97
D+ D+++ D +V I D E +V G Q P + K+ +
Sbjct: 201 DMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVGGMDQLPTSMYRAIEEKVKFNAR 260
Query: 98 VNKIDWEYQNGAAVSCS------DGSVYTA-YKIIITVPLGVLKSKLITFVPSLPAQKLN 150
V KI QN V+ + D S TA Y I+ T ++ I F P LP +K +
Sbjct: 261 VIKIQ---QNANQVTVTYQTPEKDTSSNTADYVIVCTTSRA---ARRIQFEPPLPPKKQH 314
Query: 151 AIEGLNFGTVDKIFIRFPAKWWKD 174
A+ +++ + KIF+ +K+W+D
Sbjct: 315 ALRSVHYRSGTKIFLTCSSKFWED 338
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGLMEGAVEAGERAAREILHAM 454
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGHMEGAVEAGERAAREILHAM 454
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 224 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 278
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 279 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 320
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 321 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 379
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 380 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 413
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 414 RQPVDR--------------------IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 453
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGFMEGAVEAGERAAREILHAM 454
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 105/300 (35%), Gaps = 67/300 (22%)
Query: 80 VSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLIT 139
VS Q L +K+ V ID + + V + Y +I +P +L +K I
Sbjct: 234 VSEQIMGLLGDKVKLSSPVTYID-QTDDNIIVETLNHEHYECKYVISAIP-PILTAK-IH 290
Query: 140 FVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW--KDGCQGFNFYWTQQDKMDLFKDMVH 197
F P LP ++ I+ L G V K + + +W KD C G ++ + + D
Sbjct: 291 FKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYC-GCMIIEDEEAPIAITLD--- 346
Query: 198 VDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYI 257
D KP D P ++G+I A + L + + I L+ LG
Sbjct: 347 -DTKP----------DGSLP-AIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEA 394
Query: 258 IPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ P+ W + G Y+ + P Q R R P+ R
Sbjct: 395 L-YPVHYEEKNWCEEQYSGGCYTAYFPPGIMT--------QYGRVIRQPVGR-------- 437
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
+ FAG T+ G + GAVE+G ARE NA+
Sbjct: 438 --------------------------IYFAGTETATQWSGYMEGAVEAGERAAREVLNAL 471
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 111 VSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAK 170
V+ DG + A+ +I+ P+ + I F P+LP ++ + IE + G KI I
Sbjct: 238 VTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGA 295
Query: 171 WWKDGCQGFNFYWTQQDKMDL 191
C G + T D ++
Sbjct: 296 EAGIECVGDGIFPTLYDYCEV 316
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 83/300 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 321
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ + +D P ++G+I AR + L + L+ LG + EP
Sbjct: 322 APVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 380
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 381 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 414
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETANAI 374
R DR + FAG T+ H G + GAVE+G ARE +A+
Sbjct: 415 RQPVDR--------------------IYFAGTETATHWSGWMEGAVEAGERAAREILHAM 454
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 111 VSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAK 170
V+ DG + A+ +I+ P+ + I F P+LP ++ + IE + G KI I
Sbjct: 238 VTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGA 295
Query: 171 WWKDGCQGFNFYWTQQDKMDL 191
C G + T D ++
Sbjct: 296 EAGIECVGDGIFPTLYDYCEV 316
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 102/291 (35%), Gaps = 80/291 (27%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP--LGVLKSKLITFVPSLP 145
L +++ ++ V ID +N V + +Y A +I +P LG+ I F P LP
Sbjct: 224 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 278
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVW 205
+ I + G+V K + + +W+ K D M+ +DG+
Sbjct: 279 MMRNQMITRVPLGSVIKCIVYYKEPFWR--------------KKDYCGTMI-IDGEE--- 320
Query: 206 GILGFYMDAEDP----LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEP 261
+ +D P ++G+I AR + L + L+ LG + EP
Sbjct: 321 APVAATLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EP 379
Query: 262 IRIVRSAWSINPHFRGSYSHHGP----TQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+ W + G Y+ + P TQ+ GR L
Sbjct: 380 VHYEEKNWCEEQYSGGCYTTYFPPGILTQY-----GR---------------------VL 413
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGAR 368
R DR + FAG T+ H G + GAVE+G R
Sbjct: 414 RQPVDR--------------------IYFAGTETATHWSGYMEGAVEAGER 444
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 81/242 (33%), Gaps = 64/242 (26%)
Query: 138 ITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW--KDGCQGFNFYWTQQDKMDLFKDM 195
I F P LPA++ I+ L G V K + + +W KD C G + + + D
Sbjct: 270 IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYC-GCMIIEDEDAPISITLD- 327
Query: 196 VHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGA 255
D KP D P ++G+I A + L + + I L+ LG
Sbjct: 328 ---DTKP----------DGSLP-AIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQ 373
Query: 256 YIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPT 315
+ P+ W + G Y+ + P Q R R P+ R
Sbjct: 374 EAL-HPVHYEEKNWCEEQYSGGCYTAYFPPGIMT--------QYGRVIRQPVGR------ 418
Query: 316 SLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETAN 372
+ FAG T+ G + GAVE+G ARE N
Sbjct: 419 ----------------------------IFFAGTETATKWSGYMEGAVEAGERAAREVLN 450
Query: 373 AI 374
+
Sbjct: 451 GL 452
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 81/242 (33%), Gaps = 64/242 (26%)
Query: 138 ITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW--KDGCQGFNFYWTQQDKMDLFKDM 195
I F P LPA++ I+ L G V K + + +W KD C G + + + D
Sbjct: 270 IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYC-GCMIIEDEDAPISITLD- 327
Query: 196 VHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGA 255
D KP D P ++G+I A + L + + I L+ LG
Sbjct: 328 ---DTKP----------DGSLP-AIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQ 373
Query: 256 YIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPT 315
+ P+ W + G Y+ + P Q R R P+ R
Sbjct: 374 EAL-HPVHYEEKNWCEEQYSGGCYTAYFPPGIMT--------QYGRVIRQPVGR------ 418
Query: 316 SLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG---ARETAN 372
+ FAG T+ G + GAVE+G ARE N
Sbjct: 419 ----------------------------IFFAGTETATKWSGYMEGAVEAGERAAREVLN 450
Query: 373 AI 374
+
Sbjct: 451 GL 452
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 138 ITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW--KDGCQGFNFYWTQQDKMDLFKDM 195
I F P LPA++ I+ L G V K + + +W KD C G + + + D
Sbjct: 281 IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYC-GCMIIEDEDAPISITLD- 338
Query: 196 VHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGA 255
D KP D P ++G+I A + L + + I L+ LG
Sbjct: 339 ---DTKP----------DGSLP-AIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQ 384
Query: 256 YIIPEPIRIVRSAWSINPHFRGSYSHHGP 284
+ P+ W + G Y+ + P
Sbjct: 385 EAL-HPVHYEEKNWCEEQYSGGCYTAYFP 412
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 252 LGGAYIIPEPIRIVRSAWSINPHFRGSYSHH--GPTQHQ-----CRRLGRSSYQQRRPPR 304
+GGAY P+ ++ A + N H G HH G T + + + ++ P
Sbjct: 84 IGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEE 143
Query: 305 APLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVE 364
AP T+LR A ++A+ G LF EA+ ++N AVE
Sbjct: 144 APAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDE---ASLNAAVE 200
Query: 365 SGARETAN 372
+ AN
Sbjct: 201 ETLKFIAN 208
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 252 LGGAYIIPEPIRIVRSAWSINPHFRGSYSHH--GPTQHQ-----CRRLGRSSYQQRRPPR 304
+GGAY P+ ++ A + N H G HH G T + + + ++ P
Sbjct: 84 IGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEE 143
Query: 305 APLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVE 364
AP T+LR A ++A+ G LF EA+ ++N AVE
Sbjct: 144 APAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDE---ASLNAAVE 200
Query: 365 SGARETAN 372
+ AN
Sbjct: 201 ETLKFIAN 208
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 252 LGGAYIIPEPIRIVRSAWSINPHFRGSYSHH--GPTQHQ-----CRRLGRSSYQQRRPPR 304
+GGAY P+ ++ A + N H G HH G T + + + ++ P
Sbjct: 84 IGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEE 143
Query: 305 APLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVE 364
AP T+LR A ++A+ G LF EA+ ++N AV+
Sbjct: 144 APAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDE---ASLNAAVD 200
Query: 365 SGARETAN 372
+ AN
Sbjct: 201 ETLKFIAN 208
>pdb|3U1I|B Chain B, Dengue Virus Protease Covalently Bound To A Peptide
pdb|3U1I|D Chain D, Dengue Virus Protease Covalently Bound To A Peptide
pdb|3U1J|B Chain B, Aprotinin Bound To Dengue Virus Protease
Length = 191
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 311 SYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGAR 368
++Q T+ G+ L+ +P+INREG+ V L+ G + G V+G ++ A
Sbjct: 124 TFQTTTGEIGAIALDFKPGTSGSPIINREGKVVGLY-GNGVVTKNGGYVSGIAQTNAE 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,710,081
Number of Sequences: 62578
Number of extensions: 613160
Number of successful extensions: 1242
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 103
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)