Query psy10795
Match_columns 412
No_of_seqs 362 out of 1554
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:42:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0685|consensus 100.0 6.4E-44 1.4E-48 346.6 17.0 250 89-379 243-493 (498)
2 PLN03000 amine oxidase 100.0 2.9E-40 6.2E-45 348.8 22.6 254 70-383 375-629 (881)
3 PLN02976 amine oxidase 100.0 2.8E-40 6.1E-45 356.4 21.7 273 74-406 934-1218(1713)
4 PLN02568 polyamine oxidase 100.0 2.4E-39 5.2E-44 334.2 23.3 266 70-379 236-537 (539)
5 PLN02676 polyamine oxidase 100.0 3.5E-39 7.6E-44 330.5 24.0 231 90-379 245-475 (487)
6 PLN02328 lysine-specific histo 100.0 1.2E-37 2.5E-42 329.3 22.5 251 70-380 431-682 (808)
7 PLN02529 lysine-specific histo 100.0 2.7E-37 5.9E-42 325.2 24.5 243 76-379 357-600 (738)
8 PLN02268 probable polyamine ox 100.0 7.8E-36 1.7E-40 303.1 22.9 224 90-377 211-434 (435)
9 COG1231 Monoamine oxidase [Ami 100.0 1.1E-33 2.5E-38 275.5 15.8 236 77-379 210-449 (450)
10 KOG0029|consensus 100.0 2.1E-32 4.5E-37 278.3 21.6 237 81-379 224-461 (501)
11 PF01593 Amino_oxidase: Flavin 100.0 2.6E-29 5.6E-34 252.2 18.5 226 89-374 223-450 (450)
12 TIGR03467 HpnE squalene-associ 99.9 3.3E-21 7.1E-26 194.3 18.3 208 89-375 211-419 (419)
13 TIGR00562 proto_IX_ox protopor 99.9 4.5E-21 9.7E-26 196.3 19.0 224 90-378 238-461 (462)
14 TIGR02731 phytoene_desat phyto 99.9 6.7E-21 1.5E-25 194.7 19.0 219 89-373 227-452 (453)
15 PLN02576 protoporphyrinogen ox 99.9 9E-21 1.9E-25 195.9 18.8 238 77-378 240-488 (496)
16 PRK12416 protoporphyrinogen ox 99.9 7.9E-21 1.7E-25 194.7 17.8 233 77-378 227-462 (463)
17 PLN02612 phytoene desaturase 99.8 1.1E-19 2.4E-24 189.9 19.2 225 89-379 322-550 (567)
18 PRK11883 protoporphyrinogen ox 99.8 5.4E-19 1.2E-23 180.2 18.7 228 77-375 222-450 (451)
19 PRK07233 hypothetical protein; 99.7 9.9E-17 2.1E-21 162.6 19.3 230 78-378 200-432 (434)
20 COG3380 Predicted NAD/FAD-depe 99.7 4.7E-18 1E-22 155.1 8.5 211 89-377 117-331 (331)
21 PLN02487 zeta-carotene desatur 99.6 1.1E-14 2.5E-19 151.2 18.8 227 88-377 308-553 (569)
22 TIGR02732 zeta_caro_desat caro 99.6 6.9E-15 1.5E-19 150.9 17.1 223 89-374 233-474 (474)
23 COG1232 HemY Protoporphyrinoge 99.5 6.3E-14 1.4E-18 140.3 13.9 237 68-374 207-443 (444)
24 PRK07208 hypothetical protein; 99.5 2.5E-13 5.4E-18 139.9 17.6 297 13-376 143-460 (479)
25 KOG0685|consensus 99.5 8E-15 1.7E-19 143.9 4.0 73 3-80 300-372 (498)
26 TIGR02733 desat_CrtD C-3',4' d 98.9 1.5E-08 3.2E-13 104.9 15.5 95 73-170 229-331 (492)
27 KOG1276|consensus 98.7 1.7E-07 3.7E-12 91.6 12.5 222 90-374 264-490 (491)
28 TIGR02734 crtI_fam phytoene de 98.7 4E-07 8.6E-12 94.5 14.5 77 89-168 233-312 (502)
29 TIGR02730 carot_isom carotene 98.6 2E-06 4.4E-11 89.0 17.7 79 89-170 243-324 (493)
30 COG3349 Uncharacterized conser 97.8 5.8E-05 1.3E-09 76.3 7.8 221 89-380 229-466 (485)
31 PLN02568 polyamine oxidase 97.1 0.0005 1.1E-08 71.9 5.1 41 5-45 315-360 (539)
32 COG2907 Predicted NAD/FAD-bind 97.0 0.0015 3.2E-08 63.0 6.3 81 81-168 225-305 (447)
33 PRK10015 oxidoreductase; Provi 96.2 0.52 1.1E-05 48.0 19.2 39 343-381 296-339 (429)
34 PRK10157 putative oxidoreducta 96.0 0.17 3.6E-06 51.5 14.5 42 89-131 122-163 (428)
35 PLN02976 amine oxidase 95.8 0.0065 1.4E-07 68.8 3.5 41 5-45 1012-1052(1713)
36 TIGR01984 UbiH 2-polyprenyl-6- 95.7 1.1 2.4E-05 44.4 18.7 43 89-132 120-162 (382)
37 PF13738 Pyr_redox_3: Pyridine 95.3 0.029 6.3E-07 50.4 5.1 41 89-130 96-136 (203)
38 PLN03000 amine oxidase 95.0 0.026 5.6E-07 61.6 4.4 40 5-44 446-485 (881)
39 TIGR01988 Ubi-OHases Ubiquinon 94.9 1.4 3E-05 43.6 16.6 41 90-131 122-162 (385)
40 PRK07364 2-octaprenyl-6-methox 94.7 3.5 7.5E-05 41.4 19.0 42 89-131 136-180 (415)
41 PRK07494 2-octaprenyl-6-methox 94.7 1.1 2.4E-05 44.6 15.1 40 91-131 127-166 (388)
42 PLN02676 polyamine oxidase 94.1 0.052 1.1E-06 56.3 4.2 29 5-33 301-329 (487)
43 PLN02529 lysine-specific histo 93.5 0.078 1.7E-06 57.4 4.3 39 5-43 422-460 (738)
44 PRK08020 ubiF 2-octaprenyl-3-m 93.4 7.7 0.00017 38.6 18.3 43 89-132 127-169 (391)
45 PLN02328 lysine-specific histo 93.4 0.088 1.9E-06 57.4 4.5 38 5-42 502-539 (808)
46 PRK08849 2-octaprenyl-3-methyl 93.3 9.5 0.00021 38.0 19.4 43 89-132 125-167 (384)
47 KOG0029|consensus 93.1 0.083 1.8E-06 54.7 3.6 28 4-31 285-312 (501)
48 KOG4254|consensus 92.7 5.3 0.00012 40.5 15.3 65 88-157 277-343 (561)
49 PF13454 NAD_binding_9: FAD-NA 92.4 0.28 6E-06 42.5 5.4 36 93-129 119-154 (156)
50 COG2081 Predicted flavoprotein 92.3 0.26 5.6E-06 48.9 5.5 40 89-129 125-164 (408)
51 PF01266 DAO: FAD dependent ox 91.9 0.19 4.2E-06 48.8 4.3 42 89-132 161-203 (358)
52 TIGR03197 MnmC_Cterm tRNA U-34 91.4 0.36 7.8E-06 48.1 5.8 43 89-132 148-190 (381)
53 COG0579 Predicted dehydrogenas 91.0 0.45 9.8E-06 48.2 5.9 46 88-134 166-213 (429)
54 PTZ00363 rab-GDP dissociation 90.4 0.55 1.2E-05 48.0 6.1 63 89-171 246-310 (443)
55 PF03486 HI0933_like: HI0933-l 89.0 0.64 1.4E-05 47.0 5.2 40 89-129 123-163 (409)
56 PRK07236 hypothetical protein; 88.4 0.91 2E-05 45.3 5.9 41 89-130 112-152 (386)
57 PRK07588 hypothetical protein; 88.4 0.84 1.8E-05 45.6 5.7 44 89-133 116-159 (391)
58 PF05834 Lycopene_cycl: Lycope 88.2 29 0.00063 34.5 18.3 42 89-131 100-141 (374)
59 TIGR00031 UDP-GALP_mutase UDP- 88.2 0.15 3.2E-06 51.0 0.0 111 10-135 139-250 (377)
60 TIGR03219 salicylate_mono sali 88.1 0.95 2.1E-05 45.6 5.9 43 89-132 117-159 (414)
61 PRK06847 hypothetical protein; 87.5 1.1 2.4E-05 44.4 5.8 42 89-131 121-162 (375)
62 PF07156 Prenylcys_lyase: Pren 87.5 1.4 3.1E-05 43.9 6.5 42 89-132 139-187 (368)
63 PRK09126 hypothetical protein; 86.8 1.3 2.9E-05 44.1 6.0 42 89-131 125-166 (392)
64 COG0654 UbiH 2-polyprenyl-6-me 86.7 36 0.00078 33.9 19.9 41 90-131 120-161 (387)
65 PRK05868 hypothetical protein; 86.4 1.4 3E-05 43.9 5.9 42 89-131 118-159 (372)
66 PRK05714 2-octaprenyl-3-methyl 85.9 1.6 3.5E-05 43.7 6.1 43 89-132 126-168 (405)
67 TIGR01377 soxA_mon sarcosine o 85.9 1.6 3.5E-05 43.1 6.1 41 89-131 159-199 (380)
68 TIGR02352 thiamin_ThiO glycine 85.5 1.4 3.1E-05 42.5 5.4 42 89-132 151-193 (337)
69 PRK07333 2-octaprenyl-6-methox 85.5 1.7 3.7E-05 43.4 6.0 41 89-130 125-165 (403)
70 PRK06753 hypothetical protein; 85.3 1.7 3.6E-05 43.1 5.7 43 89-132 110-152 (373)
71 PTZ00383 malate:quinone oxidor 85.0 1.9 4.2E-05 44.7 6.2 43 90-133 232-274 (497)
72 PRK08773 2-octaprenyl-3-methyl 85.0 1.9 4.1E-05 43.1 6.1 42 89-131 127-168 (392)
73 PLN02268 probable polyamine ox 84.8 0.77 1.7E-05 46.6 3.2 28 5-32 267-294 (435)
74 PRK05732 2-octaprenyl-6-methox 84.8 2 4.3E-05 42.8 6.1 42 89-131 127-168 (395)
75 PRK11259 solA N-methyltryptoph 84.5 1.9 4.1E-05 42.6 5.7 42 89-132 163-204 (376)
76 PRK11728 hydroxyglutarate oxid 84.2 2.2 4.7E-05 42.7 6.1 42 89-132 163-204 (393)
77 TIGR00275 flavoprotein, HI0933 83.8 2.9 6.2E-05 42.2 6.8 40 89-130 119-158 (400)
78 PRK06834 hypothetical protein; 83.8 2.2 4.9E-05 44.2 6.1 42 89-131 114-155 (488)
79 COG1231 Monoamine oxidase [Ami 83.4 0.89 1.9E-05 45.9 2.8 31 3-33 273-303 (450)
80 COG1233 Phytoene dehydrogenase 83.4 1.7 3.7E-05 45.1 5.0 44 89-133 238-282 (487)
81 PRK07190 hypothetical protein; 83.1 2.3 5.1E-05 44.0 5.9 43 89-132 123-165 (487)
82 PRK08013 oxidoreductase; Provi 82.7 2.5 5.5E-05 42.4 5.9 42 89-131 126-167 (400)
83 PRK08850 2-octaprenyl-6-methox 82.3 2.6 5.6E-05 42.3 5.8 42 89-131 126-167 (405)
84 PLN02172 flavin-containing mon 82.0 2.3 5E-05 43.8 5.3 41 90-131 128-172 (461)
85 PRK08163 salicylate hydroxylas 81.8 2.7 5.8E-05 41.9 5.7 41 90-131 125-165 (396)
86 PRK09897 hypothetical protein; 81.4 2.6 5.6E-05 44.2 5.5 40 90-130 124-164 (534)
87 PRK06116 glutathione reductase 81.1 3.2 7E-05 42.3 6.1 41 89-130 222-263 (450)
88 PRK01747 mnmC bifunctional tRN 81.1 2.6 5.6E-05 45.5 5.5 43 89-132 421-463 (662)
89 COG2509 Uncharacterized FAD-de 81.0 2.7 5.9E-05 42.5 5.2 42 89-131 187-229 (486)
90 PRK12409 D-amino acid dehydrog 79.8 3.2 6.9E-05 41.7 5.4 43 89-132 211-258 (410)
91 TIGR01292 TRX_reduct thioredox 79.8 3.6 7.8E-05 38.9 5.6 40 89-130 71-110 (300)
92 PRK00711 D-amino acid dehydrog 79.4 3.5 7.5E-05 41.4 5.6 42 89-132 215-257 (416)
93 PRK13339 malate:quinone oxidor 79.0 4 8.6E-05 42.4 5.9 43 89-132 199-247 (497)
94 TIGR03329 Phn_aa_oxid putative 78.8 3.7 8E-05 42.1 5.6 39 89-130 197-235 (460)
95 PRK04965 NADH:flavorubredoxin 78.6 4 8.6E-05 40.6 5.7 41 89-130 197-237 (377)
96 PRK07045 putative monooxygenas 78.2 4 8.6E-05 40.7 5.5 44 89-133 121-166 (388)
97 PRK07846 mycothione reductase; 77.7 4.3 9.4E-05 41.6 5.7 41 89-130 220-260 (451)
98 TIGR01424 gluta_reduc_2 glutat 77.4 4.8 0.0001 41.1 5.9 41 89-130 221-261 (446)
99 PLN02507 glutathione reductase 77.0 5 0.00011 41.7 6.0 41 89-130 258-298 (499)
100 PRK05249 soluble pyridine nucl 76.9 4.9 0.00011 41.1 5.9 41 89-130 230-270 (461)
101 PRK06184 hypothetical protein; 76.9 4.6 0.0001 41.9 5.7 44 89-133 123-169 (502)
102 TIGR03452 mycothione_red mycot 76.7 5.3 0.00012 40.9 6.0 41 89-130 223-263 (452)
103 TIGR01350 lipoamide_DH dihydro 75.6 5.7 0.00012 40.6 5.9 41 89-130 225-267 (461)
104 PRK06416 dihydrolipoamide dehy 75.4 5.1 0.00011 41.1 5.5 41 89-130 227-270 (462)
105 TIGR01320 mal_quin_oxido malat 75.4 4.9 0.00011 41.6 5.4 43 89-132 192-240 (483)
106 PRK07845 flavoprotein disulfid 74.8 6.2 0.00013 40.6 5.9 41 89-130 232-272 (466)
107 COG1249 Lpd Pyruvate/2-oxoglut 74.8 5.8 0.00013 40.7 5.6 40 89-129 228-269 (454)
108 PLN02927 antheraxanthin epoxid 74.6 5.4 0.00012 43.0 5.5 42 90-132 207-248 (668)
109 PRK06185 hypothetical protein; 74.0 98 0.0021 30.8 19.7 42 89-131 123-168 (407)
110 PRK07608 ubiquinone biosynthes 73.7 6.8 0.00015 38.8 5.8 40 90-131 127-166 (388)
111 PF00743 FMO-like: Flavin-bind 73.1 5.2 0.00011 42.0 4.9 43 89-131 100-149 (531)
112 TIGR03140 AhpF alkyl hydropero 72.3 8 0.00017 40.4 6.1 42 89-131 281-322 (515)
113 TIGR02032 GG-red-SF geranylger 71.7 8 0.00017 36.3 5.6 42 89-131 105-147 (295)
114 PRK06183 mhpA 3-(3-hydroxyphen 71.4 6.7 0.00015 41.1 5.4 44 89-133 128-175 (538)
115 TIGR03862 flavo_PP4765 unchara 70.7 8 0.00017 38.7 5.4 37 341-377 336-375 (376)
116 PLN02463 lycopene beta cyclase 70.2 8.5 0.00018 39.5 5.6 40 89-130 128-167 (447)
117 PRK05257 malate:quinone oxidor 70.1 8.8 0.00019 39.9 5.8 42 90-132 199-246 (494)
118 TIGR03862 flavo_PP4765 unchara 70.1 3.2 6.9E-05 41.5 2.5 39 89-130 100-139 (376)
119 PRK15317 alkyl hydroperoxide r 70.1 9.2 0.0002 39.9 6.0 42 89-131 280-321 (517)
120 PF00070 Pyr_redox: Pyridine n 68.6 5.2 0.00011 30.0 2.9 27 89-116 54-80 (80)
121 PRK09754 phenylpropionate diox 68.5 10 0.00022 38.0 5.8 40 89-130 200-239 (396)
122 PRK06617 2-octaprenyl-6-methox 68.4 10 0.00022 37.6 5.7 40 90-131 120-159 (374)
123 TIGR01989 COQ6 Ubiquinone bios 68.2 10 0.00022 38.6 5.8 43 90-132 135-183 (437)
124 TIGR03378 glycerol3P_GlpB glyc 68.1 10 0.00023 38.4 5.6 41 89-130 277-320 (419)
125 KOG1346|consensus 67.8 11 0.00024 37.9 5.5 69 59-130 241-309 (659)
126 PRK12831 putative oxidoreducta 66.9 4.8 0.0001 41.4 3.1 39 339-379 424-462 (464)
127 TIGR01373 soxB sarcosine oxida 66.4 12 0.00027 37.4 5.9 42 89-131 197-239 (407)
128 KOG2820|consensus 66.3 10 0.00022 37.0 4.9 46 89-134 167-214 (399)
129 PF13434 K_oxygenase: L-lysine 65.9 7.9 0.00017 38.2 4.2 38 91-129 295-338 (341)
130 TIGR03364 HpnW_proposed FAD de 65.9 10 0.00022 37.3 5.1 38 89-132 160-197 (365)
131 PRK06996 hypothetical protein; 65.7 11 0.00024 37.7 5.4 40 89-129 129-171 (398)
132 PRK06475 salicylate hydroxylas 65.6 12 0.00027 37.4 5.7 45 89-134 122-169 (400)
133 TIGR01292 TRX_reduct thioredox 65.3 4.8 0.0001 38.1 2.6 36 340-376 264-299 (300)
134 PRK11445 putative oxidoreducta 65.2 14 0.0003 36.4 5.9 43 89-132 112-157 (351)
135 PRK12266 glpD glycerol-3-phosp 65.1 11 0.00023 39.3 5.3 43 89-132 169-216 (508)
136 PRK08010 pyridine nucleotide-d 65.0 13 0.00029 37.7 5.9 40 89-130 213-252 (441)
137 PRK12810 gltD glutamate syntha 64.1 6.4 0.00014 40.6 3.4 39 340-380 429-467 (471)
138 PRK14727 putative mercuric red 64.0 14 0.00031 38.0 6.0 40 89-130 242-281 (479)
139 PRK06126 hypothetical protein; 63.8 11 0.00024 39.5 5.2 43 89-132 141-188 (545)
140 PF06039 Mqo: Malate:quinone o 63.7 15 0.00032 37.6 5.7 45 89-133 196-245 (488)
141 PRK07251 pyridine nucleotide-d 63.6 14 0.0003 37.5 5.7 40 89-130 212-251 (438)
142 PF13434 K_oxygenase: L-lysine 62.9 8.6 0.00019 37.9 3.9 40 89-129 109-156 (341)
143 PRK08244 hypothetical protein; 62.6 14 0.00029 38.3 5.5 42 89-131 114-158 (493)
144 PRK06327 dihydrolipoamide dehy 62.4 13 0.00029 38.2 5.4 41 89-130 238-282 (475)
145 PRK12769 putative oxidoreducta 62.3 6.5 0.00014 42.4 3.1 39 339-379 615-653 (654)
146 TIGR01421 gluta_reduc_1 glutat 62.0 17 0.00036 37.2 6.0 41 89-130 221-263 (450)
147 PRK09754 phenylpropionate diox 61.9 14 0.00031 36.9 5.4 40 89-131 72-111 (396)
148 TIGR03385 CoA_CoA_reduc CoA-di 61.7 16 0.00034 37.0 5.7 41 89-130 58-101 (427)
149 PTZ00052 thioredoxin reductase 61.6 17 0.00037 37.8 6.0 41 89-130 236-276 (499)
150 PRK07818 dihydrolipoamide dehy 61.5 16 0.00034 37.5 5.7 40 89-129 227-270 (466)
151 PRK13369 glycerol-3-phosphate 60.0 16 0.00035 37.9 5.5 43 89-132 169-215 (502)
152 PF01593 Amino_oxidase: Flavin 59.1 8.1 0.00018 38.1 3.0 40 4-43 277-316 (450)
153 TIGR01423 trypano_reduc trypan 59.0 20 0.00044 37.1 6.0 41 89-130 245-286 (486)
154 PRK09564 coenzyme A disulfide 58.8 19 0.00041 36.5 5.7 42 89-131 70-114 (444)
155 PRK14694 putative mercuric red 58.8 20 0.00043 36.9 5.8 40 89-130 232-271 (468)
156 PRK07538 hypothetical protein; 57.5 18 0.0004 36.3 5.3 43 90-133 119-166 (413)
157 TIGR02374 nitri_red_nirB nitri 57.5 16 0.00035 40.3 5.2 39 89-130 68-106 (785)
158 PRK12809 putative oxidoreducta 57.3 9 0.0002 41.2 3.1 40 339-380 598-637 (639)
159 PRK10262 thioredoxin reductase 57.2 9.7 0.00021 36.8 3.1 41 339-380 277-317 (321)
160 PRK05329 anaerobic glycerol-3- 56.9 23 0.00049 36.1 5.8 41 89-130 273-316 (422)
161 TIGR02374 nitri_red_nirB nitri 56.8 20 0.00042 39.7 5.7 41 89-130 196-236 (785)
162 PRK12771 putative glutamate sy 56.7 9.3 0.0002 40.4 3.1 41 340-382 408-448 (564)
163 COG2072 TrkA Predicted flavopr 56.7 19 0.00041 36.9 5.2 42 89-130 98-142 (443)
164 TIGR01790 carotene-cycl lycope 56.3 23 0.00051 35.0 5.8 43 89-132 99-141 (388)
165 PRK06370 mercuric reductase; V 56.1 24 0.00053 36.1 6.0 41 89-130 226-269 (463)
166 TIGR02485 CobZ_N-term precorri 55.4 22 0.00048 36.0 5.5 40 89-129 137-180 (432)
167 PRK11749 dihydropyrimidine deh 55.4 11 0.00023 38.7 3.2 39 340-380 416-454 (457)
168 PRK13748 putative mercuric red 55.0 24 0.00052 37.1 5.9 40 89-130 324-363 (561)
169 TIGR01813 flavo_cyto_c flavocy 53.5 24 0.00053 35.7 5.5 41 89-130 144-190 (439)
170 TIGR01438 TGR thioredoxin and 53.5 27 0.00058 36.2 5.8 41 89-130 234-277 (484)
171 TIGR03169 Nterm_to_SelD pyridi 53.3 23 0.0005 34.8 5.1 37 89-130 205-241 (364)
172 PF01494 FAD_binding_3: FAD bi 53.1 17 0.00037 34.9 4.2 43 89-132 125-172 (356)
173 TIGR03385 CoA_CoA_reduc CoA-di 53.1 28 0.0006 35.2 5.8 39 89-130 193-231 (427)
174 TIGR02053 MerA mercuric reduct 52.9 25 0.00055 35.9 5.5 41 89-130 221-264 (463)
175 PRK08132 FAD-dependent oxidore 52.8 26 0.00056 36.8 5.7 43 89-132 140-185 (547)
176 PRK13984 putative oxidoreducta 52.2 12 0.00026 39.9 3.0 38 339-379 566-603 (604)
177 TIGR01316 gltA glutamate synth 52.1 10 0.00022 38.8 2.5 36 340-377 414-449 (449)
178 PRK04965 NADH:flavorubredoxin 51.6 25 0.00053 34.9 5.1 38 89-130 72-109 (377)
179 PRK08243 4-hydroxybenzoate 3-m 51.3 28 0.00061 34.7 5.4 45 89-133 117-164 (392)
180 KOG1346|consensus 50.7 12 0.00025 37.7 2.4 42 88-130 406-447 (659)
181 PRK12778 putative bifunctional 50.4 13 0.00028 40.8 3.1 39 339-379 713-751 (752)
182 TIGR01317 GOGAT_sm_gam glutama 49.7 13 0.00029 38.5 2.8 40 339-380 442-481 (485)
183 PRK09564 coenzyme A disulfide 49.4 33 0.00071 34.8 5.7 40 89-130 205-244 (444)
184 PRK12814 putative NADPH-depend 49.2 15 0.00033 39.6 3.3 41 339-381 464-504 (652)
185 PRK06115 dihydrolipoamide dehy 49.2 31 0.00066 35.5 5.4 41 89-130 229-274 (466)
186 PRK13512 coenzyme A disulfide 49.1 29 0.00064 35.3 5.2 42 89-131 72-116 (438)
187 PRK12775 putative trifunctiona 49.1 16 0.00034 41.6 3.5 41 339-381 718-758 (1006)
188 PTZ00318 NADH dehydrogenase-li 48.9 33 0.00071 34.7 5.5 37 89-130 242-278 (424)
189 TIGR03140 AhpF alkyl hydropero 48.5 16 0.00034 38.2 3.2 39 340-379 476-514 (515)
190 PRK14989 nitrite reductase sub 48.1 30 0.00065 38.6 5.4 39 89-130 73-111 (847)
191 PRK14989 nitrite reductase sub 47.8 36 0.00077 38.0 5.9 42 89-131 201-244 (847)
192 PRK12779 putative bifunctional 47.7 14 0.0003 41.6 2.8 40 339-380 590-629 (944)
193 PRK06481 fumarate reductase fl 47.4 37 0.0008 35.4 5.7 40 89-129 204-248 (506)
194 COG2081 Predicted flavoprotein 47.4 11 0.00025 37.6 1.8 37 341-377 368-407 (408)
195 PRK11101 glpA sn-glycerol-3-ph 47.4 31 0.00068 36.3 5.2 43 89-132 163-211 (546)
196 KOG1399|consensus 46.8 32 0.00069 35.3 5.0 42 89-131 106-152 (448)
197 TIGR03169 Nterm_to_SelD pyridi 46.8 25 0.00054 34.6 4.2 42 340-381 270-314 (364)
198 TIGR03377 glycerol3P_GlpA glyc 46.0 39 0.00084 35.2 5.6 43 89-132 142-190 (516)
199 PRK15317 alkyl hydroperoxide r 45.7 21 0.00045 37.3 3.6 42 339-381 474-515 (517)
200 TIGR01318 gltD_gamma_fam gluta 45.6 18 0.0004 37.2 3.1 37 340-378 430-466 (467)
201 COG1252 Ndh NADH dehydrogenase 45.6 22 0.00047 35.9 3.5 45 338-382 288-336 (405)
202 PRK06467 dihydrolipoamide dehy 45.3 39 0.00085 34.8 5.5 40 90-130 229-272 (471)
203 PF01134 GIDA: Glucose inhibit 45.3 35 0.00076 34.3 4.9 36 94-130 114-150 (392)
204 PRK06912 acoL dihydrolipoamide 44.8 47 0.001 34.0 6.0 41 89-130 225-266 (458)
205 PRK04176 ribulose-1,5-biphosph 44.5 19 0.00041 33.9 2.8 38 342-379 214-256 (257)
206 COG1635 THI4 Ribulose 1,5-bisp 43.4 22 0.00048 32.8 2.9 39 341-379 218-261 (262)
207 PRK12770 putative glutamate sy 43.2 24 0.00051 34.7 3.4 37 340-378 314-350 (352)
208 TIGR02028 ChlP geranylgeranyl 43.1 37 0.0008 34.1 4.8 38 342-379 270-310 (398)
209 COG0492 TrxB Thioredoxin reduc 42.8 42 0.00092 32.5 5.0 42 338-380 262-303 (305)
210 PRK06134 putative FAD-binding 41.7 51 0.0011 35.0 5.8 42 89-131 231-277 (581)
211 PRK13512 coenzyme A disulfide 41.5 52 0.0011 33.5 5.7 37 89-130 203-239 (438)
212 TIGR03143 AhpF_homolog putativ 41.4 26 0.00056 37.0 3.5 40 340-380 272-311 (555)
213 PLN02697 lycopene epsilon cycl 41.3 49 0.0011 34.7 5.5 42 89-132 206-248 (529)
214 COG0665 DadA Glycine/D-amino a 40.8 49 0.0011 32.5 5.3 41 90-132 172-212 (387)
215 COG1251 NirB NAD(P)H-nitrite r 40.0 48 0.001 35.9 5.1 47 89-145 73-119 (793)
216 PRK08274 tricarballylate dehyd 39.9 45 0.00098 34.1 5.0 40 89-129 145-189 (466)
217 PF01134 GIDA: Glucose inhibit 39.5 27 0.00058 35.1 3.0 37 341-380 355-391 (392)
218 TIGR00136 gidA glucose-inhibit 39.3 34 0.00073 36.5 3.9 55 341-398 357-416 (617)
219 KOG1335|consensus 39.1 57 0.0012 32.7 5.1 44 89-132 266-314 (506)
220 PTZ00058 glutathione reductase 38.9 65 0.0014 34.1 6.0 41 89-130 292-334 (561)
221 PRK06175 L-aspartate oxidase; 38.7 55 0.0012 33.3 5.3 41 89-130 143-187 (433)
222 TIGR02360 pbenz_hydroxyl 4-hyd 37.7 54 0.0012 32.7 5.1 44 89-132 117-163 (390)
223 PF07992 Pyr_redox_2: Pyridine 37.6 34 0.00073 30.0 3.2 41 89-130 72-120 (201)
224 TIGR03315 Se_ygfK putative sel 37.4 18 0.0004 40.9 1.7 39 340-380 804-842 (1012)
225 PRK06292 dihydrolipoamide dehy 36.9 70 0.0015 32.6 5.8 40 90-130 224-266 (460)
226 PTZ00318 NADH dehydrogenase-li 36.8 36 0.00078 34.4 3.6 42 340-381 307-351 (424)
227 PF03486 HI0933_like: HI0933-l 36.6 22 0.00047 36.0 2.0 31 341-371 375-408 (409)
228 PLN02546 glutathione reductase 35.9 73 0.0016 33.7 5.8 42 89-130 307-348 (558)
229 TIGR01789 lycopene_cycl lycope 34.9 60 0.0013 32.3 4.8 35 92-131 103-137 (370)
230 TIGR00292 thiazole biosynthesi 34.5 30 0.00065 32.5 2.5 38 341-378 212-254 (254)
231 PF00890 FAD_binding_2: FAD bi 34.3 61 0.0013 32.4 4.8 43 89-132 155-203 (417)
232 COG0644 FixC Dehydrogenases (f 33.3 80 0.0017 31.6 5.4 41 89-130 109-150 (396)
233 PRK12842 putative succinate de 33.2 81 0.0018 33.4 5.7 39 342-380 525-570 (574)
234 PRK05976 dihydrolipoamide dehy 33.1 82 0.0018 32.3 5.6 43 89-131 235-280 (472)
235 PRK05335 tRNA (uracil-5-)-meth 33.0 35 0.00076 34.8 2.7 37 341-380 330-366 (436)
236 COG0492 TrxB Thioredoxin reduc 32.5 47 0.001 32.2 3.5 40 89-131 75-114 (305)
237 PLN00093 geranylgeranyl diphos 32.4 64 0.0014 33.0 4.6 38 342-379 309-349 (450)
238 PRK10262 thioredoxin reductase 30.9 89 0.0019 30.0 5.2 41 89-130 199-246 (321)
239 PRK05192 tRNA uridine 5-carbox 30.8 74 0.0016 34.0 4.8 38 91-130 117-155 (618)
240 PTZ00153 lipoamide dehydrogena 30.6 98 0.0021 33.5 5.8 41 89-130 368-425 (659)
241 PF00996 GDI: GDP dissociation 30.4 98 0.0021 31.7 5.5 38 89-127 246-284 (438)
242 COG0644 FixC Dehydrogenases (f 30.2 79 0.0017 31.6 4.8 39 342-380 269-310 (396)
243 PRK09853 putative selenate red 29.6 39 0.00084 38.3 2.6 37 340-378 806-842 (1019)
244 TIGR00275 flavoprotein, HI0933 28.5 27 0.00058 35.1 1.1 29 342-370 368-399 (400)
245 TIGR02023 BchP-ChlP geranylger 28.3 58 0.0013 32.3 3.5 37 343-379 265-304 (388)
246 TIGR00562 proto_IX_ox protopor 28.0 61 0.0013 32.9 3.6 39 5-43 290-328 (462)
247 COG3486 IucD Lysine/ornithine 28.0 57 0.0012 32.9 3.1 49 77-130 104-155 (436)
248 TIGR02462 pyranose_ox pyranose 27.7 1.2E+02 0.0027 31.9 5.8 39 90-129 229-276 (544)
249 PF00732 GMC_oxred_N: GMC oxid 27.3 1.1E+02 0.0024 28.8 5.1 41 89-129 207-255 (296)
250 PF08248 Tryp_FSAP: Tryptophyl 27.3 35 0.00075 15.9 0.7 8 26-33 1-8 (12)
251 KOG1336|consensus 26.6 99 0.0021 31.7 4.6 41 89-132 141-181 (478)
252 KOG1336|consensus 26.5 89 0.0019 32.1 4.3 43 89-131 269-312 (478)
253 TIGR01816 sdhA_forward succina 26.5 51 0.0011 34.8 2.8 42 89-131 133-180 (565)
254 COG0446 HcaD Uncharacterized N 26.3 1.2E+02 0.0026 29.8 5.3 41 89-130 192-235 (415)
255 PRK12442 translation initiatio 25.9 98 0.0021 24.0 3.5 46 91-138 6-67 (87)
256 TIGR01812 sdhA_frdA_Gneg succi 25.3 1.2E+02 0.0026 31.9 5.4 42 89-131 143-190 (566)
257 TIGR00551 nadB L-aspartate oxi 25.2 1E+02 0.0022 31.9 4.7 43 89-132 143-189 (488)
258 COG1252 Ndh NADH dehydrogenase 25.0 99 0.0022 31.3 4.3 37 89-130 223-260 (405)
259 PRK12810 gltD glutamate syntha 24.9 1.2E+02 0.0025 31.3 5.0 41 89-130 343-398 (471)
260 KOG2415|consensus 24.8 78 0.0017 32.1 3.4 68 342-409 379-466 (621)
261 PRK09078 sdhA succinate dehydr 24.5 64 0.0014 34.4 3.1 37 342-378 386-429 (598)
262 COG3486 IucD Lysine/ornithine 24.3 1.2E+02 0.0026 30.7 4.6 41 90-131 293-339 (436)
263 PRK11749 dihydropyrimidine deh 24.3 1.2E+02 0.0026 30.9 5.0 41 89-130 325-385 (457)
264 PRK08205 sdhA succinate dehydr 24.2 68 0.0015 34.0 3.2 37 342-378 376-419 (583)
265 PF04820 Trp_halogenase: Trypt 24.1 1.3E+02 0.0029 30.7 5.3 43 89-132 168-211 (454)
266 TIGR02023 BchP-ChlP geranylger 23.7 1.2E+02 0.0026 30.1 4.8 40 89-130 106-153 (388)
267 PRK08294 phenol 2-monooxygenas 23.2 1.4E+02 0.003 32.1 5.4 40 91-131 159-209 (634)
268 PRK06116 glutathione reductase 23.0 70 0.0015 32.5 3.0 35 339-375 293-327 (450)
269 PRK06452 sdhA succinate dehydr 23.0 70 0.0015 33.9 3.0 38 342-379 361-405 (566)
270 PRK07121 hypothetical protein; 22.8 1.7E+02 0.0036 30.2 5.8 42 89-131 191-238 (492)
271 PLN02661 Putative thiazole syn 22.7 72 0.0016 31.6 2.8 41 341-381 286-331 (357)
272 PRK13977 myosin-cross-reactive 22.5 1.6E+02 0.0034 31.3 5.4 34 342-375 487-522 (576)
273 PRK07843 3-ketosteroid-delta-1 22.3 1.6E+02 0.0034 31.1 5.5 41 89-130 222-267 (557)
274 TIGR01372 soxA sarcosine oxida 22.2 67 0.0015 36.5 2.8 36 341-379 438-473 (985)
275 PLN00128 Succinate dehydrogena 22.0 77 0.0017 34.1 3.1 37 342-378 424-467 (635)
276 PRK05945 sdhA succinate dehydr 21.9 1.6E+02 0.0034 31.3 5.4 42 89-131 149-196 (575)
277 PRK06854 adenylylsulfate reduc 21.6 1.6E+02 0.0035 31.4 5.4 39 89-128 147-191 (608)
278 PLN02464 glycerol-3-phosphate 21.3 1.9E+02 0.0041 31.1 5.9 44 89-132 246-296 (627)
279 TIGR01424 gluta_reduc_2 glutat 20.3 85 0.0018 32.0 2.9 34 340-375 292-325 (446)
280 PRK04176 ribulose-1,5-biphosph 20.1 1.6E+02 0.0035 27.6 4.5 41 89-130 118-171 (257)
No 1
>KOG0685|consensus
Probab=100.00 E-value=6.4e-44 Score=346.61 Aligned_cols=250 Identities=41% Similarity=0.678 Sum_probs=216.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcc-cccCCCcHHHHHHHhcCCCcceeEEEEEc
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLI-TFVPSLPAQKLNAIEGLNFGTVDKIFIRF 167 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i-~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f 167 (412)
.++|+++++|.+|.++..+.|+|++.||+.+.||+||||+|+++|++..- .|.|+||..|++||+++++|+..|+||+|
T Consensus 243 ~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~ 322 (498)
T KOG0685|consen 243 WKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEF 322 (498)
T ss_pred hhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEc
Confidence 46788889999999955578999999999999999999999999998543 89999999999999999999999999999
Q ss_pred CCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHHH
Q psy10795 168 PAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRL 247 (412)
Q Consensus 168 ~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~~ 247 (412)
++|||+.++.++.++|.+.++..++.. ...|...++.+.+.+..+.+|++|++|..++.++.++|||+.+.+...
T Consensus 323 E~pfwp~~~~~i~~lw~~e~l~e~r~~-----~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~ 397 (498)
T KOG0685|consen 323 EEPFWPSDWNGIQLLWLDEDLEELRST-----LDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKL 397 (498)
T ss_pred cCCCCCCCCceeEEEEecCcHHHHhhh-----hHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHH
Confidence 999999999999999988875555433 356888888888877777899999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcc
Q psy10795 248 FRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTS 327 (412)
Q Consensus 248 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 327 (412)
|++++++ ..+|+|.++.+++|.++||++|||||..+|+ .| .+..
T Consensus 398 lr~fl~n-~~iP~p~kilRs~W~snp~frGSYSY~svgs----------------------------~~-------~d~~ 441 (498)
T KOG0685|consen 398 LRKFLKN-PEIPKPKKILRSQWISNPFFRGSYSYRSVGS----------------------------DG-------SDTG 441 (498)
T ss_pred HHHhcCC-CCCCCchhhhhhcccCCCccCceeeEeeccc----------------------------cc-------cccc
Confidence 9999994 5799999999999999999999999995542 22 1122
Q ss_pred hHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 328 AADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 328 ~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.-++..|..+.+++|.|.||||||+..+++|+|||++||.|+|+++++.+..
T Consensus 442 ~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 442 ALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred hhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 3334445545567889999999999999999999999999999999996654
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=2.9e-40 Score=348.75 Aligned_cols=254 Identities=30% Similarity=0.448 Sum_probs=207.6
Q ss_pred eccCCcceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHH
Q psy10795 70 MDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKL 149 (412)
Q Consensus 70 ~v~~~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~ 149 (412)
.+.+....|..++++.+ .|+||++|++|++ ++++|+|++.+ ++++||+||||+|+++|++..|.|.|+||+.|.
T Consensus 375 ~v~GG~~~LieaLa~~L----~I~Ln~~Vt~I~~-~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~ 448 (881)
T PLN03000 375 FLPGGNGRLVQALAENV----PILYEKTVQTIRY-GSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKL 448 (881)
T ss_pred EeCCCHHHHHHHHHhhC----CcccCCcEEEEEE-CCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHH
Confidence 34444445666666666 3999999999999 88899998765 489999999999999999777999999999999
Q ss_pred HHHhcCCCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccch
Q psy10795 150 NAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229 (412)
Q Consensus 150 ~ai~~l~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a 229 (412)
+||++++||.+.||++.|+++||+.+...|++++.+... .+ .|.. .+++.+.. +..+|++|++|+.|
T Consensus 449 ~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~---rg--------~~~~-f~s~sp~~-G~pVLvafv~Gd~A 515 (881)
T PLN03000 449 DCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNY---RG--------EFFL-FYSYAPVA-GGPLLIALVAGEAA 515 (881)
T ss_pred HHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCC---Cc--------eeEE-EeCCCCCC-CCcEEEEEecCchh
Confidence 999999999999999999999999876777776443321 11 1111 12222222 34589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCc
Q psy10795 230 RYMETLPMAVLQADIMRLFRHFLGGA-YIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLC 308 (412)
Q Consensus 230 ~~~~~lsdeel~~~~l~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~ 308 (412)
..++.++++++++.++++|+++|+.. ..+++|..+.+++|.+|||++|+|+++.||+.
T Consensus 516 ~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~--------------------- 574 (881)
T PLN03000 516 HKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGAS--------------------- 574 (881)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCc---------------------
Confidence 99999999999999999999999731 23578999999999999999999999977642
Q ss_pred cccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcchh
Q psy10795 309 RRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREGFF 383 (412)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~~~ 383 (412)
..+++.|++|+.+ +|||||||||+..|+||||||++||+|||++|++.++.....
T Consensus 575 ----------------~~~~d~LaePv~~----GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 575 ----------------GDDYDILAESVGD----GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred ----------------hHHHHHHhCcCCC----CcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 1467889999842 499999999999999999999999999999999998876443
No 3
>PLN02976 amine oxidase
Probab=100.00 E-value=2.8e-40 Score=356.43 Aligned_cols=273 Identities=26% Similarity=0.410 Sum_probs=217.3
Q ss_pred CcceeeecCCcCCCCCCcEEcCCeEEEEEec---------CCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCC
Q psy10795 74 DPLTLLVSGQTPVDLSNKILYKKEVNKIDWE---------YQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSL 144 (412)
Q Consensus 74 ~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~---------~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~L 144 (412)
....|..+++..+ .|+||++|++|.+. .+++|.|++.+|++++||+||||+|+++|+...|.|.|+|
T Consensus 934 GYqqLIeALAe~L----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPL 1009 (1713)
T PLN02976 934 GYSNVVESLAEGL----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPL 1009 (1713)
T ss_pred CHHHHHHHHHhhC----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcc
Confidence 3334555566655 49999999999982 1467999999999999999999999999997668999999
Q ss_pred cHHHHHHHhcCCCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEe
Q psy10795 145 PAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWI 224 (412)
Q Consensus 145 p~~k~~ai~~l~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~ 224 (412)
|+.+++||++++||...||+|.|+++||+.+...|+..+.+.+. .| ..|. .++... +.+.++|++|+
T Consensus 1010 Pe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdl---rG-------~~~~--~wnlr~-psG~pVLVafv 1076 (1713)
T PLN02976 1010 PDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDL---RG-------QCFM--FWNVKK-TVGAPVLIALV 1076 (1713)
T ss_pred cHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCC---Cc-------eEEE--eccCCC-CCCCCEEEEEe
Confidence 99999999999999999999999999999765566544322211 11 1111 222222 23446899999
Q ss_pred cccchHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCC
Q psy10795 225 AGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPR 304 (412)
Q Consensus 225 ~g~~a~~~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~ 304 (412)
.|..|..+..++++++++.+++.|+++||. ...+.|..+.+++|..|||++|+|++..||+.
T Consensus 1077 ~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~-~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~----------------- 1138 (1713)
T PLN02976 1077 VGKAAIDGQSMSSSDHVNHALMVLRKLFGE-ALVPDPVASVVTDWGRDPFSYGAYSYVAIGAS----------------- 1138 (1713)
T ss_pred ccHhHHHHhhCCHHHHHHHHHHHHHHHcCc-ccccCcceeEEecCCCCCCcCccccCCCCCCC-----------------
Confidence 999999999999999999999999999994 24578999999999999999999999876641
Q ss_pred CCCccccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcc---
Q psy10795 305 APLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREG--- 381 (412)
Q Consensus 305 ~p~~~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~--- 381 (412)
...+..|++|+++ +||||||||+..|+||||||++||+|||++|+..|...+
T Consensus 1139 --------------------~~d~d~LAePVgg-----RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~~~ 1193 (1713)
T PLN02976 1139 --------------------GEDYDILGRPVEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDYT 1193 (1713)
T ss_pred --------------------chHHHHHhCCCCC-----cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 1356789999973 799999999999999999999999999999999997653
Q ss_pred hhhHHHHhHHhhhhhcCceecceee
Q psy10795 382 FFEKLVNIAVKELEHKGNQVGRILN 406 (412)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
+..+....+....+...+.|..++|
T Consensus 1194 ~~~~~~~~~~~~~~~~~~e~~~~~~ 1218 (1713)
T PLN02976 1194 AEVEALETAQRHSESERDEVRDITK 1218 (1713)
T ss_pred cHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 3355556666666666666655554
No 4
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.4e-39 Score=334.19 Aligned_cols=266 Identities=27% Similarity=0.386 Sum_probs=206.6
Q ss_pred eccCCcceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcC----cccccCCCc
Q psy10795 70 MDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSK----LITFVPSLP 145 (412)
Q Consensus 70 ~v~~~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~----~i~f~P~Lp 145 (412)
.+.+....|..+++..++ ++.|+||++|++|++ .+++|+|++.+|+++.||+||+|+|+++|++. .|.|.|+||
T Consensus 236 ~i~gG~~~Li~~La~~L~-~~~I~ln~~V~~I~~-~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP 313 (539)
T PLN02568 236 TIAKGYLSVIEALASVLP-PGTIQLGRKVTRIEW-QDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLP 313 (539)
T ss_pred EECCcHHHHHHHHHhhCC-CCEEEeCCeEEEEEE-eCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCC
Confidence 343433345555666553 457999999999999 88899999999989999999999999999964 258999999
Q ss_pred HHHHHHHhcCCCcceeEEEEEcCCCccCCC-----CCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEE
Q psy10795 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDG-----CQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTL 220 (412)
Q Consensus 146 ~~k~~ai~~l~~g~~~KV~l~f~~~fW~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL 220 (412)
+.|++||++++||.+.||++.|+++||... ...+.+++.+.+.. ..+. ....|...++++++...++.+|
T Consensus 314 ~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~vL 388 (539)
T PLN02568 314 DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSE-ARHD----KIPWWMRRTASICPIHKNSSVL 388 (539)
T ss_pred HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchh-hhcc----cccchhhccccccccCCCCCEE
Confidence 999999999999999999999999998641 22233333322110 0000 0224655555555444456799
Q ss_pred EEEecccchHHHhcCCHHHHHHHHHHHHHHHhCCCCC--------------------CCCCcEEEeecCCCCCCCccccC
Q psy10795 221 LGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYI--------------------IPEPIRIVRSAWSINPHFRGSYS 280 (412)
Q Consensus 221 ~~~~~g~~a~~~~~lsdeel~~~~l~~L~~~~g~~~~--------------------~~~~~~~~~~~W~~dp~~~G~ys 280 (412)
++|++|+.|.+++.++++++++.+++.|+++||.... .+.|..+..++|.+|||++|+|+
T Consensus 389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 9999999999999999999999999999999984211 24689999999999999999999
Q ss_pred CCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcchHHhccccccC-------CCCceEEEecccccC
Q psy10795 281 HHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINR-------EGRPVLLFAGEATSP 353 (412)
Q Consensus 281 ~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~-------~~~~~l~fAGe~t~~ 353 (412)
+..||+. ..+++.|++|+.+. ...++||||||||+.
T Consensus 469 ~~~~g~~-------------------------------------~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~ 511 (539)
T PLN02568 469 YVAVGSS-------------------------------------GDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHR 511 (539)
T ss_pred CCcCCCC-------------------------------------hhHHHHHhCccccccccccccCCCccEEEeecccCC
Confidence 8866531 13567999998510 112389999999999
Q ss_pred cCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 354 HHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 354 ~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.|+||||||++||+|||++|++.++.
T Consensus 512 ~~~~Tv~GA~~SG~RaA~~i~~~~~~ 537 (539)
T PLN02568 512 THYSTTHGAYFSGLREANRLLQHYKC 537 (539)
T ss_pred CccchHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998653
No 5
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.5e-39 Score=330.49 Aligned_cols=231 Identities=31% Similarity=0.509 Sum_probs=192.2
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEcCC
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f~~ 169 (412)
++|+||++|++|++ ++++|+|++.+|++++||+||||+|+++|++..|.|+|+||+.++++|++++||...||++.|++
T Consensus 245 ~~I~l~~~V~~I~~-~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~ 323 (487)
T PLN02676 245 PRLKLNKVVREISY-SKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPY 323 (487)
T ss_pred CceecCCEeeEEEE-cCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCC
Confidence 57999999999999 88899999999999999999999999999987789999999999999999999999999999999
Q ss_pred CccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHHHHH
Q psy10795 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFR 249 (412)
Q Consensus 170 ~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~~L~ 249 (412)
+||+++.....++..+.+. +. ...|.. ++ ...++.++|++|+.|+.+.++..++++++.+.+++.|+
T Consensus 324 ~FW~~~~~~~~~~~~~~~~----~~-----~~~~~~--~~--~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~ 390 (487)
T PLN02676 324 KFWPSGPGTEFFLYAHERR----GY-----YPFWQH--LE--NEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLR 390 (487)
T ss_pred CCCCCCCCceeeeeecccc----cc-----chhhhh--cc--cCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998742222222222110 00 112321 11 11123358889999999999999999999999999999
Q ss_pred HHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcchH
Q psy10795 250 HFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAA 329 (412)
Q Consensus 250 ~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 329 (412)
++||. .++.|..+..++|.+|||++|+|+++.||+. ....+
T Consensus 391 ~~~g~--~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~-------------------------------------~~~~~ 431 (487)
T PLN02676 391 KMFGP--NIPEATDILVPRWWSNRFFKGSYSNWPIGVS-------------------------------------RYEFD 431 (487)
T ss_pred HHhCC--CCCCcceEEecccCCCCCCCcccCCCCCCCC-------------------------------------hhHHH
Confidence 99985 5678999999999999999999999866641 13467
Q ss_pred HhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 330 DLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 330 ~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.|++|++ |||||||||+..|+||||||++||+|||++|++.++.
T Consensus 432 ~L~~P~g------ri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 432 QIRAPVG------RVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred HHhCCCC------ceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 8999995 9999999999999999999999999999999998765
No 6
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.2e-37 Score=329.28 Aligned_cols=251 Identities=27% Similarity=0.405 Sum_probs=203.9
Q ss_pred eccCCcceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHH
Q psy10795 70 MDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKL 149 (412)
Q Consensus 70 ~v~~~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~ 149 (412)
.+.+....|..+++..+ .|+||++|++|.+ .+++|.| +.+|+++.||+||||+|+++|++..|.|.|+||+.++
T Consensus 431 ~v~GG~~~Li~aLa~~L----~I~ln~~V~~I~~-~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~ 504 (808)
T PLN02328 431 FIPGGNDTFVRELAKDL----PIFYERTVESIRY-GVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKK 504 (808)
T ss_pred EECCcHHHHHHHHHhhC----CcccCCeeEEEEE-cCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHH
Confidence 34344445666666665 3999999999999 8888988 4577899999999999999999777899999999999
Q ss_pred HHHhcCCCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccch
Q psy10795 150 NAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTA 229 (412)
Q Consensus 150 ~ai~~l~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a 229 (412)
++|++++|+++.||+|.|+++||+.+...++++..+... .|. ..+. +++.... +..+|++|++|+.+
T Consensus 505 ~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~---rG~------~~lf---~s~s~~~-G~~vLvafv~G~~A 571 (808)
T PLN02328 505 DAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSM---RGE------FFLF---YSYSSVS-GGPLLIALVAGDAA 571 (808)
T ss_pred HHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCC---Cce------EEEE---ecCCCCC-CCcEEEEEecChhh
Confidence 999999999999999999999998766667766443221 121 0111 1222222 34689999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCc
Q psy10795 230 RYMETLPMAVLQADIMRLFRHFLGGA-YIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLC 308 (412)
Q Consensus 230 ~~~~~lsdeel~~~~l~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~ 308 (412)
..+..++++++++.++++|+++|+.. ...+.|..+.+++|.+|||++|+|+++.||++
T Consensus 572 ~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~--------------------- 630 (808)
T PLN02328 572 VKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSS--------------------- 630 (808)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCc---------------------
Confidence 99999999999999999999999731 13568999999999999999999999977642
Q ss_pred cccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 309 RRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
..+++.|++|+.+ +|||||||||+..++||||||++||+|||++|+..++.+
T Consensus 631 ----------------~~~~~~LaePv~~----GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 631 ----------------GDDYDILAESVGD----GRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred ----------------hhHHHHHhccCCC----CCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 1346788999742 499999999999999999999999999999999998876
No 7
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=2.7e-37 Score=325.22 Aligned_cols=243 Identities=30% Similarity=0.490 Sum_probs=196.1
Q ss_pred ceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcC
Q psy10795 76 LTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGL 155 (412)
Q Consensus 76 ~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l 155 (412)
..+..+++..+ .|+||++|++|++ ++++|+|++. ++++.||+||||+|+++|++..|.|.|+||+.|++||+++
T Consensus 357 ~~Li~aLA~~L----~IrLnt~V~~I~~-~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL 430 (738)
T PLN02529 357 WRLINALCEGV----PIFYGKTVDTIKY-GNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL 430 (738)
T ss_pred HHHHHHHHhcC----CEEcCCceeEEEE-cCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence 34555566654 5999999999999 8889999864 4589999999999999999766899999999999999999
Q ss_pred CCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcC
Q psy10795 156 NFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETL 235 (412)
Q Consensus 156 ~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~l 235 (412)
+|+++.||+|.|+++||+.+...++++..+... .+ .|.. .++....+++ .+|++|++|+.|..+..+
T Consensus 431 ~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~---~g--------~~~~-~~~~~~~~gg-pvLvafv~G~~A~~le~l 497 (738)
T PLN02529 431 GFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK---RG--------EFFL-FYGYHTVSGG-PALVALVAGEAAQRFENT 497 (738)
T ss_pred CCceeEEEEEEeCCccccCCCCceEEEeccCCC---Cc--------eEEE-EecCCCCCCC-CEEEEEECchhhHHHhcC
Confidence 999999999999999998765566655322211 01 1211 1122222223 589999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCC-CCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccC
Q psy10795 236 PMAVLQADIMRLFRHFLGGA-YIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQP 314 (412)
Q Consensus 236 sdeel~~~~l~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 314 (412)
+++++++.++++|+++||.. ..++.|..+.+++|.+|||++|+|+++.|++
T Consensus 498 sdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~---------------------------- 549 (738)
T PLN02529 498 DPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQS---------------------------- 549 (738)
T ss_pred CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCC----------------------------
Confidence 99999999999999999731 2356889999999999999999999986553
Q ss_pred CCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 315 TSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 315 ~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.+ ..+..|++|+. +|||||||||+..|+||||||++||+|||++|++.++.
T Consensus 550 ~~---------~d~~~La~pv~-----grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 550 SG---------SDYDILAESVS-----GRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred ch---------hHHHHHhCCCC-----CCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 11 23567888874 39999999999999999999999999999999998865
No 8
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=7.8e-36 Score=303.15 Aligned_cols=224 Identities=31% Similarity=0.428 Sum_probs=187.8
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEcCC
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f~~ 169 (412)
.+|++|++|++|.+ .+++|.|++.+|+++.||+||+|+|+++|++..|.|.|+||+.++++|++++|+++.||++.|++
T Consensus 211 ~~i~~~~~V~~i~~-~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~ 289 (435)
T PLN02268 211 LDIRLNHRVTKIVR-RYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDS 289 (435)
T ss_pred CceeCCCeeEEEEE-cCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCC
Confidence 36999999999999 88899999999988999999999999999876678999999999999999999999999999999
Q ss_pred CccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHHHHH
Q psy10795 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFR 249 (412)
Q Consensus 170 ~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~~L~ 249 (412)
+||++. ..++.+. +... ...|.. +..+ ..+..+|++|++|+.+..+..++++++++.++++|+
T Consensus 290 ~fw~~~-~~~g~~~-~~~~-----------~~~~~~---~~~~-~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~ 352 (435)
T PLN02268 290 VFWPNV-EFLGVVA-PTSY-----------GCSYFL---NLHK-ATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLK 352 (435)
T ss_pred CCCCCC-ceeeccC-CCCC-----------CceEEE---eccc-CCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999753 2333331 1100 112222 1112 234468889999999999999999999999999999
Q ss_pred HHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcchH
Q psy10795 250 HFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAA 329 (412)
Q Consensus 250 ~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 329 (412)
++||. .+.|..+.+++|.+|||++|+|+++.||+. ...++
T Consensus 353 ~~~~~---~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~-------------------------------------~~~~~ 392 (435)
T PLN02268 353 KMLPD---ATEPVQYLVSRWGSDPNSLGCYSYDLVGKP-------------------------------------HDLYE 392 (435)
T ss_pred HHcCC---CCCccEEEecccCCCCCCCccCCCCCCCCC-------------------------------------HHHHH
Confidence 99984 457899999999999999999999977641 13467
Q ss_pred HhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHH
Q psy10795 330 DLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377 (412)
Q Consensus 330 ~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l 377 (412)
.|++|++ |||||||+|+..++||||||++||+|||++|++.|
T Consensus 393 ~l~~p~~------~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 393 RLRAPVD------NLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred HHhCCCC------CeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 8999986 89999999999999999999999999999999764
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=275.54 Aligned_cols=236 Identities=26% Similarity=0.411 Sum_probs=189.5
Q ss_pred eeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCC
Q psy10795 77 TLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLN 156 (412)
Q Consensus 77 vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~ 156 (412)
+|-.+++.-| +..|.++.+|.+|.+ ++++|+|++.+..++.+|+||||+|+.+|.+ |.|.|++|+..+++++.+.
T Consensus 210 ~la~Afa~ql--~~~I~~~~~V~rI~q-~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~ 284 (450)
T COG1231 210 QLAEAFAKQL--GTRILLNEPVRRIDQ-DGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVP 284 (450)
T ss_pred HHHHHHHHHh--hceEEecCceeeEEE-cCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcC
Confidence 3444445544 788999999999999 9999999999956999999999999999999 8999999999999999999
Q ss_pred CcceeEEEEEcCCCccCCCC--CceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEE-EecccchHHHh
Q psy10795 157 FGTVDKIFIRFPAKWWKDGC--QGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLG-WIAGPTARYME 233 (412)
Q Consensus 157 ~g~~~KV~l~f~~~fW~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~-~~~g~~a~~~~ 233 (412)
|++++|+.+.|++|||++.. .|..+ +|..+. ..+|.+ ....+++++|.+ |+.|+.|..+.
T Consensus 285 y~~~~K~~v~f~rpFWee~~~l~G~~~--tD~~~~----------~i~~~s-----~~~~~G~gVl~g~~~~g~~A~~~~ 347 (450)
T COG1231 285 YGSATKIGVAFSRPFWEEAGILGGESL--TDLGLG----------FISYPS-----APFADGPGVLLGSYAFGDDALVID 347 (450)
T ss_pred cchheeeeeecCchhhhhcccCCceEe--ecCCcc----------eEecCc-----cccCCCceEEEeeeeccccceeEe
Confidence 99999999999999999753 33322 333210 111211 111245677776 77799999999
Q ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccc
Q psy10795 234 TLPMAVLQADIMRLFRHFLGGAYIIPEPIRI-VRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSY 312 (412)
Q Consensus 234 ~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~-~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~ 312 (412)
.++++++++.++..+.++||. +...+.+. ...+|++|||+.|+|.++.|||.
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~--~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~------------------------- 400 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGD--EAADPFDYGASVDWSKDPWTLGGTAAYPPGQR------------------------- 400 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCCh--hhccccccceeeecccCCcCCccccccCCccc-------------------------
Confidence 999999999999999999995 33455554 89999999999998888877762
Q ss_pred cCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 313 QPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.++.+.+..|.+ ||||||++++..+.||||||++||.+||.+|+..+..
T Consensus 401 ------------~~~~~~l~~p~g------RIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 401 ------------TKLYPTLPAPHG------RIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred ------------ccccccccCCCC------ceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 134567778875 9999995555558899999999999999999988753
No 10
>KOG0029|consensus
Probab=100.00 E-value=2.1e-32 Score=278.35 Aligned_cols=237 Identities=32% Similarity=0.500 Sum_probs=195.4
Q ss_pred cCCcCCCCCCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcc
Q psy10795 81 SGQTPVDLSNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGT 159 (412)
Q Consensus 81 ~~~~~~~~~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~ 159 (412)
+++.++ +|+|+++|..|.+ .+++ +.+++.+++.+.+|+||+|+|+++|+...|.|.|+||..|.++|+++++|.
T Consensus 224 ~la~~l----~I~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~ 298 (501)
T KOG0029|consen 224 SLAEGL----DIHLNKRVRKIKY-GDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGL 298 (501)
T ss_pred hcCCCc----ceeeceeeEEEEE-ecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCc
Confidence 344554 6999999999999 5544 556666666699999999999999999989999999999999999999999
Q ss_pred eeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHH
Q psy10795 160 VDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAV 239 (412)
Q Consensus 160 ~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdee 239 (412)
+.||+|.|++.||+.+...|+.+ +.+. ...+...++++.+.... .+|+.++.|..++.+..+++++
T Consensus 299 ~~Kv~l~F~~~fW~~~~d~fg~~-~~~~------------~~~~~~~f~~~~~~~~~-~~l~~~~~~~~a~~~~~~~~~~ 364 (501)
T KOG0029|consen 299 VNKVILEFPRVFWDQDIDFFGIV-PETS------------VLRGLFTFYDCKPVAGH-PVLMSVVVGEAAERVETLSDSE 364 (501)
T ss_pred eeEEEEEeccccCCCCcCeEEEc-cccc------------cccchhhhhhcCccCCC-CeEEEEehhhhhHHHhcCCHHH
Confidence 99999999999998665566554 2221 11121112333333333 4889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccC
Q psy10795 240 LQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRN 319 (412)
Q Consensus 240 l~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 319 (412)
+++.++..|+++|+. .+++.|.+..+++|..|+++.|+|++..++- .+
T Consensus 365 ~~~~~~~~l~k~f~~-~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~----------------------------~~--- 412 (501)
T KOG0029|consen 365 IVKKAMKLLRKVFGS-EEVPDPLDALVTRWGTDPLSGGSYSYVAVGS----------------------------DG--- 412 (501)
T ss_pred HHHHHHHHHHHHhcc-CcCCCccceeeeeecccccCCccccccCCCC----------------------------Ch---
Confidence 999999999999993 4688999999999999999999999995431 11
Q ss_pred CCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 320 GSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 320 ~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
..++.+++|+.+ +||||||+|+..++||||||+.||.|||..|+..+..
T Consensus 413 ------~~y~~l~~pi~~-----~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 413 ------DDYDRLAEPIKN-----RVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ------hHHHHHhccccC-----cEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 347889999974 7999999999999999999999999999999999885
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.96 E-value=2.6e-29 Score=252.21 Aligned_cols=226 Identities=30% Similarity=0.471 Sum_probs=183.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEcC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFP 168 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f~ 168 (412)
+.+|++|++|++|+. ++++|.|++.+|++++||+||+|+|++.+.+ |.|.|++|..+.+++++++|.+..||+|.|+
T Consensus 223 g~~i~l~~~V~~I~~-~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~ 299 (450)
T PF01593_consen 223 GGEIRLNTPVTRIER-EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFD 299 (450)
T ss_dssp GGGEESSEEEEEEEE-ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEES
T ss_pred CceeecCCcceeccc-cccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeee
Confidence 568999999999999 8899999999999999999999999999998 7899999999999999999999999999999
Q ss_pred CCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecC--CCCcEEEEEecccchHHHhcCCHHHHHHHHHH
Q psy10795 169 AKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDA--EDPLTLLGWIAGPTARYMETLPMAVLQADIMR 246 (412)
Q Consensus 169 ~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~--~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~ 246 (412)
++||+.+...+++++++.. .+...+.+....+ .+..+++.|+.++.+..+..++++++++.+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~ 365 (450)
T PF01593_consen 300 RPFWPPDIDFFGILYSDGF--------------SPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLD 365 (450)
T ss_dssp SGGGGSTTTESEEEEESST--------------SSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccceecccCc--------------cccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHH
Confidence 9999985334445544331 0111111111111 23468889999888889999999999999999
Q ss_pred HHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCc
Q psy10795 247 LFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNT 326 (412)
Q Consensus 247 ~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~ 326 (412)
+|+++++. ...++|..+.+++|.++++.+|+|++..+++. ..
T Consensus 366 ~L~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-------------------------------------~~ 407 (450)
T PF01593_consen 366 DLRKILPG-ASIPDPIDITVTRWSRDPYPRGSYSYFPPGQS-------------------------------------SQ 407 (450)
T ss_dssp HHHHHHTT-GGGGEESEEEEEECTTSTTTSSSCECHCTTHH-------------------------------------HH
T ss_pred Hhhhcccc-cccccccccccccccccccccccccccccccc-------------------------------------cc
Confidence 99999994 23567889999999999999999998855431 13
Q ss_pred chHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHH
Q psy10795 327 SAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374 (412)
Q Consensus 327 ~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~ 374 (412)
.++.+..|+. ++|||||||++..+.|+|+||+.||++||++||
T Consensus 408 ~~~~~~~~~~-----~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 408 FRPALRTPID-----PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HHHHHHSCBT-----TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcc-----eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 5678889984 389999999999888999999999999999996
No 12
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.87 E-value=3.3e-21 Score=194.26 Aligned_cols=208 Identities=18% Similarity=0.210 Sum_probs=147.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe-CCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEc
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC-SDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRF 167 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~-~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f 167 (412)
+.+|++|++|++|.. ++++|++.. .+|+++.||+||+|+|+.++.+. .|. +.+.++++++.|+++.||+|.|
T Consensus 211 g~~i~~~~~V~~i~~-~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~l----l~~--~~~~~~l~~~~~~~~~~v~l~~ 283 (419)
T TIGR03467 211 GGEVRLGTRVRSIEA-NAGGIRALVLSGGETLPADAVVLAVPPRHAASL----LPG--EDLGALLTALGYSPITTVHLRL 283 (419)
T ss_pred CCEEEcCCeeeEEEE-cCCcceEEEecCCccccCCEEEEcCCHHHHHHh----CCC--chHHHHHhhcCCcceEEEEEEe
Confidence 678999999999999 777776544 46778999999999999999982 232 2466789999999999999999
Q ss_pred CCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHHH
Q psy10795 168 PAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRL 247 (412)
Q Consensus 168 ~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~~ 247 (412)
++++|... +.++++ .. ...|... ....++.+.++..++.+ +..+..++++++++.++++
T Consensus 284 ~~~~~~~~-~~~~~~--~~-------------~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~ 342 (419)
T TIGR03467 284 DRAVRLPA-PMVGLV--GG-------------LAQWLFD---RGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAE 342 (419)
T ss_pred CCCcCCCC-Ceeeec--CC-------------ceeEEEE---CCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHH
Confidence 99998542 233222 11 1223321 11112233456666554 5667889999999999999
Q ss_pred HHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcc
Q psy10795 248 FRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTS 327 (412)
Q Consensus 248 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 327 (412)
|+++||.. ....+....+.+|.. +.|++. ||.. ..
T Consensus 343 l~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~-~g~~--------------------------------------~~ 377 (419)
T TIGR03467 343 LRRAFPRV-AGAKPLWARVIKEKR-----ATFAAT-PGLN--------------------------------------RL 377 (419)
T ss_pred HHHhcCcc-ccCCccceEEEEccC-----CccccC-Cccc--------------------------------------cc
Confidence 99999852 123455566677764 333332 2210 11
Q ss_pred hHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHH
Q psy10795 328 AADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375 (412)
Q Consensus 328 ~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~ 375 (412)
.+.+..|.+ +||||||+|+..++++||||++||.+||++|++
T Consensus 378 ~~~~~~~~~------~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 378 RPGARTPWP------NLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCCCCCcC------CEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 233456664 899999999998889999999999999999863
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.87 E-value=4.5e-21 Score=196.33 Aligned_cols=224 Identities=14% Similarity=0.262 Sum_probs=164.5
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEcCC
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPA 169 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f~~ 169 (412)
++|++|++|++|.+ .+++|+|++.+|+++.||+||+|+|++++.. +.|++|+.+.++++++.|+++.+|.+.|++
T Consensus 238 ~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~ 312 (462)
T TIGR00562 238 TKVYKGTKVTKLSH-RGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPVANVNLGFPE 312 (462)
T ss_pred CeEEcCCeEEEEEe-cCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCceEEEEEEEch
Confidence 57999999999999 8888999998888899999999999999987 347788889999999999999999999999
Q ss_pred CccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHHHHH
Q psy10795 170 KWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFR 249 (412)
Q Consensus 170 ~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~~L~ 249 (412)
++|.....+++++.++.+...+. ...|.+..+.... +.+..+|++|++|..+..+.+++++++++.++++|+
T Consensus 313 ~~~~~~~~~~g~l~~~~~~~~~~-------~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~ 384 (462)
T TIGR00562 313 GSVDGELEGFGFLISRSSKFAIL-------GCIFTSKLFPNRA-PPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLK 384 (462)
T ss_pred HHcCCCCCceEEEccCCCCCceE-------EEEEEccccCCcC-CCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHH
Confidence 99976556676664433211011 1122222222111 233457889998888888889999999999999999
Q ss_pred HHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCccCcchH
Q psy10795 250 HFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAA 329 (412)
Q Consensus 250 ~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 329 (412)
++++. . ..|....+++|.. +|..+.+|.. +.+....+
T Consensus 385 ~~~gi--~-~~p~~~~v~rw~~------a~P~~~~g~~----------------------------------~~~~~i~~ 421 (462)
T TIGR00562 385 KVLNI--N-NEPEMLCVTRWHR------AIPQYHVGHD----------------------------------QRLKEARE 421 (462)
T ss_pred HHhCC--C-CCCcEEEEeEccc------cCCCCCCChH----------------------------------HHHHHHHH
Confidence 99984 2 2488889999983 3443322210 01111111
Q ss_pred HhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 330 DLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 330 ~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
.+..+. ++|++||+++.. ..|++|+.||.++|++|++.+.
T Consensus 422 ~l~~~~------~~l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 422 LLESAY------PGVFLTGNSFEG---VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHhhC------CCEEEeccccCC---CcHHHHHHHHHHHHHHHHHhhc
Confidence 222332 489999999875 4699999999999999988763
No 14
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.86 E-value=6.7e-21 Score=194.65 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=150.4
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCc-----EEEeCEEEEeCChhhhhcCcccccCCCc-HHHHHHHhcCCCccee
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGS-----VYTAYKIIITVPLGVLKSKLITFVPSLP-AQKLNAIEGLNFGTVD 161 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~-----~~~ad~VIvTvP~~~L~~~~i~f~P~Lp-~~k~~ai~~l~~g~~~ 161 (412)
+++|++|++|++|...+++.| .|++.+|+ ++.||+||+|+|++.+.+. +.+.++ ....+.++++.++++.
T Consensus 227 g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l---L~~~~~~~~~~~~~~~~~~~~~~ 303 (453)
T TIGR02731 227 GGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL---LPQPWKQMPFFQKLNGLEGVPVI 303 (453)
T ss_pred CCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh---CchhhhcCHHHHHhhcCCCCcEE
Confidence 678999999999986233334 46665554 7899999999999998872 222222 2345667778899999
Q ss_pred EEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHH
Q psy10795 162 KIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQ 241 (412)
Q Consensus 162 KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~ 241 (412)
||.+.|++++|... ++.+ +..+.. + ....|....+++.. + +. .++++..+. +..+..++++|++
T Consensus 304 ~v~l~~~~~~~~~~--~~~~--~~~~~~---~-----~~~~~s~~~~~~~~-~-~~-~l~~~~~~~-~~~~~~~~~ee~~ 367 (453)
T TIGR02731 304 NVHIWFDRKLTTVD--HLLF--SRSPLL---S-----VYADMSETCKEYAD-P-DK-SMLELVFAP-AADWIGRSDEEII 367 (453)
T ss_pred EEEEEEccccCCCC--ceee--eCCCcc---e-----eecchhhhChhhcC-C-CC-eEEEEEecC-hhhhhcCCHHHHH
Confidence 99999999987542 3322 222110 0 01122222222222 2 23 444444443 4567889999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCC
Q psy10795 242 ADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGS 321 (412)
Q Consensus 242 ~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~ 321 (412)
+.++++|+++||.......+.++..++|.++||+. |. ..||+.
T Consensus 368 ~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~~---------------------------------- 410 (453)
T TIGR02731 368 DATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPGRQ---------------------------------- 410 (453)
T ss_pred HHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec-cCCCCh----------------------------------
Confidence 99999999999841112256778889999999984 42 334321
Q ss_pred CccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHH
Q psy10795 322 DRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANA 373 (412)
Q Consensus 322 ~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i 373 (412)
...+.+++|++ +|||||++++..|+|+||||++||.+||++|
T Consensus 411 ----~~~~~~~~p~~------~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 411 ----QYRPHQKTPIP------NFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ----hhCccccCccC------CEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 23456778875 8999999999999999999999999999987
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.86 E-value=9e-21 Score=195.91 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=163.7
Q ss_pred eeeecCCcCCCCC-CcEEcCCeEEEEEecCCCc-EEEEe--CCCc-EEEeCEEEEeCChhhhhcCcccccCCCcHHHHHH
Q psy10795 77 TLLVSGQTPVDLS-NKILYKKEVNKIDWEYQNG-AAVSC--SDGS-VYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151 (412)
Q Consensus 77 vl~~~~~~~~~~~-~~I~ln~~V~~I~~~~~~~-V~V~~--~~G~-~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~a 151 (412)
.|..+++..+ + ++|++|++|++|++ .+++ |.|++ .+|+ +++||+||+|+|+.++... . +++++...++
T Consensus 240 ~L~~~la~~l--~~~~i~l~~~V~~I~~-~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~l--l--~~~~~~~~~~ 312 (496)
T PLN02576 240 TLPDALAKRL--GKDKVKLNWKVLSLSK-NDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEM--L--RPKSPAAADA 312 (496)
T ss_pred HHHHHHHHhh--CcCcEEcCCEEEEEEE-CCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHH--h--cccCHHHHHH
Confidence 4555666555 4 67999999999999 6665 66654 3553 6999999999999999983 2 3355667889
Q ss_pred HhcCCCcceeEEEEEcCCCccCC------CCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEec
Q psy10795 152 IEGLNFGTVDKIFIRFPAKWWKD------GCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIA 225 (412)
Q Consensus 152 i~~l~~g~~~KV~l~f~~~fW~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~ 225 (412)
++++.|.++.+|.+.|++++|.. ...+++++++..+..... ...|.+.+++.. .+++..++++|++
T Consensus 313 l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~l-------g~~~~s~~~p~~-~~~~~~~l~~~~~ 384 (496)
T PLN02576 313 LPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTL-------GTIYSSSLFPDR-APEGRVLLLNYIG 384 (496)
T ss_pred hccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceE-------EEEeecCcCCCC-CCCCCEEEEEEEC
Confidence 99999999999999999999976 334565543221100000 112222222211 1233456778999
Q ss_pred ccchHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCC
Q psy10795 226 GPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRA 305 (412)
Q Consensus 226 g~~a~~~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~ 305 (412)
+..+..+.+++++++++.++++|++++|. ...+.|....+++|.. ++..+.+|..
T Consensus 385 ~~~~~~~~~~s~ee~~~~~~~~L~~~~g~-~~~~~p~~~~~~~w~~------a~P~~~~g~~------------------ 439 (496)
T PLN02576 385 GSRNTGIASASEEELVEAVDRDLRKLLLK-PGAPPPKVVGVRVWPK------AIPQYLLGHL------------------ 439 (496)
T ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhCC-CCCCCCcEEEEeEcCc------ccCCCCcCHH------------------
Confidence 88888999999999999999999999984 2234677778899973 2333322210
Q ss_pred CCccccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 306 PLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 306 p~~~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
...+.+.+.+.+ ...++|+||||++.. .+|+||++||.++|++|+..+.
T Consensus 440 --------------------~~~~~~~~~l~~-~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 440 --------------------DVLEAAEKMEKD-LGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred --------------------HHHHHHHHHHHh-cCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 112223332221 001489999999986 4799999999999999998765
No 16
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.86 E-value=7.9e-21 Score=194.65 Aligned_cols=233 Identities=11% Similarity=0.138 Sum_probs=162.9
Q ss_pred eeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCC
Q psy10795 77 TLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLN 156 (412)
Q Consensus 77 vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~ 156 (412)
.|..++++.+. ..+|++|++|++|++ .+++|.|++.+|+++.||+||+|+|+.++.+ +.+.|++++ .++++.
T Consensus 227 ~l~~~l~~~l~-~~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~~----~~~~~~ 298 (463)
T PRK12416 227 TIIDRLEEVLT-ETVVKKGAVTTAVSK-QGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELNE----QFHTFK 298 (463)
T ss_pred HHHHHHHHhcc-cccEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchhH----HHhcCC
Confidence 45556665552 247999999999999 7888999998888899999999999999988 566666553 567888
Q ss_pred CcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEE-Eec--ccchHHHh
Q psy10795 157 FGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLG-WIA--GPTARYME 233 (412)
Q Consensus 157 ~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~-~~~--g~~a~~~~ 233 (412)
+.++.+|++.|++++|..+..+++++.++.+... .+...|.+..+... .++. .+|+. |+. ++.++.+.
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~-------~~~~~~~s~~~~~~-~~~~-~~l~~~~~~~~~~~~~~~~ 369 (463)
T PRK12416 299 NSSLISIYLGFDILDEQLPADGTGFIVTENSDLH-------CDACTWTSRKWKHT-SGKQ-KLLVRMFYKSTNPVYETIK 369 (463)
T ss_pred CCceEEEEEEechhhcCCCCCceEEEeeCCCCCe-------EEEEEeecCCCCCc-CCCC-eEEEEEEeCCCCCCchhhh
Confidence 9999999999998877544456776644332110 01223443333221 1223 34544 554 46778889
Q ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCcccccc
Q psy10795 234 TLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQ 313 (412)
Q Consensus 234 ~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 313 (412)
.++++|+.+.++++|+++||. ...|....+++|.+ ++..+
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~---~~~p~~~~v~~W~~------a~P~y------------------------------- 409 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGI---KGEPEVVEVTNWKD------LMPKY------------------------------- 409 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCC---CCCceEEEEEEccc------cCCCc-------------------------------
Confidence 999999999999999999995 34788999999984 11111
Q ss_pred CCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 314 PTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 314 ~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
.+|| ...+....+.+..+. ++|||||+++++. +|+||+.||+++|++|++.++
T Consensus 410 ~~~~---~~~~~~~~~~l~~~~------~~l~~aG~~~~g~---~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 410 HLEH---NQAVQSLQEKMMNLY------PNIYLAGASYYGV---GIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CcCH---HHHHHHHHHHHHhhC------CCeEEeccccccc---cHHHHHHHHHHHHHHHHHHhh
Confidence 1221 001111122333333 4899999998874 599999999999999998764
No 17
>PLN02612 phytoene desaturase
Probab=99.83 E-value=1.1e-19 Score=189.92 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=146.9
Q ss_pred CCcEEcCCeEEEEEecCCCc--EEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEE
Q psy10795 89 SNKILYKKEVNKIDWEYQNG--AAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIR 166 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~--V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~ 166 (412)
|++|++|++|++|.. ++++ +.|++.+|+++.||+||+|+|+.+++.++.... .+....+.++++.+.++.+|+|.
T Consensus 322 G~~I~l~~~V~~I~~-~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v~~v~l~ 398 (567)
T PLN02612 322 GGEVRLNSRIKKIEL-NDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPVINVHIW 398 (567)
T ss_pred CCEEEeCCeeeEEEE-CCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCeEEEEEE
Confidence 789999999999998 5555 347777898999999999999999987321111 11233445667889999999999
Q ss_pred cCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcCCHHHHHHHHHH
Q psy10795 167 FPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMR 246 (412)
Q Consensus 167 f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~l~ 246 (412)
|++++|... ... +....+...+ ...+....+.+. +++..++.+.+ + .++++..++++++++.+++
T Consensus 399 ~dr~~~~~~-~~~--~~~~~~~~~~--------~~d~S~~~~~~~--~~~~~ll~~~~-~-~a~~~~~~sdeei~e~vl~ 463 (567)
T PLN02612 399 FDRKLKNTY-DHL--LFSRSPLLSV--------YADMSTTCKEYY--DPNKSMLELVF-A-PAEEWISRSDEDIIDATMK 463 (567)
T ss_pred ECcccCCCC-Cce--eecCCCCcee--------ehhhhhcchhhc--CCCCeEEEEEE-E-cChhhhcCCHHHHHHHHHH
Confidence 999998642 222 2122211000 000111111111 22334444433 3 5678889999999999999
Q ss_pred HHHHHhCCCCCCCC--CcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCcc
Q psy10795 247 LFRHFLGGAYIIPE--PIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRL 324 (412)
Q Consensus 247 ~L~~~~g~~~~~~~--~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~ 324 (412)
+|+++||.. ..++ ...+....+...|++. |.+. |+..
T Consensus 464 ~L~~lfp~~-~~~~~~~~~i~~~~~v~~P~a~--~~~~-pg~~------------------------------------- 502 (567)
T PLN02612 464 ELAKLFPDE-ISADQSKAKILKYHVVKTPRSV--YKTV-PNCE------------------------------------- 502 (567)
T ss_pred HHHHHCCcc-cccccCCceEEEEEEeccCCce--EEeC-CCCc-------------------------------------
Confidence 999999952 1122 1233344445555532 4332 3210
Q ss_pred CcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 325 NTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 325 ~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.+++.++.|+. +||||||+|+..|+++||||++||++||++|++.+..
T Consensus 503 -~~rp~~~tPi~------~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 503 -PCRPLQRSPIE------GFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred -ccCccccCccC------CEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 12234566774 8999999999999999999999999999999988643
No 18
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.81 E-value=5.4e-19 Score=180.20 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=152.3
Q ss_pred eeeecCCcCCCCCC-cEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcC
Q psy10795 77 TLLVSGQTPVDLSN-KILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGL 155 (412)
Q Consensus 77 vl~~~~~~~~~~~~-~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l 155 (412)
.+..++...+ +. +|++|++|++|+. .+++|.|++.+|+++.||+||+|+|++++.+. .+ | +...++++++
T Consensus 222 ~l~~~l~~~l--~~~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~-~---~~~~~~~~~~ 292 (451)
T PRK11883 222 SLIEALEEKL--PAGTIHKGTPVTKIDK-SGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FV-A---PPAFALFKTI 292 (451)
T ss_pred HHHHHHHHhC--cCCeEEeCCEEEEEEE-cCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--cc-C---hhHHHHHhCC
Confidence 3444444444 23 7999999999998 77889999999999999999999999999983 22 2 2356788999
Q ss_pred CCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHHHhcC
Q psy10795 156 NFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETL 235 (412)
Q Consensus 156 ~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~l 235 (412)
.|+++.||++.|+++++.. ..+++++....+...+. ...|.+..++.. .+.+..++..+.++..+..+..+
T Consensus 293 ~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~-~p~g~~~~~~~~~~~~~~~~~~~ 363 (451)
T PRK11883 293 PSTSVATVALAFPESATNL-PDGTGFLVARNSDYTIT-------ACTWTSKKWPHT-TPEGKVLLRLYVGRPGDEAVVDA 363 (451)
T ss_pred CCCceEEEEEEeccccCCC-CCceEEEecCCCCCcEE-------EEEeEcCcCCCC-CCCCcEEEEEecCCCCCchhccC
Confidence 9999999999999997322 22344432311100000 111222111111 12233344444444444556788
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCC
Q psy10795 236 PMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPT 315 (412)
Q Consensus 236 sdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 315 (412)
+++++++.++++|++++|. ...|....+++|.. +|+.+.||..
T Consensus 364 ~~~~~~~~~~~~L~~~~g~---~~~~~~~~~~rw~~------a~p~~~~~~~---------------------------- 406 (451)
T PRK11883 364 TDEELVAFVLADLSKVMGI---TGDPEFTIVQRWKE------AMPQYGVGHI---------------------------- 406 (451)
T ss_pred CHHHHHHHHHHHHHHHhCC---CCCceEEEEeecCc------cCCCCCccHH----------------------------
Confidence 9999999999999999984 23677889999984 3555533310
Q ss_pred CccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHH
Q psy10795 316 SLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375 (412)
Q Consensus 316 g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~ 375 (412)
.....+..++.. .++|||||+++.+ +.|++|++||+++|++|++
T Consensus 407 ----------~~~~~l~~~l~~---~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 407 ----------ERVAELRAGLPH---YPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred ----------HHHHHHHHhhhh---CCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 112334444421 2389999999864 4699999999999999975
No 19
>PRK07233 hypothetical protein; Provisional
Probab=99.74 E-value=9.9e-17 Score=162.56 Aligned_cols=230 Identities=14% Similarity=0.129 Sum_probs=146.5
Q ss_pred eeecCCcCCC-CCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCC
Q psy10795 78 LLVSGQTPVD-LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLN 156 (412)
Q Consensus 78 l~~~~~~~~~-~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~ 156 (412)
+..++.+.+. .+.+|++|++|++|+. +++++.+.+.+|++++||+||+|+|+..+.+. .|++++...++++++.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~-~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~l----l~~~~~~~~~~~~~~~ 274 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVI-DGGGVTGVEVDGEEEDFDAVISTAPPPILARL----VPDLPADVLARLRRID 274 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEE-cCCceEEEEeCCceEECCEEEECCCHHHHHhh----cCCCcHHHHhhhcccC
Confidence 4444444333 3678999999999998 77778766667779999999999999999872 2667777788899999
Q ss_pred CcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEE--EEEecccchHHHhc
Q psy10795 157 FGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTL--LGWIAGPTARYMET 234 (412)
Q Consensus 157 ~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL--~~~~~g~~a~~~~~ 234 (412)
|.+..++++.|+++.++ .+.....+++. .+.+ ..+.+.... ...+++..++ .+|+.+.. .+..
T Consensus 275 ~~~~~~~~l~~~~~~~~----~~~~~~~~~~~-~~~~-------~~~~s~~~~-~~~~~g~~~~~~~~~~~~~~--~~~~ 339 (434)
T PRK07233 275 YQGVVCMVLKLRRPLTD----YYWLNINDPGA-PFGG-------VIEHTNLVP-PERYGGEHLVYLPKYLPGDH--PLWQ 339 (434)
T ss_pred ccceEEEEEEecCCCCC----CceeeecCCCC-Ccce-------EEEecccCC-ccccCCceEEEEeeecCCCC--hhhc
Confidence 99999999999998532 11111111110 0000 001110000 0111222332 34555443 3668
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccC
Q psy10795 235 LPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQP 314 (412)
Q Consensus 235 lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 314 (412)
++++++++.++++|++++|. .....+... +|.+.+++.+. +.||..
T Consensus 340 ~~~~~~~~~~~~~L~~~~p~-~~~~~~~~~---~~~r~~~a~~~---~~~g~~--------------------------- 385 (434)
T PRK07233 340 MSDEELLDRFLSYLRKMFPD-FDRDDVRAV---RISRAPYAQPI---YEPGYL--------------------------- 385 (434)
T ss_pred CCHHHHHHHHHHHHHHhCCC-CChhheeeE---EEEEecccccc---ccCchh---------------------------
Confidence 89999999999999999983 111233444 44444454332 222210
Q ss_pred CCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 315 TSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 315 ~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
...+.+.+|+. +|||||+++...+.++|+||++||.+||++|++.++
T Consensus 386 -----------~~~~~~~~~~~------~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 386 -----------DKIPPYDTPIE------GLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred -----------hcCCCcccCcC------CEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 11233455653 899999955554556899999999999999998875
No 20
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.74 E-value=4.7e-18 Score=155.11 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=155.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC-cEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEEc
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG-SVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRF 167 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G-~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~f 167 (412)
..+|+++++|++|.+ .++.|+|++++| +...+|.||+|+|.+++..++-.-.-.+|...++++..+.|.||+.+.|.|
T Consensus 117 dL~V~~~~rVt~v~~-~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~ 195 (331)
T COG3380 117 DLTVVLETRVTEVAR-TDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGY 195 (331)
T ss_pred cchhhhhhhhhhhee-cCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcC
Confidence 347999999999999 799999999776 467999999999999998732111236888899999999999999999999
Q ss_pred CCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeec---CCCCcEEEEEecccchHHHhcCCHHHHHHHH
Q psy10795 168 PAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMD---AEDPLTLLGWIAGPTARYMETLPMAVLQADI 244 (412)
Q Consensus 168 ~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~---~~~~~vL~~~~~g~~a~~~~~lsdeel~~~~ 244 (412)
.++--.. .++ .++ + |. +..|.. .+.++. +.+ .+++...+.++++.+.+.++|+.+..+
T Consensus 196 ~q~l~~P-~~G-~~v--d-------g~-----~laWla--~d~sK~g~~p~~-~~~vvqasp~wSr~h~~~~~e~~i~~l 256 (331)
T COG3380 196 PQPLDRP-WPG-NFV--D-------GH-----PLAWLA--RDASKKGHVPDG-EIWVVQASPDWSREHLDHPAEQVIVAL 256 (331)
T ss_pred CccCCCC-CCC-ccc--C-------CC-----eeeeee--ccccCCCCCCcC-ceEEEEeCchHHHHhhcCCHHHHHHHH
Confidence 9764111 122 122 2 21 346765 332232 223 367888889999999999999999888
Q ss_pred HHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCcc
Q psy10795 245 MRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRL 324 (412)
Q Consensus 245 l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~ 324 (412)
......+++. .+++|.-...|+|. |+.+ .+ +.+
T Consensus 257 ~aA~~~~~~~--~~~~p~~s~~H~Wr--------YA~P--~~---------------------------~~~-------- 289 (331)
T COG3380 257 RAAAQELDGD--RLPEPDWSDAHRWR--------YAIP--ND---------------------------AVA-------- 289 (331)
T ss_pred HHhhhhccCC--CCCcchHHHhhccc--------cccc--cc---------------------------ccc--------
Confidence 8888888874 46788888899997 4443 22 110
Q ss_pred CcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHH
Q psy10795 325 NTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377 (412)
Q Consensus 325 ~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l 377 (412)
.....+.+- .+||++||+|++ |.+|||++||..+|++|++.|
T Consensus 290 --~~~L~ad~~------~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 290 --GPPLDADRE------LPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred --CCccccCCC------CceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 000111222 279999999999 889999999999999998764
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.63 E-value=1.1e-14 Score=151.22 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=141.1
Q ss_pred CCCcEEcCCeEEEEEecC-CCc---E-EEEe---CCCcEEEeCEEEEeCChhhhhcCcccccCCCcH--HHHHHHhcCCC
Q psy10795 88 LSNKILYKKEVNKIDWEY-QNG---A-AVSC---SDGSVYTAYKIIITVPLGVLKSKLITFVPSLPA--QKLNAIEGLNF 157 (412)
Q Consensus 88 ~~~~I~ln~~V~~I~~~~-~~~---V-~V~~---~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~--~k~~ai~~l~~ 157 (412)
.|++|+++++|++|..+. +++ | .|++ .+++++.+|+||+|+|+..+++. .|..+. ...+.+.++.+
T Consensus 308 ~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L----lp~~~~~~~~~~~l~~L~~ 383 (569)
T PLN02487 308 RGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL----LPEQWREYEFFDNIYKLVG 383 (569)
T ss_pred cCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh----CCchhhccHHHhHHhcCCC
Confidence 488999999999999831 233 2 3455 33457899999999999999873 344322 23567888989
Q ss_pred cceeEEEEEcCCCccCCCCCceeEeecCCCccccccccc--cCCCCCccc--cc-----cceeecCCCCcEEEEEecccc
Q psy10795 158 GTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMV--HVDGKPWVW--GI-----LGFYMDAEDPLTLLGWIAGPT 228 (412)
Q Consensus 158 g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~w~~--~~-----~~~~~~~~~~~vL~~~~~g~~ 228 (412)
.+++.|.|.|+++.=... .... +..+..+.|... ......|.. .+ -+++. .....+|.+++..
T Consensus 384 ~pi~tv~L~~d~~v~~~~--~~~~---~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~-~~~g~~l~~vis~-- 455 (569)
T PLN02487 384 VPVVTVQLRYNGWVTEMQ--DLEL---SRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYK-EGEGSLIQAVLTP-- 455 (569)
T ss_pred eeEEEEEEEecccccccc--cccc---cccccccccccccccccCCCcceEeeeecCCHHHHcc-cCCceEEEEEEcC--
Confidence 999999999998652211 0000 000000000000 000112322 00 00111 1123567777775
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCc
Q psy10795 229 ARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLC 308 (412)
Q Consensus 229 a~~~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~ 308 (412)
++.+..++++++++.++++|+++||.. ....+..+.+.+..+ ..|.. .||+.
T Consensus 456 a~~~~~~~~~ei~~~~~~~L~~~~p~~-~~~~v~~~~vv~~~~-----at~~~-~pg~~--------------------- 507 (569)
T PLN02487 456 GDPYMPLSNDKIVEKVHKQVLELFPSS-RGLEVTWSSVVKIGQ-----SLYRE-APGMD--------------------- 507 (569)
T ss_pred CccccCCCHHHHHHHHHHHHHHhCccc-ccCceEEEEEEEccC-----ceecc-CCCcc---------------------
Confidence 356889999999999999999999852 112344544555443 33333 24421
Q ss_pred cccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHH
Q psy10795 309 RRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377 (412)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l 377 (412)
..++..+.|+. +||+|||+|+..|+.+||||++||.+||+.|++..
T Consensus 508 -----------------~~RP~~~T~~~------nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 508 -----------------PFRPDQKTPIS------NFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred -----------------ccCCCCCCCCC------CEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 11223345653 89999999999999999999999999999998765
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.63 E-value=6.9e-15 Score=150.95 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=133.7
Q ss_pred CCcEEcCCeEEEEEecCC--Cc---E-EEEeCCC---cEEEeCEEEEeCChhhhhcCcccccCCCc--HHHHHHHhcCCC
Q psy10795 89 SNKILYKKEVNKIDWEYQ--NG---A-AVSCSDG---SVYTAYKIIITVPLGVLKSKLITFVPSLP--AQKLNAIEGLNF 157 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~--~~---V-~V~~~~G---~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp--~~k~~ai~~l~~ 157 (412)
|++|+++++|++|.. ++ ++ | .|.+.+| +++.||+||+|+|...+++. .|+++ ....+.+..+.+
T Consensus 233 Gg~i~~~~~V~~I~~-~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L----l~~~~~~~~~~~~l~~l~~ 307 (474)
T TIGR02732 233 GGKFHLRHKVREIKY-EKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL----LPQEWRQFEEFDNIYKLDA 307 (474)
T ss_pred CCEEECCCEEEEEEE-ecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh----CChhhhcCHHHhhHhcCCC
Confidence 789999999999987 43 22 3 2334433 56899999999999999983 23332 135667889999
Q ss_pred cceeEEEEEcCCCccCCCC-CceeEeecCCCccccccccccCCCCCccc--c-----ccceeecCCCCcEEEEEecccch
Q psy10795 158 GTVDKIFIRFPAKWWKDGC-QGFNFYWTQQDKMDLFKDMVHVDGKPWVW--G-----ILGFYMDAEDPLTLLGWIAGPTA 229 (412)
Q Consensus 158 g~~~KV~l~f~~~fW~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~w~~--~-----~~~~~~~~~~~~vL~~~~~g~~a 229 (412)
.++..|.|.|+++.=.... .....+ ... ..+..- .......|.. . .-++.. +....+|.+++.. +
T Consensus 308 ~pi~~v~l~~~~~v~~~~~~~~~~~l-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~ 380 (474)
T TIGR02732 308 VPVATVQLRYDGWVTELQDLAKRKQL-KRA--AGLDNL-LYTADADFSCFADLALTSPDDYYK-EGQGSLLQCVLTP--G 380 (474)
T ss_pred CCeEEEEEEeccccccccchhhhhcc-ccc--cccccc-ccccCccceeeehhhccCHHHHhc-cCCCeEEEEEEeC--h
Confidence 9999999999975421110 000000 000 000000 0000112221 0 001111 2223446666654 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCcc
Q psy10795 230 RYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCR 309 (412)
Q Consensus 230 ~~~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~ 309 (412)
..+..++++++++.++++|+++||. .....+....+.+..+ ..|+. .||.. .+
T Consensus 381 ~~~~~~~~~~l~~~~~~~L~~~~p~-~~~~~~~~~~v~~~~~-----a~~~~-~pg~~-----------~~--------- 433 (474)
T TIGR02732 381 DPWMPESNEEIAKRVDKQVRALFPS-SKNLKLTWSSVVKLAQ-----SLYRE-APGMD-----------PF--------- 433 (474)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCcc-ccCCceeEEEEEEecC-----ceecc-CCCCc-----------cc---------
Confidence 4677899999999999999999984 2222344444444332 22222 23321 11
Q ss_pred ccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHH
Q psy10795 310 RSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374 (412)
Q Consensus 310 ~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~ 374 (412)
++....|+ ++||+|||+|+..|+.+||||++||++||+.|+
T Consensus 434 ------------------~P~~~t~~------~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 434 ------------------RPDQKTPI------SNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ------------------CCCCCCCC------CCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 11223444 489999999999999999999999999999874
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.54 E-value=6.3e-14 Score=140.34 Aligned_cols=237 Identities=16% Similarity=0.159 Sum_probs=168.5
Q ss_pred eEeccCCcceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHH
Q psy10795 68 FYMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQ 147 (412)
Q Consensus 68 f~~v~~~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~ 147 (412)
|........+|+.++.+.+ ..+|+++++|+.|.. +..++++.+.+|..++||.||+|+|++.|... + ++ ..
T Consensus 207 ~~~~~gG~~~l~~al~~~l--~~~i~~~~~V~~i~~-~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~l---l-~~--~~ 277 (444)
T COG1232 207 FGYLRGGLQSLIEALAEKL--EAKIRTGTEVTKIDK-KGAGKTIVDVGGEKITADGVISTAPLPELARL---L-GD--EA 277 (444)
T ss_pred ccccCccHHHHHHHHHHHh--hhceeecceeeEEEE-cCCccEEEEcCCceEEcceEEEcCCHHHHHHH---c-CC--cc
Confidence 3334444457777887777 455999999999999 77788888999989999999999999999982 3 33 23
Q ss_pred HHHHHhcCCCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEeccc
Q psy10795 148 KLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGP 227 (412)
Q Consensus 148 k~~ai~~l~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~ 227 (412)
...++.++.+.+...|.+.|+++--.....+++++..+++.. +. ...|.+..+++.. +.+..++.+++.+.
T Consensus 278 ~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~-~~-------a~~~~S~~~p~~~-p~g~~ll~~~~~~~ 348 (444)
T COG1232 278 VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY-IL-------AITFHSNKWPHEA-PEGKTLLRVEFGGP 348 (444)
T ss_pred hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCc-ce-------eEEEecccCCCCC-CCCcEEEEEEeecC
Confidence 456889999999999999999862222234555555665431 11 3567766554432 33445777888877
Q ss_pred chHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCC
Q psy10795 228 TARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPL 307 (412)
Q Consensus 228 ~a~~~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~ 307 (412)
.-+....++|||+++.++++|.++++. ..+|....++||.. ++..+
T Consensus 349 g~~~~~~~~dee~~~~~l~~L~~~~~~---~~~~~~~~v~r~~~------~~PqY------------------------- 394 (444)
T COG1232 349 GDESVSTMSDEELVAAVLDDLKKLGGI---NGDPVFVEVTRWKY------AMPQY------------------------- 394 (444)
T ss_pred CCcchhccCHHHHHHHHHHHHHHHcCc---Ccchhheeeeeccc------cCCcc-------------------------
Confidence 777788899999999999999999985 34666888889973 34433
Q ss_pred ccccccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHH
Q psy10795 308 CRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374 (412)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~ 374 (412)
.+|| . +....++..+.. ..|+|+.+|-+.... .+.+++.+|..||++++
T Consensus 395 ------~vG~---~----~~~~~ir~~l~~--~y~gi~~~G~~~~g~---g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 395 ------EVGH---L----DRLEPIRAALKG--AYPGIKSVGRYGEGV---GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred ------chhH---H----HHHHHHHHhhcc--ccCCeEEeccCCCCC---CchHHHHHHHHHHHHhh
Confidence 3442 1 223334443320 115899999988772 48999999999999886
No 24
>PRK07208 hypothetical protein; Provisional
Probab=99.53 E-value=2.5e-13 Score=139.86 Aligned_cols=297 Identities=14% Similarity=0.121 Sum_probs=170.3
Q ss_pred CCccccceEEEEcCCCCccCCCcceEeeeccCCccccc-cccccc-CC----------CCceeeeeeeEeccCCcceeee
Q psy10795 13 LNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLF-KDMVHV-DG----------KPWVWGILGFYMDAEDPLTLLV 80 (412)
Q Consensus 13 lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~~d~~~l~-~~~~~~-~~----------~~W~~~i~gf~~v~~~p~vl~~ 80 (412)
+|=...++++..|.+..|..++..+.+.|.-....... ...+.+ .. .........|.........|..
T Consensus 143 ~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~ 222 (479)
T PRK07208 143 FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWE 222 (479)
T ss_pred hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHH
Confidence 34444667777888888888888888777554432100 000000 00 0000000112111112223444
Q ss_pred cCCcCCC-CCCcEEcCCeEEEEEecCCCcE-E-EEe--CCCc--EEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHh
Q psy10795 81 SGQTPVD-LSNKILYKKEVNKIDWEYQNGA-A-VSC--SDGS--VYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIE 153 (412)
Q Consensus 81 ~~~~~~~-~~~~I~ln~~V~~I~~~~~~~V-~-V~~--~~G~--~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~ 153 (412)
++.+.+. .+.+|++|++|++|.. +++++ . ++. .+|+ ++.||+||+|+|+..+.+. +.|++|+.+.++++
T Consensus 223 ~L~~~l~~~g~~i~~~~~V~~I~~-~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~ 298 (479)
T PRK07208 223 TAAEKLEALGGKVVLNAKVVGLHH-DGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA---LDPPPPPEVRAAAA 298 (479)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEE-cCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHh
Confidence 4444332 2678999999999998 66653 2 332 3453 5889999999999999873 45678888888999
Q ss_pred cCCCcceeEEEEEcCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCC-cEEE-EEecccchHH
Q psy10795 154 GLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDP-LTLL-GWIAGPTARY 231 (412)
Q Consensus 154 ~l~~g~~~KV~l~f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~-~vL~-~~~~g~~a~~ 231 (412)
++.|.++.+|.+.|+++.+... ...++ ++.+. ..+.. .....|... ..+.+. ..+. .+.... ...
T Consensus 299 ~l~~~~~~~v~l~~~~~~~~~~--~~~~~-~~~~~--~~~r~--~~~~~~~~~-----~~p~g~~~~l~~~~~~~~-~~~ 365 (479)
T PRK07208 299 GLRYRDFITVGLLVKELNLFPD--NWIYI-HDPDV--KVGRL--QNFNNWSPY-----LVPDGRDTWLGLEYFCFE-GDD 365 (479)
T ss_pred CCCcceeEEEEEEecCCCCCCC--ceEEe-cCCCC--cccee--cccccCCcc-----cCCCCCceEEEEEEEccC-CCc
Confidence 9999999999999998854321 11122 22111 01110 001122211 112222 2222 333222 234
Q ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCcccc
Q psy10795 232 METLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRS 311 (412)
Q Consensus 232 ~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~ 311 (412)
++.++|+++++.++++|.++... ....+....+.+|. .+|..+.
T Consensus 366 ~~~~~deel~~~~~~~L~~l~~~--~~~~~~~~~v~r~~------~a~P~y~---------------------------- 409 (479)
T PRK07208 366 LWNMSDEDLIALAIQELARLGLI--RPADVEDGFVVRVP------KAYPVYD---------------------------- 409 (479)
T ss_pred cccCCHHHHHHHHHHHHHHcCCC--ChhheeEEEEEEec------CcccCCC----------------------------
Confidence 67899999999999999997321 13356677777775 2344332
Q ss_pred ccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHH
Q psy10795 312 YQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVY 376 (412)
Q Consensus 312 ~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~ 376 (412)
.|| .+.+... ..+.++. ++|+|||++....+ .+|++|+.||.++|++|++.
T Consensus 410 ---~~~---~~~~~~~-~~~~~~~------~~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 410 ---GTY---ERNVEII-RDLLDHF------PNLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred ---chH---HHHHHHH-HHHHHhc------CCceeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 221 0011011 1122344 48999999876655 68999999999999998876
No 25
>KOG0685|consensus
Probab=99.51 E-value=8e-15 Score=143.90 Aligned_cols=73 Identities=30% Similarity=0.560 Sum_probs=65.8
Q ss_pred hhhHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeeccCCcccccccccccCCCCceeeeeeeEeccCCcceeee
Q psy10795 3 QIALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLV 80 (412)
Q Consensus 3 ~~~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~~d~~~l~~~~~~~~~~~W~~~i~gf~~v~~~p~vl~~ 80 (412)
+-.|++||++|||||||||||||++|||+.+|.+|+++|.+++..++... ...|.+++++|+++...|++|..
T Consensus 300 P~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~-----~~~w~~~~~~f~~v~~~~~vL~g 372 (498)
T KOG0685|consen 300 PAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRST-----LDAWEEDIMGFQPVSWAPNVLLG 372 (498)
T ss_pred CHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhh-----hHHHHhhceEEEEcCcchhhhhe
Confidence 45899999999999999999999999999999999999999997776553 46799999999999999987753
No 26
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.95 E-value=1.5e-08 Score=104.88 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=68.5
Q ss_pred CCcceeeecCCcCCC-CCCcEEcCCeEEEEEecCCCcE-EEEeCCC-----cEEEeCEEEEeCChhhhhcCcccccCCCc
Q psy10795 73 EDPLTLLVSGQTPVD-LSNKILYKKEVNKIDWEYQNGA-AVSCSDG-----SVYTAYKIIITVPLGVLKSKLITFVPSLP 145 (412)
Q Consensus 73 ~~p~vl~~~~~~~~~-~~~~I~ln~~V~~I~~~~~~~V-~V~~~~G-----~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp 145 (412)
+....|..++++.+. .+++|++|++|++|.. +++++ .|.+.+| +++.||+||+|+|+..+.+ +...|.+|
T Consensus 229 GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~--ll~~~~~~ 305 (492)
T TIGR02733 229 GSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE--LLGPLGLP 305 (492)
T ss_pred CcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH--hcCcccCC
Confidence 333456556655443 3789999999999998 55542 2333333 5789999999999999987 23346778
Q ss_pred HHHHHHHhcCCCcc-eeEEEEEcCCC
Q psy10795 146 AQKLNAIEGLNFGT-VDKIFIRFPAK 170 (412)
Q Consensus 146 ~~k~~ai~~l~~g~-~~KV~l~f~~~ 170 (412)
+...+.++++.+.+ ..++++.+++.
T Consensus 306 ~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 306 PGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred HHHHHHHhcCCCCCceEEEEEeeccc
Confidence 77777788888877 45889999873
No 27
>KOG1276|consensus
Probab=98.70 E-value=1.7e-07 Score=91.56 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=145.2
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeC--CCcE-EEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEE
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCS--DGSV-YTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIR 166 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~--~G~~-~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~ 166 (412)
..|.++.+|..|.....++|.+++. ++++ ...+++..|+|..++.+. .|++.+....++.++.|-++.-|.+.
T Consensus 264 v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~l----l~~~~~sls~~L~ei~y~~V~vVn~~ 339 (491)
T KOG1276|consen 264 VSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKL----LRGLQNSLSNALSEIPYVPVAVVNTY 339 (491)
T ss_pred hhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhh----ccccchhhhhhhhcCCCCceEEEEEe
Confidence 3578888888888745566776654 4543 467778889999999983 56677778889999999999999999
Q ss_pred cCCCccCCCCCceeEeecCCCccccccccccCCCCCccccccceeecCCCCcEEEEEecccchHH--HhcCCHHHHHHHH
Q psy10795 167 FPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARY--METLPMAVLQADI 244 (412)
Q Consensus 167 f~~~fW~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~vL~~~~~g~~a~~--~~~lsdeel~~~~ 244 (412)
|.++--.-+..||+++.+.+... + .++-+..+.+.+|+... .+..++..++|.+... +...+.||+++.+
T Consensus 340 yp~~~~~~pl~GFG~LvPs~~~~---~--~~~LG~ifdS~~Fp~~~---~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v 411 (491)
T KOG1276|consen 340 YPKEKIDLPLQGFGLLVPSEPKN---G--FKTLGTIFDSMLFPDRS---PSPKVTVMMGGGGSTNTSLAVPSPEELVNAV 411 (491)
T ss_pred ccCcccccccccceeeccCCCCC---C--CceeEEEeecccCCCCC---CCceEEEEecccccccCcCCCCCHHHHHHHH
Confidence 99863223467899886632211 0 01112344444443221 2225666665555442 3456899999999
Q ss_pred HHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCccccccCCCccCCCCcc
Q psy10795 245 MRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRL 324 (412)
Q Consensus 245 l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~ 324 (412)
.++|+++++. -..|....++-|.+ +.|- + .+|| .+.+
T Consensus 412 ~~alq~~Lgi---~~~P~~~~v~l~~~----------ciPq----------------------y-----~vGh---~~~l 448 (491)
T KOG1276|consen 412 TSALQKMLGI---SNKPVSVNVHLWKN----------CIPQ----------------------Y-----TVGH---DDVL 448 (491)
T ss_pred HHHHHHHhCC---CCCcccccceehhh----------cccc----------------------e-----ecch---HHHH
Confidence 9999999995 22576666666764 2221 1 4664 2222
Q ss_pred CcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHH
Q psy10795 325 NTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374 (412)
Q Consensus 325 ~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~ 374 (412)
+....-+...-+ .+|+.+|.|+.+.. +..+++||.++|.+++
T Consensus 449 e~a~~~l~~~~g-----~~l~l~G~~y~Gv~---vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 449 EAAKSMLTDSPG-----LGLFLGGNHYGGVS---VGDCIESGRKTAVEVI 490 (491)
T ss_pred HHHHHHHHhCCC-----CceEeeccccCCCC---hhHHHHhhHHHHHhhc
Confidence 222222322221 37999999999843 8889999999998875
No 28
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.65 E-value=4e-07 Score=94.50 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=56.3
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCC-cHHHHHHHhcCCC-cceeEEEE
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSL-PAQKLNAIEGLNF-GTVDKIFI 165 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~L-p~~k~~ai~~l~~-g~~~KV~l 165 (412)
|.+|+++++|++|.. ++++ +.|++.+|+++.||+||+|+|+..+...+ ..+.+ |....+.++++.+ .+..++++
T Consensus 233 G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~s~~~~~l 309 (502)
T TIGR02734 233 GGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHTYRRL--LPNHPRRRYPAARLSRKRPSPSLFVLYF 309 (502)
T ss_pred CCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHHHHHh--cCccccccccccccccCCcCCeeeEEEE
Confidence 779999999999998 5555 57888899899999999999997766522 22333 2233345566654 45778888
Q ss_pred EcC
Q psy10795 166 RFP 168 (412)
Q Consensus 166 ~f~ 168 (412)
.++
T Consensus 310 gl~ 312 (502)
T TIGR02734 310 GLL 312 (502)
T ss_pred eec
Confidence 988
No 29
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.59 E-value=2e-06 Score=89.03 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCChh-hhhcCcccccCCCcHHHHHHHhcCCCc-ceeEEEE
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVPLG-VLKSKLITFVPSLPAQKLNAIEGLNFG-TVDKIFI 165 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP~~-~L~~~~i~f~P~Lp~~k~~ai~~l~~g-~~~KV~l 165 (412)
|.+|+++++|++|.. ++++ +.|.+.+|++++||+||+++.+. .+.++ + =...+|......++++.++ +..++++
T Consensus 243 G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L-l-~~~~~~~~~~~~~~~~~~s~s~~~~~l 319 (493)
T TIGR02730 243 GGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKL-L-KAENLPKKEKNWQRNYVKSPSFLSLHL 319 (493)
T ss_pred CCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHh-C-CccccchhhHHHHhhccCCCceEEEEE
Confidence 789999999999998 5554 46778889889999999988654 44442 1 0112343333444555554 4888999
Q ss_pred EcCCC
Q psy10795 166 RFPAK 170 (412)
Q Consensus 166 ~f~~~ 170 (412)
..+..
T Consensus 320 ~l~~~ 324 (493)
T TIGR02730 320 GVKAD 324 (493)
T ss_pred EecCc
Confidence 99874
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=5.8e-05 Score=76.30 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=120.6
Q ss_pred CCcEEcCCeEEEEEecCCCc-----EEEEeCCCcE---EEeCEEEEeCChhhhhcCcccccCC-Cc-HHHHHHHhcCCCc
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-----AAVSCSDGSV---YTAYKIIITVPLGVLKSKLITFVPS-LP-AQKLNAIEGLNFG 158 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-----V~V~~~~G~~---~~ad~VIvTvP~~~L~~~~i~f~P~-Lp-~~k~~ai~~l~~g 158 (412)
+.+++.+.+|+.|.. +... +.+... +.. ..++.++.+.....++.. .|. .+ ...-.-|..+..-
T Consensus 229 G~~v~~~~pv~~l~l-~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~----~ps~W~~~~~f~~ly~l~~~ 302 (485)
T COG3349 229 GRKVHADYPVKELDL-DGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRD----LPSEWPKWSNFDGLYGLRLV 302 (485)
T ss_pred Cceeeccceeeeeec-cccccccceEeeeec-CcceEeeehhhhhcccccchHhhc----Cccccccccccccccccccc
Confidence 678999999999998 4311 223222 433 345666666666666552 221 11 1223456677889
Q ss_pred ceeEEEEEcCCCccCCCC--Ccee---EeecCCCccccccccccCCCCCccccc--cceeecCCCCcEEEEEecccchHH
Q psy10795 159 TVDKIFIRFPAKWWKDGC--QGFN---FYWTQQDKMDLFKDMVHVDGKPWVWGI--LGFYMDAEDPLTLLGWIAGPTARY 231 (412)
Q Consensus 159 ~~~KV~l~f~~~fW~~~~--~~~~---~~~~~~~~~~~~g~~~~~~~~~w~~~~--~~~~~~~~~~~vL~~~~~g~~a~~ 231 (412)
+.+++.+.|+..-|..+. ..+. .+|++.++. | ..|.... ..+.+ ++..+.|...+. .+..
T Consensus 303 p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~---~-------~~ad~~~~~~~y~e-~g~~~~le~~~~--~~~~ 369 (485)
T COG3349 303 PVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLG---G-------VVADLALTSPDYVE-PGAGCYLEKVLA--PGWP 369 (485)
T ss_pred ceeEEEEeecCccccccccchhhhhhccccccccCC---c-------eeeeccccchhhcc-ccchhhhhhhhc--cccc
Confidence 999999999964332221 1010 113333321 1 1111100 01111 111122332222 2334
Q ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCCCcEEEeecCCCCCCCccccCCCCCccccccccCcccccCCCCCCCCCcccc
Q psy10795 232 METLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRS 311 (412)
Q Consensus 232 ~~~lsdeel~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~pg~~~~~~~~~~~~~~~~~~~~p~~~~~ 311 (412)
+...+++++.....+.+..++|...+ ......+.+ + -++.| ...||-.
T Consensus 370 ~~~~~~~~~~a~~e~~~~~~vP~~~~--a~~~~~~i~--~---~q~~~-~~~pgs~------------------------ 417 (485)
T COG3349 370 FLFESDEAIVATFEKELYELVPSLAE--AKLKSSVLV--N---QQSLY-GLAPGSY------------------------ 417 (485)
T ss_pred ccccchhhHHHHHHHHhhhcCCchhc--cccccccee--c---ccccc-ccCCCcc------------------------
Confidence 56678899999999999988874211 111111110 0 01111 1122210
Q ss_pred ccCCCccCCCCccCcchHHhccccccCCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 312 YQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 312 ~~~~g~~~~~~~~~~~~~~l~~p~~~~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
.+++....|+. |+++|||++-..+.++||||..||++||+.|++.+...
T Consensus 418 --------------~~rP~~~Tpv~------N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 418 --------------HYRPEQKTPIP------NLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHH 466 (485)
T ss_pred --------------ccCCCCCCCcc------chhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhc
Confidence 12333455654 89999999999899999999999999999999887643
No 31
>PLN02568 polyamine oxidase
Probab=97.13 E-value=0.0005 Score=71.87 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=34.0
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccC-----CCcceEeeeccCC
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKD-----GCQGFNLYWTQQD 45 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~-----~~~~~~~~W~~~d 45 (412)
.|.+||++|+||+++||||+|.+|||.. .+..+.++|...+
T Consensus 315 ~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~ 360 (539)
T PLN02568 315 FKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSD 360 (539)
T ss_pred HHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccc
Confidence 5789999999999999999999999964 3455677777544
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.00 E-value=0.0015 Score=62.96 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=66.2
Q ss_pred cCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcce
Q psy10795 81 SGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTV 160 (412)
Q Consensus 81 ~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~ 160 (412)
.++.++ .++|.++++|.+|.+ -.++|.|+..+|++-.+|+||+++-+.+...+ ++.+-|++ ++++.++.|...
T Consensus 225 ~laa~~--~~~i~t~~~V~~l~r-lPdGv~l~~~~G~s~rFD~vViAth~dqAl~m---L~e~sp~e-~qll~a~~Ys~n 297 (447)
T COG2907 225 RLAADI--RGRIETRTPVCRLRR-LPDGVVLVNADGESRRFDAVVIATHPDQALAL---LDEPSPEE-RQLLGALRYSAN 297 (447)
T ss_pred HHhccc--cceeecCCceeeeee-CCCceEEecCCCCccccceeeeecChHHHHHh---cCCCCHHH-HHHHHhhhhhhc
Confidence 445566 678999999999999 89999999999999999999999999988873 33334554 559999999988
Q ss_pred eEEEEEcC
Q psy10795 161 DKIFIRFP 168 (412)
Q Consensus 161 ~KV~l~f~ 168 (412)
..|.....
T Consensus 298 ~aVlhtd~ 305 (447)
T COG2907 298 TAVLHTDA 305 (447)
T ss_pred eeEEeecc
Confidence 88777655
No 33
>PRK10015 oxidoreductase; Provisional
Probab=96.21 E-value=0.52 Score=47.99 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.1
Q ss_pred eEEEecccccCcCc-----ccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 343 VLLFAGEATSPHHY-----GTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 343 ~l~fAGe~t~~~~~-----g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
++.++||+-....+ .-|.-|+.||..||+.|++.+....
T Consensus 296 g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d 339 (429)
T PRK10015 296 GVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERAD 339 (429)
T ss_pred CeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999876432 3577799999999999999988644
No 34
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.02 E-value=0.17 Score=51.55 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+.+++|++|.. .++.+.+.+.+|.++.||.||.|.=..
T Consensus 122 Gv~i~~~~~V~~i~~-~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 122 GAQLITGIRVDNLVQ-RDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CCEEECCCEEEEEEE-eCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 678999999999987 666665445567789999999998543
No 35
>PLN02976 amine oxidase
Probab=95.83 E-value=0.0065 Score=68.85 Aligned_cols=41 Identities=27% Similarity=0.537 Sum_probs=35.7
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeeccCC
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQD 45 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~~d 45 (412)
.|..||++|+||+++||||+|.++||+.+...|...|++.+
T Consensus 1012 ~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtd 1052 (1713)
T PLN02976 1012 WKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETD 1052 (1713)
T ss_pred HHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCC
Confidence 57899999999999999999999999987777777776543
No 36
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.69 E-value=1.1 Score=44.38 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=38.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+++++++|++|.. ++++|+|++.+|+++.||.||.|-....
T Consensus 120 gv~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 120 NIQLYCPARYKEIIR-NQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred CcEEEcCCeEEEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 557999999999998 7888999998898999999999998753
No 37
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.26 E-value=0.029 Score=50.40 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+|++++.|++|++ .+++|.|++.+|++++||+||+|+-.
T Consensus 96 ~l~i~~~~~V~~v~~-~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRR-DGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEE-ETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEE-eccEEEEEEEecceeeeeeEEEeeec
Confidence 345999999999999 78889999999989999999999874
No 38
>PLN03000 amine oxidase
Probab=94.96 E-value=0.026 Score=61.64 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=35.8
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeeccC
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQ 44 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~~ 44 (412)
.|.+||++++||.++||++.|+++||..+...|..+|.+.
T Consensus 446 ~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~ 485 (881)
T PLN03000 446 RKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDP 485 (881)
T ss_pred HHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCC
Confidence 6899999999999999999999999988877788887654
No 39
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.93 E-value=1.4 Score=43.62 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=36.1
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
.+|+++++|++|.. .+++|.|++.+|+++.+|.||.|--..
T Consensus 122 ~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 122 VTLLCPARVVELPR-HSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred cEEecCCeEEEEEe-cCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 57999999999998 788899999999899999999886654
No 40
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.72 E-value=3.5 Score=41.40 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC-C--cEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD-G--SVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~-G--~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|.. +++++.|++.+ + .+++||.||.|-=..
T Consensus 136 ~v~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 136 NITWLCPAEVVSVEY-QQDAATVTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred CcEEEcCCeeEEEEe-cCCeeEEEEccCCcceEEeeeEEEEeCCCC
Confidence 457899999999998 77888888753 2 368999999886543
No 41
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.66 E-value=1.1 Score=44.63 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=35.0
Q ss_pred cEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 91 KILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 91 ~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
.+++++.|++|.. .+++|.|++.+|++++||.||.|--..
T Consensus 127 ~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 127 ITRFGDEAESVRP-REDEVTVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred cEEECCeeEEEEE-cCCeEEEEECCCCEEEEeEEEEecCCC
Confidence 3588999999998 888899999999899999999987654
No 42
>PLN02676 polyamine oxidase
Probab=94.13 E-value=0.052 Score=56.26 Aligned_cols=29 Identities=28% Similarity=0.614 Sum_probs=26.7
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCC
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDG 33 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~ 33 (412)
.|.++|+++++|.++|||++|++|||..+
T Consensus 301 ~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~ 329 (487)
T PLN02676 301 WKIEAIYQFDMAVYTKIFLKFPYKFWPSG 329 (487)
T ss_pred HHHHHHHhCCceeeEEEEEEeCCCCCCCC
Confidence 57899999999999999999999999663
No 43
>PLN02529 lysine-specific histone demethylase 1
Probab=93.52 E-value=0.078 Score=57.37 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=33.7
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeecc
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQ 43 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~ 43 (412)
.|..||++++||.++|++|.|+++||..+...+.++|..
T Consensus 422 ~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~ 460 (738)
T PLN02529 422 RKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNES 460 (738)
T ss_pred HHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEecc
Confidence 589999999999999999999999998766666667653
No 44
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=93.39 E-value=7.7 Score=38.58 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=37.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|.. .++++.|++.+|++++||.||.|--...
T Consensus 127 gv~i~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 127 NVTLRCPASLQALQR-DDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred CcEEEcCCeeEEEEE-cCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 457899999999998 7778999998998999999999977643
No 45
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.38 E-value=0.088 Score=57.41 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=33.9
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeec
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWT 42 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~ 42 (412)
.|.+||++++||.++|++|.|.++||..+...|.+++.
T Consensus 502 ~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~ 539 (808)
T PLN02328 502 RKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTE 539 (808)
T ss_pred HHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEee
Confidence 68999999999999999999999999877667777765
No 46
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.30 E-value=9.5 Score=37.96 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=37.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.++.|++|+. ++++++|++.+|++++||.||.|--...
T Consensus 125 ~i~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 125 NLTLMCPEKLADLEF-SAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred CeEEECCCceeEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 457999999999998 7888999999999999999999976643
No 47
>KOG0029|consensus
Probab=93.09 E-value=0.083 Score=54.72 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=26.3
Q ss_pred hhHHHHhhcCCccccceEEEEcCCCCcc
Q psy10795 4 IALGTLLQGLNFGTVDKIFIRFPAKWWK 31 (412)
Q Consensus 4 ~~~~~ai~~lgfgt~~Kifl~f~~~~w~ 31 (412)
..|.+||++||||.++||.++|++.||+
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~ 312 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWD 312 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCC
Confidence 4689999999999999999999999995
No 48
>KOG4254|consensus
Probab=92.74 E-value=5.3 Score=40.47 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEE-eCChhhhhcCcccccCCCcHHHHHHHhcCCC
Q psy10795 88 LSNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIII-TVPLGVLKSKLITFVPSLPAQKLNAIEGLNF 157 (412)
Q Consensus 88 ~~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIv-TvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~ 157 (412)
.|++|.++..|.+|.- +++. +-|...||+.+.+..||+ |+|...+.++ .=.-.||++. .|+++.+
T Consensus 277 ~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL--lp~e~LPeef--~i~q~d~ 343 (561)
T KOG4254|consen 277 AGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL--LPGEALPEEF--VIQQLDT 343 (561)
T ss_pred ccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh--CCCccCCchh--hhhhccc
Confidence 4889999999999998 5554 468899999999988887 4555555552 1122577764 5666643
No 49
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.38 E-value=0.28 Score=42.51 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.0
Q ss_pred EcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCC
Q psy10795 93 LYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP 129 (412)
Q Consensus 93 ~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP 129 (412)
+...+|+.|.. .++++.|.+.+|..+.||+||+|+-
T Consensus 119 ~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 119 HVRAEVVDIRR-DDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred EEeeEEEEEEE-cCCcEEEEECCCCEEEeCEEEECCC
Confidence 35779999999 8888999999999999999999974
No 50
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.25 E-value=0.26 Score=48.88 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=37.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP 129 (412)
+.+|+++++|.+|.+ ++++..|++.+|+++.||.+|+|+-
T Consensus 125 gV~i~~~~~v~~v~~-~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 125 GVTIRTRSRVSSVEK-DDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CcEEEecceEEeEEe-cCceEEEEcCCCCEEEccEEEEecC
Confidence 778999999999999 7788999999999999999999975
No 51
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=91.86 E-value=0.19 Score=48.81 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|.. ++++|+ |.+.+|+ +.||+||+|.-+..
T Consensus 161 Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp T-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhccccccccchhh-cccccccccccccc-cccceeEecccccc
Confidence 678999999999999 888898 9999996 99999999986643
No 52
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=91.43 E-value=0.36 Score=48.12 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|+. ++++|.|++.+|.++.||+||+|.-...
T Consensus 148 G~~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 148 RLTLHFNTEITSLER-DGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CcEEEeCCEEEEEEE-cCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 568999999999998 7778999999997799999999977654
No 53
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=90.95 E-value=0.45 Score=48.16 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCcEEcCCeEEEEEecCCCc-EEEEeCCCcE-EEeCEEEEeCChhhhh
Q psy10795 88 LSNKILYKKEVNKIDWEYQNG-AAVSCSDGSV-YTAYKIIITVPLGVLK 134 (412)
Q Consensus 88 ~~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~-~~ad~VIvTvP~~~L~ 134 (412)
.+..|+||++|+.|++ .+++ ..+.+.+|++ ++|+.||.+..+..+.
T Consensus 166 ~g~~i~ln~eV~~i~~-~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 166 NGVELRLNTEVTGIEK-QSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred cCCEEEecCeeeEEEE-eCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 3789999999999999 6664 5677888866 9999999999987654
No 54
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=90.40 E-value=0.55 Score=48.00 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=45.6
Q ss_pred CCcEEcCCeEEEEEecCCCc--EEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCcHHHHHHHhcCCCcceeEEEEE
Q psy10795 89 SNKILYKKEVNKIDWEYQNG--AAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIR 166 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~--V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp~~k~~ai~~l~~g~~~KV~l~ 166 (412)
|+.++|+++|++|.. ++++ +.|++.+|+++.|++||+..+. .|. . . + ..+.+...++-
T Consensus 246 Gg~~~L~~~V~~I~~-~~~g~~~~V~~~~Ge~i~a~~VV~~~s~----------~p~---~-~---~--~~~~v~R~i~i 305 (443)
T PTZ00363 246 GGTYMLNTPVDEVVF-DENGKVCGVKSEGGEVAKCKLVICDPSY----------FPD---K-V---K--KVGKVIRCICI 305 (443)
T ss_pred CcEEEcCCeEEEEEE-cCCCeEEEEEECCCcEEECCEEEECccc----------ccc---c-c---c--cccEEEEEEEE
Confidence 789999999999998 5433 5788999999999999984332 121 1 1 1 35667777777
Q ss_pred cCCCc
Q psy10795 167 FPAKW 171 (412)
Q Consensus 167 f~~~f 171 (412)
.++|.
T Consensus 306 ~~~pi 310 (443)
T PTZ00363 306 LNHPI 310 (443)
T ss_pred Ecccc
Confidence 77765
No 55
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=88.98 E-value=0.64 Score=47.03 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=29.1
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP 129 (412)
+.+|+++++|.+|.. .+++ +.|.+.++.++.||+||+|+=
T Consensus 123 gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp T-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE---
T ss_pred CCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEEecC
Confidence 678999999999998 6666 789887777999999999965
No 56
>PRK07236 hypothetical protein; Provisional
Probab=88.44 E-value=0.91 Score=45.32 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=36.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
..+|++++.|++|+. ++++|+|++.+|++++||.||.|==.
T Consensus 112 ~~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 112 AERYHLGETLVGFEQ-DGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CcEEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCC
Confidence 356999999999998 78889999999999999999999443
No 57
>PRK07588 hypothetical protein; Provisional
Probab=88.44 E-value=0.84 Score=45.60 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L 133 (412)
+.+|++++.|++|+. ++++|+|++++|+++++|.||.|--....
T Consensus 116 ~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 116 QVETIFDDSIATIDE-HRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred CeEEEeCCEEeEEEE-CCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 457999999999998 78889999999999999999998775433
No 58
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=88.23 E-value=29 Score=34.49 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
++.+++++.|++|+. .++.+.|++.+|++++|+.||-|.++.
T Consensus 100 ~~~~~~~~~V~~i~~-~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 100 GGVIRLNARVTSIEE-TGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred CCeEEEccEEEEEEe-cCceEEEEECCCCEEEeeEEEECCCcc
Confidence 456899999999998 777889999999999999999998854
No 59
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=88.23 E-value=0.15 Score=50.99 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=67.9
Q ss_pred hhcCCccccceEEEEcCCCCccCCCcceEeeeccCCcc-cccccccccCCCCceeeeeeeEeccCCcceeeecCCcCCCC
Q psy10795 10 LQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKT-DLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLVSGQTPVDL 88 (412)
Q Consensus 10 i~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~~d~~-~l~~~~~~~~~~~W~~~i~gf~~v~~~p~vl~~~~~~~~~~ 88 (412)
|..+|=.--.++|..|++|-|+.++..|...|.. +.. .+. .+..-+ .+..-.++..++ ..+.+.+...-
T Consensus 139 ~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~-----~d~~yf-~d~~q~~P~~Gy-t~~~~~ml~~~-- 208 (377)
T TIGR00031 139 IQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLS-----EDSSYF-PDRYQGLPKGGY-TKLFEKMLDHP-- 208 (377)
T ss_pred HHHHHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEec-----CCCCcc-cccccccccccH-HHHHHHHHhcC--
Confidence 6677777788999999999999999999999996 321 111 111111 111111222221 13555555431
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhc
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKS 135 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~ 135 (412)
+-+|+||+.+..|+. .+++|.+.. + .+. +.||.|.|+..+-.
T Consensus 209 ~i~v~l~~~~~~~~~-~~~~~~~~~--~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 209 LIDVKLNCHINLLKD-KDSQLHFAN--K-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred CCEEEeCCccceeec-cccceeecc--c-ccc-CcEEEecCchHHHh
Confidence 346999998888876 455454433 2 232 78999999876543
No 60
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=88.10 E-value=0.95 Score=45.64 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
...|+++++|++|+. ++++|+|++.+|++++||.||.|-=...
T Consensus 117 ~~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 117 EGIASFGKRATQIEE-QAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred CceEEcCCEEEEEEe-cCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 345899999999998 7888999999999999999999976554
No 61
>PRK06847 hypothetical protein; Provisional
Probab=87.53 E-value=1.1 Score=44.36 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|+. +++++.|++.+|+++.||.||+|.-..
T Consensus 121 gv~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 121 GADVRLGTTVTAIEQ-DDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CCEEEeCCEEEEEEE-cCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 568999999999998 778899999999999999999998764
No 62
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=87.48 E-value=1.4 Score=43.86 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=29.2
Q ss_pred CCcEEcCCeEEEE-EecCCCc---EEEEeCC--Cc-EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKI-DWEYQNG---AAVSCSD--GS-VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I-~~~~~~~---V~V~~~~--G~-~~~ad~VIvTvP~~~ 132 (412)
+.+| +|++|++| .. .+++ ++|++.+ +. .-.+|.||+|+|+..
T Consensus 139 ~A~v-l~~~Vt~I~~~-~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 139 GANV-LNTTVTSITRR-SSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred cCcE-ecceeEEEEec-cCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 6789 99999999 44 3333 4565543 22 235799999999954
No 63
>PRK09126 hypothetical protein; Provisional
Probab=86.79 E-value=1.3 Score=44.08 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+.+++|++|+. .++.+.|++.+|++++||.||.|--..
T Consensus 125 g~~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 125 GIELLTGTRVTAVRT-DDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred CcEEEcCCeEEEEEE-cCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 568999999999998 777889998899999999999998864
No 64
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=86.67 E-value=36 Score=33.90 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=36.0
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeC-CCcEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCS-DGSVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~-~G~~~~ad~VIvTvP~~ 131 (412)
.+|+.++.|+.|+. +++.|.|+.. +|++++||.||-|=-..
T Consensus 120 v~~~~~~~v~~~~~-~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 120 VTLRFGAEVEAVEQ-DGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred cEEEcCceEEEEEE-cCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 47999999999999 8888988888 99999999999986544
No 65
>PRK05868 hypothetical protein; Validated
Probab=86.44 E-value=1.4 Score=43.87 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=37.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|++++.|++|+. ++++|+|++++|++++||.||-|==..
T Consensus 118 ~v~i~~~~~v~~i~~-~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 118 SVEYLFDDSISTLQD-DGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred CcEEEeCCEEEEEEe-cCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 557999999999998 788899999999999999999886644
No 66
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.95 E-value=1.6 Score=43.74 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=37.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|+. ++++|.|++.+|++++||.||.|--...
T Consensus 126 gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 126 DIGLLANARLEQMRR-SGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred CCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 567999999999998 7888999999998999999999876543
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=85.91 E-value=1.6 Score=43.15 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+++.+++|++|.. +++++.|++.+| ++.||+||+|.-..
T Consensus 159 g~~~~~~~~V~~i~~-~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEP-TELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEe-cCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 678999999999998 777888888777 79999999998753
No 68
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=85.54 E-value=1.4 Score=42.54 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|+.|.. .+++| .|.+.+| ++.||.||+|+-...
T Consensus 151 g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 151 GVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred CCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 678999999999998 67766 4777777 899999999988755
No 69
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=85.45 E-value=1.7 Score=43.43 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=36.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|.. +++.|.|++.+|.+++||.||.|.-.
T Consensus 125 gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 125 GIDLREATSVTDFET-RDEGVTVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred CCEEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEEcCCC
Confidence 568999999999998 78889999989989999999999754
No 70
>PRK06753 hypothetical protein; Provisional
Probab=85.26 E-value=1.7 Score=43.05 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
..+|+++++|++|+. ++++|+|++.+|+++.+|.||-|--...
T Consensus 110 ~~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 110 EDAIFTGKEVTKIEN-ETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CceEEECCEEEEEEe-cCCcEEEEECCCCEEecCEEEECCCcch
Confidence 346999999999998 8888999999999999999999977543
No 71
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=85.04 E-value=1.9 Score=44.75 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=35.2
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVL 133 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L 133 (412)
.+|+++++|+.|...+++.+.|++.+| ++.||+||+|.-...+
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 468999999999982255678999888 7999999999876543
No 72
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=85.04 E-value=1.9 Score=43.07 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=37.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+.+++|++|.. ++++|+|++.+|++++||.||.|.-..
T Consensus 127 gv~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 127 GVQLHCPARVVALEQ-DADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred CCEEEcCCeEEEEEe-cCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 567999999999998 788899999889899999999997664
No 73
>PLN02268 probable polyamine oxidase
Probab=84.81 E-value=0.77 Score=46.61 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=25.8
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccC
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKD 32 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~ 32 (412)
.|.++|+++++|.+.|+++.|+++||+.
T Consensus 267 ~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 267 WKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred HHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 5789999999999999999999999953
No 74
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.77 E-value=2 Score=42.81 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=36.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|.. .+++|.|++.+|.++.+|.||.|.-..
T Consensus 127 g~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 127 GVTLHCPARVANVER-TQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred CcEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 567999999999998 788899999899889999999997654
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=84.50 E-value=1.9 Score=42.63 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=36.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|++|.. .++++.|++.+| ++.||+||+|+-...
T Consensus 163 gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 163 GAELLFNEPVTAIEA-DGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCEEECCCEEEEEEe-eCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 678999999999998 777889999888 799999999998643
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=84.18 E-value=2.2 Score=42.72 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|++|.. .++++.|.+.+| ++.||+||+|.....
T Consensus 163 Gv~i~~~~~V~~i~~-~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 163 GGEIRLGAEVTALDE-HANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred CCEEEcCCEEEEEEe-cCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 678999999999998 777888888877 799999999988753
No 77
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=83.84 E-value=2.9 Score=42.15 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=34.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|.. +++.+.|++ ++.++.+|+||+|+..
T Consensus 119 gv~i~~~~~V~~i~~-~~~~~~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 119 GVEILTNSKVKSIKK-DDNGFGVET-SGGEYEADKVILATGG 158 (400)
T ss_pred CCEEEeCCEEEEEEe-cCCeEEEEE-CCcEEEcCEEEECCCC
Confidence 568999999999987 677788877 4568999999999986
No 78
>PRK06834 hypothetical protein; Provisional
Probab=83.80 E-value=2.2 Score=44.18 Aligned_cols=42 Identities=21% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|.. ++++|.|++.+|++++||+||.|-=..
T Consensus 114 gv~i~~~~~v~~v~~-~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 114 GVPIYRGREVTGFAQ-DDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred CCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 567999999999998 888899998888899999999997543
No 79
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=83.44 E-value=0.89 Score=45.86 Aligned_cols=31 Identities=19% Similarity=0.546 Sum_probs=27.7
Q ss_pred hhhHHHHhhcCCccccceEEEEcCCCCccCC
Q psy10795 3 QIALGTLLQGLNFGTVDKIFIRFPAKWWKDG 33 (412)
Q Consensus 3 ~~~~~~ai~~lgfgt~~Kifl~f~~~~w~~~ 33 (412)
...+++++++..+|..+||+++|++|||.+.
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~ 303 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFWEEA 303 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhhhhc
Confidence 4578999999999999999999999999553
No 80
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.39 E-value=1.7 Score=45.07 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCcEEcCCeEEEEEecCCC-cEEEEeCCCcEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQN-GAAVSCSDGSVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~-~V~V~~~~G~~~~ad~VIvTvP~~~L 133 (412)
|++|+++++|++|.- +++ +++|++.+|..+++|.||+++-...+
T Consensus 238 Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 238 GGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALL 282 (487)
T ss_pred CCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhh
Confidence 789999999999998 554 68888888878899999999888333
No 81
>PRK07190 hypothetical protein; Provisional
Probab=83.09 E-value=2.3 Score=44.04 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|++++.|++|.+ ++++|.+++.+|++++|++||.|-=...
T Consensus 123 Gv~v~~~~~v~~l~~-~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 123 GAAVKRNTSVVNIEL-NQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CCEEEeCCEEEEEEE-cCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 568999999999998 7888988888888999999999987654
No 82
>PRK08013 oxidoreductase; Provisional
Probab=82.66 E-value=2.5 Score=42.38 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|++++.|++|+. ++++|.|+..+|++++||.||-|==..
T Consensus 126 ~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 126 DITLLAPAELQQVAW-GENEAFLTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred CcEEEcCCeeEEEEe-cCCeEEEEEcCCCEEEeeEEEEeCCCC
Confidence 457999999999998 788899999999999999999986654
No 83
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=82.35 E-value=2.6 Score=42.32 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=37.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|.. +++.+.|++.+|++++||.||.|-=..
T Consensus 126 ~v~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 126 NVTLLMPARCQSIAV-GESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred CeEEEcCCeeEEEEe-eCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 457999999999998 788899999999999999999998753
No 84
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.97 E-value=2.3 Score=43.76 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=32.9
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCC--c--EEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDG--S--VYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G--~--~~~ad~VIvTvP~~ 131 (412)
..|++|+.|++|+. .+++|+|++.++ . +..+|+||+|+-..
T Consensus 128 ~~I~~~t~V~~V~~-~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 128 EMVRFETEVVRVEP-VDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred ceEEecCEEEEEee-cCCeEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 34999999999998 778899987643 2 45799999998763
No 85
>PRK08163 salicylate hydroxylase; Provisional
Probab=81.81 E-value=2.7 Score=41.91 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=36.0
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
.+|+++++|++|.. ++++|.|++.+|+++.||.||.|.=..
T Consensus 125 v~~~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 125 VEFRTSTHVVGIEQ-DGDGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred cEEEeCCEEEEEec-CCCceEEEEcCCCEEecCEEEECCCcC
Confidence 57999999999998 778899999999899999999997554
No 86
>PRK09897 hypothetical protein; Provisional
Probab=81.38 E-value=2.6 Score=44.18 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=33.9
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCC-CcEEEeCEEEEeCCh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSD-GSVYTAYKIIITVPL 130 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~-G~~~~ad~VIvTvP~ 130 (412)
..|+.+++|+.|+. .++++.|++.+ |.++.||+||+|+-.
T Consensus 124 V~v~~~~~V~~I~~-~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQI-TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEE-eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 36788999999998 78889998865 468899999999875
No 87
>PRK06116 glutathione reductase; Validated
Probab=81.13 E-value=3.2 Score=42.35 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=34.4
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. ++++ +.|++.+|+++.+|.||+++-.
T Consensus 222 GV~i~~~~~V~~i~~-~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 222 GIRLHTNAVPKAVEK-NADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CcEEECCCEEEEEEE-cCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 568999999999987 5544 7888888989999999999743
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.07 E-value=2.6 Score=45.51 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=37.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|+. .+++|.|++.+|..+.||.||+|.-...
T Consensus 421 Gv~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 421 QLTIHFGHEVARLER-EDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEEeCCEeeEEEE-eCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 467999999999998 7788999998887788999999987754
No 89
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=81.03 E-value=2.7 Score=42.47 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
|.+|++++.|..|.. .++.+ .|.+++|.++.+|+||+|+--+
T Consensus 187 G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 187 GGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred CcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 789999999999998 66654 5778899999999999998765
No 90
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=79.84 E-value=3.2 Score=41.71 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC-----cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG-----SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G-----~~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|+. ++++|++.+.++ .+++||+||+|.-...
T Consensus 211 G~~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 211 GVQFRYGQEVTSIKT-DGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred CCEEEcCCEEEEEEE-eCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 778999999999998 677777765432 3789999999998764
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.80 E-value=3.6 Score=38.94 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=34.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.++++ +.|++|+. .++.+.|++.+|.++.+|+||+|+-.
T Consensus 71 gv~~~~-~~v~~v~~-~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 71 GAEIIY-EEVIKVDL-SDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred CCeEEE-EEEEEEEe-cCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 456778 89999998 77788898888889999999999975
No 92
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=79.43 E-value=3.5 Score=41.42 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|+. ++++| .|++.+| ++.||+||+|+-...
T Consensus 215 G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 215 GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred CCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 778999999999998 66666 4667665 899999999998743
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=79.01 E-value=4 Score=42.44 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCcEEcCCeEEEEEecC-CCcEEEE---eCCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEY-QNGAAVS---CSDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~-~~~V~V~---~~~G~--~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|+.|.+ . +++|+|+ +.+|+ ++.||+||+|.-...
T Consensus 199 Gv~i~~~~~V~~I~~-~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 199 NAQVKYNHEVVDLER-LSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CcEEEeCCEEEEEEE-CCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 678999999999998 5 7778776 44553 689999999987765
No 94
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=78.78 E-value=3.7 Score=42.13 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
|.+|+.+++|++|+. . +.+.|++.+| ++.||+||+|+-.
T Consensus 197 Gv~i~~~t~V~~i~~-~-~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 197 GVEIHENTPMTGLEE-G-QPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred CCEEECCCeEEEEee-C-CceEEEeCCc-EEECCEEEEcccc
Confidence 778999999999986 3 4577888888 7999999999753
No 95
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=78.62 E-value=4 Score=40.60 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=35.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|+++++|++|.. +++.+.|++.+|+++.+|.||+++..
T Consensus 197 gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEK-TDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEc-cCCEEEEEEcCCcEEECCEEEECcCC
Confidence 567899999999998 66778888889999999999999654
No 96
>PRK07045 putative monooxygenase; Reviewed
Probab=78.18 E-value=4 Score=40.66 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=36.0
Q ss_pred CCcEEcCCeEEEEEecCCCc--EEEEeCCCcEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG--AAVSCSDGSVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~--V~V~~~~G~~~~ad~VIvTvP~~~L 133 (412)
+.+|+++++|+.|+. ++++ +.|++.+|+++++|.||.|--....
T Consensus 121 gv~i~~~~~v~~i~~-~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 121 NVRLRFETSIERIER-DADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CeeEEeCCEEEEEEE-CCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 567999999999998 5555 3688889999999999988776543
No 97
>PRK07846 mycothione reductase; Reviewed
Probab=77.67 E-value=4.3 Score=41.56 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|+. .++++.|++.+|+++.+|.||+++..
T Consensus 220 ~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ-DGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred CeEEEeCCEEEEEEE-cCCEEEEEECCCcEeecCEEEEEECC
Confidence 456899999999987 66678888888889999999999765
No 98
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=77.39 E-value=4.8 Score=41.14 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.++++++.|++|.. .++++.|++.+|+++.+|.||+|+..
T Consensus 221 gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 221 GIRIHPQTSLTSITK-TDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCEEEeCCEEEEEEE-cCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 568999999999987 66678888888888999999999764
No 99
>PLN02507 glutathione reductase
Probab=77.05 E-value=5 Score=41.73 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. .++++.|++.+|+++.+|.||+++..
T Consensus 258 GI~i~~~~~V~~i~~-~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTK-TEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEE-eCCeEEEEECCCcEEEcCEEEEeecC
Confidence 568999999999987 66778888888888999999999764
No 100
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=76.93 E-value=4.9 Score=41.15 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=35.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+|++++.|++|.. .++++.+++.+|+++++|.||+++..
T Consensus 230 gI~v~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 230 GVTIRHNEEVEKVEG-GDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred CCEEEECCEEEEEEE-eCCeEEEEECCCCEEEeCEEEEeecC
Confidence 567999999999997 66778888888889999999999764
No 101
>PRK06184 hypothetical protein; Provisional
Probab=76.89 E-value=4.6 Score=41.89 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=36.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe---CCCcEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC---SDGSVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~---~~G~~~~ad~VIvTvP~~~L 133 (412)
+.+|+++++|++|++ ++++|+++. .++++++||+||.|-=....
T Consensus 123 gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 123 GHRVEFGCELVGFEQ-DADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred CCEEEeCcEEEEEEE-cCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 568999999999998 788888776 56678999999999776543
No 102
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=76.65 E-value=5.3 Score=40.89 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. +++++.|++.+|+++.+|.||+++..
T Consensus 223 gI~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ-DGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred CCEEEeCCEEEEEEE-cCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 446999999999997 66778888888888999999999865
No 103
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=75.56 E-value=5.7 Score=40.63 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC--cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG--SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G--~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. +++++.|.+.+| +++.+|.||+|+..
T Consensus 225 gi~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 225 GVKILTNTKVTAVEK-NDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 457999999999988 677888887777 47999999999765
No 104
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.43 E-value=5.1 Score=41.07 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=34.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC---cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG---SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G---~~~~ad~VIvTvP~ 130 (412)
+-+|++|+.|++|.. +++++.|.+.+| +++.+|.||+|+..
T Consensus 227 gV~i~~~~~V~~i~~-~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 227 GIKIKTGAKAKKVEQ-TDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 568999999999997 666788877665 67899999999765
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=75.39 E-value=4.9 Score=41.62 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCcEEcCCeEEEEEecCC-CcEEEEe---CCC--cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NGAAVSC---SDG--SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~V~V~~---~~G--~~~~ad~VIvTvP~~~ 132 (412)
|.+|+++++|++|.. .+ ++|.|++ .+| .+++||+||+|.-...
T Consensus 192 Gv~i~~~t~V~~i~~-~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 192 GTTIRFGHEVRNLKR-QSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CCEEEeCCEEEEEEE-cCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 778999999999998 54 4576653 334 2689999999987654
No 106
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=74.79 E-value=6.2 Score=40.61 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=35.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. .++++.|++.+|+++.+|.||+++..
T Consensus 232 gV~i~~~~~v~~v~~-~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 232 GMTVLKRSRAESVER-TGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred CcEEEcCCEEEEEEE-eCCEEEEEECCCcEEEecEEEEeecC
Confidence 557999999999987 66778888888889999999999664
No 107
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=74.77 E-value=5.8 Score=40.70 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCc--EEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGS--VYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~--~~~ad~VIvTvP 129 (412)
+.+|+++++|++++. .++++.+++++|+ ++++|+|++|+-
T Consensus 228 gv~i~~~~~v~~~~~-~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 228 GVKILLNTKVTAVEK-KDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred CeEEEccceEEEEEe-cCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 457999999999998 6666989988876 688999999964
No 108
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=74.58 E-value=5.4 Score=42.96 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=36.6
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
..|+++++|++|+. ++++|+|++.+|+++++|.||.|--...
T Consensus 207 ~~i~~g~~V~~I~~-~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 207 DVIRNESNVVDFED-SGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred CEEEcCCEEEEEEE-eCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 34789999999998 8889999999998999999999977544
No 109
>PRK06185 hypothetical protein; Provisional
Probab=74.04 E-value=98 Score=30.77 Aligned_cols=42 Identities=12% Similarity=-0.049 Sum_probs=32.3
Q ss_pred CCcEEcCCeEEEEEecCCCcE---EEEeCCCc-EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA---AVSCSDGS-VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V---~V~~~~G~-~~~ad~VIvTvP~~ 131 (412)
+.+|+.++.|++|.. +++++ .+.+.+|+ +++||.||.|--..
T Consensus 123 ~v~i~~~~~v~~~~~-~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 123 NFTLRMGAEVTGLIE-EGGRVTGVRARTPDGPGEIRADLVVGADGRH 168 (407)
T ss_pred CcEEEeCCEEEEEEE-eCCEEEEEEEEcCCCcEEEEeCEEEECCCCc
Confidence 457999999999998 66655 44455674 78999999998654
No 110
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=73.75 E-value=6.8 Score=38.83 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=34.5
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
.+++ ++.|++|.. .++++.|++.+|.++.||.||.|.-..
T Consensus 127 v~~~-~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 127 LTWF-PARAQGLEV-DPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred cEEE-cceeEEEEe-cCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 4577 999999988 778899999899889999999987764
No 111
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=73.09 E-value=5.2 Score=41.95 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCcEEcCCeEEEEEecCC----CcEEEEeCC-Cc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQ----NGAAVSCSD-GS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~----~~V~V~~~~-G~--~~~ad~VIvTvP~~ 131 (412)
...|++|+.|++|++..+ ++|.|++.+ |+ +-.+|+||+|+-..
T Consensus 100 ~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 100 RKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp GGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred cceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 457999999999998322 468898854 43 34799999997653
No 112
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.31 E-value=8 Score=40.36 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=36.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+++++++|++|.. .++.+.|++.+|+.+.+|+||+|+-..
T Consensus 281 gv~i~~~~~V~~I~~-~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIET-EDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 457899999999988 677788888888899999999999864
No 113
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=71.72 E-value=8 Score=36.32 Aligned_cols=42 Identities=12% Similarity=0.019 Sum_probs=34.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC-CcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD-GSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~-G~~~~ad~VIvTvP~~ 131 (412)
+.+++++++|++|.. .++++.+...+ +.+++||+||.|.-..
T Consensus 105 gv~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 105 GAELRLGTTVLDVEI-HDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred CCEEEeCcEEeeEEE-eCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 568999999999998 77777776544 4589999999998874
No 114
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=71.36 E-value=6.7 Score=41.10 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC--CC--cEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS--DG--SVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~--~G--~~~~ad~VIvTvP~~~L 133 (412)
+.+|+++++|++|++ ++++|+|++. +| .+++||+||-|-=....
T Consensus 128 gv~v~~g~~v~~i~~-~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 128 HVRVRFGHEVTALTQ-DDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred CcEEEcCCEEEEEEE-cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 568999999999998 8888988775 56 46899999998766543
No 115
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=70.68 E-value=8 Score=38.66 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=30.1
Q ss_pred CceEEEecccccCcC-c-c-cchhhhhccHHHHHHHHHHH
Q psy10795 341 RPVLLFAGEATSPHH-Y-G-TVNGAVESGARETANAIVYL 377 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~-~-g-~~eGA~~SG~raA~~i~~~l 377 (412)
.|+||||||.+..+. . | -++-|+.||..|++.+...|
T Consensus 336 ~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 336 RPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 368999999997542 2 2 58999999999999988765
No 116
>PLN02463 lycopene beta cyclase
Probab=70.21 E-value=8.5 Score=39.47 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+++ +.+|++|+. .++++.|++.+|.+++||.||.|.-.
T Consensus 128 GV~~~-~~~V~~I~~-~~~~~~V~~~dG~~i~A~lVI~AdG~ 167 (447)
T PLN02463 128 GVQFH-QAKVKKVVH-EESKSLVVCDDGVKIQASLVLDATGF 167 (447)
T ss_pred CCEEE-eeEEEEEEE-cCCeEEEEECCCCEEEcCEEEECcCC
Confidence 44554 679999998 78889999999999999999999854
No 117
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=70.15 E-value=8.8 Score=39.89 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=32.6
Q ss_pred CcEEcCCeEEEEEecCCC-cEEEEeC---CCc--EEEeCEEEEeCChhh
Q psy10795 90 NKILYKKEVNKIDWEYQN-GAAVSCS---DGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~-~V~V~~~---~G~--~~~ad~VIvTvP~~~ 132 (412)
.+|+++++|++|+. .++ .|.|++. +|+ ++.|++||++.-...
T Consensus 199 v~i~~~teV~~I~~-~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 199 FELQLGHEVRDIKR-NDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred eEEEeCCEEEEEEE-CCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 48999999999998 555 4776643 454 689999999987764
No 118
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=70.10 E-value=3.2 Score=41.47 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=30.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC-cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG-SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G-~~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|+ + +++.|.+.++ .++.||+||+|+--
T Consensus 100 gV~i~~~~~V~~i~--~-~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 100 GVQFHTRHRWIGWQ--G-GTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCEEEeCCEEEEEe--C-CcEEEEECCCceEEecCEEEEcCCC
Confidence 67899999999993 2 3577776543 47999999999875
No 119
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.09 E-value=9.2 Score=39.91 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.+++++++|++|.+ .++.+.|++.+|+++.+|+||+|+-..
T Consensus 280 gv~i~~~~~V~~I~~-~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEP-AAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEe-cCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 457899999999998 677888988888899999999999874
No 120
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=68.60 E-value=5.2 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG 116 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G 116 (412)
+-+|++|+.|++|.. ++++++|+++||
T Consensus 54 gV~v~~~~~v~~i~~-~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEK-DGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEE-ETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEecC
Confidence 457999999999999 666688888876
No 121
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.52 E-value=10 Score=37.99 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. ++.+.|++.+|+++.||.||+++..
T Consensus 200 GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 200 GVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCC
Confidence 557999999999975 4457788889999999999998764
No 122
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=68.43 E-value=10 Score=37.59 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=34.3
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
.+++.++.|++|.. ++++|.|++.++ +++||.||.|==..
T Consensus 120 v~~~~~~~v~~i~~-~~~~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 120 ITLIDNNQYQEVIS-HNDYSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred cEEECCCeEEEEEE-cCCeEEEEEcCC-EEeeCEEEEeCCCC
Confidence 46889999999998 788899998777 89999999986554
No 123
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=68.17 E-value=10 Score=38.57 Aligned_cols=43 Identities=21% Similarity=0.120 Sum_probs=35.0
Q ss_pred CcEEcCCeEEEEEec------CCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 90 NKILYKKEVNKIDWE------YQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~------~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
.+|+++++|++|+.. ++++|+|++.+|++++||.||-|==...
T Consensus 135 v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 135 VKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred eEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 479999999999751 2467999999999999999999865543
No 124
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=68.05 E-value=10 Score=38.39 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=32.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCCC--cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSDG--SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~G--~~~~ad~VIvTvP~ 130 (412)
|.+|..++.|.+|.. .+++|+ |.+.++ ..++||+||+|+=.
T Consensus 277 Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 277 GGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred CCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 778999999999998 677775 555665 47999999999543
No 125
>KOG1346|consensus
Probab=67.85 E-value=11 Score=37.91 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=43.9
Q ss_pred CCceeeeeeeEeccCCcceeeecCCcCCCCCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 59 KPWVWGILGFYMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 59 ~~W~~~i~gf~~v~~~p~vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.|.......+...+.+-+--+.+-..+-+|.-|..+..|.+|.. .+.. |..+||.++.+|.+++|+-.
T Consensus 241 kqwsGkeRsiffepd~FfvspeDLp~~~nGGvAvl~G~kvvkid~-~d~~--V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 241 KQWSGKERSIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDE-EDKK--VILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred cccCCccceeEecCCcceeChhHCcccccCceEEEeccceEEeec-ccCe--EEecCCcEeehhheeeecCc
Confidence 357755544444434333332333222223556888999999987 6654 45688999999999999754
No 126
>PRK12831 putative oxidoreductase; Provisional
Probab=66.91 E-value=4.8 Score=41.41 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
++.++||.|||.... +..+.-|+..|.+||..|..+|..
T Consensus 424 Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 424 TSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred cCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999864 367899999999999999998864
No 127
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=66.40 E-value=12 Score=37.35 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
|.+++.+++|++|...+++++ .|++.+| ++.+++||++.-..
T Consensus 197 Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 678999999999986234554 4788888 79999988875543
No 128
>KOG2820|consensus
Probab=66.28 E-value=10 Score=37.05 Aligned_cols=46 Identities=33% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcEEcCCeEEEEEec--CCCcEEEEeCCCcEEEeCEEEEeCChhhhh
Q psy10795 89 SNKILYKKEVNKIDWE--YQNGAAVSCSDGSVYTAYKIIITVPLGVLK 134 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~--~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~ 134 (412)
|..++-+..|+.|... .+..|.|.|.+|..|.|+.+|+|+-...-+
T Consensus 167 G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 167 GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred CeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 7789999999999852 345688999999889999999999887654
No 129
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=65.94 E-value=7.9 Score=38.16 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=28.6
Q ss_pred cEEcCCeEEEEEecCC-CcEEEEeCC---C--cEEEeCEEEEeCC
Q psy10795 91 KILYKKEVNKIDWEYQ-NGAAVSCSD---G--SVYTAYKIIITVP 129 (412)
Q Consensus 91 ~I~ln~~V~~I~~~~~-~~V~V~~~~---G--~~~~ad~VIvTvP 129 (412)
+|+-++.|++++. .+ +++.|++.+ | .++++|+||+|+-
T Consensus 295 ~l~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 295 RLLPNTEVTSAEQ-DGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEETTEEEEEEEE-ES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EEeCCCEEEEEEE-CCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 6888999999999 55 589888764 2 3679999999973
No 130
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=65.92 E-value=10 Score=37.30 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.+++|++|+. . .|++.+| ++.||+||+|+-...
T Consensus 160 Gv~i~~~t~V~~i~~-~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 160 GVEFHWNTAVTSVET-G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred CCEEEeCCeEEEEec-C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 678999999999976 3 5777777 578999999988743
No 131
>PRK06996 hypothetical protein; Provisional
Probab=65.74 E-value=11 Score=37.68 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC---cEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG---SVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G---~~~~ad~VIvTvP 129 (412)
+.++++++.|++|+. ++++|+|+..+| ++++||.||-|--
T Consensus 129 g~~~~~~~~v~~~~~-~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 129 PVRWLTSTTAHAPAQ-DADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred CCEEEcCCeeeeeee-cCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 567999999999998 888999988754 5899999999944
No 132
>PRK06475 salicylate hydroxylase; Provisional
Probab=65.62 E-value=12 Score=37.37 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=34.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe---CCCcEEEeCEEEEeCChhhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC---SDGSVYTAYKIIITVPLGVLK 134 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~---~~G~~~~ad~VIvTvP~~~L~ 134 (412)
+.+|+++++|++|.. ++++|+|++ .++++++||.||-|=-....-
T Consensus 122 ~i~v~~~~~v~~~~~-~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 122 GIEIKLGAEMTSQRQ-TGNSITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred CcEEEECCEEEEEec-CCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 346999999999998 788888776 334578999999886665433
No 133
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.34 E-value=4.8 Score=38.08 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVY 376 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~ 376 (412)
+.++||.+||.+.. .+..+.-|+..|..||..|...
T Consensus 264 ~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 264 SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhh
Confidence 34689999999974 3366889999999999999865
No 134
>PRK11445 putative oxidoreductase; Provisional
Probab=65.23 E-value=14 Score=36.37 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe-CCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC-SDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~-~~G~--~~~ad~VIvTvP~~~ 132 (412)
+.+|++++.|++|.. .++++.|++ .+|+ +++||.||.|.-...
T Consensus 112 gv~v~~~~~v~~i~~-~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 112 SVEVYHNSLCRKIWR-EDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred CCEEEcCCEEEEEEE-cCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 557999999999998 778888875 5664 689999998877643
No 135
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=65.07 E-value=11 Score=39.33 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=34.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC---Cc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD---GS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~---G~--~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|.. +++.+.|++.+ |+ ++.|+.||+|.-+..
T Consensus 169 Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 169 GAEILTRTRVVSARR-ENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred CCEEEcCcEEEEEEE-eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 778999999999988 66667776543 53 689999999988743
No 136
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.97 E-value=13 Score=37.72 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. +++++.|++.+| ++.+|.||+++-.
T Consensus 213 gV~v~~~~~v~~i~~-~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISH-HENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEE-cCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 567999999999998 667788877666 6899999999643
No 137
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=64.06 E-value=6.4 Score=40.57 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
+.++||.+||.+.. +..+..|+..|..||..|...|...
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 44689999999874 3468899999999999999998654
No 138
>PRK14727 putative mercuric reductase; Provisional
Probab=64.01 E-value=14 Score=38.03 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|.. .++++.|.+.+| ++.+|.||+++..
T Consensus 242 GV~i~~~~~V~~i~~-~~~~~~v~~~~g-~i~aD~VlvA~G~ 281 (479)
T PRK14727 242 GIEVLNNTQASLVEH-DDNGFVLTTGHG-ELRAEKLLISTGR 281 (479)
T ss_pred CCEEEcCcEEEEEEE-eCCEEEEEEcCC-eEEeCEEEEccCC
Confidence 567999999999987 667788877666 6899999999876
No 139
>PRK06126 hypothetical protein; Provisional
Probab=63.78 E-value=11 Score=39.47 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe---CCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC---SDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~---~~G~--~~~ad~VIvTvP~~~ 132 (412)
+.+|++++.|++|.. ++++|+++. .+|+ ++.+|+||.|-=...
T Consensus 141 ~v~i~~~~~v~~i~~-~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 141 GVTLRYGHRLTDFEQ-DADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CceEEeccEEEEEEE-CCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 458999999999998 777787765 3464 689999999976654
No 140
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=63.69 E-value=15 Score=37.58 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC---CC--cEEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS---DG--SVYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~---~G--~~~~ad~VIvTvP~~~L 133 (412)
+..|++|+.|+.|++..++.|.|++. +| .++.|++|+|..--..|
T Consensus 196 ~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 196 GFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred CcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 56899999999999944555988763 23 47899999998765544
No 141
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=63.57 E-value=14 Score=37.54 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=32.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. +++.+.+++ +|+++.+|.||+|+-.
T Consensus 212 GI~i~~~~~V~~i~~-~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 212 GITFLLNAHTTEVKN-DGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred CCEEEcCCEEEEEEe-cCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 567999999999987 666676665 5668999999998643
No 142
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=62.91 E-value=8.6 Score=37.89 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCcEEcCCeEEEEEecCCC----cEEEEeC----CCcEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQN----GAAVSCS----DGSVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~----~V~V~~~----~G~~~~ad~VIvTvP 129 (412)
...++++++|++|+. .++ .++|++. +++++.|+.||+++.
T Consensus 109 ~~~v~~~~~V~~I~~-~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 109 DNQVRYGSEVTSIEP-DDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp TTTEEESEEEEEEEE-EEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred CCceEECCEEEEEEE-ecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 445999999999999 443 3788873 346899999999976
No 143
>PRK08244 hypothetical protein; Provisional
Probab=62.63 E-value=14 Score=38.28 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC--CC-cEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS--DG-SVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~--~G-~~~~ad~VIvTvP~~ 131 (412)
+.+|+++++|++|.. ++++|+|+.. +| ++++||+||.|-=..
T Consensus 114 gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 114 GVEIFRGAEVLAVRQ-DGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred CCeEEeCCEEEEEEE-cCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 567999999999998 7788877653 56 478999999997543
No 144
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=62.41 E-value=13 Score=38.20 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC--C--cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD--G--SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~--G--~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. +++++.|+..+ | +++.+|.||+++..
T Consensus 238 gi~i~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 238 GLDIHLGVKIGEIKT-GGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred CcEEEeCcEEEEEEE-cCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 568999999999997 66677776543 4 46899999999764
No 145
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.28 E-value=6.5 Score=42.36 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
++.++||.|||.... +..+.-|+..|++||..|..+|..
T Consensus 615 Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 345789999999754 457899999999999999998864
No 146
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=62.04 E-value=17 Score=37.25 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCC-cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDG-SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G-~~~~ad~VIvTvP~ 130 (412)
+-++++|+.|++|.. .+++ +.|++.+| +.+.+|.||+++..
T Consensus 221 gI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 221 GINVHKLSKPVKVEK-TVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred CCEEEcCCEEEEEEE-eCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 567999999999987 4444 77777778 57899999999754
No 147
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=61.93 E-value=14 Score=36.93 Aligned_cols=40 Identities=5% Similarity=0.102 Sum_probs=31.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+-++++++.|++|+. ... .|++.+|+++.+|++|+|+-..
T Consensus 72 ~i~~~~g~~V~~id~-~~~--~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 72 NVHLHSGVTIKTLGR-DTR--ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCEEEcCCEEEEEEC-CCC--EEEECCCCEEEcCEEEEccCCC
Confidence 446899999999987 443 4566788899999999998764
No 148
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=61.75 E-value=16 Score=37.00 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC-CcEEE--eCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD-GSVYT--AYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~-G~~~~--ad~VIvTvP~ 130 (412)
+.++++++.|++|+. .++.|.+...+ ++++. +|+||+|+=.
T Consensus 58 gv~~~~~~~V~~id~-~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 58 GIDVKTNHEVIEVND-ERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred CCeEEecCEEEEEEC-CCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 446889999999998 77778777543 45778 9999999875
No 149
>PTZ00052 thioredoxin reductase; Provisional
Probab=61.58 E-value=17 Score=37.76 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=34.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. .++.+.|.+.+|+++.+|.||+++..
T Consensus 236 GV~i~~~~~v~~v~~-~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 236 GTLFLEGVVPINIEK-MDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred CCEEEcCCeEEEEEE-cCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 557999999999987 55667788888888999999999764
No 150
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=61.52 E-value=16 Score=37.54 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC--CC--cEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS--DG--SVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~--~G--~~~~ad~VIvTvP 129 (412)
+-+|++|++|++|.. +++.+.|++. +| +++.+|.||+++-
T Consensus 227 gV~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 227 GVKILTGTKVESIDD-NGSKVTVTVSKKDGKAQELEADKVLQAIG 270 (466)
T ss_pred CCEEEECCEEEEEEE-eCCeEEEEEEecCCCeEEEEeCEEEECcC
Confidence 568999999999987 6666666543 66 3689999999964
No 151
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=60.02 E-value=16 Score=37.94 Aligned_cols=43 Identities=14% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC----cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG----SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G----~~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|.. +++.+.|++.++ .++.|+.||.|.-+..
T Consensus 169 Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 169 GATILTRTRCVSARR-EGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CCEEecCcEEEEEEE-cCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 778999999999998 677677776554 2589999999998753
No 152
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=59.10 E-value=8.1 Score=38.10 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=32.4
Q ss_pred hhHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeecc
Q psy10795 4 IALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQ 43 (412)
Q Consensus 4 ~~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~ 43 (412)
..+.++|+++.++.+.|+++.|.++||..+...+.+++.+
T Consensus 277 ~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 316 (450)
T PF01593_consen 277 EDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSD 316 (450)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEES
T ss_pred ccccccccccccCcceeEEEeeecccccccccccceeccc
Confidence 4578999999999999999999999998865444444443
No 153
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=58.97 E-value=20 Score=37.12 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCcEEcCCeEEEEEecCCCc-EEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-AAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. .+++ +.|++.+|+++.+|.||+++-.
T Consensus 245 GI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 245 GINIMTNENPAKVTL-NADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred CCEEEcCCEEEEEEE-cCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 567999999999987 4444 6677777888999999998653
No 154
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=58.78 E-value=19 Score=36.51 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe-CCCcEEE--eCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC-SDGSVYT--AYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~-~~G~~~~--ad~VIvTvP~~ 131 (412)
+-++++++.|++|+. +++.|.++. .+|++++ +|++|+|+-..
T Consensus 70 gv~~~~~~~V~~id~-~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDA-KNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEEC-CCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 446889999999998 777787765 3456676 99999998763
No 155
>PRK14694 putative mercuric reductase; Provisional
Probab=58.78 E-value=20 Score=36.88 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. +++.+.+.+.++ ++.+|.||+|+..
T Consensus 232 GI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 232 GIEVLKQTQASEVDY-NGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred CCEEEeCCEEEEEEE-cCCEEEEEECCC-EEEeCEEEEccCC
Confidence 567999999999987 666677776555 7999999999754
No 156
>PRK07538 hypothetical protein; Provisional
Probab=57.54 E-value=18 Score=36.28 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=32.9
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCC-----cEEEeCEEEEeCChhhh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDG-----SVYTAYKIIITVPLGVL 133 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G-----~~~~ad~VIvTvP~~~L 133 (412)
..|+++++|++|.. +++++.+.+.++ ++++||.||-|--....
T Consensus 119 ~~i~~~~~v~~~~~-~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 119 DAVRTGHRVVGFEQ-DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred cEEEcCCEEEEEEe-cCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 36999999999998 667676665443 47899999998766543
No 157
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=57.49 E-value=16 Score=40.30 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+++++++|++|+. .. -+|++.+|+++.+|++|+|+=.
T Consensus 68 gv~~~~g~~V~~Id~-~~--k~V~~~~g~~~~yD~LVlATGs 106 (785)
T TIGR02374 68 GITLYTGETVIQIDT-DQ--KQVITDAGRTLSYDKLILATGS 106 (785)
T ss_pred CCEEEcCCeEEEEEC-CC--CEEEECCCcEeeCCEEEECCCC
Confidence 457999999999987 43 3567788889999999999875
No 158
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.33 E-value=9 Score=41.18 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
++.++||.|||.... +..+.-|+..|++||..|..+|...
T Consensus 598 Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 598 THLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344789999998865 3578899999999999999998653
No 159
>PRK10262 thioredoxin reductase; Provisional
Probab=57.20 E-value=9.7 Score=36.82 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
++.|+||-|||.++.. ...+-.|+-.|..||..|..+|...
T Consensus 277 t~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 277 TSIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred cCCCCEEECeeccCCC-cceEEEEehhHHHHHHHHHHHHHhc
Confidence 4557999999998653 3456669999999999999998653
No 160
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=56.92 E-value=23 Score=36.08 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=31.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEE-EeCCCc--EEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAV-SCSDGS--VYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V-~~~~G~--~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|.. .+++|.+ .+.+|+ .++||.||+|+--
T Consensus 273 Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 273 GGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 678999999999998 6666654 344553 5899999999654
No 161
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=56.78 E-value=20 Score=39.67 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=34.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. ++....|++.+|+++.+|.||+++..
T Consensus 196 GV~v~~~~~v~~i~~-~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 196 GLTFLLEKDTVEIVG-ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred CCEEEeCCceEEEEc-CCceEEEEECCCCEEEcCEEEECCCC
Confidence 567999999999986 55445678889999999999999875
No 162
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.74 E-value=9.3 Score=40.35 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcch
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREGF 382 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~~ 382 (412)
+.++||.+||.... +.++.-|+..|.+||..|...|.+..+
T Consensus 408 s~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 408 GRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred CCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44689999998763 468999999999999999999986543
No 163
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.73 E-value=19 Score=36.90 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCcEEcCCeEEEEEecCC-CcEEEEeCCCcE--EEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NGAAVSCSDGSV--YTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~V~V~~~~G~~--~~ad~VIvTvP~ 130 (412)
.-.|++++.|+.+.++++ +.|+|++++|.+ ++||+||+|+=.
T Consensus 98 ~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 98 RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 346899999999988433 468999988865 459999999877
No 164
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=56.30 E-value=23 Score=35.04 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+..+ ++..|+.|..+.++.+.|++.+|.+++|+.||.|.....
T Consensus 99 gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 99 GVLW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 3345 467899998722667888888888999999999999875
No 165
>PRK06370 mercuric reductase; Validated
Probab=56.07 E-value=24 Score=36.08 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=31.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe--C-CCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC--S-DGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~--~-~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|.+|+. .++++.|+. . ++.++.+|.||+++..
T Consensus 226 GV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 226 GIDVRLNAECIRVER-DGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred CCEEEeCCEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 568999999999987 666555543 2 3457999999999764
No 166
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=55.43 E-value=22 Score=36.03 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCcEEcCCeEEEEEecC--CCcEE-EEeC-CCcEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEY--QNGAA-VSCS-DGSVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~--~~~V~-V~~~-~G~~~~ad~VIvTvP 129 (412)
+.+|+++++|++|.. + ++.|. |... ++.++.|+.||+|+-
T Consensus 137 Gv~i~~~~~v~~l~~-~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 137 GVEIRYGIAVDRIPP-EAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred CCEEEeCCEEEEEEe-cCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 678999999999987 4 34443 4433 345789999999988
No 167
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=55.39 E-value=11 Score=38.74 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
+.++||.+||.... +..+.-|+..|..||..|...|..+
T Consensus 416 s~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 416 SLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34789999998853 3578889999999999999988653
No 168
>PRK13748 putative mercuric reductase; Provisional
Probab=55.02 E-value=24 Score=37.07 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=32.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. .++.+.+.+.++ ++.+|.||+|+..
T Consensus 324 gI~i~~~~~v~~i~~-~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 324 GIEVLEHTQASQVAH-VDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CCEEEcCCEEEEEEe-cCCEEEEEecCC-eEEeCEEEEccCC
Confidence 557999999999987 666777777666 7999999999764
No 169
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=53.50 E-value=24 Score=35.72 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=30.1
Q ss_pred CCcEEcCCeEEEEEecCC-Cc---EEEEeCCCc--EEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NG---AAVSCSDGS--VYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~---V~V~~~~G~--~~~ad~VIvTvP~ 130 (412)
+.+|+++++|++|.. ++ ++ |.+.+.+|+ .+.++.||+|+=.
T Consensus 144 gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQ-DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred CCEEEeCCEeeEeEE-CCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 668999999999998 54 43 345455554 3689999999764
No 170
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=53.47 E-value=27 Score=36.18 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=32.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC---cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG---SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G---~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. .++.+.|+..+| +++.+|.||+++..
T Consensus 234 gV~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQ-IEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred CCEEEeCceEEEEEE-cCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 567999999999987 666677766555 37899999999764
No 171
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=53.27 E-value=23 Score=34.78 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=30.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|+. + .|++.+|+++.+|.||++++.
T Consensus 205 gV~v~~~~~v~~i~~-~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD-G----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC-C----eEEeCCCCEEecCEEEEccCC
Confidence 567999999999864 2 466678889999999999875
No 172
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=53.14 E-value=17 Score=34.91 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC---CCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS---DGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~---~G~--~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|+.+.. +++++++... +|+ +++||.||-|==...
T Consensus 125 gv~i~~~~~v~~~~~-d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQ-DDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp TEEEEESEEEEEEEE-ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hhhheeeeecccccc-cccccccccccccCCceeEEEEeeeecccCccc
Confidence 457999999999998 7777765543 342 689999999965543
No 173
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=53.10 E-value=28 Score=35.15 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. ++ .+ +.+.+|+++.+|.||++++.
T Consensus 193 gV~v~~~~~v~~i~~-~~-~~-v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 193 EINLRLNEEVDSIEG-EE-RV-KVFTSGGVYQADMVILATGI 231 (427)
T ss_pred CCEEEeCCEEEEEec-CC-CE-EEEcCCCEEEeCEEEECCCc
Confidence 567999999999976 43 34 45667889999999999876
No 174
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=52.91 E-value=25 Score=35.94 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC---CCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS---DGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~---~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. +++.+.|++. +++++.+|.||+|+..
T Consensus 221 gV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 221 GIEVVTSAQVKAVSV-RGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred CCEEEcCcEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 568999999999987 6556665543 2357999999999753
No 175
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=52.82 E-value=26 Score=36.79 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe--CCCc-EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC--SDGS-VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~--~~G~-~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|++|+. ++++|+++. .+|. +++||+||.|.-...
T Consensus 140 ~v~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 140 NIDLRWKNKVTGLEQ-HDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred CcEEEeCCEEEEEEE-cCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 457999999999998 777887654 3554 689999999987543
No 176
>PRK13984 putative oxidoreductase; Provisional
Probab=52.23 E-value=12 Score=39.92 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
++.++||.|||.+... . +--|+..|..||..|..+|..
T Consensus 566 Ts~~gVfAaGD~~~~~--~-~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 566 TSIPWLFAGGDIVHGP--D-IIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred cCCCCEEEecCcCCch--H-HHHHHHHHHHHHHHHHHHhcc
Confidence 3457899999998653 3 455999999999999998854
No 177
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.11 E-value=10 Score=38.79 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l 377 (412)
+.++||.|||.+.. +..+.-|+..|.+||..|..+|
T Consensus 414 s~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 414 SIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhhC
Confidence 44789999999864 3578899999999999998764
No 178
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=51.61 E-value=25 Score=34.89 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.5
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+.++++++.|++|+. ... .|++ +|.++.+|+||+|+=.
T Consensus 72 gv~~~~~~~V~~id~-~~~--~v~~-~~~~~~yd~LVlATG~ 109 (377)
T PRK04965 72 NLRLFPHTWVTDIDA-EAQ--VVKS-QGNQWQYDKLVLATGA 109 (377)
T ss_pred CCEEECCCEEEEEEC-CCC--EEEE-CCeEEeCCEEEECCCC
Confidence 457889999999987 544 3444 5668999999999875
No 179
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=51.29 E-value=28 Score=34.68 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=33.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe-CCCc--EEEeCEEEEeCChhhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC-SDGS--VYTAYKIIITVPLGVL 133 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~-~~G~--~~~ad~VIvTvP~~~L 133 (412)
+.+|+++++|++|+..+++.+.|+. .+|+ +++||.||-|==....
T Consensus 117 gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 117 GGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred CCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 5689999999999752455677776 4674 6899999988665543
No 180
>KOG1346|consensus
Probab=50.75 E-value=12 Score=37.74 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=37.4
Q ss_pred CCCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 88 ~~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+|.+|+-|..|.++.. +...+.+...||.++..|.||+++-.
T Consensus 406 ~GV~V~pna~v~sv~~-~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRK-CCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred cCceeccchhhhhhhh-hccceEEEecCCCeeeeeeEEEEecC
Confidence 3668999999999998 88889999999999999999999754
No 181
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.39 E-value=13 Score=40.80 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
++.++||-|||.... +.++.-|+..|.+||..|.+.|..
T Consensus 713 Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 713 SSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345789999999864 357899999999999999998864
No 182
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=49.75 E-value=13 Score=38.45 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
++.++||.|||.+.. +..+.-|+..|..||..|...|...
T Consensus 442 Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 442 TSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred ECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345689999998754 3467789999999999999998754
No 183
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=49.38 E-value=33 Score=34.79 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|+++++|++|.. +++.+.+.+.+ .++.+|.||+++..
T Consensus 205 gI~v~~~~~v~~i~~-~~~~~~v~~~~-~~i~~d~vi~a~G~ 244 (444)
T PRK09564 205 GVELHLNEFVKSLIG-EDKVEGVVTDK-GEYEADVVIVATGV 244 (444)
T ss_pred CCEEEcCCEEEEEec-CCcEEEEEeCC-CEEEcCEEEECcCC
Confidence 557999999999975 44333455544 47999999999775
No 184
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=49.25 E-value=15 Score=39.57 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
++.++||.+||.... +.++.-|+..|..||..|...|..+.
T Consensus 464 Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 464 TSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345789999998864 35788999999999999999998654
No 185
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.24 E-value=31 Score=35.47 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC---C--CcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS---D--GSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~---~--G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. .++++.++.. + ++++.+|.||+++..
T Consensus 229 gV~i~~~~~V~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 229 GMKFKLGSKVTGATA-GADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred CCEEEECcEEEEEEE-cCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 557999999999987 6666665432 2 357899999999764
No 186
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=49.08 E-value=29 Score=35.26 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=32.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC-Cc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD-GS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~-G~--~~~ad~VIvTvP~~ 131 (412)
+.+++++++|++|+. ++..|.+...+ ++ ++.+|++|+|+=..
T Consensus 72 ~i~v~~~~~V~~Id~-~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAIND-ERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEEC-CCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 446889999999998 77778877643 23 35889999998653
No 187
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=49.06 E-value=16 Score=41.56 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
++.++||.|||...+ +.++.-|+..|++||..|...|....
T Consensus 718 Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 718 TNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345789999999864 46889999999999999999998653
No 188
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.88 E-value=33 Score=34.73 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|+++++|++|.. +. |.+++|+++.+|.||+|+..
T Consensus 242 gV~v~~~~~v~~v~~---~~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 242 GVDIRTKTAVKEVLD---KE--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCEEEeCCeEEEEeC---CE--EEECCCCEEEccEEEEccCC
Confidence 568999999999975 23 55778989999999999763
No 189
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=48.52 E-value=16 Score=38.18 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=32.3
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
+.|+||.|||.+...+ ..+.-|+..|..||..|.+++.+
T Consensus 476 s~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHhh
Confidence 4579999999987633 56778999999999999988754
No 190
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=48.13 E-value=30 Score=38.59 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. .. -.|++.+|+++.+|++|+|+=.
T Consensus 73 gI~~~~g~~V~~Id~-~~--~~V~~~~G~~i~yD~LVIATGs 111 (847)
T PRK14989 73 GIKVLVGERAITINR-QE--KVIHSSAGRTVFYDKLIMATGS 111 (847)
T ss_pred CCEEEcCCEEEEEeC-CC--cEEEECCCcEEECCEEEECCCC
Confidence 457899999999987 43 3566778889999999999875
No 191
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=47.79 E-value=36 Score=37.99 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCcEEcCCeEEEEEecCC--CcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQ--NGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~--~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+-+|++++.|++|.. ++ ....|++.+|+++.+|.||+++...
T Consensus 201 GV~v~~~~~v~~I~~-~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 201 GVRVHTSKNTLEIVQ-EGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred CCEEEcCCeEEEEEe-cCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 568999999999976 32 2356778899999999999998753
No 192
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.68 E-value=14 Score=41.65 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
++.++||.|||...+ ..++.-|+..|++||..|..+|.-.
T Consensus 590 Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 590 TSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred cCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345799999999865 3578999999999999999988743
No 193
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=47.44 E-value=37 Score=35.36 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCcEEcCCeEEEEEecCCCc---EEEEeCCCc--EEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNG---AAVSCSDGS--VYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~---V~V~~~~G~--~~~ad~VIvTvP 129 (412)
+.+|+++++|++|.. ++++ |.+...+|+ ++.|+.||+|+=
T Consensus 204 gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 204 KIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred CCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 568999999999987 5654 344445543 588999999985
No 194
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=47.43 E-value=11 Score=37.56 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=29.2
Q ss_pred CceEEEecccccCc-Ccc--cchhhhhccHHHHHHHHHHH
Q psy10795 341 RPVLLFAGEATSPH-HYG--TVNGAVESGARETANAIVYL 377 (412)
Q Consensus 341 ~~~l~fAGe~t~~~-~~g--~~eGA~~SG~raA~~i~~~l 377 (412)
.|.||||||-..-+ |-| -+.-|+.||..|++.+.+.+
T Consensus 368 vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 368 VPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred CCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 36899999998765 223 47889999999999887754
No 195
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=47.35 E-value=31 Score=36.27 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEe---CCC--cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSC---SDG--SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~---~~G--~~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|.. ++++|. |++ .+| .++.||+||.|+-+..
T Consensus 163 Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 163 GAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 788999999999998 666543 433 233 3689999999987653
No 196
>KOG1399|consensus
Probab=46.84 E-value=32 Score=35.31 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCcEEcCCeEEEEEecCC-CcEEEEeCCC----cEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NGAAVSCSDG----SVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~V~V~~~~G----~~~~ad~VIvTvP~~ 131 (412)
...|++++.|.++.. .+ +.|.|.+.+. +...+|.|||++-..
T Consensus 106 ~~~i~f~~~v~~v~~-~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 106 LKMINFNTEVVRVDS-IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred hhheEecccEEEEee-ccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 457999999999998 66 7999988654 367899999998776
No 197
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=46.76 E-value=25 Score=34.58 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCceEEEecccccCcC---cccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 340 GRPVLLFAGEATSPHH---YGTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~---~g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
+.++||.+||.+.... +-...-|+..|..+|+.|...+..+.
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 3478999999996432 22456699999999999999887654
No 198
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=45.97 E-value=39 Score=35.23 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=32.3
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEe---CCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSC---SDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~---~~G~--~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|.. .+++|. |++ .+|+ ++.|++||.|+-+..
T Consensus 142 Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 142 GARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 788999999999998 666542 333 2343 689999999987653
No 199
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=45.69 E-value=21 Score=37.27 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
++.|+||.|||.++..+ ..+.-|+.+|..||..+.+.|.+..
T Consensus 474 Ts~p~IyAaGDv~~~~~-k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 474 TSVPGVFAAGDCTTVPY-KQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred CCCCCEEECccccCCCC-CEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 34579999999998643 5589999999999999999887653
No 200
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=45.64 E-value=18 Score=37.17 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
+.++||.|||.... +..+.-|+..|..||..|...|.
T Consensus 430 ~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 34689999999865 24678899999999999998764
No 201
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=45.55 E-value=22 Score=35.94 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCceEEEecccccCcC----cccchhhhhccHHHHHHHHHHHHhcch
Q psy10795 338 REGRPVLLFAGEATSPHH----YGTVNGAVESGARETANAIVYLRREGF 382 (412)
Q Consensus 338 ~~~~~~l~fAGe~t~~~~----~g~~eGA~~SG~raA~~i~~~l~~~~~ 382 (412)
..+.++||-+||-....+ +++.+.|...|.-+|+.|...+..+..
T Consensus 288 ~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l 336 (405)
T COG1252 288 VPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPL 336 (405)
T ss_pred cCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344579999999887654 799999999999999999999988543
No 202
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.28 E-value=39 Score=34.77 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=31.2
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCC--C--cEEEeCEEEEeCCh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSD--G--SVYTAYKIIITVPL 130 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~--G--~~~~ad~VIvTvP~ 130 (412)
-+|++++.|++|+. .++++.|++.+ | +++.+|.||+++..
T Consensus 229 v~i~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 229 FNIMLETKVTAVEA-KEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred eEEEcCCEEEEEEE-cCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 46899999999987 66777776543 2 36899999999765
No 203
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=45.28 E-value=35 Score=34.27 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.0
Q ss_pred cCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCCh
Q psy10795 94 YKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 94 ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~ 130 (412)
....|+.|.. +++.| -|.+.+|..+.+|.||+|+-.
T Consensus 114 ~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 114 IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4678999988 66665 588999999999999999877
No 204
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=44.79 E-value=47 Score=33.98 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCC-cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDG-SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G-~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. .++.+.++..++ .++.+|.||+|+..
T Consensus 225 GI~i~~~~~V~~i~~-~~~~v~~~~~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 225 GVKIFTGAALKGLNS-YKKQALFEYEGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred CCEEEECCEEEEEEE-cCCEEEEEECCceEEEEeCEEEEecCC
Confidence 568999999999987 555566654322 36899999999864
No 205
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=44.52 E-value=19 Score=33.90 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=29.4
Q ss_pred ceEEEecccccCcC----cc-cchhhhhccHHHHHHHHHHHHh
Q psy10795 342 PVLLFAGEATSPHH----YG-TVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 342 ~~l~fAGe~t~~~~----~g-~~eGA~~SG~raA~~i~~~l~~ 379 (412)
|.||.||=+.+..+ .| +--|=+.||++||+.|++.|+.
T Consensus 214 ~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 214 PGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 68999998887543 23 3445577999999999999875
No 206
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=43.38 E-value=22 Score=32.79 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=29.9
Q ss_pred CceEEEecccccCcC----cc-cchhhhhccHHHHHHHHHHHHh
Q psy10795 341 RPVLLFAGEATSPHH----YG-TVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~----~g-~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.|++|+||=+.+..+ .| +--|=+.||++||+.|++.|+.
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 479999999887532 23 3455678999999999998864
No 207
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.16 E-value=24 Score=34.69 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
..++||.|||.+.. +..+.-|+..|..||..|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 34689999998864 36789999999999999998874
No 208
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=43.15 E-value=37 Score=34.08 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=31.8
Q ss_pred ceEEEecccccCcCc---ccchhhhhccHHHHHHHHHHHHh
Q psy10795 342 PVLLFAGEATSPHHY---GTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~---g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
+++.++||+-+...+ +-|.-|+.||..||+.|.+.+..
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 389999999886544 56888999999999999988764
No 209
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=42.84 E-value=42 Score=32.49 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 338 REGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 338 ~~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
.++.|.||-|||-+...+. -+.-|.-.|..||..+.+++...
T Consensus 262 ~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 262 ETSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred ccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhhc
Confidence 3445799999999998653 68899999999999999887653
No 210
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=41.74 E-value=51 Score=35.01 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=30.4
Q ss_pred CCcEEcCCeEEEEEecCCCcE---EEEeCCCc-EEEe-CEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA---AVSCSDGS-VYTA-YKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V---~V~~~~G~-~~~a-d~VIvTvP~~ 131 (412)
+.+|+++++|++|.. ++++| .+...++. ++.| +.||+|+-..
T Consensus 231 Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 231 GVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred CCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 678999999999987 55554 34444443 4788 9999997543
No 211
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=41.51 E-value=52 Score=33.46 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|+. . .|++.+|+++.+|.||++++.
T Consensus 203 gI~i~~~~~v~~i~~---~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 203 EIPYRLNEEIDAING---N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred CCEEEECCeEEEEeC---C--EEEECCCCEEEeCEEEECcCC
Confidence 567999999999964 2 455667888999999999765
No 212
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=41.39 E-value=26 Score=36.96 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
+.++||.|||.+.... ..+.-|+..|..||..|..+|...
T Consensus 272 s~p~IyAaGDv~~~~~-~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 272 NVPGVYAAGDLRPKEL-RQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCCEEEceeccCCCc-chheeHHhhHHHHHHHHHHHHHhh
Confidence 4578999999875432 446789999999999999887653
No 213
>PLN02697 lycopene epsilon cyclase
Probab=41.33 E-value=49 Score=34.74 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.++ +++.|++|.. .++++. +++.+|.++.|+.||.|.-...
T Consensus 206 GV~~-~~~~V~~I~~-~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 206 GVSY-LSSKVDRITE-ASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CCEE-EeeEEEEEEE-cCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4455 7889999998 667765 4567788999999999987755
No 214
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=40.83 E-value=49 Score=32.53 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=33.1
Q ss_pred CcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 90 NKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
..+..+++|..+.. ..+.+.|.|.+|+ +.||+||+|+=...
T Consensus 172 ~~~~~~~~~~~~~~-~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 172 VIIEGGTPVTSLER-DGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred eEEEccceEEEEEe-cCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 46777999999998 3345788898985 99999999987654
No 215
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=39.96 E-value=48 Score=35.93 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=36.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhhhhcCcccccCCCc
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLP 145 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~L~~~~i~f~P~Lp 145 (412)
+.+++.+.+|+.|.. .. =.|+++.|.++..|.+|+|+-. ..|.||.|
T Consensus 73 ~i~L~~~~~v~~idr-~~--k~V~t~~g~~~~YDkLilATGS-------~pfi~PiP 119 (793)
T COG1251 73 GITLYTGEKVIQIDR-AN--KVVTTDAGRTVSYDKLIIATGS-------YPFILPIP 119 (793)
T ss_pred CcEEEcCCeeEEecc-Cc--ceEEccCCcEeecceeEEecCc-------cccccCCC
Confidence 557899999999987 33 3578889999999999999654 35666666
No 216
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=39.92 E-value=45 Score=34.08 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEe--CCC--cEEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSC--SDG--SVYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~--~~G--~~~~ad~VIvTvP 129 (412)
+.+|+++++|++|.. ++++|. |.+ .+| ..+.|+.||+|+-
T Consensus 145 gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 145 GVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred CCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 678999999999998 666653 333 334 3578999999985
No 217
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=39.47 E-value=27 Score=35.13 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 341 RPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
.++|||||+-+-.+ |+.|.|. +|.-|+..+...++.+
T Consensus 355 ~~~lf~AGqi~G~~--Gy~eaaa-~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 355 IPGLFFAGQINGTE--GYEEAAA-QGLIAGINAARRLQGK 391 (392)
T ss_dssp SBTEEE-GGGGTB---SHHHHHH-HHHHHHHHHHHHHTTS
T ss_pred CCCceECCCCcchh--HHHHHHH-HHHHHHHHHHHHHcCC
Confidence 36899999999773 6677665 8999999888877654
No 218
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=39.26 E-value=34 Score=36.52 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=42.7
Q ss_pred CceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc-----chhhHHHHhHHhhhhhcC
Q psy10795 341 RPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE-----GFFEKLVNIAVKELEHKG 398 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~-----~~~~~~~~~~~~~~~~~~ 398 (412)
.++|||||+-...+ | .+-|..+|.-|+-.+...+.+. .+.+.++++-|.-|-.||
T Consensus 357 ~~gLf~AGqi~Gt~--G-y~eAaa~Gl~Ag~naa~~~~~~~~~~l~r~~~yiGvliddlvtkg 416 (617)
T TIGR00136 357 IQGLFFAGQINGTT--G-YEEAAAQGLMAGINAALKLQNKEPFILKRSEAYIGVLIDDLVTKG 416 (617)
T ss_pred CCCeEEccccCCcc--h-HHHHHHHHHHHHHHHHHHhcCCCCCCCCcccchHhHHHHHHHhcC
Confidence 36899999966542 5 4578889999998888877765 334778899999888888
No 219
>KOG1335|consensus
Probab=39.07 E-value=57 Score=32.69 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=33.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC---C--cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD---G--SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~---G--~~~~ad~VIvTvP~~~ 132 (412)
+-+.+|+++|+.++.+.++.|.|+.++ | ++++||.+.|++--.-
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 567899999999999444477776543 3 4689999999975443
No 220
>PTZ00058 glutathione reductase; Provisional
Probab=38.87 E-value=65 Score=34.12 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCcEEcCCeEEEEEecCC-CcEEEEeCCC-cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NGAAVSCSDG-SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~V~V~~~~G-~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|.+|.. .+ +++.+...++ +++.+|.||+++..
T Consensus 292 GV~i~~~~~V~~I~~-~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 292 NINIITHANVEEIEK-VKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred CCEEEeCCEEEEEEe-cCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 567999999999987 43 3566655444 57999999999753
No 221
>PRK06175 L-aspartate oxidase; Provisional
Probab=38.74 E-value=55 Score=33.28 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=29.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EE-eCCCc--EEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VS-CSDGS--VYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~-~~~G~--~~~ad~VIvTvP~ 130 (412)
+.+|+++++|+.|.. ++++|. |. ..+|. ++.|+.||+|+=-
T Consensus 143 gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 143 NITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred CCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 558999999999987 555442 22 23443 5799999999764
No 222
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=37.70 E-value=54 Score=32.67 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=31.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeC-CCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCS-DGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~-~G~--~~~ad~VIvTvP~~~ 132 (412)
+..|++++.+++|...+++.+.|+.. +|+ +++||.||-|=-...
T Consensus 117 g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 117 GLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred CCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 55799999988886524556677764 775 689999998865543
No 223
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=37.58 E-value=34 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCcEEcCCeEEEEEecCCCc-----EEE---EeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG-----AAV---SCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~-----V~V---~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|.+|.. .... +.+ .+.++.++.+|+||+|+-.
T Consensus 72 ~v~~~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp THEEEHHHTEEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred eEEEeeccccccccc-cccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 346889999999988 5553 233 2345668999999999884
No 224
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=37.40 E-value=18 Score=40.86 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
+.++||.|||.... ++++.-|+..|.+||..|+......
T Consensus 804 s~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~~~~~ 842 (1012)
T TIGR03315 804 NITNVFVIGDANRG--PATIVEAIADGRKAANAILSREGLN 842 (1012)
T ss_pred CCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhccccCC
Confidence 45789999998753 4789999999999999998654433
No 225
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=36.91 E-value=70 Score=32.61 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=29.5
Q ss_pred CcEEcCCeEEEEEecCCC-cEEEEeCCC--cEEEeCEEEEeCCh
Q psy10795 90 NKILYKKEVNKIDWEYQN-GAAVSCSDG--SVYTAYKIIITVPL 130 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~-~V~V~~~~G--~~~~ad~VIvTvP~ 130 (412)
-+|++++.|++|+. .++ +++++..+| .++.+|.||+++..
T Consensus 224 I~i~~~~~v~~i~~-~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 224 FKIKLGAKVTSVEK-SGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred cEEEcCCEEEEEEE-cCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 36889999999987 443 566644333 46899999998654
No 226
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=36.76 E-value=36 Score=34.44 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=33.9
Q ss_pred CCceEEEecccccCc---CcccchhhhhccHHHHHHHHHHHHhcc
Q psy10795 340 GRPVLLFAGEATSPH---HYGTVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~---~~g~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
+.++||-+||..+.. .+.+..-|+..|..+|+.|...+..+.
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999998752 345778899999999999999986543
No 227
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=36.57 E-value=22 Score=36.03 Aligned_cols=31 Identities=32% Similarity=0.300 Sum_probs=23.8
Q ss_pred CceEEEecccccCcCc--c-cchhhhhccHHHHH
Q psy10795 341 RPVLLFAGEATSPHHY--G-TVNGAVESGARETA 371 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~~--g-~~eGA~~SG~raA~ 371 (412)
.|+||||||-+..+.+ | -++-|+.||..|++
T Consensus 375 ~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 375 VPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp STTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 3689999999976421 3 49999999999986
No 228
>PLN02546 glutathione reductase
Probab=35.93 E-value=73 Score=33.72 Aligned_cols=42 Identities=7% Similarity=0.032 Sum_probs=30.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|....++.+.|.+.+++...+|.||+++..
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence 567999999999986234446676666644458999999764
No 229
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=34.94 E-value=60 Score=32.26 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=28.9
Q ss_pred EEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 92 I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
|++++.|++|.. ++|++ .+|++++||.||-|.+..
T Consensus 103 i~~~~~V~~v~~---~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 103 VILGRKAVGLDA---DGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred EEecCEEEEEeC---CEEEE--CCCCEEEeeEEEECCCCC
Confidence 888999999943 44665 678899999999999875
No 230
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=34.50 E-value=30 Score=32.48 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=28.6
Q ss_pred CceEEEecccccCcC----cc-cchhhhhccHHHHHHHHHHHH
Q psy10795 341 RPVLLFAGEATSPHH----YG-TVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~----~g-~~eGA~~SG~raA~~i~~~l~ 378 (412)
.|.||.||=+.+..+ .| +--|=+.||++||+.|++.|+
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 478999998887532 23 334556799999999999874
No 231
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=34.30 E-value=61 Score=32.41 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=29.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEE---EE-eCCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA---VS-CSDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~---V~-~~~G~--~~~ad~VIvTvP~~~ 132 (412)
+.+|+++++|++|.. ++++|+ +. ..+|+ .+.|+.||+|+---.
T Consensus 155 gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 155 GVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp TEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred CeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 568999999999999 666652 33 24565 468999999986543
No 232
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=33.28 E-value=80 Score=31.57 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=32.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEe-CCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSC-SDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~-~~G~~~~ad~VIvTvP~ 130 (412)
|.+++.++.|+.+.+ .++++.+.. .++.++.|+.||.|-=.
T Consensus 109 Gae~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 109 GAELYPGTRVTGVIR-EDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred CCEEEeceEEEEEEE-eCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 789999999999999 676665544 34468899999999853
No 233
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=33.16 E-value=81 Score=33.38 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=29.6
Q ss_pred ceEEEecccccCc----Cc--c-cchhhhhccHHHHHHHHHHHHhc
Q psy10795 342 PVLLFAGEATSPH----HY--G-TVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 342 ~~l~fAGe~t~~~----~~--g-~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
|+||-||+.+... ++ | ++-.|+-+|+.|++.+.+..+.+
T Consensus 525 pGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 570 (574)
T PRK12842 525 AGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGR 570 (574)
T ss_pred CCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhccc
Confidence 5899999987532 22 2 56778999999999998876554
No 234
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=33.11 E-value=82 Score=32.31 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCCCc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSDGS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~G~--~~~ad~VIvTvP~~ 131 (412)
+-+|++++.|++|....++++. +.+.+|+ ++.+|.||+++...
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 5689999999999741134554 3445663 68999999998763
No 235
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=33.00 E-value=35 Score=34.76 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=29.2
Q ss_pred CceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 341 RPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
.++|||||+-+..+ |+. =|..||..|+..+...+..+
T Consensus 330 ~~~l~~AGqi~g~~--Gy~-ea~a~G~~Ag~n~~~~~~g~ 366 (436)
T PRK05335 330 RPNLFFAGQITGVE--GYV-ESAASGLLAGINAARLALGK 366 (436)
T ss_pred CCCEEeeeeecCch--HHH-HHHHHHHHHHHHHHHHhcCC
Confidence 36899999999764 444 67889999999988887654
No 236
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=47 Score=32.18 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+.++.. ..|.+++. .++.+.|++.+|. ++|++||+|+-..
T Consensus 75 ~~~~~~-~~v~~v~~-~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 75 GVEIVE-DEVEKVEL-EGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred CeEEEE-EEEEEEee-cCceEEEEECCCe-EEEeEEEECcCCc
Confidence 334444 67888877 4447899999996 9999999998774
No 237
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=32.43 E-value=64 Score=33.05 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=31.1
Q ss_pred ceEEEecccccCcCc---ccchhhhhccHHHHHHHHHHHHh
Q psy10795 342 PVLLFAGEATSPHHY---GTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~---g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
+++.++||+-+...+ +-|.-|+.||..||+.|.+.+..
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 389999999875432 46888999999999999988754
No 238
>PRK10262 thioredoxin reductase; Provisional
Probab=30.93 E-value=89 Score=30.03 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCC----C--cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSD----G--SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~----G--~~~~ad~VIvTvP~ 130 (412)
+-++++++.|++|.. +++++ .|++.+ + +++.+|.||+++..
T Consensus 199 gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 199 NIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred CeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 457889999999986 54433 233322 1 36899999999754
No 239
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=30.85 E-value=74 Score=34.02 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.8
Q ss_pred cEEcCCeEEEEEecCCCcEE-EEeCCCcEEEeCEEEEeCCh
Q psy10795 91 KILYKKEVNKIDWEYQNGAA-VSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 91 ~I~ln~~V~~I~~~~~~~V~-V~~~~G~~~~ad~VIvTvP~ 130 (412)
.| +...|+.|.. ++++|. |.+.+|..+.|+.||+|+=.
T Consensus 117 ~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 117 DL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred EE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 45 5678898887 666664 88889999999999999886
No 240
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=30.60 E-value=98 Score=33.51 Aligned_cols=41 Identities=5% Similarity=0.051 Sum_probs=29.6
Q ss_pred CCcEEcCCeEEEEEecCCCc--EEEEeCC-------C--------cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG--AAVSCSD-------G--------SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~--V~V~~~~-------G--------~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|+. .++. |.|++.+ + +++++|.||+|+-.
T Consensus 368 GV~I~~~~~V~~I~~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr 425 (659)
T PTZ00153 368 PVRVHLNTLIEYVRA-GKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR 425 (659)
T ss_pred CcEEEcCCEEEEEEe-cCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc
Confidence 457999999999987 5433 6665421 1 26899999999754
No 241
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=30.38 E-value=98 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCCCcEEEeCEEEEe
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSDGSVYTAYKIIIT 127 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~G~~~~ad~VIvT 127 (412)
|+...||++|.+|..+.++.+. |.+ +|+++.|++||+.
T Consensus 246 GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 246 GGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp T-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred CcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 7889999999999983333443 444 8889999999975
No 242
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=30.21 E-value=79 Score=31.58 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=31.7
Q ss_pred ceEEEecccccCc---CcccchhhhhccHHHHHHHHHHHHhc
Q psy10795 342 PVLLFAGEATSPH---HYGTVNGAVESGARETANAIVYLRRE 380 (412)
Q Consensus 342 ~~l~fAGe~t~~~---~~g~~eGA~~SG~raA~~i~~~l~~~ 380 (412)
+++.++||+-... .-+-|+-|+.||..||+.|++.+...
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~ 310 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG 310 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3899999998743 33568889999999999999987653
No 243
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.60 E-value=39 Score=38.31 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~ 378 (412)
+.++||.|||.... ++++.-|+..|+.||..|+..+.
T Consensus 806 s~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 806 SLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 44799999998753 46899999999999999998765
No 244
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=28.53 E-value=27 Score=35.13 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=23.2
Q ss_pred ceEEEecccccCcC-c-c-cchhhhhccHHHH
Q psy10795 342 PVLLFAGEATSPHH-Y-G-TVNGAVESGARET 370 (412)
Q Consensus 342 ~~l~fAGe~t~~~~-~-g-~~eGA~~SG~raA 370 (412)
|+||||||-+..+. . | -++-|+.||..|+
T Consensus 368 ~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 368 PGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 68999999997642 2 2 5889999999886
No 245
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=28.28 E-value=58 Score=32.34 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=31.1
Q ss_pred eEEEecccccCcCc---ccchhhhhccHHHHHHHHHHHHh
Q psy10795 343 VLLFAGEATSPHHY---GTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 343 ~l~fAGe~t~~~~~---g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
+++++||+-+...+ +-|.=|+.||..||+.|.+.+..
T Consensus 265 ~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 265 RAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999886544 45778999999999999988764
No 246
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=27.99 E-value=61 Score=32.92 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=32.1
Q ss_pred hHHHHhhcCCccccceEEEEcCCCCccCCCcceEeeecc
Q psy10795 5 ALGTLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQ 43 (412)
Q Consensus 5 ~~~~ai~~lgfgt~~Kifl~f~~~~w~~~~~~~~~~W~~ 43 (412)
.+.++|+++.++.+.++.+.|.+++|..+..++.+++..
T Consensus 290 ~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~ 328 (462)
T TIGR00562 290 SASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISR 328 (462)
T ss_pred HHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccC
Confidence 577889999999999999999999997655566666553
No 247
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.98 E-value=57 Score=32.87 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=33.8
Q ss_pred eeeecCCcCCCCCCcEEcCCeEEEEEecCCC-cEE--EEeCCCcEEEeCEEEEeCCh
Q psy10795 77 TLLVSGQTPVDLSNKILYKKEVNKIDWEYQN-GAA--VSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 77 vl~~~~~~~~~~~~~I~ln~~V~~I~~~~~~-~V~--V~~~~G~~~~ad~VIvTvP~ 130 (412)
.-|++...| .+++|++|+.|...+.+ .+. +.+.++++++|+.+|+++-.
T Consensus 104 ~~Waa~~l~-----~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 104 CQWAASQLP-----SLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred HHHHHhhCC-----ccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 345554444 48999999977432223 344 67788889999999999754
No 248
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=27.66 E-value=1.2e+02 Score=31.89 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=27.8
Q ss_pred CcEEcCCeEEEEEecCCC---cE---EEEeC-CCc--EEEeCEEEEeCC
Q psy10795 90 NKILYKKEVNKIDWEYQN---GA---AVSCS-DGS--VYTAYKIIITVP 129 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~---~V---~V~~~-~G~--~~~ad~VIvTvP 129 (412)
-+|++|+.|++|.. +++ +| .+.+. +|+ ++.|+.||+|.-
T Consensus 229 ~~l~~~a~v~~i~~-d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAag 276 (544)
T TIGR02462 229 FTLLTNHRCTRLVR-NETNESEIEAALVRDLLSGDRFEIKADVYVLACG 276 (544)
T ss_pred EEEEcCCEEEEEEe-CCCCCceeEEEEEEECCCCcEEEEECCEEEEccC
Confidence 47999999999998 432 34 33333 454 478999999875
No 249
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=27.33 E-value=1.1e+02 Score=28.79 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCcEEcCCeEEEEEec-CCCc---EEEEeCCCc----EEEeCEEEEeCC
Q psy10795 89 SNKILYKKEVNKIDWE-YQNG---AAVSCSDGS----VYTAYKIIITVP 129 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~-~~~~---V~V~~~~G~----~~~ad~VIvTvP 129 (412)
+-+|+.++.|++|..+ ++++ |.+...++. .+.++.|||+.-
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAG 255 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAG 255 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccC
Confidence 4579999999999652 2333 455555664 467899999864
No 250
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=27.30 E-value=35 Score=15.95 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=5.2
Q ss_pred CCCCccCC
Q psy10795 26 PAKWWKDG 33 (412)
Q Consensus 26 ~~~~w~~~ 33 (412)
++|||+..
T Consensus 1 ekpfw~pp 8 (12)
T PF08248_consen 1 EKPFWPPP 8 (12)
T ss_pred CCccCCCC
Confidence 46788654
No 251
>KOG1336|consensus
Probab=26.60 E-value=99 Score=31.75 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
+.++++++.|++|+. .. =+|.+.+|+++.++++|+|+-.+.
T Consensus 141 gIe~~~~t~v~~~D~-~~--K~l~~~~Ge~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 141 GIELILGTSVVKADL-AS--KTLVLGNGETLKYSKLIIATGSSA 181 (478)
T ss_pred CceEEEcceeEEeec-cc--cEEEeCCCceeecceEEEeecCcc
Confidence 457899999999987 43 367889999999999999987743
No 252
>KOG1336|consensus
Probab=26.52 E-value=89 Score=32.06 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=35.1
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~ 131 (412)
+-++.+++.|.+++-+.++.| .|...+|+++.||-||+-+-..
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 567999999999998444444 6889999999999999986553
No 253
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=26.50 E-value=51 Score=34.84 Aligned_cols=42 Identities=5% Similarity=-0.005 Sum_probs=30.4
Q ss_pred CCcEEcCCeEEEEEecCCCcEE---E-EeCCCc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA---V-SCSDGS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~---V-~~~~G~--~~~ad~VIvTvP~~ 131 (412)
+.+|..+++|++|.. +++.|. + ...+|+ .+.|+.||+|+---
T Consensus 133 gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 133 DTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred CCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 558999999999987 555542 2 234564 46899999997653
No 254
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=26.28 E-value=1.2e+02 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.130 Sum_probs=32.9
Q ss_pred CCcEEcCCeEEEEEecCCCcEE---EEeCCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA---VSCSDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~---V~~~~G~~~~ad~VIvTvP~ 130 (412)
+-++++++.|.+|.. ..+.+. +...++..+.+|.+++++|.
T Consensus 192 gi~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 192 GVELLLGTKVVGVEG-KGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred CcEEEeCCceEEEEc-ccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 446899999999998 555443 57778889999999999876
No 255
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=25.93 E-value=98 Score=23.97 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=26.9
Q ss_pred cEEcCCeEEEEEecCCCcEEEEeCCCcE----------------EEeCEEEEeCChhhhhcCcc
Q psy10795 91 KILYKKEVNKIDWEYQNGAAVSCSDGSV----------------YTAYKIIITVPLGVLKSKLI 138 (412)
Q Consensus 91 ~I~ln~~V~~I~~~~~~~V~V~~~~G~~----------------~~ad~VIvTvP~~~L~~~~i 138 (412)
.|.+...|+++-. ++.+.|.++||.+ ...|.|.|.+.+..|.+..|
T Consensus 6 ~ie~~G~V~e~Lp--~~~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~spYDltkGRI 67 (87)
T PRK12442 6 LIELDGIVDEVLP--DSRFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLTKGRI 67 (87)
T ss_pred eEEEEEEEEEECC--CCEEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEECcccCCceeE
Confidence 3555555555542 4455666665531 35688888877766666555
No 256
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=25.34 E-value=1.2e+02 Score=31.94 Aligned_cols=42 Identities=5% Similarity=-0.010 Sum_probs=31.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEE---E-EeCCCc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA---V-SCSDGS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~---V-~~~~G~--~~~ad~VIvTvP~~ 131 (412)
+.+|++++.|++|.. ++++|. + ...+|+ .+.|+.||+|+=-.
T Consensus 143 gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 143 GVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred CCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 568999999999987 566553 2 234664 57899999998753
No 257
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=25.19 E-value=1e+02 Score=31.86 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=30.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEeCC-C--cEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSCSD-G--SVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~~~-G--~~~~ad~VIvTvP~~~ 132 (412)
+.+|+.++.|++|.. +++.|. |...+ + ..+.|+.||+|+=-..
T Consensus 143 gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 143 NIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred CcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 457999999999987 555554 43322 3 3679999999986643
No 258
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=24.98 E-value=99 Score=31.26 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCCCc-EEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGS-VYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~G~-~~~ad~VIvTvP~ 130 (412)
|-+|++|++|++|+. ++| ++.+|+ ++.++.+|=|.-.
T Consensus 223 GV~v~l~~~Vt~v~~---~~v--~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 223 GVEVLLGTPVTEVTP---DGV--TLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CCEEEcCCceEEECC---CcE--EEccCCeeEecCEEEEcCCC
Confidence 678999999999976 455 445555 5999999998654
No 259
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=24.93 E-value=1.2e+02 Score=31.26 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EE-----eCCC---------cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VS-----CSDG---------SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~-----~~~G---------~~~~ad~VIvTvP~ 130 (412)
+.++++++.|++|.. .+++|+ |+ ..+| .++.+|.||+|+-.
T Consensus 343 GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 343 GVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred CCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 567999999999975 455553 32 2222 46899999999753
No 260
>KOG2415|consensus
Probab=24.84 E-value=78 Score=32.14 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=45.6
Q ss_pred ceEEEecccccCcCcccc--------hhhhhccHHHHHHHHHHHHhcc-----------hhhHHHHhH-HhhhhhcCcee
Q psy10795 342 PVLLFAGEATSPHHYGTV--------NGAVESGARETANAIVYLRREG-----------FFEKLVNIA-VKELEHKGNQV 401 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~g~~--------eGA~~SG~raA~~i~~~l~~~~-----------~~~~~~~~~-~~~~~~~~~~~ 401 (412)
|.+.|-|-..-+-..|+| |-|+.||..||+.|.+.+.... +.+++-+.+ .+||-.--|-+
T Consensus 379 Pkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNir 458 (621)
T KOG2415|consen 379 PKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIR 458 (621)
T ss_pred cccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccC
Confidence 688888887755444443 7899999999999999986542 233444433 46776666766
Q ss_pred cceeeecc
Q psy10795 402 GRILNLFG 409 (412)
Q Consensus 402 ~~~~~~~~ 409 (412)
-.|.+..|
T Consensus 459 Psf~~~lG 466 (621)
T KOG2415|consen 459 PSFHGKLG 466 (621)
T ss_pred cccccccc
Confidence 66654433
No 261
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.45 E-value=64 Score=34.41 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=28.5
Q ss_pred ceEEEecccccCcCcc-------cchhhhhccHHHHHHHHHHHH
Q psy10795 342 PVLLFAGEATSPHHYG-------TVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~g-------~~eGA~~SG~raA~~i~~~l~ 378 (412)
|+||-|||.++...+| .+-.|+-.|++|++.+.+.++
T Consensus 386 ~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 386 PGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 5899999987632223 677788999999999887654
No 262
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.28 E-value=1.2e+02 Score=30.69 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.9
Q ss_pred CcEEcCCeEEEEEecCCCc-EEEEeC---CC--cEEEeCEEEEeCChh
Q psy10795 90 NKILYKKEVNKIDWEYQNG-AAVSCS---DG--SVYTAYKIIITVPLG 131 (412)
Q Consensus 90 ~~I~ln~~V~~I~~~~~~~-V~V~~~---~G--~~~~ad~VIvTvP~~ 131 (412)
.+++-++.|++++. .+++ +.+++. .| .+++.|.||+|+--.
T Consensus 293 v~l~~~~ev~~~~~-~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 293 VRLLSLSEVQSVEP-AGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeeccccceeeeec-CCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 45777999999998 6655 877653 23 478999999997653
No 263
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=24.27 E-value=1.2e+02 Score=30.91 Aligned_cols=41 Identities=7% Similarity=-0.094 Sum_probs=29.0
Q ss_pred CCcEEcCCeEEEEEecCCCc---EEEEe-----------------CCCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNG---AAVSC-----------------SDGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~---V~V~~-----------------~~G~~~~ad~VIvTvP~ 130 (412)
+-+|++++.|++|.. ++++ |.+.. .++.++.+|.||+++..
T Consensus 325 GV~i~~~~~v~~i~~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 325 GVEFEWLAAPVEILG-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CCEEEecCCcEEEEe-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 567999999999986 5544 54431 12346899999999754
No 264
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.22 E-value=68 Score=34.05 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=28.2
Q ss_pred ceEEEecccccCcCcc-------cchhhhhccHHHHHHHHHHHH
Q psy10795 342 PVLLFAGEATSPHHYG-------TVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~g-------~~eGA~~SG~raA~~i~~~l~ 378 (412)
|+||-|||.++...+| .+-+|+-.|++|++.+.+..+
T Consensus 376 pGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 376 PGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 5899999987632223 566688899999999887764
No 265
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=24.10 E-value=1.3e+02 Score=30.74 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCcEEcCCeEEEEEecCCCcE-EEEeCCCcEEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGA-AVSCSDGSVYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V-~V~~~~G~~~~ad~VIvTvP~~~ 132 (412)
|.+++.++ |+.|....++.| .|++.+|++++||.||=|.-...
T Consensus 168 Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 168 GVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp T-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred CCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 55777775 777777233334 68899999999999999987743
No 266
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=23.70 E-value=1.2e+02 Score=30.08 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCcEEcCCeEEEEEecCCCcEEEEeCC------C--cEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAAVSCSD------G--SVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~V~~~~------G--~~~~ad~VIvTvP~ 130 (412)
+.+|+.+ .|++|.. +++++.|++.+ | .+++||.||.|-=.
T Consensus 106 G~~v~~~-~v~~v~~-~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 106 GAELIHG-LFLKLER-DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred CCEEEee-EEEEEEE-cCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 5577654 6999988 77888777653 2 36899999998764
No 267
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=23.18 E-value=1.4e+02 Score=32.11 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=30.4
Q ss_pred cEEcCCeEEEEEecCC---CcEEEEeC------CC--cEEEeCEEEEeCChh
Q psy10795 91 KILYKKEVNKIDWEYQ---NGAAVSCS------DG--SVYTAYKIIITVPLG 131 (412)
Q Consensus 91 ~I~ln~~V~~I~~~~~---~~V~V~~~------~G--~~~~ad~VIvTvP~~ 131 (412)
.+++++.|++++. ++ +.|+|+.. +| ++++||+||-|==..
T Consensus 159 ~v~~g~~v~~~~~-~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 159 EPDYGREFVDLEV-DEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGAR 209 (634)
T ss_pred EEEeCcEEEEEEE-CCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCc
Confidence 5789999999987 43 34777764 35 578999999986554
No 268
>PRK06116 glutathione reductase; Validated
Probab=23.04 E-value=70 Score=32.53 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCCceEEEecccccCcCcccchhhhhccHHHHHHHHH
Q psy10795 339 EGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375 (412)
Q Consensus 339 ~~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~ 375 (412)
++.|+||.+||.+.. +...+-|+..|..||+.|+.
T Consensus 293 Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 293 TNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 345799999998754 35688999999999999974
No 269
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.96 E-value=70 Score=33.87 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.3
Q ss_pred ceEEEecccccCcCcc-------cchhhhhccHHHHHHHHHHHHh
Q psy10795 342 PVLLFAGEATSPHHYG-------TVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~g-------~~eGA~~SG~raA~~i~~~l~~ 379 (412)
|+||-|||.++...+| .+-+|+-.|++|++.+.+.++.
T Consensus 361 pGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 361 VGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred CCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999987632223 6778899999999999877653
No 270
>PRK07121 hypothetical protein; Validated
Probab=22.78 E-value=1.7e+02 Score=30.21 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCcEEcCCeEEEEEecCC-CcEE-EEe-CCCc--EEEe-CEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQ-NGAA-VSC-SDGS--VYTA-YKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~-~~V~-V~~-~~G~--~~~a-d~VIvTvP~~ 131 (412)
+.+|+++++|++|.. ++ ++|. |.. .+|+ ++.| +.||+|+=--
T Consensus 191 gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 191 GVQIRYDTRATRLIV-DDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred CCEEEeCCEEEEEEE-CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 668999999999987 43 4442 333 2333 4778 9999998743
No 271
>PLN02661 Putative thiazole synthesis
Probab=22.70 E-value=72 Score=31.64 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred CceEEEecccccCcC----cc-cchhhhhccHHHHHHHHHHHHhcc
Q psy10795 341 RPVLLFAGEATSPHH----YG-TVNGAVESGARETANAIVYLRREG 381 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~----~g-~~eGA~~SG~raA~~i~~~l~~~~ 381 (412)
.|.||.+|=+.+..+ .| +--|=+.||++||+.|++.|+...
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~~~ 331 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPN 331 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHccch
Confidence 479999998887532 23 444557899999999999998543
No 272
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=22.49 E-value=1.6e+02 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=26.7
Q ss_pred ceEEEecccccCcC--cccchhhhhccHHHHHHHHH
Q psy10795 342 PVLLFAGEATSPHH--YGTVNGAVESGARETANAIV 375 (412)
Q Consensus 342 ~~l~fAGe~t~~~~--~g~~eGA~~SG~raA~~i~~ 375 (412)
-||-|.|--..... -=|||-+++||..|+-+++.
T Consensus 487 ~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 487 TNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred ceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 38999998776432 23899999999999988876
No 273
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.29 E-value=1.6e+02 Score=31.08 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEE-EEe-CCCc--EEEeC-EEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA-VSC-SDGS--VYTAY-KIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~-V~~-~~G~--~~~ad-~VIvTvP~ 130 (412)
+.+|+++++|++|.. ++++|. |.. .+|+ .+.|+ .||+|+.-
T Consensus 222 gv~v~~~t~v~~l~~-~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 222 GVPVLLNTPLTDLYV-EDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 568999999999998 666553 333 2443 46786 69996653
No 274
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=22.20 E-value=67 Score=36.53 Aligned_cols=36 Identities=22% Similarity=0.091 Sum_probs=30.3
Q ss_pred CceEEEecccccCcCcccchhhhhccHHHHHHHHHHHHh
Q psy10795 341 RPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379 (412)
Q Consensus 341 ~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~~l~~ 379 (412)
.++||.|||.+.. ..+..|+.+|..||..|+..+..
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999998854 45777999999999999988865
No 275
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=22.01 E-value=77 Score=34.12 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.4
Q ss_pred ceEEEecccccCcCcc-------cchhhhhccHHHHHHHHHHHH
Q psy10795 342 PVLLFAGEATSPHHYG-------TVNGAVESGARETANAIVYLR 378 (412)
Q Consensus 342 ~~l~fAGe~t~~~~~g-------~~eGA~~SG~raA~~i~~~l~ 378 (412)
|+||-|||.++...+| .+-.|+..|++|++.+.+.++
T Consensus 424 pGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 424 PGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 5899999987532223 677789999999999887654
No 276
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.88 E-value=1.6e+02 Score=31.28 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCcEEcCCeEEEEEecCCCcEE----EEeCCCc--EEEeCEEEEeCChh
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA----VSCSDGS--VYTAYKIIITVPLG 131 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~----V~~~~G~--~~~ad~VIvTvP~~ 131 (412)
+.+|..++.|++|.. +++.|. +...+|+ .+.|+.||+|+=-.
T Consensus 149 gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 149 GVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred CCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 568999999999987 555542 2344664 57899999997653
No 277
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=21.57 E-value=1.6e+02 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCcEEcCCeEEEEEecCCCcEE----EEeCCCc--EEEeCEEEEeC
Q psy10795 89 SNKILYKKEVNKIDWEYQNGAA----VSCSDGS--VYTAYKIIITV 128 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~~V~----V~~~~G~--~~~ad~VIvTv 128 (412)
+.+|+.++.|+.|.. ++++|. +...+|+ .+.|+.||+|+
T Consensus 147 gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILAT 191 (608)
T PRK06854 147 GDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVAT 191 (608)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECC
No 278
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=21.33 E-value=1.9e+02 Score=31.06 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=31.4
Q ss_pred CCcEEcCCeEEEEEecC-CCcEE-EEe---CCCc--EEEeCEEEEeCChhh
Q psy10795 89 SNKILYKKEVNKIDWEY-QNGAA-VSC---SDGS--VYTAYKIIITVPLGV 132 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~-~~~V~-V~~---~~G~--~~~ad~VIvTvP~~~ 132 (412)
|.+|+.+++|++|..++ +++|. |+. .+|+ ++.||+||+|.-+..
T Consensus 246 Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 246 GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 77899999999998722 34442 332 2444 579999999998763
No 279
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=20.34 E-value=85 Score=31.95 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=28.4
Q ss_pred CCceEEEecccccCcCcccchhhhhccHHHHHHHHH
Q psy10795 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375 (412)
Q Consensus 340 ~~~~l~fAGe~t~~~~~g~~eGA~~SG~raA~~i~~ 375 (412)
+.|+||.|||.+.. ....+-|...|..||+.|+.
T Consensus 292 s~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 292 SIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 45799999999864 35788999999999999874
No 280
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=20.05 E-value=1.6e+02 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=28.9
Q ss_pred CCcEEcCCeEEEEEecCCC-cEE-EEe------C-----CCcEEEeCEEEEeCCh
Q psy10795 89 SNKILYKKEVNKIDWEYQN-GAA-VSC------S-----DGSVYTAYKIIITVPL 130 (412)
Q Consensus 89 ~~~I~ln~~V~~I~~~~~~-~V~-V~~------~-----~G~~~~ad~VIvTvP~ 130 (412)
+.+|++++.|+.|.. +++ .|. |.+ . +..++.|+.||.|+=.
T Consensus 118 Gv~I~~~t~V~dl~~-~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 118 GAKIFNGVSVEDVIL-REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred CCEEEcCceeceeeE-eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 678999999999987 444 432 221 1 2247899999999854
Done!