RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10795
(412 letters)
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 142 bits (359), Expect = 4e-38
Identities = 81/288 (28%), Positives = 109/288 (37%), Gaps = 60/288 (20%)
Query: 87 DLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPA 146
L ++ V I +G V+ DG A +I+TVPLGVLK I F+P LPA
Sbjct: 216 LLGGRVRLNTRVRSITKS-GDGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWG 206
K AI L FG+V K+F+ F +W + F T + +V
Sbjct: 273 AKQEAIRNLGFGSVSKVFLEFETPFWPENGDLFGLLVT-----------DGLSRGGYVLD 321
Query: 207 ILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVR 266
LL ++ G AR +E L L ++R R LG +P+P+ +
Sbjct: 322 T--SPSSGSGRGVLLSYVLGDAARELEDLSDEELLEAVLRDLRKLLGPED-VPDPVNFLV 378
Query: 267 SAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNT 326
S W +P+ RGSYS+ P R
Sbjct: 379 SDWHTDPYARGSYSY-------------------PPVGDDSRYRP--------------- 404
Query: 327 SAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374
L PV L FAGE TS + GTV GAVESG A +
Sbjct: 405 ---ALRTPVGPG-----LFFAGEHTSGGYPGTVEGAVESG-LRAARRV 443
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 101 bits (252), Expect = 4e-23
Identities = 76/300 (25%), Positives = 114/300 (38%), Gaps = 59/300 (19%)
Query: 96 KEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLIT----FVPSLPAQKLNA 151
++V +I+W+ + +DGS TA +I+TV LGVLK+ + F P LP K +A
Sbjct: 261 RKVTRIEWQ-DEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDA 319
Query: 152 IEGLNFGTVDKIFIRF--PAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILG 209
I L FG V+K+F+ + F F + D + H W+
Sbjct: 320 ISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSD--SEARHDKIPWWMRRTAS 377
Query: 210 FYMDAEDPLTLLGWIAGPTARYMETLP--------MAVLQADIMRLFRHFLGGAYIIPEP 261
++ LL W AG A +E L L + + R ++ +
Sbjct: 378 ICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNG 437
Query: 262 ------------IRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCR 309
+++++S W +P F GSYS+ +G SS PL
Sbjct: 438 GASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVA--------VG-SSGDDLDRMAEPL-- 486
Query: 310 RSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARE 369
R++ P LLFAGEAT HY T +GA SG RE
Sbjct: 487 ------------PRISDHDQAGGPP-------LQLLFAGEATHRTHYSTTHGAYFSGLRE 527
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 99.4 bits (248), Expect = 9e-23
Identities = 88/307 (28%), Positives = 115/307 (37%), Gaps = 96/307 (31%)
Query: 78 LLVSGQTPV------DLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLG 131
L+V G PV L I V KI Y NG V+ DG+ + A II VPLG
Sbjct: 195 LMVRGYDPVINTLAKGLD--IRLNHRVTKIVRRY-NGVKVTVEDGTTFVADAAIIAVPLG 251
Query: 132 VLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKD------------GCQGF 179
VLK+ +I F P LP K AI L G +KI + F + +W + GC F
Sbjct: 252 VLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYF 311
Query: 180 NFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAV 239
++L K G P +L YM AG AR +E L
Sbjct: 312 ---------LNLHK----ATGHP----VL-VYM-----------PAGRLARDIEKLSDEA 342
Query: 240 LQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQ 299
M + L A EP++ + S W +P+ G YS+ +G+
Sbjct: 343 AANFAMSQLKKMLPDA---TEPVQYLVSRWGSDPNSLGCYSYDL--------VGKP---- 387
Query: 300 RRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTV 359
L R L APV N L FAGEATS G+V
Sbjct: 388 -----HDLYER--------------------LRAPVDN------LFFAGEATSSDFPGSV 416
Query: 360 NGAVESG 366
+GA +G
Sbjct: 417 HGAYSTG 423
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 98.0 bits (244), Expect = 6e-22
Identities = 83/297 (27%), Positives = 126/297 (42%), Gaps = 75/297 (25%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I Y K V+ I +Y N + V+ A ++ TVPLGVLK + I F P LP +KL A
Sbjct: 369 IFYGKTVDTI--KYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAA 426
Query: 152 IEGLNFGTVDKIFIRFPAKWWKD-----GCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWG 206
I+ L FG ++K+ + FP+ +W + GC N ++ + LF V G P
Sbjct: 427 IDRLGFGLLNKVAMVFPSVFWGEELDTFGC--LNESSNKRGEFFLFYGYHTVSGGP---- 480
Query: 207 ILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYI-IPEPIRIV 265
L+ +AG A+ E + L ++ + R I +P+PI+ +
Sbjct: 481 ------------ALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTI 528
Query: 266 RSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLN 325
+ W +P GSYSH R+
Sbjct: 529 CTRWGSDPLSYGSYSHV----------------------------------------RVQ 548
Query: 326 TSAAD---LAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRR 379
+S +D LA V R L FAGEAT+ + T++GA SG RE A+ I+++ R
Sbjct: 549 SSGSDYDILAESVSGR-----LFFAGEATTRQYPATMHGAFLSGLRE-ASRILHVAR 599
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 94.0 bits (234), Expect = 7e-21
Identities = 83/290 (28%), Positives = 126/290 (43%), Gaps = 64/290 (22%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQ 147
++ K V +I + +NG V DGSVY A +I++V LGVL+S LI F P LP
Sbjct: 243 TDPRLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301
Query: 148 KLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGI 207
K+ AI + KIF++FP K+W G G F+ ++ + W
Sbjct: 302 KIEAIYQFDMAVYTKIFLKFPYKFWPSG-PGTEFFLYAHERRGYYP----------FWQ- 349
Query: 208 LGFYMDAEDPLT--LLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIV 265
+++ E P + L + +R +E P + +A+IM + R G IPE I+
Sbjct: 350 ---HLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPN--IPEATDIL 404
Query: 266 RSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLN 325
W N F+GSYS+ P +G S Y+ +
Sbjct: 405 VPRWWSNRFFKGSYSNW-P-------IGVSRYEFDQ------------------------ 432
Query: 326 TSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
+ APV GR + F GE TS + G V+GA +G +TAN ++
Sbjct: 433 -----IRAPV----GR--VYFTGEHTSEKYNGYVHGAYLAGI-DTANDLL 470
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 93.2 bits (231), Expect = 2e-20
Identities = 86/303 (28%), Positives = 124/303 (40%), Gaps = 71/303 (23%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
ILY+K V I + NG V + VY ++ TVPLGVLK+ I FVP LP +KL+
Sbjct: 393 ILYEKTVQTIRYG-SNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDC 450
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYW---TQQDKMDLFKDMVHVDGKPWVWGIL 208
I+ L FG ++K+ + FP +W F + + LF V G P
Sbjct: 451 IKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGP------ 504
Query: 209 GFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAY-----IIPEPIR 263
L+ +AG A ET+P D + H L G Y +P+P++
Sbjct: 505 ----------LLIALVAGEAAHKFETMP----PTDAVTRVLHILRGIYEPQGINVPDPLQ 550
Query: 264 IVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDR 323
V + W +P GSYS+ +G S + D
Sbjct: 551 TVCTRWGGDPFSLGSYSNVA--------VGASG----------------------DDYDI 580
Query: 324 LNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREGFF 383
L S D GR L FAGEAT+ + T++GA +G RE AN + G
Sbjct: 581 LAESVGD---------GR--LFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629
Query: 384 EKL 386
+++
Sbjct: 630 KRI 632
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 89.2 bits (221), Expect = 5e-19
Identities = 74/274 (27%), Positives = 110/274 (40%), Gaps = 68/274 (24%)
Query: 111 VSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAK 170
VS S+GS + ++ITVPLG LK++ I F P LP K ++I+ L FG ++K+ + FP
Sbjct: 976 VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEV 1035
Query: 171 WWKDGCQGFNFYWTQQDKMD---LFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGP 227
+W D F + D +F ++ G P L+ + G
Sbjct: 1036 FWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAP----------------VLIALVVGK 1079
Query: 228 TARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHHGPTQH 287
A +++ + + + R G A ++P+P+ V + W +P G+YS+
Sbjct: 1080 AAIDGQSMSSSDHVNHALMVLRKLFGEA-LVPDPVASVVTDWGRDPFSYGAYSYVA---- 1134
Query: 288 QCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPV---L 344
+G S Y D L GRPV L
Sbjct: 1135 ----IGASG-------------EDY---------DIL---------------GRPVENCL 1153
Query: 345 LFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378
FAGEAT H TV GA+ SG RE I L
Sbjct: 1154 FFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 80.0 bits (197), Expect = 5e-16
Identities = 88/312 (28%), Positives = 128/312 (41%), Gaps = 74/312 (23%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I Y++ V I Y + + G + ++ TVPLGVLK I F P LP +K +A
Sbjct: 449 IFYERTVESI--RYGVDGVIVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDA 506
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMD----LFKDMVHVDGKPWVWGI 207
I+ L +G ++K+ + FP +W F + T+ M LF V G P
Sbjct: 507 IQRLGYGLLNKVALLFPYNFWGGEIDTFG-HLTEDPSMRGEFFLFYSYSSVSGGP----- 560
Query: 208 LGFYMDAEDPLTLLGWIAGPTARYMETL-PMA----VLQADIMRLFRHFLGGAYIIPEPI 262
L+ +AG A ETL P+ VLQ I+R H G ++P+P+
Sbjct: 561 -----------LLIALVAGDAAVKFETLSPVESVKRVLQ--ILRGIFHPKG--IVVPDPV 605
Query: 263 RIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSD 322
+ V + W + GSYS+ +G S + D
Sbjct: 606 QAVCTRWGKDCFTYGSYSYVA--------VGSSG----------------------DDYD 635
Query: 323 RLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI-VYLRREG 381
L S D GR + FAGEAT+ + T++GA SG RE AN + V RR
Sbjct: 636 ILAESVGD---------GR--VFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684
Query: 382 FFEKLVNIAVKE 393
+ VN +E
Sbjct: 685 CIDDKVNNDEEE 696
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 62.5 bits (152), Expect = 1e-10
Identities = 68/350 (19%), Positives = 110/350 (31%), Gaps = 81/350 (23%)
Query: 31 KDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLV----SGQTP- 85
+D + + L D + ++ + E +L Q
Sbjct: 158 RDPGARVSPGPIEPGDVSLLHDAL----PLRSASVVDRGIGGEIRTQMLQRLGGMDQLAE 213
Query: 86 ---VDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVP 142
L +IL + V +ID + +G V+ D Y A +++T+PL +L I F P
Sbjct: 214 AFAKQLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAP 270
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWW-KDGCQGFNFYWTQQDKMDLFKDMVHVDGK 201
LPA+ A +G+ +G+ KI + F +W + G G DL +
Sbjct: 271 LLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLT------DLGLGFISYPSA 324
Query: 202 PWVWG---ILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYII 258
P+ G +LG Y G A ++ LP A + ++ G
Sbjct: 325 PFADGPGVLLGSYA------------FGDDALVIDALPEAERRQKVLARLAKLFGDEAAD 372
Query: 259 PEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLR 318
P WS +P G + + P Q R PT
Sbjct: 373 PFDYGASVD-WSKDPWTLGGTAAYPPGQ----------------------RTKLYPTL-- 407
Query: 319 NGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGAR 368
+ FAG + G + GA+ SG R
Sbjct: 408 -------------------PAPHGRIHFAGTEHASEFGGWLEGAIRSGQR 438
>gnl|CDD|218233 pfam04732, Filament_head, Intermediate filament head (DNA binding)
region. This family represents the N-terminal head
region of intermediate filaments. Intermediate filament
heads bind DNA. Vimentin heads are able to alter nuclear
architecture and chromatin distribution, and the
liberation of heads by HIV-1 protease liberates may play
an important role in HIV-1 associated cytopathogenesis
and carcinogenesis. Phosphorylation of the head region
can affect filament stability. The head has been shown
to interaction with the rod domain of the same protein.
Length = 89
Score = 31.7 bits (72), Expect = 0.14
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 273 PHFRGSYSHHGPTQHQCRRLG---RSSYQQRRPPRAPLCRRSYQ----PTSLRNGSDRLN 325
S S G + G RS + +P + SY+ SD L+
Sbjct: 14 TRSSSSRSSGGSSGRSSSSSGFRSRSVSRSSSSSPSPSLKSSYRKRSSSAPPSLSSDSLD 73
Query: 326 TSAADLAAPVINRE 339
S AD +N E
Sbjct: 74 FSLAD----ALNNE 83
>gnl|CDD|220837 pfam10652, DUF2480, Protein of unknown function (DUF2480). All the
members of this family are uncharacterized proteins, but
the environment in which they are found on the bacterial
genome suggests a function as a glucose-6-phosphate
isomerase (EC 5.3.1.9). This could not, however, be
confirmed.
Length = 167
Score = 30.7 bits (70), Expect = 0.79
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 61 WVWGILGFYMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAV---SCSDGS 117
W + ++ Y+ P V T DL +LY++ ++K+D V CSD
Sbjct: 78 WAYMLVATYLA---PFAKKVVFGTLEDL-ESVLYQEILSKLDLSDYEDKPVIIKGCSDKP 133
Query: 118 V-YTAYKIIITVPLGVLKS 135
V +AY ++ V KS
Sbjct: 134 VPESAYVLLTQKLQPVAKS 152
>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 275
Score = 29.9 bits (67), Expect = 2.0
Identities = 16/77 (20%), Positives = 24/77 (31%)
Query: 307 LCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESG 366
L + A AA + G + + +A SP AVE+
Sbjct: 69 LISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAA 128
Query: 367 ARETANAIVYLRREGFF 383
R + LRR F+
Sbjct: 129 LRSSGIPYTTLRRAAFY 145
>gnl|CDD|240257 PTZ00073, PTZ00073, 60S ribosomal protein L37; Provisional.
Length = 91
Score = 28.2 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 281 HHGPTQHQCRRLGRSSY--QQRRP-----PRAPLCRRSY 312
HG T CRR G+ S+ Q++R P A R Y
Sbjct: 11 RHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAK--MRRY 47
>gnl|CDD|224827 COG1915, COG1915, Uncharacterized conserved protein [Function
unknown].
Length = 415
Score = 29.3 bits (66), Expect = 3.8
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 324 LNTSAADLAAPVINREGRPVLLFAGEATSPHH-----YGTVNG-------AVESGARETA 371
++T AA A +I REG L AG A + H GT G V G R
Sbjct: 212 IHTGAAQHLAHLI-REGYVDALLAGNALAVHDIEQALMGTSLGVDMKRGEPVRGGHRHHL 270
Query: 372 NAIVYLRREGFFEKLV 387
AI +RR G K V
Sbjct: 271 KAINEIRRAGGIRKAV 286
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 28.6 bits (64), Expect = 6.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 123 KIIITVPLGVLKSKLITFVPSLPAQKLNAIE 153
K+IIT G+L ++ITF P+L AIE
Sbjct: 166 KLIITTNYGILNDEIITFTPNLK----EAIE 192
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 28.4 bits (63), Expect = 7.1
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 300 RRPPRAPLCRRS---YQPTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHY 356
R P P+ R + Q T++R+G +L DL V++ G + A S H Y
Sbjct: 129 RAEPAPPVARPAPGRMQRTAVRSGQ-QLYAENCDLT--VLSTVGAGAEVIAD--GSIHIY 183
Query: 357 GTVNGAVESGARETANAIVYLRREGFFEKLVNIA 390
GT+ G +GA+ +A ++ R F +LV IA
Sbjct: 184 GTLRGRALAGAQGNPDARIFCR--DFHAELVAIA 215
>gnl|CDD|237814 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional.
Length = 184
Score = 27.9 bits (62), Expect = 7.6
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 101 IDWE--YQNGAAVSCSDGSVYTAYKIIITVPLGVL-------KSKLITFVPSLPAQKL-- 149
+DW + GAA S GS + + V LG+L + + +T V SL A
Sbjct: 65 LDWVLTFNTGAAWSLFSGSALPLALMRLLVGLGLLVYLLRRPQPRFLTVVLSLIAAGAIG 124
Query: 150 NAIEGLNFGTV 160
NAI+GL FG V
Sbjct: 125 NAIDGLRFGRV 135
>gnl|CDD|182802 PRK10877, PRK10877, protein disulfide isomerase II DsbC;
Provisional.
Length = 232
Score = 28.1 bits (63), Expect = 8.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 80 VSGQTPVDLSNKILYKK 96
VSG PV+++N++L KK
Sbjct: 75 VSGTAPVNVTNQLLLKK 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.452
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,762,170
Number of extensions: 2131913
Number of successful extensions: 1875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1866
Number of HSP's successfully gapped: 39
Length of query: 412
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 313
Effective length of database: 6,546,556
Effective search space: 2049072028
Effective search space used: 2049072028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)