RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10795
(412 letters)
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 218 bits (556), Expect = 2e-66
Identities = 67/303 (22%), Positives = 113/303 (37%), Gaps = 58/303 (19%)
Query: 78 LLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL 137
L ++ + ++ K V +I + G V D SVY+A ++++ LGVL+S L
Sbjct: 217 LKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDL 275
Query: 138 ITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVH 197
I F P LP K+ AI + KIF++FP K+W +G F +
Sbjct: 276 IQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSR---------- 325
Query: 198 VDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYI 257
+ + F D LL + +R +E +A+IM++ R G
Sbjct: 326 ---RGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK-D 381
Query: 258 IPEPIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
+P+ I+ W + ++G++S+ +
Sbjct: 382 VPDATDILVPRWWSDRFYKGTFSNWPVGVN------------------------------ 411
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377
+ L APV + F GE TS H+ G V+GA SG I
Sbjct: 412 --RYEY-----DQLRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA 458
Query: 378 RRE 380
+++
Sbjct: 459 QKK 461
Score = 46.4 bits (110), Expect = 1e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDK--TDLFKDMVHVDGKP-----W 61
+ + KIF++FP K+W +G + + ++++
Sbjct: 289 AIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVT 348
Query: 62 VWGILGFYMDAEDP 75
V ++ +
Sbjct: 349 VTDEESRRIEQQSD 362
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 191 bits (486), Expect = 8e-56
Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 60/294 (20%)
Query: 87 DLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPA 146
L +++ ++ V ID + V + +Y A +I +P + I F P LP
Sbjct: 224 LLGDRVKLERPVIYIDQT-RENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPM 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWG 206
+ I + G+V K + + +W+ + V
Sbjct: 281 MRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIID--------------GEEAPVAY 326
Query: 207 ILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVR 266
L + ++G+I AR + L + L+ LG EP+
Sbjct: 327 TLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLE-ALEPVHYEE 385
Query: 267 SAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNT 326
W + G Y+ + P T
Sbjct: 386 KNWCEEQYSGGCYTTYFPP--------------------------GILTQYG-------- 411
Query: 327 SAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380
L PV R + FAG T+ H G + GAVE+G R + + +
Sbjct: 412 --RVLRQPV----DR--IYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKI 457
Score = 39.4 bits (92), Expect = 0.002
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWW-KDGCQGFNLYWTQQDKTDLFKDMVHVDGKP-----WV 62
++ + G+V K + + +W K G + ++ D +G ++
Sbjct: 285 MITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFI 344
Query: 63 WGILGFYMDAEDP 75
+
Sbjct: 345 LAHKARKLARLTK 357
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 188 bits (478), Expect = 3e-55
Identities = 51/289 (17%), Positives = 88/289 (30%), Gaps = 64/289 (22%)
Query: 87 DLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPA 146
L + + V + W ++GA V A ++I+ VP + I++ P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWN-ESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 147 QKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWG 206
++ + + G V K+ + +W++ + V
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGAS----------------EVVQE 324
Query: 207 ILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVR 266
+ +D TL+ +++ A M L +A I+ +LG EP+
Sbjct: 325 VYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYYE 382
Query: 267 SAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNT 326
S W RG Y+
Sbjct: 383 SDWGSEEWTRGCYAASFDL--------------------------GGLHRYG-------- 408
Query: 327 SAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
AD PV G + F+ + Y V+GAV G R A I+
Sbjct: 409 --ADSRTPV----GP--IHFSCSDIAAEGYQHVDGAVRMGQRT-AADII 448
Score = 44.7 bits (106), Expect = 4e-05
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKP----WVWG 64
+ Q + G V K+ + +W++ + + +++ + H D + +V
Sbjct: 285 MHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSD 344
Query: 65 ILGFYMDAEDP 75
M
Sbjct: 345 EKADAMFELSA 355
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 190 bits (484), Expect = 7e-54
Identities = 63/295 (21%), Positives = 102/295 (34%), Gaps = 54/295 (18%)
Query: 91 KILYKKEVNKIDWEYQN-----GAAVSCSDGSVYTAYKIIITVPLGVLKSK--LITFVPS 143
I V ++ + S S +Y ++ T+PLGVLK + + FVP
Sbjct: 583 DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP 642
Query: 144 LPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPW 203
LP K +A++ + FG ++K+ + F +W F +
Sbjct: 643 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGST----------------TA 686
Query: 204 VWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIR 263
G L + + LL +AG A ME + V+ + + + G + +P+P
Sbjct: 687 SRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQPKE 745
Query: 264 IVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDR 323
V S W +P RGSYS+ D
Sbjct: 746 TVVSRWRADPWARGSYSYVAAGSSGNDY------------------------------DL 775
Query: 324 LNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378
+ + + P L FAGE T ++ TV+GA+ SG RE
Sbjct: 776 MAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 830
Score = 46.5 bits (109), Expect = 1e-05
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 10 LQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKP----WVWGI 65
+Q + FG ++K+ + F +W F + ++ P V G
Sbjct: 651 VQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGE 710
Query: 66 LGFYMDAEDP 75
M+
Sbjct: 711 AAGIMENISD 720
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 188 bits (478), Expect = 9e-54
Identities = 65/296 (21%), Positives = 105/296 (35%), Gaps = 56/296 (18%)
Query: 91 KILYKKEVNKIDWEYQNGAAV------SCSDGSVYTAYKIIITVPLGVLKSK--LITFVP 142
I V ++ + +G V S S +Y ++ T+PLGVLK + + FVP
Sbjct: 412 DIKLNTAVRQVRYT-ASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVP 470
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKP 202
LP K +A++ + FG ++K+ + F +W F +
Sbjct: 471 PLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGST----------------T 514
Query: 203 WVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPI 262
G L + + LL +AG A ME + V+ + + + G + +P+P
Sbjct: 515 ASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQPK 573
Query: 263 RIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSD 322
V S W +P RGSYS+ D
Sbjct: 574 ETVVSRWRADPWARGSYSYVAAGSSGNDY------------------------------D 603
Query: 323 RLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLR 378
+ + + P L FAGE T ++ TV+GA+ SG RE
Sbjct: 604 LMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
Score = 46.4 bits (109), Expect = 1e-05
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 10 LQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKP----WVWGI 65
+Q + FG ++K+ + F +W F + ++ P V G
Sbjct: 480 VQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGE 539
Query: 66 LGFYMDAEDP 75
M+
Sbjct: 540 AAGIMENISD 549
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 172 bits (436), Expect = 9e-49
Identities = 65/341 (19%), Positives = 102/341 (29%), Gaps = 91/341 (26%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKL---------I 138
N + EV I E V+C DG+VY A +IITVP VL + I
Sbjct: 213 PQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRI 272
Query: 139 TFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWT-------------- 184
F P L +A + ++FG + K+ F W +
Sbjct: 273 EFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAEN 332
Query: 185 -QQDKMDLFKDMVHVDGKPWVWGILGFYMD---AEDPLTLLGWIAGPTARYMETLP---- 236
+ L ++ W F+++ + + + + P ++E++
Sbjct: 333 LDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKE 392
Query: 237 -------------MAVLQ----ADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSY 279
M L D MR + P I+ S W+ +P+ RG+Y
Sbjct: 393 RLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANK--PVLRNIIVSNWTRDPYSRGAY 450
Query: 280 SHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINRE 339
S P ++ +R
Sbjct: 451 SACFPGDDPVD------------------------------------MVVAMSNGQDSR- 473
Query: 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRRE 380
+ FAGE T G GA ESG RE L+ E
Sbjct: 474 ----IRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510
Score = 41.3 bits (96), Expect = 5e-04
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWT 42
++FG + K+ F W +
Sbjct: 285 AFDKIHFGALGKVIFEFEECCWSNESSKIVTLAN 318
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 151 bits (383), Expect = 1e-41
Identities = 49/284 (17%), Positives = 84/284 (29%), Gaps = 80/284 (28%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
I + V ID + V+ DG + A+ +I+ P+ + I F P+LP ++ +
Sbjct: 220 IRLQTVVTGIDQS-GDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSV 276
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFY 211
IE + G KI I C G DG + +
Sbjct: 277 IEEGHGGQGLKILIHVRGAEAGIECVG--------------------DG--IFPTLYDYC 314
Query: 212 MDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSI 271
+E L+ + + + + ++L E + I W
Sbjct: 315 EVSESERLLVAFTDSGSFDPTD-------IGAVKDAVLYYLPEV----EVLGIDYHDWIA 363
Query: 272 NPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADL 331
+P F G + Q + + +L
Sbjct: 364 DPLFEGPWVAPRV---------------------------GQFSRVH----------KEL 386
Query: 332 AAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
P GR + F G S G + GA+E+ NAI+
Sbjct: 387 GEPA----GR--IHFVGSDVSLEFPGYIEGALETAECA-VNAIL 423
Score = 32.5 bits (74), Expect = 0.25
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGF 68
+++ + G KI I C G ++ D V +L
Sbjct: 276 VIEEGHGGQGLKILIHVRGAEAGIECVGDGIFP-------TLYDYCEVSESE---RLLVA 325
Query: 69 YMDAE 73
+ D+
Sbjct: 326 FTDSG 330
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 152 bits (384), Expect = 2e-41
Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 74/284 (26%)
Query: 92 ILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNA 151
++ V + E ++ A V+ DG + A +++ T+PL VL + I F P+L ++++A
Sbjct: 273 YVFGCPVRSVVNE-RDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISA 329
Query: 152 IEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFY 211
++ + K+ K + + + + K +G
Sbjct: 330 MQAGHVSMCTKVHAEVDNKDMRS-----------------WTGIAYPFNKLCYA--IGDG 370
Query: 212 MDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSI 271
L+ + + + ++ G R+V W
Sbjct: 371 TTPAGNTHLVCF-----GNSANHIQPDEDVRETLKAVGQLAPGT---FGVKRLVFHNWVK 422
Query: 272 NPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADL 331
+ +G++ P + L
Sbjct: 423 DEFAKGAWFFSRP---------------------------GMVSECL----------QGL 445
Query: 332 AAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
G ++FA + ++GA+E G R A ++
Sbjct: 446 REKH----GG--VVFANSDWALGWRSFIDGAIEEGTRA-ARVVL 482
Score = 32.2 bits (73), Expect = 0.33
Identities = 7/68 (10%), Positives = 15/68 (22%), Gaps = 4/68 (5%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGF 68
+Q + K+ K + + + D G + G
Sbjct: 329 AMQAGHVSMCTKVHAEVDNKDMRSWT---GIAYPFNKLCYAIGDGTTPAGNTHLVC-FGN 384
Query: 69 YMDAEDPL 76
+ P
Sbjct: 385 SANHIQPD 392
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 136 bits (343), Expect = 1e-35
Identities = 51/294 (17%), Positives = 92/294 (31%), Gaps = 69/294 (23%)
Query: 87 DLSNKILYKKEVNKIDWEYQNGAAVSC----SDGSVYTAYKIIITVPLGVLKSKLITFVP 142
D+ +K+ + +V KI V + TA +I+ ++ I F P
Sbjct: 250 DIQDKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306
Query: 143 SLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKP 202
L +K +A+ +++ + KIF+ K+W+D T P
Sbjct: 307 PLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTT---------------DLP 351
Query: 203 WVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFR--HFLGGAYIIPE 260
+ + ++ + G A + + L + H L I
Sbjct: 352 SRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSF 411
Query: 261 PIRIVRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNG 320
V WS++ + G + P Q Q +
Sbjct: 412 CYPSVIQKWSLDKYAMGGITTFTPYQFQ----------------------HFSD------ 443
Query: 321 SDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374
L A +GR + FAGE T+ H G ++ ++SG R A +
Sbjct: 444 ---------PLTAS----QGR--IYFAGEYTAQAH-GWIDSTIKSGLR-AARDV 480
Score = 35.2 bits (81), Expect = 0.033
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 8 TLLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKP-----WV 62
L+ +++ + KIF+ K+W+D T ++ + +
Sbjct: 314 HALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYG 373
Query: 63 WGILGFYMDAEDP 75
G + A D
Sbjct: 374 IGDDANFFQALDF 386
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 130 bits (328), Expect = 1e-33
Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 63/290 (21%)
Query: 89 SNKILYKKEVNKIDWEYQNGAAVSCSDGS---VYTAYKIIITVPLGVLKSKLITFVPSLP 145
++ I++ EV + G V + G TA I T+P ++ +LP
Sbjct: 251 TDNIVFGAEVTSMKNV-SEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLP 305
Query: 146 AQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFY-WTQQDKMDLFKDMVHVDGKPWV 204
L A++ + K+ I + +WW+ + + T +D + H + V
Sbjct: 306 GDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGV 365
Query: 205 WGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRI 264
++ +Y +G E+L A + G Y +
Sbjct: 366 --VVAYYS------------SGKRQEAFESLTHRQRLAKAIAEGSEIHGEKY-TRDISSS 410
Query: 265 VRSAWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRL 324
+W + ++++ + Y+
Sbjct: 411 FSGSWRRTKYSESAWANWAGSGGSHGGAATPEYE-------------------------- 444
Query: 325 NTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374
L PV + + FAG+ S +GA+ S I
Sbjct: 445 -----KLLEPV----DK--IYFAGDHLSNAI-AWQHGALTSARDV-VTHI 481
Score = 34.9 bits (80), Expect = 0.048
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 8 TLLQGLNFGTVDKIFIRFPAKWW-KDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGIL 66
T L+ + K+ I + +WW + T +D + + H + V ++
Sbjct: 310 TALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGV--VV 367
Query: 67 GFYMDAED 74
+Y +
Sbjct: 368 AYYSSGKR 375
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 65.7 bits (160), Expect = 2e-13
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 114 SDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW- 172
+ +T I+T+P L+ + P +K A+ ++ K+ + F +WW
Sbjct: 1 AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWE 58
Query: 173 KDGCQGFNFYWTQQD 187
Sbjct: 59 FTEADWKRELDAIAP 73
Score = 29.9 bits (67), Expect = 0.62
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 10 LQGLNFGTVDKIFIRFPAKWW-KDGCQGFNLYWTQQD 45
+ ++ K+ + F +WW
Sbjct: 37 VIETHYDQATKVLLEFSRRWWEFTEADWKRELDAIAP 73
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 65.7 bits (160), Expect = 8e-13
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 45/155 (29%)
Query: 220 LLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSY 279
L + A ++ A + + G + +W +P+ G
Sbjct: 39 LAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEA 98
Query: 280 SHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINRE 339
+ + P Q ++ D+ P E
Sbjct: 99 AVYTPHQM----------------------TAFHL---------------DVVRP----E 117
Query: 340 GRPVLLFAGEATSPHHYGTVNGAVESGARETANAI 374
G + FAGE S H + GAVE+ R A A+
Sbjct: 118 GP--VYFAGEHVSLKH-AWIEGAVETAVR-AAIAV 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 79/480 (16%), Positives = 143/480 (29%), Gaps = 191/480 (39%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQG-FNLYWTQ-QDKTDLFKDMVHVDGKPWVWGIL 66
L + + G ++ F G QG + Y+ + +D L++ V ++
Sbjct: 145 LFRAVGEGNA-QLVAIF-------GGQGNTDDYFEELRD---LYQT-----YHVLVGDLI 188
Query: 67 GFYMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDW----------EYQNGAAVSCSDG 116
F + + L+ L+ T +D ++ + +N ++W +Y +SC
Sbjct: 189 KF---SAETLSELIR--TTLDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPISC--- 238
Query: 117 SVYTAYKIIITVPLG--VLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKD 174
+I + L V+ +KL+ F P L G + G V + I W+
Sbjct: 239 ------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWES 291
Query: 175 GCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWI---------- 224
F++ +T+L +I
Sbjct: 292 -----------------------------------FFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 225 -AGPTARYMETL--------PM-AV-------LQADIMRLFRHFLGGAYIIPEPIRIVRS 267
+ P + ++L PM ++ +Q + L + + I
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAG----KQVEISL- 370
Query: 268 AWSINPHFRGSYSHH---GPTQ------HQCRRLGRSS-YQQRRPP---RAPLCRRSYQP 314
+N + GP Q R+ S Q R P R + P
Sbjct: 371 ---VN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 315 TS-------LRNGSDRLNT---------SAADLAAPVINREGRPVLLFAGEATSPHHYGT 358
+ L SD +N +A D+ PV Y T
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--------------------YDT 462
Query: 359 VNGAVESGARETANAIVYLRREGFFEKLVN-IAVK----ELEHKGNQVGRILNLFG-GGI 412
+G S R + +I E++V+ I E + + IL FG GG
Sbjct: 463 FDG---SDLRVLSGSIS--------ERIVDCIIRLPVKWETTTQ-FKATHIL-DFGPGGA 509
Score = 33.5 bits (76), Expect = 0.15
Identities = 25/207 (12%), Positives = 54/207 (26%), Gaps = 60/207 (28%)
Query: 208 LGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRS 267
LG+ +P ++ + VL + +L G I
Sbjct: 65 LGYVSSLVEP--------SKVGQFDQ-----VLNLCLTEFENCYLEGNDI---------- 101
Query: 268 AWSINPH-FRGSYSHHGPT-QHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLN 325
H T + + L ++ R + P ++S + L
Sbjct: 102 ------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS---------NSALF 146
Query: 326 TSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYLRREGFFEK 385
+ + A ++ +F G+ G + E + +Y
Sbjct: 147 RAVGEGNAQLV-------AIFGGQ-----------GNTDDYFEELRD--LYQTYHVLVGD 186
Query: 386 LVNIAVKELEHKGNQVGRILNLFGGGI 412
L+ + + L +F G+
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 28.9 bits (64), Expect = 3.8
Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 88/240 (36%)
Query: 69 YMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITV 128
Y++ D L + ++ KE+ K Y TA +
Sbjct: 95 YLEGNDIHALAAK--LLQENDTTLVKTKELIKN---Y-------------ITARIMAKRP 136
Query: 129 PLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWKDGCQG-FNFYWTQ-Q 186
S L V A +L AI FG G QG + Y+ + +
Sbjct: 137 FDKKSNSALFRAVGEGNA-QLVAI----FG----------------G-QGNTDDYFEELR 174
Query: 187 DKMDLFKDMVHVDGKPWV-------WGILGFYMDAE----DPLTLLGWIAGPTAR----Y 231
D + +V + ++ +DAE L +L W+ P+ Y
Sbjct: 175 DLYQTYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 232 METLPMA-----VLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINP-----HFRGSYSH 281
+ ++P++ V+Q H++ + P + +G+ H
Sbjct: 231 LLSIPISCPLIGVIQ------LAHYV-----------VTAKLLGFTPGELRSYLKGATGH 273
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 51.4 bits (121), Expect = 4e-07
Identities = 37/311 (11%), Positives = 69/311 (22%), Gaps = 64/311 (20%)
Query: 101 IDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTV 160
+++ A+ + D + V +L L P+ A+ + AI L+
Sbjct: 420 SRSGFEHAASQNLGDAGLGLETHTYNQVYPPLL---LSDSSPAANARIVTAIGQLHMARS 476
Query: 161 DKIFIRFPAKWWKD----GCQGFNFYWTQQDKMDLFKDMV-----HVDGKPWVWGILGFY 211
K+F +G D +V P +L Y
Sbjct: 477 SKVFATVKTAALDQPWVPQWRGEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLLASY 536
Query: 212 MDAEDPLTLLGWIAGPTARYMETLP--MAVLQADIMRLFRHFLGGAYIIPEPIRIVRS-- 267
+D L + + + R +R+ +P +
Sbjct: 537 TWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNAQPWWFYQLLA 596
Query: 268 ----------AWSINPHFRGSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSL 317
W+ N G + H L +
Sbjct: 597 EARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASL------------ 643
Query: 318 RNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIVYL 377
+ R A ++ S G + GA S ++
Sbjct: 644 ---------------------DNR--FFIASDSYSHLG-GWLEGAFMSALN-AVAGLIVR 678
Query: 378 RREGFFEKLVN 388
G L
Sbjct: 679 ANRGDVSALST 689
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 4e-04
Identities = 68/416 (16%), Positives = 116/416 (27%), Gaps = 117/416 (28%)
Query: 39 LYWT----QQDKTDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLVSGQTPVDLSNKILY 94
L+WT Q++ F + V ++ + P S T +Y
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQP-----SMMT-------RMY 112
Query: 95 KKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSL-PAQKLNAIE 153
++ +++ +D V+ Y + P L+ L+ L PA+ + I+
Sbjct: 113 IEQRDRL-----------YNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNV-LID 156
Query: 154 GLN-FGTVDKIFIRFPAKWW--KDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGF 210
G+ G K W D C + Q KMD FK + W L
Sbjct: 157 GVLGSG-----------KTWVALDVCLSYKV----QCKMD-FK--IF-------WLNLKN 191
Query: 211 YMDAEDPLTLL---------GWIAGPTARYMETLPMAVLQADIMRLFRH-FLGGAYIIPE 260
E L +L W + L + +QA++ RL + ++
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249
Query: 261 PIRIVRSAWSINPHFRGSYSHHGPTQHQCRRL----------GRSSYQQRRPPRAPLCRR 310
+ V++A + N F C+ L S+
Sbjct: 250 -LLNVQNAKAWN-AF----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 311 SYQPTSLRNGSDRLNTSAADLAAPVINREGRPVLL-FAGEATSPH--------HYGT--V 359
L+ DL P P L E+ H +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 360 NGAVESG--ARETANAIVYLRREGFFEKLVNIAVKEL-----EHKGNQVGRILNLF 408
+ES E A R F +I L + + V ++N
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 133 LKSKLITFVP-SLPAQKLNA-IE 153
L++ L + S PA + A +E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (70), Expect = 0.13
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 289 CRR-LGRSSYQQRRPPRAPLCRRSYQPTSLR 318
C + + + + PLC+ S + ++R
Sbjct: 43 CLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 30.5 bits (69), Expect = 0.29
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 289 CRR-LGRSSYQQRRPPRAPLCRRSYQPTSLR 318
C+ + + Q++ P + PLC+ SL+
Sbjct: 44 CKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 30.2 bits (68), Expect = 1.4
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 246 RLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHH 282
+ + G Y P + IN F G YS
Sbjct: 118 IIMKALWTGQYRYISPKDFKITIGKINDQFAG-YSQQ 153
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.6 bits (65), Expect = 1.8
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 LSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIII-TVPLG 131
L ++I+ + + ++++ G + + + I TVP G
Sbjct: 330 LRDQIVMGQRMVRLEYY-DPGRDGHHGELTGPGGPAVAIQTVPEG 373
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 27.6 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 289 CR----RLGRSSYQQRRPPRAPLCRRSYQPTSLR 318
C+ + S + P+CR SYQP ++R
Sbjct: 42 CQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D*
2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D*
2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D*
...
Length = 205
Score = 28.8 bits (65), Expect = 2.5
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 283 GPTQHQCRRLGRS-SYQQRRPPRAPLCRRSYQP 314
GP RR G + C+ P
Sbjct: 5 GPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAP 37
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 29.0 bits (65), Expect = 2.6
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 3/46 (6%)
Query: 237 MAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHH 282
+ A +++ + P P F G Y+
Sbjct: 57 LVEEFAKLIQTIWTSSPNDVV--SPSEFKTQIQRYAPRFVG-YNQQ 99
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 28.8 bits (64), Expect = 3.2
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 191 LFKDMVHVDGKPWVWGILGFYMDAEDPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRH 250
L V + +W L A R+ + + +++ ++
Sbjct: 253 LLMREVPLRCTIRLWDTY-QSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQN 311
Query: 251 FLGGAYIIPEPIRIVRSAWSINPHFRGSYSHH 282
+ + ++ A+ + F + +H+
Sbjct: 312 LPTAHWDDEDISLLLAEAYRLKFAFADAPNHY 343
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 28.7 bits (63), Expect = 3.7
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 101 IDWEYQNGAAVSCSDGSV--YTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFG 158
D EY N +S + A + + KL+T + ++G++
Sbjct: 286 YDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAMPDKLVTVFDWGQMYGVATVDGVDAK 345
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 28.0 bits (62), Expect = 6.8
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 232 METLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHH 282
++ + + A + I ++ AW IN + G YS
Sbjct: 192 LDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAG-YSQQ 241
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 27.5 bits (61), Expect = 8.4
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 47 TDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLVSGQTPVDLSNK 91
D P++ +GF MD + T + G VD+S +
Sbjct: 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGR 239
>2g0t_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Length = 350
Score = 27.4 bits (60), Expect = 9.0
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 320 GSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
GSD+++ + + + G P + A H T G + +V
Sbjct: 2 GSDKIHHHHHHMDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVV 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.452
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,744,859
Number of extensions: 415417
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 56
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)