RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10795
(412 letters)
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
[TaxId: 4577]}
Length = 112
Score = 86.0 bits (212), Expect = 3e-21
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 156 NFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAE 215
+ KIF++FP K+W +G F + + + F
Sbjct: 1 DMAVYTKIFLKFPRKFWPEGKGREFFLYASSRR-------------GYYGVWQEFEKQYP 47
Query: 216 DPLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHF 275
D LL + +R +E +A+IM++ R G +P+ I+ W + +
Sbjct: 48 DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPG-KDVPDATDILVPRWWSDRFY 106
Query: 276 RGSYSH 281
+G++S+
Sbjct: 107 KGTFSN 112
Score = 39.4 bits (91), Expect = 8e-05
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 14 NFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGFYMDAE 73
+ KIF++FP K+W +G + + + + + +L + E
Sbjct: 1 DMAVYTKIFLKFPRKFWPEGKGREFFLYASSRR-GYYGVWQEFEKQYPDANVLLVTVTDE 59
Query: 74 D 74
+
Sbjct: 60 E 60
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 77.5 bits (190), Expect = 3e-18
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 157 FGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAED 216
FG ++K+ + F +W F + + F+ +
Sbjct: 2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTT---------------ASRGELFLFWNLYKA 46
Query: 217 PLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFR 276
P+ LL +AG A ME + V+ + + + G + + P+P V S W +P R
Sbjct: 47 PI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV-PQPKETVVSRWRADPWAR 104
Query: 277 GSYSH 281
GSYS+
Sbjct: 105 GSYSY 109
Score = 39.0 bits (90), Expect = 1e-04
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 15 FGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGFYMDAED 74
FG ++K+ + F +W F + + K + L A
Sbjct: 2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGEL-FLFWNLYKAPILLALVAGEAAGI 60
Query: 75 PLTL 78
+
Sbjct: 61 MENI 64
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 75.6 bits (185), Expect = 2e-17
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 15/123 (12%)
Query: 158 GTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDP 217
G+V K + + +W K D M+ + V L +
Sbjct: 3 GSVIKCIVYYKEPFW--------------RKKDYCGTMIIDGEEAPVAYTLDDTKPEGNY 48
Query: 218 LTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRG 277
++G+I AR + L + L+ LG EP+ W + G
Sbjct: 49 AAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEA-LEPVHYEEKNWCEEQYSGG 107
Query: 278 SYS 280
Y+
Sbjct: 108 CYT 110
Score = 31.7 bits (71), Expect = 0.052
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 16 GTVDKIFIRFPAKWW-KDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVW 63
G+V K + + +W K G + ++ D +G
Sbjct: 3 GSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAI 51
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
(Calloselasma rhodostoma) [TaxId: 8717]}
Length = 113
Score = 63.7 bits (154), Expect = 3e-13
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 17/126 (13%)
Query: 157 FGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAED 216
+ + KIF+ K+W+D T ++ + V
Sbjct: 2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGV------------ 49
Query: 217 PLTLLGWIAGPTARYMETLPMAVLQADIMRLFRHFLG--GAYIIPEPIRIVRSAWSINPH 274
++ + G A + + L + I V WS++ +
Sbjct: 50 ---IIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKY 106
Query: 275 FRGSYS 280
G +
Sbjct: 107 AMGGIT 112
Score = 34.4 bits (78), Expect = 0.005
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 15 FGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKP-----WVWGILGFY 69
+ + KIF+ K+W+D T ++ + + G +
Sbjct: 2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANF 61
Query: 70 MDAEDP 75
A D
Sbjct: 62 FQALDF 67
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 62.3 bits (149), Expect = 4e-11
Identities = 32/273 (11%), Positives = 64/273 (23%), Gaps = 51/273 (18%)
Query: 114 SDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWWK 173
D + + G L+ KL + P+ + + F
Sbjct: 212 RDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPL 271
Query: 174 DGCQGFNF-----------YWTQQDKMDLFKDMVHVDGKPWVWGILGFYMDAEDPLTLLG 222
++ + T ++ + + + ++
Sbjct: 272 STLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 331
Query: 223 WIAGPTARYMETLPMAVLQADIMRLFRHFLGGAYIIPEPIRIVRSAWSINPHFRGSYSHH 282
T++ AVL + + + W + R +
Sbjct: 332 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP-----AVQFVPPLPEWKTSAVQRMVAAGS 386
Query: 283 GPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVINREGRP 342
+ D + + + P
Sbjct: 387 SGNDY----------------------------------DLMAQPITPGPSIPGAPQPIP 412
Query: 343 VLLFAGEATSPHHYGTVNGAVESGARETANAIV 375
L FAGE T ++ TV+GA+ SG RE A I
Sbjct: 413 RLFFAGEHTIRNYPATVHGALLSGLRE-AGRIA 444
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 49.2 bits (115), Expect = 4e-07
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 99 NKIDWEYQNGAAVSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFG 158
+ G V D SVY+A ++++ LGVL+S LI F P LP K+ AI
Sbjct: 233 VREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPV 292
Query: 159 TVDKIFIRFPAKWWKDG 175
V++ + G
Sbjct: 293 GVNR--YEYDQLRAPVG 307
Score = 33.0 bits (73), Expect = 0.060
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 314 PTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANA 373
PT + + R + F GE TS H+ G V+GA SG ++A
Sbjct: 279 PTWKVRAIYQFWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSG-IDSAEI 337
Query: 374 I 374
+
Sbjct: 338 L 338
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 47.0 bits (110), Expect = 3e-06
Identities = 18/164 (10%), Positives = 42/164 (25%), Gaps = 5/164 (3%)
Query: 9 LLQGLNFGTVDKIFIRFPAKWWKDGCQGFNLYWTQQDKTDLFKDMVHVDGKPWVWGILGF 68
+ + L+ + + + + K
Sbjct: 143 MKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQE 202
Query: 69 YMDAEDPLTLLVSGQTPVDLSNKILYKKEVNKIDWEYQNGAAVSCSDGSVYTAYKIIITV 128
+ L +++ ++ V ID + V + +Y A +I +
Sbjct: 203 RKFVGGSGQVSERIMD--LLGDRVKLERPVIYIDQT-RENVLVETLNHEMYEAKYVISAI 259
Query: 129 PLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAKWW 172
P + I F P LP + I + + + R +
Sbjct: 260 PPTLGMK--IHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPV 301
Score = 33.2 bits (74), Expect = 0.061
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 314 PTSLRNGSDRLNTSAADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGARETANA 373
P R+ + R+ + FAG T+ H G + GAVE+G R
Sbjct: 274 PMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREI 333
Query: 374 IVYLRR 379
+ + +
Sbjct: 334 LHAMGK 339
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 39.7 bits (91), Expect = 5e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 111 VSCSDGSVYTAYKIIITVPLGVLKSKLITFVPSLPAQKLNAIEGLNFGTVDKIFIRFPAK 170
+ TA +I+ ++ LI F P L +K +A+ + F F
Sbjct: 274 TLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVFTP---YQFQHFSDP 328
Query: 171 WWK 173
Sbjct: 329 LTA 331
Score = 30.5 bits (67), Expect = 0.40
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 329 ADLAAPVINREGRPVLLFAGEATSPHHYGTVNGAVESGAR 368
+ P+ +GR + FAGE T+ H G ++ ++SG R
Sbjct: 323 QHFSDPLTASQGR--IYFAGEYTAQAH-GWIDSTIKSGLR 359
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 27.8 bits (62), Expect = 0.52
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 139 TFVPSLPAQKLN-AIEGLNFGTVDKIFIRFPAKWWKDGCQGFNFYWTQQDKMDLFKDM 195
TF PS L+ AI G + I K Q + Q+ L + +
Sbjct: 1 TFNPSSDVAALHKAIMV--KGVDEATIIDILTKRNNAQRQQIKAAYLQETGKPLDETL 56
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 56
Score = 27.0 bits (60), Expect = 0.61
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 281 HHGPTQHQCRRLGRSSYQQRR 301
+ T +CRR G SY ++
Sbjct: 11 KNTTTHTKCRRCGEKSYHTKK 31
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2,
SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Length = 308
Score = 27.4 bits (59), Expect = 3.0
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 277 GSYSHHGPTQHQCRRLGRSSYQQRRPPRAPLCRRSYQPTSLRNGSDRLNTSAADLAAPVI 336
G + T Q+ R R Y P+ + D + + I
Sbjct: 222 GQFIIFWSTLMHASYPHSGESQEMR--MGFASR--YVPSFVHVYPD---SDHIEEYGGRI 274
Query: 337 NREGRPVLLFAGEATSPHH 355
+ E + G+ T ++
Sbjct: 275 SLEKYGAVQVIGDETPEYN 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.452
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,681,687
Number of extensions: 82201
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 20
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)