Query psy10797
Match_columns 517
No_of_seqs 191 out of 318
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:44:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978|consensus 100.0 1.3E-44 2.8E-49 394.4 29.5 271 241-515 364-698 (698)
2 PF08647 BRE1: BRE1 E3 ubiquit 99.7 7.3E-17 1.6E-21 139.3 12.4 96 326-421 1-96 (96)
3 KOG0320|consensus 99.1 5.5E-11 1.2E-15 113.3 2.1 49 466-515 130-187 (187)
4 KOG0978|consensus 98.5 6.9E-05 1.5E-09 84.4 26.3 146 307-452 415-571 (698)
5 COG1579 Zn-ribbon protein, pos 98.5 4.5E-05 9.7E-10 76.5 22.4 154 307-464 24-184 (239)
6 TIGR02169 SMC_prok_A chromosom 98.4 0.00014 3.1E-09 83.7 28.2 16 66-81 28-43 (1164)
7 PLN03208 E3 ubiquitin-protein 98.4 1.4E-07 3E-12 91.6 3.1 50 466-515 17-88 (193)
8 PRK02224 chromosome segregatio 98.4 6.5E-05 1.4E-09 85.5 24.2 122 300-428 251-379 (880)
9 KOG0823|consensus 98.4 1.9E-07 4.1E-12 92.4 3.0 49 466-514 46-103 (230)
10 PRK02224 chromosome segregatio 98.4 0.00023 5E-09 81.1 28.0 98 327-424 264-361 (880)
11 KOG0317|consensus 98.3 1.8E-07 4E-12 95.0 2.4 46 466-512 238-290 (293)
12 PF13923 zf-C3HC4_2: Zinc fing 98.3 3.1E-07 6.7E-12 66.8 1.9 33 470-503 1-39 (39)
13 TIGR02168 SMC_prok_B chromosom 98.3 0.00038 8.2E-09 79.8 27.1 15 246-260 676-690 (1179)
14 PRK11637 AmiB activator; Provi 98.2 0.0012 2.6E-08 70.2 27.8 19 243-261 43-61 (428)
15 TIGR02168 SMC_prok_B chromosom 98.2 0.00071 1.5E-08 77.6 27.5 12 249-260 672-683 (1179)
16 PF00261 Tropomyosin: Tropomyo 98.2 0.001 2.2E-08 65.8 24.8 175 274-450 40-214 (237)
17 PF13920 zf-C3HC4_3: Zinc fing 98.2 8.8E-07 1.9E-11 67.5 1.9 42 467-509 2-49 (50)
18 PRK11637 AmiB activator; Provi 98.1 0.0014 2.9E-08 69.8 25.7 10 246-255 53-62 (428)
19 KOG0971|consensus 98.1 0.00069 1.5E-08 77.8 23.0 205 245-450 229-500 (1243)
20 smart00504 Ubox Modified RING 98.1 2.6E-06 5.6E-11 66.5 2.8 46 467-513 1-53 (63)
21 PF14835 zf-RING_6: zf-RING of 98.0 1.1E-06 2.4E-11 71.9 0.2 47 461-511 2-56 (65)
22 PF13639 zf-RING_2: Ring finge 98.0 2.1E-06 4.6E-11 63.6 1.3 35 469-504 2-44 (44)
23 PF14662 CCDC155: Coiled-coil 98.0 0.0056 1.2E-07 59.9 25.0 61 304-364 40-103 (193)
24 PF15227 zf-C3HC4_4: zinc fing 98.0 2.7E-06 5.7E-11 63.6 1.8 34 470-503 1-42 (42)
25 cd00162 RING RING-finger (Real 98.0 4.1E-06 8.8E-11 59.5 2.7 37 469-505 1-43 (45)
26 smart00184 RING Ring finger. E 98.0 3.6E-06 7.7E-11 57.7 2.2 34 470-503 1-39 (39)
27 TIGR00599 rad18 DNA repair pro 97.9 3.9E-06 8.5E-11 89.2 2.6 51 460-512 20-77 (397)
28 PRK03918 chromosome segregatio 97.9 0.0032 7E-08 71.7 25.2 25 370-394 307-331 (880)
29 PRK04778 septation ring format 97.9 0.0069 1.5E-07 67.1 26.7 210 241-450 166-428 (569)
30 PF00097 zf-C3HC4: Zinc finger 97.9 7.4E-06 1.6E-10 59.4 2.2 34 470-503 1-41 (41)
31 KOG0161|consensus 97.9 0.0051 1.1E-07 76.2 27.1 44 407-450 1099-1142(1930)
32 PF00261 Tropomyosin: Tropomyo 97.8 0.0038 8.3E-08 61.8 20.9 120 300-419 43-162 (237)
33 KOG2164|consensus 97.8 9.3E-06 2E-10 88.0 2.7 50 467-516 186-246 (513)
34 PHA02562 46 endonuclease subun 97.8 0.01 2.3E-07 64.1 25.7 49 382-430 304-355 (562)
35 COG5574 PEX10 RING-finger-cont 97.8 9.5E-06 2.1E-10 82.0 1.7 45 466-510 214-266 (271)
36 PF14634 zf-RING_5: zinc-RING 97.7 1.5E-05 3.3E-10 59.5 1.7 36 469-505 1-44 (44)
37 KOG0161|consensus 97.7 0.012 2.6E-07 73.0 26.9 96 303-398 939-1034(1930)
38 PF07888 CALCOCO1: Calcium bin 97.7 0.011 2.4E-07 65.5 24.3 74 299-372 163-236 (546)
39 KOG0963|consensus 97.7 0.019 4.1E-07 64.3 25.7 75 318-392 193-271 (629)
40 KOG0250|consensus 97.7 0.012 2.7E-07 69.0 25.4 84 337-420 304-387 (1074)
41 COG1196 Smc Chromosome segrega 97.7 0.013 2.8E-07 69.9 26.4 47 368-414 798-844 (1163)
42 PHA02562 46 endonuclease subun 97.7 0.012 2.5E-07 63.7 23.8 26 370-395 299-324 (562)
43 COG1196 Smc Chromosome segrega 97.7 0.023 5.1E-07 67.8 27.8 18 410-427 833-850 (1163)
44 KOG0250|consensus 97.6 0.013 2.8E-07 68.8 24.6 71 361-431 356-427 (1074)
45 KOG0996|consensus 97.6 0.0095 2.1E-07 70.3 22.6 177 244-424 775-961 (1293)
46 KOG1029|consensus 97.6 0.013 2.8E-07 66.9 22.5 78 328-405 472-549 (1118)
47 PRK09039 hypothetical protein; 97.6 0.011 2.4E-07 62.0 20.6 105 310-421 77-181 (343)
48 PF07888 CALCOCO1: Calcium bin 97.6 0.061 1.3E-06 59.9 27.1 48 300-347 178-225 (546)
49 PHA02926 zinc finger-like prot 97.5 4.9E-05 1.1E-09 75.6 2.4 40 466-505 169-227 (242)
50 TIGR00606 rad50 rad50. This fa 97.5 0.024 5.2E-07 68.5 24.9 118 300-421 799-925 (1311)
51 PRK04863 mukB cell division pr 97.5 0.072 1.6E-06 65.5 28.9 79 327-405 347-425 (1486)
52 KOG4673|consensus 97.5 0.017 3.8E-07 65.2 21.7 91 316-412 418-509 (961)
53 KOG1029|consensus 97.4 0.021 4.6E-07 65.3 22.1 89 267-355 321-420 (1118)
54 PHA02929 N1R/p28-like protein; 97.4 8.7E-05 1.9E-09 74.4 2.9 39 466-505 173-224 (238)
55 PRK03918 chromosome segregatio 97.4 0.093 2E-06 60.0 27.2 8 498-505 436-443 (880)
56 COG4942 Membrane-bound metallo 97.4 0.17 3.7E-06 54.9 27.3 174 277-450 38-241 (420)
57 KOG0971|consensus 97.4 0.091 2E-06 61.2 26.4 181 270-450 224-441 (1243)
58 KOG0976|consensus 97.4 0.047 1E-06 62.8 23.8 25 481-505 632-656 (1265)
59 KOG0996|consensus 97.4 0.05 1.1E-06 64.6 24.7 57 35-92 68-139 (1293)
60 PRK04863 mukB cell division pr 97.4 0.066 1.4E-06 65.8 26.6 180 232-418 220-424 (1486)
61 TIGR00606 rad50 rad50. This fa 97.3 0.12 2.6E-06 62.6 28.5 95 239-333 757-862 (1311)
62 KOG0933|consensus 97.3 0.047 1E-06 64.0 22.9 96 300-402 787-889 (1174)
63 PF06160 EzrA: Septation ring 97.3 0.082 1.8E-06 58.8 24.3 209 242-450 163-424 (560)
64 TIGR01843 type_I_hlyD type I s 97.3 0.054 1.2E-06 55.9 21.5 46 356-401 182-227 (423)
65 PRK09039 hypothetical protein; 97.3 0.065 1.4E-06 56.3 22.2 51 302-352 55-105 (343)
66 COG1579 Zn-ribbon protein, pos 97.3 0.16 3.6E-06 51.4 24.0 114 297-411 7-123 (239)
67 COG4372 Uncharacterized protei 97.2 0.32 7E-06 52.5 26.4 64 305-368 100-163 (499)
68 PF13445 zf-RING_UBOX: RING-ty 97.2 0.00017 3.7E-09 54.7 1.5 31 470-501 1-43 (43)
69 KOG0612|consensus 97.2 0.12 2.6E-06 61.8 25.0 64 356-419 602-665 (1317)
70 KOG0977|consensus 97.2 0.099 2.1E-06 58.3 23.3 60 321-380 155-214 (546)
71 PRK01156 chromosome segregatio 97.2 0.18 3.8E-06 58.4 26.2 43 298-340 202-244 (895)
72 PF05701 WEMBL: Weak chloropla 97.2 0.17 3.6E-06 56.0 24.9 73 358-430 283-355 (522)
73 PF09726 Macoilin: Transmembra 97.2 0.078 1.7E-06 60.7 22.9 28 338-365 548-575 (697)
74 KOG4674|consensus 97.1 0.18 3.8E-06 62.7 26.8 124 275-398 634-766 (1822)
75 PF15070 GOLGA2L5: Putative go 97.1 0.17 3.8E-06 57.2 25.1 132 238-376 41-194 (617)
76 TIGR03007 pepcterm_ChnLen poly 97.1 0.1 2.2E-06 56.2 22.5 19 274-292 172-190 (498)
77 PF14662 CCDC155: Coiled-coil 97.1 0.1 2.2E-06 51.3 20.2 76 375-450 93-168 (193)
78 PF12718 Tropomyosin_1: Tropom 97.1 0.12 2.7E-06 48.1 20.0 128 296-441 10-137 (143)
79 COG5432 RAD18 RING-finger-cont 97.1 0.00018 3.9E-09 74.0 1.2 39 466-505 24-67 (391)
80 PF09726 Macoilin: Transmembra 97.1 0.21 4.5E-06 57.3 25.5 58 374-431 542-599 (697)
81 KOG0933|consensus 97.1 0.15 3.2E-06 60.1 24.2 77 323-402 736-812 (1174)
82 PRK10929 putative mechanosensi 97.1 0.16 3.5E-06 60.8 25.3 74 245-318 43-127 (1109)
83 KOG0999|consensus 97.1 0.18 3.9E-06 56.3 23.5 137 274-417 61-220 (772)
84 PF15070 GOLGA2L5: Putative go 97.0 0.16 3.5E-06 57.5 23.5 19 299-317 49-67 (617)
85 PF12128 DUF3584: Protein of u 97.0 0.2 4.3E-06 60.4 25.6 16 271-286 601-616 (1201)
86 PF12128 DUF3584: Protein of u 97.0 0.15 3.2E-06 61.4 24.3 27 311-337 682-708 (1201)
87 PF04564 U-box: U-box domain; 97.0 0.00043 9.3E-09 57.0 2.3 47 466-512 3-56 (73)
88 KOG0994|consensus 97.0 0.38 8.3E-06 57.6 26.4 12 350-361 1620-1631(1758)
89 PRK04778 septation ring format 97.0 0.51 1.1E-05 52.6 26.7 94 249-342 142-244 (569)
90 PF09730 BicD: Microtubule-ass 97.0 0.18 4E-06 57.9 23.5 115 298-419 32-149 (717)
91 KOG0982|consensus 97.0 0.16 3.4E-06 55.2 21.6 213 214-428 183-419 (502)
92 COG4372 Uncharacterized protei 96.9 0.7 1.5E-05 50.0 26.0 54 298-351 135-191 (499)
93 KOG0980|consensus 96.9 0.45 9.7E-06 55.6 26.0 95 327-424 412-506 (980)
94 KOG4360|consensus 96.9 0.049 1.1E-06 60.0 17.7 125 300-424 166-301 (596)
95 COG0419 SbcC ATPase involved i 96.9 0.78 1.7E-05 53.7 28.7 9 497-505 457-465 (908)
96 PF06160 EzrA: Septation ring 96.9 0.3 6.5E-06 54.4 24.0 158 273-430 248-432 (560)
97 COG0419 SbcC ATPase involved i 96.9 0.61 1.3E-05 54.5 27.5 8 468-475 458-465 (908)
98 COG4942 Membrane-bound metallo 96.9 0.96 2.1E-05 49.3 27.0 75 375-449 173-247 (420)
99 COG1340 Uncharacterized archae 96.8 0.35 7.6E-06 50.4 22.3 23 408-430 134-156 (294)
100 KOG0980|consensus 96.8 0.54 1.2E-05 54.9 25.5 68 331-405 455-522 (980)
101 PRK11281 hypothetical protein; 96.8 0.27 5.8E-06 59.1 24.1 96 248-343 61-164 (1113)
102 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.8 0.32 7E-06 44.4 19.6 88 300-401 3-90 (132)
103 PF15619 Lebercilin: Ciliary p 96.8 0.59 1.3E-05 45.8 22.6 95 300-394 12-106 (194)
104 PF00038 Filament: Intermediat 96.8 0.72 1.6E-05 46.7 26.8 16 413-428 263-278 (312)
105 TIGR01005 eps_transp_fam exopo 96.8 0.26 5.6E-06 56.1 23.0 58 274-331 205-268 (754)
106 KOG0964|consensus 96.8 0.27 5.8E-06 57.9 22.9 176 274-449 171-365 (1200)
107 PF12678 zf-rbx1: RING-H2 zinc 96.8 0.00073 1.6E-08 55.9 1.9 24 480-504 50-73 (73)
108 KOG4674|consensus 96.7 0.53 1.1E-05 58.7 26.1 122 328-449 136-261 (1822)
109 PF00038 Filament: Intermediat 96.7 0.84 1.8E-05 46.2 25.9 16 246-261 24-39 (312)
110 PRK11281 hypothetical protein; 96.7 0.31 6.8E-06 58.6 23.6 15 379-393 194-208 (1113)
111 TIGR01843 type_I_hlyD type I s 96.7 1 2.2E-05 46.6 24.6 35 368-402 201-235 (423)
112 PF05701 WEMBL: Weak chloropla 96.7 0.9 2E-05 50.3 25.4 134 241-374 219-355 (522)
113 KOG4673|consensus 96.7 0.81 1.8E-05 52.5 24.9 100 319-421 451-553 (961)
114 KOG0976|consensus 96.6 0.5 1.1E-05 54.8 23.3 86 275-360 139-229 (1265)
115 KOG2177|consensus 96.6 0.00074 1.6E-08 63.0 1.1 38 466-504 12-54 (386)
116 TIGR03185 DNA_S_dndD DNA sulfu 96.6 0.98 2.1E-05 51.0 25.6 10 274-283 213-222 (650)
117 PF15254 CCDC14: Coiled-coil d 96.6 0.23 5E-06 57.2 20.5 136 274-416 398-554 (861)
118 KOG0018|consensus 96.6 0.43 9.3E-06 56.7 22.8 103 300-405 303-409 (1141)
119 PF10174 Cast: RIM-binding pro 96.5 1.8 3.9E-05 50.5 27.6 87 307-393 322-408 (775)
120 KOG0311|consensus 96.5 0.00043 9.4E-09 72.7 -1.1 40 466-505 42-87 (381)
121 TIGR01005 eps_transp_fam exopo 96.5 0.26 5.7E-06 56.1 20.8 48 241-289 202-249 (754)
122 TIGR03007 pepcterm_ChnLen poly 96.5 0.42 9.1E-06 51.5 21.3 107 239-356 167-289 (498)
123 KOG0999|consensus 96.5 0.86 1.9E-05 51.2 23.4 145 273-420 11-178 (772)
124 PRK01156 chromosome segregatio 96.4 2 4.3E-05 49.9 27.5 14 66-79 28-41 (895)
125 PRK10361 DNA recombination pro 96.4 1.3 2.9E-05 48.9 24.6 102 305-407 58-163 (475)
126 KOG0963|consensus 96.4 0.88 1.9E-05 51.5 23.3 40 410-450 315-354 (629)
127 KOG0995|consensus 96.4 2.5 5.4E-05 47.6 29.0 76 318-393 291-369 (581)
128 PF09730 BicD: Microtubule-ass 96.3 0.55 1.2E-05 54.2 21.6 114 272-394 29-145 (717)
129 TIGR00570 cdk7 CDK-activating 96.3 0.0021 4.5E-08 66.8 2.4 35 479-513 25-61 (309)
130 KOG0977|consensus 96.3 1.2 2.6E-05 50.0 23.5 41 372-412 157-200 (546)
131 PRK10929 putative mechanosensi 96.3 1.4 3.1E-05 53.1 25.7 11 251-261 27-37 (1109)
132 KOG0612|consensus 96.3 0.86 1.9E-05 54.9 23.4 26 34-60 207-232 (1317)
133 PF10174 Cast: RIM-binding pro 96.3 1.9 4.1E-05 50.3 25.9 100 307-406 287-400 (775)
134 PF04849 HAP1_N: HAP1 N-termin 96.2 0.5 1.1E-05 49.5 18.9 49 337-385 215-263 (306)
135 KOG0979|consensus 96.2 1.8 3.9E-05 51.4 24.9 9 32-40 20-28 (1072)
136 TIGR03017 EpsF chain length de 96.2 1 2.2E-05 47.7 21.6 44 274-317 182-232 (444)
137 COG4477 EzrA Negative regulato 96.2 2.1 4.5E-05 48.0 24.1 116 312-430 314-435 (570)
138 COG5222 Uncharacterized conser 96.1 0.0022 4.8E-08 66.4 1.5 39 467-505 274-318 (427)
139 PF08317 Spc7: Spc7 kinetochor 96.1 1.5 3.3E-05 45.6 22.1 30 316-345 158-187 (325)
140 PF05911 DUF869: Plant protein 96.1 2.1 4.5E-05 50.0 24.9 138 244-396 21-160 (769)
141 PF05667 DUF812: Protein of un 96.1 0.25 5.5E-06 55.7 17.3 122 301-422 395-529 (594)
142 PF04156 IncA: IncA protein; 96.1 0.46 1E-05 45.0 16.7 41 302-342 83-123 (191)
143 PF04111 APG6: Autophagy prote 96.1 0.1 2.3E-06 54.2 13.3 90 309-405 45-134 (314)
144 PF05010 TACC: Transforming ac 96.1 1.8 3.8E-05 43.1 24.6 140 300-449 55-205 (207)
145 KOG0287|consensus 96.0 0.0016 3.5E-08 68.3 -0.2 46 466-512 22-74 (442)
146 TIGR02680 conserved hypothetic 96.0 4.4 9.5E-05 50.0 28.2 15 247-261 742-756 (1353)
147 TIGR02680 conserved hypothetic 95.9 1.7 3.7E-05 53.4 24.4 106 296-405 219-325 (1353)
148 KOG0964|consensus 95.9 4.3 9.3E-05 48.4 26.2 127 300-426 258-432 (1200)
149 KOG4643|consensus 95.9 3.1 6.7E-05 49.7 24.9 52 331-382 411-462 (1195)
150 TIGR01000 bacteriocin_acc bact 95.9 1.4 3.1E-05 47.5 21.2 34 228-261 84-118 (457)
151 PF15619 Lebercilin: Ciliary p 95.9 2 4.4E-05 42.1 22.7 51 296-346 57-107 (194)
152 PF11789 zf-Nse: Zinc-finger o 95.8 0.0034 7.3E-08 50.2 1.0 39 466-504 10-57 (57)
153 PF12718 Tropomyosin_1: Tropom 95.8 1.6 3.5E-05 40.7 19.6 59 394-452 76-134 (143)
154 KOG0979|consensus 95.8 1.6 3.5E-05 51.8 22.4 103 300-405 181-283 (1072)
155 KOG4807|consensus 95.8 1.1 2.3E-05 48.7 19.4 87 270-368 291-382 (593)
156 KOG1103|consensus 95.8 1.8 3.9E-05 46.5 20.8 128 302-432 141-279 (561)
157 PF09787 Golgin_A5: Golgin sub 95.8 1.5 3.2E-05 48.5 21.3 171 229-402 105-306 (511)
158 TIGR03185 DNA_S_dndD DNA sulfu 95.7 3.1 6.7E-05 47.0 24.1 21 241-261 203-223 (650)
159 PF09755 DUF2046: Uncharacteri 95.7 3.3 7.2E-05 43.6 24.0 58 372-429 115-173 (310)
160 KOG0802|consensus 95.7 0.005 1.1E-07 67.9 1.7 38 467-505 291-338 (543)
161 COG5185 HEC1 Protein involved 95.5 2.5 5.5E-05 46.9 21.4 55 322-376 369-423 (622)
162 KOG2879|consensus 95.5 0.0065 1.4E-07 62.3 1.8 40 466-505 238-284 (298)
163 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 0.57 1.2E-05 42.8 14.2 69 273-341 31-100 (132)
164 TIGR00634 recN DNA repair prot 95.5 2.2 4.8E-05 47.4 21.5 13 380-392 304-316 (563)
165 PF06008 Laminin_I: Laminin Do 95.5 3.2 6.9E-05 41.7 24.1 18 337-354 125-142 (264)
166 PF13863 DUF4200: Domain of un 95.4 1.8 4E-05 38.3 17.6 104 305-411 5-108 (126)
167 KOG0995|consensus 95.3 4.2 9.2E-05 45.9 22.6 26 376-401 307-332 (581)
168 PF12795 MscS_porin: Mechanose 95.3 3.2 6.9E-05 41.2 19.7 129 302-430 80-210 (240)
169 PF08317 Spc7: Spc7 kinetochor 95.2 4.6 9.9E-05 42.1 24.6 35 359-393 166-200 (325)
170 COG5152 Uncharacterized conser 95.2 0.0067 1.5E-07 59.9 0.9 39 466-505 195-238 (259)
171 KOG4172|consensus 95.2 0.0037 8E-08 50.4 -0.8 47 468-514 8-60 (62)
172 PF05911 DUF869: Plant protein 95.2 1.5 3.1E-05 51.2 19.2 126 243-368 557-692 (769)
173 KOG4807|consensus 95.1 6.6 0.00014 42.9 23.8 61 327-394 420-480 (593)
174 PF13514 AAA_27: AAA domain 95.1 5.3 0.00011 48.0 24.2 37 300-336 736-772 (1111)
175 PRK09841 cryptic autophosphory 95.1 0.8 1.7E-05 52.4 16.8 19 240-258 202-220 (726)
176 PF04012 PspA_IM30: PspA/IM30 95.0 3.7 8.1E-05 39.9 23.9 117 293-411 21-139 (221)
177 COG4477 EzrA Negative regulato 95.0 7.9 0.00017 43.6 25.5 29 245-273 169-197 (570)
178 PF13870 DUF4201: Domain of un 95.0 3.3 7.2E-05 39.3 23.2 89 336-424 43-131 (177)
179 KOG0804|consensus 95.0 0.9 1.9E-05 49.8 15.9 30 315-344 348-377 (493)
180 KOG0804|consensus 94.9 1.6 3.5E-05 48.0 17.6 51 369-419 367-417 (493)
181 PF05622 HOOK: HOOK protein; 94.9 0.007 1.5E-07 68.6 0.0 54 240-293 267-324 (713)
182 PF05384 DegS: Sensor protein 94.9 3.8 8.1E-05 39.4 20.9 121 300-420 20-148 (159)
183 smart00787 Spc7 Spc7 kinetocho 94.9 4.4 9.5E-05 42.5 20.2 33 361-393 163-195 (312)
184 PF10473 CENP-F_leu_zip: Leuci 94.8 3.6 7.8E-05 38.8 20.5 59 355-420 58-116 (140)
185 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.02 4.3E-07 57.6 3.0 47 466-514 112-169 (260)
186 PF13851 GAS: Growth-arrest sp 94.8 4.4 9.6E-05 39.8 22.9 61 296-356 23-83 (201)
187 PRK11519 tyrosine kinase; Prov 94.8 1.4 3E-05 50.5 17.8 32 297-328 264-295 (719)
188 PF10186 Atg14: UV radiation r 94.8 3.9 8.4E-05 40.5 18.9 38 308-345 64-101 (302)
189 PF10186 Atg14: UV radiation r 94.8 4.7 0.0001 40.0 21.4 25 298-322 18-42 (302)
190 PF04849 HAP1_N: HAP1 N-termin 94.8 2.9 6.3E-05 44.0 18.6 43 308-350 161-203 (306)
191 KOG0249|consensus 94.8 2.4 5.2E-05 49.0 19.1 109 310-419 142-258 (916)
192 KOG1853|consensus 94.8 6 0.00013 41.0 21.6 55 304-361 49-103 (333)
193 PF15066 CAGE1: Cancer-associa 94.8 3.7 8.1E-05 45.4 19.8 100 247-346 310-436 (527)
194 PF10481 CENP-F_N: Cenp-F N-te 94.7 1.8 3.8E-05 45.1 16.4 39 318-356 57-95 (307)
195 PF11932 DUF3450: Protein of u 94.7 2.8 6E-05 41.9 17.7 60 352-411 38-97 (251)
196 PF06008 Laminin_I: Laminin Do 94.7 5.4 0.00012 40.1 26.0 84 272-357 26-109 (264)
197 PF11559 ADIP: Afadin- and alp 94.7 3.6 7.8E-05 38.0 17.9 90 272-361 30-120 (151)
198 TIGR00998 8a0101 efflux pump m 94.6 3.3 7.2E-05 42.0 18.3 50 295-344 75-124 (334)
199 PF06785 UPF0242: Uncharacteri 94.6 4.7 0.0001 43.1 19.5 62 337-405 101-162 (401)
200 PF10168 Nup88: Nuclear pore c 94.6 3.1 6.7E-05 48.2 19.9 19 293-311 558-576 (717)
201 KOG1937|consensus 94.6 9.3 0.0002 42.3 23.7 20 242-261 260-279 (521)
202 PF04156 IncA: IncA protein; 94.6 3.2 7E-05 39.3 17.0 36 305-340 79-114 (191)
203 COG5243 HRD1 HRD ubiquitin lig 94.5 0.021 4.5E-07 61.0 2.3 44 461-505 281-342 (491)
204 PF01576 Myosin_tail_1: Myosin 94.5 0.01 2.2E-07 69.0 0.0 142 274-422 289-450 (859)
205 KOG2660|consensus 94.5 0.018 3.8E-07 60.3 1.6 38 467-505 15-58 (331)
206 COG3883 Uncharacterized protei 94.4 7.1 0.00015 40.4 22.8 17 394-410 144-160 (265)
207 KOG0946|consensus 94.4 7.6 0.00017 45.7 22.1 54 303-356 660-713 (970)
208 KOG4643|consensus 94.4 15 0.00033 44.2 26.8 21 319-339 441-461 (1195)
209 PRK10246 exonuclease subunit S 94.4 16 0.00034 44.1 29.1 19 241-259 231-249 (1047)
210 PRK10884 SH3 domain-containing 94.3 0.65 1.4E-05 46.0 12.1 36 295-330 88-123 (206)
211 PF05667 DUF812: Protein of un 94.3 12 0.00026 42.7 23.9 41 298-338 340-380 (594)
212 PF05010 TACC: Transforming ac 94.2 6.6 0.00014 39.2 22.4 113 302-425 18-131 (207)
213 PF05483 SCP-1: Synaptonemal c 94.2 14 0.0003 42.9 23.4 40 300-339 268-307 (786)
214 KOG0163|consensus 94.2 9 0.0002 45.0 21.9 85 274-360 844-928 (1259)
215 KOG4628|consensus 94.1 0.027 5.8E-07 59.6 2.1 38 468-505 230-275 (348)
216 COG1842 PspA Phage shock prote 94.1 6.4 0.00014 39.6 18.6 114 293-422 22-137 (225)
217 COG3206 GumC Uncharacterized p 94.0 8.1 0.00018 41.7 20.6 89 272-360 204-299 (458)
218 KOG0946|consensus 94.0 7.3 0.00016 45.8 20.8 30 302-331 666-695 (970)
219 KOG0962|consensus 94.0 21 0.00045 44.1 26.8 41 253-293 801-842 (1294)
220 KOG0962|consensus 94.0 15 0.00033 45.2 24.3 79 296-374 874-966 (1294)
221 PRK10476 multidrug resistance 93.9 4.9 0.00011 41.5 18.0 35 356-390 138-172 (346)
222 PRK10698 phage shock protein P 93.8 7.8 0.00017 38.6 24.1 120 293-414 22-143 (222)
223 PF04111 APG6: Autophagy prote 93.7 1.3 2.8E-05 46.2 13.5 41 353-393 47-87 (314)
224 PF00769 ERM: Ezrin/radixin/mo 93.7 5.1 0.00011 40.5 17.2 90 273-364 8-97 (246)
225 PF04912 Dynamitin: Dynamitin 93.7 6.5 0.00014 41.9 18.8 36 300-335 246-282 (388)
226 PF10168 Nup88: Nuclear pore c 93.6 5.6 0.00012 46.2 19.4 22 407-428 634-655 (717)
227 PF10481 CENP-F_N: Cenp-F N-te 93.6 9 0.00019 40.1 18.7 97 294-411 12-122 (307)
228 KOG0288|consensus 93.5 3.1 6.6E-05 45.5 16.0 57 297-353 17-73 (459)
229 PF09728 Taxilin: Myosin-like 93.5 11 0.00024 39.4 25.6 18 321-338 135-152 (309)
230 COG3206 GumC Uncharacterized p 93.5 13 0.00028 40.2 21.2 49 245-293 207-255 (458)
231 PLN03229 acetyl-coenzyme A car 93.5 5.3 0.00012 46.5 18.8 12 88-99 127-138 (762)
232 KOG0018|consensus 93.5 11 0.00023 45.5 21.5 39 300-338 317-355 (1141)
233 PRK15178 Vi polysaccharide exp 93.5 3 6.4E-05 45.8 16.1 107 274-384 253-379 (434)
234 PF10473 CENP-F_leu_zip: Leuci 93.4 7 0.00015 36.9 19.5 42 300-341 24-65 (140)
235 TIGR00634 recN DNA repair prot 93.4 16 0.00034 40.8 22.5 11 67-77 28-38 (563)
236 KOG1003|consensus 93.4 9.3 0.0002 38.2 18.8 71 296-367 84-154 (205)
237 smart00787 Spc7 Spc7 kinetocho 93.4 12 0.00026 39.3 24.7 39 411-449 224-262 (312)
238 PF13514 AAA_27: AAA domain 93.4 24 0.00051 42.7 25.4 47 245-291 131-178 (1111)
239 COG1340 Uncharacterized archae 93.3 12 0.00026 39.3 26.2 116 300-430 138-253 (294)
240 KOG0249|consensus 93.3 5.7 0.00012 46.1 18.4 91 318-411 167-257 (916)
241 TIGR02977 phageshock_pspA phag 93.3 9.2 0.0002 37.7 24.2 120 293-414 22-143 (219)
242 KOG1853|consensus 93.2 12 0.00026 38.9 19.4 70 326-405 50-119 (333)
243 PF13166 AAA_13: AAA domain 93.2 13 0.00027 42.1 21.1 19 300-318 329-347 (712)
244 cd07596 BAR_SNX The Bin/Amphip 93.2 7.6 0.00016 36.4 19.5 29 376-404 109-137 (218)
245 PF00901 Orbi_VP5: Orbivirus o 93.1 4.7 0.0001 44.9 17.0 118 255-377 71-189 (508)
246 PF01576 Myosin_tail_1: Myosin 93.1 0.026 5.7E-07 65.7 0.0 171 245-419 16-201 (859)
247 PRK10869 recombination and rep 93.1 13 0.00028 41.7 20.9 10 250-259 157-166 (553)
248 PF15397 DUF4618: Domain of un 93.1 12 0.00026 38.6 21.2 117 308-427 7-135 (258)
249 KOG4593|consensus 93.0 21 0.00047 41.4 25.4 47 319-365 177-223 (716)
250 PF05622 HOOK: HOOK protein; 93.0 0.027 5.9E-07 64.0 0.0 80 370-449 318-400 (713)
251 KOG0825|consensus 93.0 0.03 6.5E-07 64.2 0.3 43 469-512 125-177 (1134)
252 KOG0243|consensus 93.0 9.6 0.00021 45.9 20.3 127 303-429 407-549 (1041)
253 KOG3039|consensus 92.9 0.067 1.4E-06 54.6 2.5 47 466-513 220-277 (303)
254 KOG0243|consensus 92.9 17 0.00036 44.0 22.0 13 108-120 93-105 (1041)
255 PF05483 SCP-1: Synaptonemal c 92.8 23 0.00051 41.1 23.0 115 300-421 443-557 (786)
256 KOG0288|consensus 92.8 6.8 0.00015 42.9 17.2 70 300-369 6-75 (459)
257 PF15294 Leu_zip: Leucine zipp 92.8 14 0.00031 38.5 20.1 64 274-337 5-75 (278)
258 PF08614 ATG16: Autophagy prot 92.6 2.1 4.5E-05 41.4 12.2 15 274-288 92-106 (194)
259 KOG1265|consensus 92.6 14 0.00029 44.2 20.3 84 330-413 1065-1150(1189)
260 PRK15422 septal ring assembly 92.5 1.9 4.1E-05 37.2 10.3 65 298-362 9-73 (79)
261 KOG1937|consensus 92.4 21 0.00046 39.7 21.3 83 318-419 297-380 (521)
262 PF10146 zf-C4H2: Zinc finger- 92.3 6.6 0.00014 39.7 15.7 20 485-505 197-216 (230)
263 KOG1813|consensus 92.3 0.045 9.8E-07 56.8 0.4 39 466-505 240-283 (313)
264 TIGR03794 NHPM_micro_HlyD NHPM 92.3 14 0.00031 39.3 19.1 7 231-237 61-67 (421)
265 KOG4360|consensus 92.2 6.9 0.00015 43.9 16.7 76 329-407 220-295 (596)
266 PF03148 Tektin: Tektin family 92.1 13 0.00027 40.0 18.3 118 300-428 251-368 (384)
267 TIGR00618 sbcc exonuclease Sbc 92.0 33 0.00072 41.1 26.5 11 466-476 500-510 (1042)
268 PF00769 ERM: Ezrin/radixin/mo 91.9 16 0.00034 37.1 17.9 40 297-336 9-48 (246)
269 COG5185 HEC1 Protein involved 91.6 27 0.00059 39.2 22.5 27 373-399 333-359 (622)
270 KOG0993|consensus 91.5 26 0.00055 38.8 20.8 53 300-352 320-373 (542)
271 KOG0297|consensus 91.5 0.081 1.8E-06 56.5 1.2 39 466-505 20-64 (391)
272 KOG3564|consensus 91.3 2.3 5E-05 47.2 12.0 83 327-409 27-109 (604)
273 PF10146 zf-C4H2: Zinc finger- 91.3 7.9 0.00017 39.1 14.9 49 329-377 40-88 (230)
274 KOG1571|consensus 91.3 0.045 9.8E-07 57.9 -0.9 45 466-514 304-353 (355)
275 PF13949 ALIX_LYPXL_bnd: ALIX 91.3 17 0.00038 36.4 21.9 85 326-410 142-230 (296)
276 PF06637 PV-1: PV-1 protein (P 91.2 11 0.00023 41.1 16.4 105 327-432 262-376 (442)
277 PF11932 DUF3450: Protein of u 91.2 7.8 0.00017 38.7 14.8 67 359-425 31-97 (251)
278 PF08614 ATG16: Autophagy prot 91.1 3.4 7.5E-05 39.9 11.9 27 381-407 148-174 (194)
279 TIGR01010 BexC_CtrB_KpsE polys 91.1 13 0.00027 38.9 16.9 16 241-256 71-86 (362)
280 PF15066 CAGE1: Cancer-associa 91.0 31 0.00066 38.6 24.3 14 304-317 342-355 (527)
281 COG3524 KpsE Capsule polysacch 90.8 2.7 5.9E-05 44.5 11.4 114 269-385 182-317 (372)
282 cd07623 BAR_SNX1_2 The Bin/Amp 90.8 18 0.0004 35.7 21.9 71 300-370 19-94 (224)
283 PF09325 Vps5: Vps5 C terminal 90.7 16 0.00036 35.2 21.4 21 345-365 81-101 (236)
284 KOG1002|consensus 90.7 0.094 2E-06 58.2 0.8 40 466-505 535-583 (791)
285 COG5540 RING-finger-containing 90.7 0.15 3.2E-06 53.4 2.2 38 468-505 324-369 (374)
286 KOG1785|consensus 90.6 0.091 2E-06 56.7 0.6 37 469-505 371-413 (563)
287 cd07627 BAR_Vps5p The Bin/Amph 90.6 18 0.0004 35.4 24.1 45 388-432 119-163 (216)
288 KOG4159|consensus 90.6 0.12 2.6E-06 55.7 1.5 39 466-505 83-126 (398)
289 PRK09841 cryptic autophosphory 90.6 12 0.00026 43.1 17.4 19 385-403 347-365 (726)
290 KOG0298|consensus 90.5 1.9 4E-05 52.5 11.1 39 466-505 1152-1196(1394)
291 PF07106 TBPIP: Tat binding pr 90.4 1.2 2.6E-05 42.0 7.8 71 274-344 90-161 (169)
292 PRK12704 phosphodiesterase; Pr 90.4 18 0.00039 40.5 18.1 32 321-352 117-148 (520)
293 PF12861 zf-Apc11: Anaphase-pr 90.4 0.18 3.8E-06 43.9 2.1 26 480-505 52-79 (85)
294 PF09789 DUF2353: Uncharacteri 90.4 27 0.00059 37.1 23.5 78 352-433 126-224 (319)
295 cd07627 BAR_Vps5p The Bin/Amph 90.3 19 0.00042 35.3 23.7 70 300-369 65-135 (216)
296 PF09486 HrpB7: Bacterial type 90.3 18 0.00039 34.8 19.5 103 304-406 5-108 (158)
297 PF08581 Tup_N: Tup N-terminal 90.2 5.9 0.00013 34.0 11.1 74 312-395 2-75 (79)
298 PRK10361 DNA recombination pro 90.2 36 0.00077 38.1 25.3 62 329-393 61-122 (475)
299 COG5220 TFB3 Cdk activating ki 90.1 0.086 1.9E-06 53.7 -0.1 39 467-505 10-61 (314)
300 PRK10884 SH3 domain-containing 90.1 2.9 6.3E-05 41.4 10.5 19 274-292 90-108 (206)
301 PF07111 HCR: Alpha helical co 89.9 45 0.00098 38.9 25.5 75 328-405 151-225 (739)
302 KOG4265|consensus 89.7 0.18 4E-06 53.4 2.0 49 466-515 289-343 (349)
303 KOG2129|consensus 89.7 20 0.00044 39.6 17.0 37 302-347 181-217 (552)
304 KOG1039|consensus 89.6 0.17 3.6E-06 53.7 1.6 40 466-505 160-218 (344)
305 PF07106 TBPIP: Tat binding pr 89.5 3.7 7.9E-05 38.7 10.3 64 300-363 72-137 (169)
306 PF10212 TTKRSYEDQ: Predicted 89.4 42 0.00092 37.9 23.4 67 244-318 265-336 (518)
307 KOG1850|consensus 89.4 34 0.00073 36.7 24.2 42 381-422 226-267 (391)
308 PF05557 MAD: Mitotic checkpoi 89.3 0.11 2.4E-06 59.2 0.0 32 374-405 375-406 (722)
309 KOG0824|consensus 89.3 0.15 3.2E-06 53.3 0.9 33 472-505 18-50 (324)
310 PRK03598 putative efflux pump 89.2 19 0.00041 37.0 16.0 35 356-390 131-165 (331)
311 PF14362 DUF4407: Domain of un 89.0 12 0.00027 38.1 14.5 27 372-398 184-210 (301)
312 PF04912 Dynamitin: Dynamitin 89.0 35 0.00077 36.4 18.6 18 241-258 210-227 (388)
313 PLN03188 kinesin-12 family pro 88.8 71 0.0015 39.7 27.9 125 335-463 1100-1248(1320)
314 PF05557 MAD: Mitotic checkpoi 88.8 0.55 1.2E-05 53.6 5.1 8 25-32 39-46 (722)
315 COG2433 Uncharacterized conser 88.8 22 0.00048 40.8 17.1 76 375-450 427-505 (652)
316 PF09755 DUF2046: Uncharacteri 88.7 36 0.00078 36.1 27.9 21 394-414 181-201 (310)
317 COG3883 Uncharacterized protei 88.7 33 0.00071 35.7 23.3 35 301-335 60-94 (265)
318 PF10498 IFT57: Intra-flagella 88.7 23 0.00049 38.1 16.6 122 311-435 217-344 (359)
319 PF09787 Golgin_A5: Golgin sub 88.7 39 0.00086 37.5 19.0 19 243-261 158-176 (511)
320 PF10498 IFT57: Intra-flagella 88.6 32 0.00068 37.0 17.6 38 400-437 282-319 (359)
321 TIGR01069 mutS2 MutS2 family p 88.5 13 0.00029 43.4 16.0 34 33-66 191-231 (771)
322 KOG4677|consensus 88.5 31 0.00067 38.5 17.5 48 383-430 308-355 (554)
323 PF12329 TMF_DNA_bd: TATA elem 88.2 5.5 0.00012 33.5 9.3 20 348-367 4-23 (74)
324 PF13870 DUF4201: Domain of un 88.0 24 0.00053 33.4 22.5 91 317-407 45-135 (177)
325 KOG1003|consensus 87.8 32 0.00069 34.5 23.9 72 339-414 82-153 (205)
326 PF13166 AAA_13: AAA domain 87.8 54 0.0012 37.1 24.7 15 47-61 59-73 (712)
327 KOG0982|consensus 87.8 50 0.0011 36.7 22.6 47 373-419 307-353 (502)
328 PF09728 Taxilin: Myosin-like 87.4 41 0.00088 35.3 23.7 52 337-388 204-255 (309)
329 PF06785 UPF0242: Uncharacteri 87.3 47 0.001 35.9 20.0 25 371-395 149-173 (401)
330 COG5283 Phage-related tail pro 87.3 64 0.0014 39.8 20.5 91 311-401 61-151 (1213)
331 COG4717 Uncharacterized conser 87.3 68 0.0015 38.5 20.2 98 213-310 128-229 (984)
332 PF12252 SidE: Dot/Icm substra 87.2 44 0.00095 40.9 18.8 151 239-393 1007-1176(1439)
333 COG3074 Uncharacterized protei 87.1 10 0.00023 32.3 10.2 62 300-361 11-72 (79)
334 PF04012 PspA_IM30: PspA/IM30 87.0 31 0.00068 33.5 19.4 55 370-424 84-138 (221)
335 KOG2930|consensus 86.9 0.33 7.2E-06 43.8 1.5 25 480-505 81-105 (114)
336 PRK11519 tyrosine kinase; Prov 86.9 45 0.00097 38.5 18.7 21 238-258 200-220 (719)
337 KOG4593|consensus 86.8 70 0.0015 37.4 28.1 28 233-260 48-75 (716)
338 cd07664 BAR_SNX2 The Bin/Amphi 86.8 38 0.00082 34.3 22.8 72 299-370 28-104 (234)
339 KOG2751|consensus 86.8 15 0.00033 40.4 14.0 90 238-341 148-238 (447)
340 PF15035 Rootletin: Ciliary ro 86.7 33 0.00072 33.5 17.5 57 300-356 74-130 (182)
341 PRK00409 recombination and DNA 86.6 25 0.00055 41.2 16.7 20 368-387 575-594 (782)
342 KOG2129|consensus 86.6 38 0.00082 37.6 16.7 16 271-286 44-59 (552)
343 KOG1962|consensus 86.5 9.8 0.00021 38.4 11.6 57 356-412 151-207 (216)
344 TIGR01010 BexC_CtrB_KpsE polys 86.5 30 0.00066 36.1 15.8 45 274-318 181-232 (362)
345 PF07111 HCR: Alpha helical co 86.3 75 0.0016 37.3 24.1 25 399-423 576-600 (739)
346 PF02841 GBP_C: Guanylate-bind 86.2 42 0.00091 34.5 16.4 6 416-421 288-293 (297)
347 PF12325 TMF_TATA_bd: TATA ele 86.2 27 0.00059 32.1 14.3 34 300-333 23-56 (120)
348 KOG1941|consensus 85.9 6.5 0.00014 42.9 10.6 39 467-505 365-413 (518)
349 COG2433 Uncharacterized conser 85.9 22 0.00047 40.8 15.0 29 378-406 475-503 (652)
350 TIGR02338 gimC_beta prefoldin, 85.6 25 0.00054 31.1 13.5 36 387-422 70-105 (110)
351 PF05300 DUF737: Protein of un 85.5 40 0.00087 33.3 15.2 95 331-433 82-177 (187)
352 COG1842 PspA Phage shock prote 85.5 44 0.00095 33.8 19.7 45 273-319 27-71 (225)
353 KOG4275|consensus 85.4 0.095 2.1E-06 54.6 -3.1 43 467-514 300-348 (350)
354 TIGR02231 conserved hypothetic 85.3 9.3 0.0002 42.1 11.9 32 301-332 72-103 (525)
355 PF12795 MscS_porin: Mechanose 85.1 43 0.00092 33.3 20.7 122 295-416 80-210 (240)
356 PF07889 DUF1664: Protein of u 85.1 14 0.0003 34.4 11.1 67 369-435 53-119 (126)
357 PRK10869 recombination and rep 85.0 73 0.0016 35.9 22.0 11 300-310 185-195 (553)
358 PF06818 Fez1: Fez1; InterPro 84.8 46 0.00099 33.4 18.7 35 308-342 11-45 (202)
359 PF06005 DUF904: Protein of un 84.7 10 0.00023 31.9 9.3 36 300-335 18-53 (72)
360 KOG4460|consensus 84.7 41 0.00089 38.5 16.3 33 373-405 665-697 (741)
361 PF09325 Vps5: Vps5 C terminal 84.6 40 0.00086 32.5 22.9 46 324-369 110-155 (236)
362 KOG3091|consensus 84.4 13 0.00028 41.5 12.3 156 241-429 349-508 (508)
363 KOG0826|consensus 84.3 0.31 6.8E-06 51.4 0.1 48 468-516 301-356 (357)
364 PF09738 DUF2051: Double stran 84.2 18 0.00039 38.1 12.8 88 273-360 80-172 (302)
365 PF14915 CCDC144C: CCDC144C pr 84.2 61 0.0013 34.4 21.5 146 305-450 4-189 (305)
366 PF14073 Cep57_CLD: Centrosome 84.2 45 0.00098 32.9 20.5 34 328-361 43-76 (178)
367 KOG3970|consensus 84.1 0.56 1.2E-05 47.6 1.7 46 460-505 41-102 (299)
368 PF07058 Myosin_HC-like: Myosi 84.0 64 0.0014 34.5 18.7 80 372-451 68-154 (351)
369 KOG4302|consensus 84.0 93 0.002 36.3 21.1 96 298-393 66-176 (660)
370 KOG4572|consensus 84.0 97 0.0021 37.2 19.2 74 268-341 952-1036(1424)
371 PRK15374 pathogenicity island 84.0 86 0.0019 35.9 22.2 75 246-320 98-175 (593)
372 KOG4438|consensus 83.9 76 0.0016 35.2 21.2 174 284-464 123-333 (446)
373 PF15290 Syntaphilin: Golgi-lo 83.9 44 0.00096 35.2 15.1 18 300-317 82-99 (305)
374 KOG1814|consensus 83.8 0.55 1.2E-05 50.9 1.6 40 466-505 183-237 (445)
375 PRK10698 phage shock protein P 83.7 50 0.0011 33.0 20.6 83 338-422 55-137 (222)
376 KOG1899|consensus 83.7 47 0.001 38.6 16.3 31 300-333 139-169 (861)
377 KOG4787|consensus 83.6 61 0.0013 37.4 17.1 131 298-429 330-483 (852)
378 KOG2114|consensus 82.9 1.1 2.3E-05 52.4 3.6 49 460-512 828-890 (933)
379 PF06248 Zw10: Centromere/kine 82.9 24 0.00051 39.6 13.9 22 298-319 74-95 (593)
380 KOG4809|consensus 82.8 96 0.0021 35.6 19.9 75 306-380 344-418 (654)
381 PF14197 Cep57_CLD_2: Centroso 82.7 17 0.00037 30.4 9.6 43 381-423 2-44 (69)
382 cd08915 V_Alix_like Protein-in 82.7 65 0.0014 33.6 23.1 85 327-411 192-281 (342)
383 KOG2264|consensus 82.6 3.1 6.7E-05 47.2 6.7 53 297-349 104-156 (907)
384 KOG1962|consensus 82.6 11 0.00024 38.0 10.0 59 385-447 135-193 (216)
385 PRK15136 multidrug efflux syst 82.6 68 0.0015 34.2 16.6 34 360-393 148-181 (390)
386 PF12325 TMF_TATA_bd: TATA ele 82.6 40 0.00087 31.0 15.4 30 310-339 19-48 (120)
387 KOG4302|consensus 82.4 92 0.002 36.3 18.3 24 238-261 66-89 (660)
388 PF13805 Pil1: Eisosome compon 82.2 56 0.0012 34.1 15.2 105 326-445 108-217 (271)
389 KOG0742|consensus 82.1 94 0.002 35.0 22.6 50 295-344 74-126 (630)
390 TIGR03752 conj_TIGR03752 integ 82.0 16 0.00034 40.7 11.8 45 300-344 59-103 (472)
391 TIGR00618 sbcc exonuclease Sbc 82.0 1.3E+02 0.0027 36.4 27.6 10 496-505 500-509 (1042)
392 PRK09343 prefoldin subunit bet 82.0 40 0.00087 30.6 14.9 36 387-422 74-109 (121)
393 PLN02939 transferase, transfer 81.9 80 0.0017 38.4 18.1 33 375-407 224-256 (977)
394 PLN03229 acetyl-coenzyme A car 81.8 1.2E+02 0.0026 36.0 23.2 36 274-309 433-471 (762)
395 KOG2817|consensus 81.7 0.85 1.8E-05 49.2 2.1 50 466-515 333-394 (394)
396 TIGR02971 heterocyst_DevB ABC 81.5 65 0.0014 32.8 18.8 34 358-391 123-156 (327)
397 PF09789 DUF2353: Uncharacteri 81.5 79 0.0017 33.7 21.3 91 300-390 16-113 (319)
398 PF09304 Cortex-I_coil: Cortex 81.4 29 0.00062 31.7 11.2 20 376-395 36-55 (107)
399 PF05700 BCAS2: Breast carcino 81.0 62 0.0013 32.2 16.7 95 257-351 84-180 (221)
400 KOG1001|consensus 80.8 0.54 1.2E-05 53.9 0.3 44 460-505 448-497 (674)
401 PF05529 Bap31: B-cell recepto 80.8 13 0.00029 35.6 9.7 27 406-432 155-181 (192)
402 TIGR03545 conserved hypothetic 80.8 22 0.00048 40.2 12.7 24 308-331 165-188 (555)
403 KOG4552|consensus 80.5 67 0.0015 32.8 14.5 28 378-405 68-95 (272)
404 TIGR00998 8a0101 efflux pump m 80.5 70 0.0015 32.5 17.0 17 306-322 107-123 (334)
405 PRK00409 recombination and DNA 80.4 55 0.0012 38.5 16.1 10 54-63 224-233 (782)
406 KOG4403|consensus 80.1 19 0.00041 39.9 11.4 118 241-370 253-377 (575)
407 KOG1899|consensus 79.9 1.2E+02 0.0025 35.6 17.6 48 279-326 141-193 (861)
408 PF10367 Vps39_2: Vacuolar sor 79.6 4.6 0.0001 34.1 5.5 25 466-490 77-108 (109)
409 PF10212 TTKRSYEDQ: Predicted 79.6 52 0.0011 37.2 14.8 90 340-432 418-507 (518)
410 TIGR02971 heterocyst_DevB ABC 79.6 76 0.0016 32.3 18.1 36 226-261 39-76 (327)
411 PF04728 LPP: Lipoprotein leuc 79.5 13 0.00028 30.3 7.6 45 300-347 3-47 (56)
412 TIGR03794 NHPM_micro_HlyD NHPM 79.3 93 0.002 33.2 19.0 36 226-261 81-117 (421)
413 PF10234 Cluap1: Clusterin-ass 79.2 47 0.001 34.5 13.5 22 240-261 41-62 (267)
414 PF09731 Mitofilin: Mitochondr 79.1 1.1E+02 0.0024 34.1 23.1 16 413-428 379-394 (582)
415 PF04782 DUF632: Protein of un 79.0 92 0.002 33.0 15.8 103 316-432 87-190 (312)
416 PF15294 Leu_zip: Leucine zipp 78.9 72 0.0016 33.5 14.7 43 300-342 132-174 (278)
417 PF07321 YscO: Type III secret 78.8 62 0.0013 30.9 20.0 12 321-332 50-61 (152)
418 PF00170 bZIP_1: bZIP transcri 78.7 15 0.00033 29.4 7.9 39 306-344 25-63 (64)
419 COG5194 APC11 Component of SCF 78.5 1.4 3E-05 38.4 1.9 25 480-505 54-78 (88)
420 PF14817 HAUS5: HAUS augmin-li 78.1 46 0.001 38.4 14.3 95 294-409 73-167 (632)
421 PF05290 Baculo_IE-1: Baculovi 78.0 11 0.00024 35.6 7.8 40 466-505 79-129 (140)
422 KOG4196|consensus 77.9 22 0.00047 33.5 9.6 80 262-342 17-116 (135)
423 PF13851 GAS: Growth-arrest sp 77.8 76 0.0016 31.3 22.7 32 353-384 97-128 (201)
424 PRK00888 ftsB cell division pr 77.7 7.7 0.00017 34.6 6.5 37 300-336 27-63 (105)
425 PF03962 Mnd1: Mnd1 family; I 77.7 64 0.0014 31.5 13.3 30 304-333 66-95 (188)
426 PF11180 DUF2968: Protein of u 77.7 57 0.0012 32.5 12.9 83 293-405 100-182 (192)
427 COG4026 Uncharacterized protei 77.4 19 0.00041 37.0 9.7 58 304-361 132-189 (290)
428 PF13094 CENP-Q: CENP-Q, a CEN 77.4 63 0.0014 30.2 12.9 48 300-347 27-74 (160)
429 PHA03096 p28-like protein; Pro 77.3 1.2 2.7E-05 46.1 1.5 38 468-505 179-231 (284)
430 COG3096 MukB Uncharacterized p 77.2 1.7E+02 0.0037 35.1 26.3 36 370-405 991-1026(1480)
431 PF13942 Lipoprotein_20: YfhG 77.2 25 0.00053 34.6 10.1 59 354-412 107-165 (179)
432 PF05377 FlaC_arch: Flagella a 77.2 9.7 0.00021 30.9 6.2 40 301-340 1-40 (55)
433 PF10805 DUF2730: Protein of u 76.8 25 0.00055 31.2 9.5 52 299-350 48-101 (106)
434 cd07665 BAR_SNX1 The Bin/Amphi 76.5 92 0.002 31.7 22.7 74 300-373 29-107 (234)
435 PF02841 GBP_C: Guanylate-bind 76.3 98 0.0021 31.8 23.8 20 321-340 148-167 (297)
436 PF12808 Mto2_bdg: Micro-tubul 75.7 10 0.00022 30.4 5.9 43 277-319 4-48 (52)
437 KOG4185|consensus 75.7 12 0.00026 37.9 8.1 26 480-505 239-264 (296)
438 PF05266 DUF724: Protein of un 75.5 69 0.0015 31.6 12.9 34 235-268 57-90 (190)
439 PRK02119 hypothetical protein; 75.5 21 0.00045 30.1 8.1 53 303-355 5-57 (73)
440 PF14570 zf-RING_4: RING/Ubox 75.4 1.8 4E-05 34.0 1.7 26 480-505 20-45 (48)
441 PF12329 TMF_DNA_bd: TATA elem 75.3 35 0.00077 28.7 9.4 25 370-394 12-36 (74)
442 PF12761 End3: Actin cytoskele 75.2 27 0.00058 34.8 10.0 39 365-403 155-193 (195)
443 PF07851 TMPIT: TMPIT-like pro 75.2 27 0.00059 37.3 10.8 32 327-358 3-34 (330)
444 PRK00846 hypothetical protein; 75.1 21 0.00045 30.7 8.1 56 303-358 9-64 (77)
445 PRK03598 putative efflux pump 75.0 98 0.0021 31.8 14.6 15 372-386 154-168 (331)
446 KOG1100|consensus 74.9 13 0.00028 36.9 7.9 40 470-514 161-206 (207)
447 KOG2991|consensus 74.8 42 0.00091 35.2 11.5 122 241-370 185-306 (330)
448 PF10267 Tmemb_cc2: Predicted 74.5 1.4E+02 0.003 32.8 16.9 22 85-106 60-85 (395)
449 PF05529 Bap31: B-cell recepto 74.5 12 0.00026 35.9 7.4 38 301-338 155-192 (192)
450 PF15450 DUF4631: Domain of un 74.5 1.6E+02 0.0035 33.5 25.5 89 331-419 225-326 (531)
451 PRK04406 hypothetical protein; 74.3 23 0.0005 30.0 8.1 52 304-355 8-59 (75)
452 cd08915 V_Alix_like Protein-in 74.3 1.2E+02 0.0025 31.7 25.7 86 274-361 74-166 (342)
453 TIGR01069 mutS2 MutS2 family p 74.2 86 0.0019 36.9 15.4 21 367-387 569-589 (771)
454 PF15397 DUF4618: Domain of un 74.0 1.2E+02 0.0025 31.6 24.9 19 432-450 199-217 (258)
455 KOG3990|consensus 73.7 19 0.00041 37.4 8.8 26 297-322 222-247 (305)
456 PF14932 HAUS-augmin3: HAUS au 73.5 66 0.0014 32.7 12.7 118 335-457 31-149 (256)
457 PF10482 CtIP_N: Tumour-suppre 73.5 78 0.0017 29.4 12.2 63 337-409 5-67 (120)
458 cd07596 BAR_SNX The Bin/Amphip 73.2 82 0.0018 29.5 23.3 73 321-393 89-161 (218)
459 KOG2685|consensus 73.2 1.6E+02 0.0034 32.7 18.6 36 324-359 274-309 (421)
460 PF08826 DMPK_coil: DMPK coile 73.1 40 0.00088 27.8 9.0 46 376-421 10-55 (61)
461 PF09738 DUF2051: Double stran 73.1 1E+02 0.0022 32.6 14.2 75 314-402 98-172 (302)
462 PF15290 Syntaphilin: Golgi-lo 73.1 66 0.0014 34.0 12.6 89 263-374 54-152 (305)
463 PF11559 ADIP: Afadin- and alp 73.1 78 0.0017 29.2 18.5 31 384-414 73-103 (151)
464 PTZ00121 MAEBL; Provisional 72.9 2.9E+02 0.0062 35.6 24.5 9 76-84 876-884 (2084)
465 COG3096 MukB Uncharacterized p 72.8 2.2E+02 0.0048 34.3 20.2 55 299-353 990-1044(1480)
466 PRK00736 hypothetical protein; 72.8 21 0.00046 29.6 7.4 51 306-356 4-54 (68)
467 KOG0104|consensus 72.4 1.6E+02 0.0035 35.2 16.6 140 271-422 635-788 (902)
468 PF04871 Uso1_p115_C: Uso1 / p 72.3 84 0.0018 29.3 15.0 99 299-410 7-110 (136)
469 cd09234 V_HD-PTP_like Protein- 72.3 1.3E+02 0.0029 31.5 22.8 83 326-410 189-274 (337)
470 PF09744 Jnk-SapK_ap_N: JNK_SA 72.2 96 0.0021 29.9 16.9 15 381-395 86-100 (158)
471 PRK10722 hypothetical protein; 72.0 17 0.00037 37.4 8.0 89 310-412 123-211 (247)
472 TIGR02231 conserved hypothetic 72.0 42 0.00091 37.1 11.7 21 222-242 27-47 (525)
473 PF09731 Mitofilin: Mitochondr 72.0 1.7E+02 0.0037 32.7 24.8 19 101-119 150-168 (582)
474 PRK00295 hypothetical protein; 71.9 28 0.00061 28.9 7.9 51 305-355 3-53 (68)
475 PF04582 Reo_sigmaC: Reovirus 71.9 8.8 0.00019 40.8 6.2 127 319-452 26-152 (326)
476 KOG4571|consensus 71.8 28 0.00062 36.6 9.7 53 284-341 237-289 (294)
477 PF13949 ALIX_LYPXL_bnd: ALIX 71.6 1.2E+02 0.0025 30.5 23.3 82 274-357 26-113 (296)
478 PF12777 MT: Microtubule-bindi 71.3 22 0.00047 37.4 8.9 89 275-365 219-307 (344)
479 PF04576 Zein-binding: Zein-bi 71.0 78 0.0017 28.3 13.2 65 310-398 2-66 (94)
480 PF04102 SlyX: SlyX; InterPro 71.0 24 0.00053 29.1 7.4 51 305-355 2-52 (69)
481 PF02050 FliJ: Flagellar FliJ 70.9 61 0.0013 27.1 16.0 12 350-361 46-57 (123)
482 PF06818 Fez1: Fez1; InterPro 70.7 1.2E+02 0.0027 30.5 21.1 27 372-398 133-159 (202)
483 PRK02793 phi X174 lysis protei 70.6 30 0.00065 29.0 7.9 52 305-356 6-57 (72)
484 cd00632 Prefoldin_beta Prefold 70.5 74 0.0016 27.8 13.9 30 329-358 7-36 (105)
485 KOG1952|consensus 70.3 2.5 5.3E-05 49.6 1.9 47 459-505 183-244 (950)
486 PRK04325 hypothetical protein; 70.2 31 0.00068 29.0 8.0 51 305-355 7-57 (74)
487 cd07653 F-BAR_CIP4-like The F- 70.1 1.2E+02 0.0025 30.0 23.0 202 247-448 5-216 (251)
488 PF09763 Sec3_C: Exocyst compl 70.1 2.1E+02 0.0046 33.0 18.2 136 305-450 3-165 (701)
489 TIGR02977 phageshock_pspA phag 70.0 1.2E+02 0.0026 30.0 19.4 133 302-436 19-151 (219)
490 PRK15178 Vi polysaccharide exp 69.9 1.9E+02 0.004 32.2 17.5 149 273-442 226-385 (434)
491 PF02891 zf-MIZ: MIZ/SP-RING z 69.8 3.2 6.9E-05 32.3 1.9 38 468-505 3-49 (50)
492 PF14915 CCDC144C: CCDC144C pr 69.6 1.6E+02 0.0035 31.4 26.2 191 272-462 26-271 (305)
493 PF14992 TMCO5: TMCO5 family 69.4 1.6E+02 0.0034 31.1 16.4 165 279-450 2-177 (280)
494 PF14257 DUF4349: Domain of un 69.3 24 0.00051 35.4 8.4 97 235-331 93-193 (262)
495 PRK09343 prefoldin subunit bet 69.2 90 0.002 28.4 13.2 108 323-441 2-114 (121)
496 PF08172 CASP_C: CASP C termin 69.2 71 0.0015 32.7 11.8 85 380-464 2-131 (248)
497 PF03915 AIP3: Actin interacti 69.1 1.2E+02 0.0027 33.5 14.3 133 321-454 151-313 (424)
498 PF14992 TMCO5: TMCO5 family 69.1 1.6E+02 0.0034 31.1 16.8 150 297-450 8-168 (280)
499 PF09744 Jnk-SapK_ap_N: JNK_SA 68.9 1.1E+02 0.0025 29.4 15.3 115 307-431 36-150 (158)
500 PF14932 HAUS-augmin3: HAUS au 68.7 93 0.002 31.6 12.5 121 276-403 27-147 (256)
No 1
>KOG0978|consensus
Probab=100.00 E-value=1.3e-44 Score=394.36 Aligned_cols=271 Identities=42% Similarity=0.529 Sum_probs=243.2
Q ss_pred eecchhhhHHH-HHHhHhhhhcCCccccc-----ccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10797 241 SICTSAFQMSF-YKSRWFDFRSLSDSASN-----IYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQ 313 (517)
Q Consensus 241 ~~~~a~~~~~a-l~~~l~~~~~~~d~~~~-----i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr 313 (517)
.+..+.+++.. ++..++++.+.|+.+.+ ...|. .++++++.+.+.++.+.++++++|+.++|+..+++++.|+
T Consensus 364 di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lq 443 (698)
T KOG0978|consen 364 DILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQ 443 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH
Confidence 34556667766 88999999999999888 55555 8999999999999999999999999999999999999998
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 314 KQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 314 ~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
...+..+ +|.+|+++||+||++||+||++++++++++||+|+|||.|++++.|+|+.++++++.++.++.+++.++
T Consensus 444 k~~~~~k----~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~ 519 (698)
T KOG0978|consen 444 KKEKNFK----CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASV 519 (698)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776655 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Q psy10797 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI---------------------I 452 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLee---------------------l 452 (517)
++....|.+|+|+++.++.....+.+++..++++++.+++++.++.+...+|+.+++. +
T Consensus 520 ~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 520 DKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987761 0
Q ss_pred Hhc---chhh-------hhcccc-------------------cccccccccccccc-----cccccchhhHHHHHhhhcc
Q psy10797 453 YTN---GPAR-------LEFGKD-------------------REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR 498 (517)
Q Consensus 453 ~Ek---~~a~-------LEKLKk-------------------~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R 498 (517)
..+ .+.+ ++++++ ..++|++|++|||| |||+||.+||++||++|+|
T Consensus 600 ~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqR 679 (698)
T KOG0978|consen 600 KFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQR 679 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence 011 1111 333322 34689999999999 9999999999999999999
Q ss_pred CCCCCCC--CCCCceEeec
Q psy10797 499 KCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 499 KCP~C~~--~~~Dv~rIyl 515 (517)
|||+||+ |+|||++|||
T Consensus 680 KCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 680 KCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCCCCcccccccCC
Confidence 9999999 9999999997
No 2
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=99.72 E-value=7.3e-17 Score=139.29 Aligned_cols=96 Identities=29% Similarity=0.397 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|.+||+.|++||++.+.++..|+.+++.+|++..||.+|+.||||+||++|+.+|++..+++.|+.++.++++.|.+|+|
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 406 KERFLQTVLTNAEKEL 421 (517)
Q Consensus 406 ~Er~L~~kLs~lEKEL 421 (517)
.|+.+..+|.++|||+
T Consensus 81 ~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHhhccC
Confidence 9999999999999874
No 3
>KOG0320|consensus
Probab=99.05 E-value=5.5e-11 Score=113.34 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=44.3
Q ss_pred cccccccccccccc-------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797 466 REFSAKFVNFRRKS-------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl 515 (517)
.-|+|++|.+...+ |||+||..||++.+.+ .++||+|++ ...++++|||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 44999999986544 9999999999999987 789999998 9999999997
No 4
>KOG0978|consensus
Probab=98.47 E-value=6.9e-05 Score=84.36 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=118.3
Q ss_pred HHHHHHH-HHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797 307 DQTHQLQ-KQVATHKQ---EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL 382 (517)
Q Consensus 307 ~EieeLr-~kL~s~eq---e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL 382 (517)
.+..+++ ..++-... +...+..||..+.++|+.+...+...-+-+.+.++.|++|+.|+-++|++||.+|.+++..
T Consensus 415 ~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~ 494 (698)
T KOG0978|consen 415 EERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKA 494 (698)
T ss_pred HHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444555 23333333 7788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy10797 383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK-------RKAIESAQSAADLKLHLVII 452 (517)
Q Consensus 383 e~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k-------kk~~E~sq~~~dLk~qLeel 452 (517)
....+.|+....+..+.|.+++.....+...+..+|.++..++....... ..++...+.+.++...++.+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887765554332 33344445555666555533
No 5
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.46 E-value=4.5e-05 Score=76.46 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN---FKLMTERIKSNQLHKLAREEKDTLR 383 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n---~KL~aEK~KAdQKyfaamreKdaLe 383 (517)
..+..-+..|++.+.+.++++..++.+..+++++..|-.+.=.++.+..++. ...+ -.+|-.--|.++..+.+.+.
T Consensus 24 ~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak 102 (239)
T COG1579 24 PRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAK 102 (239)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Confidence 3333455567778888888999999999999999998877755555544444 4444 55666667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hh
Q psy10797 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGP----AR 459 (517)
Q Consensus 384 ~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek~~----a~ 459 (517)
.+..+|...+....+.+.++++.-..++.++..+++.+...++.++.. +.+..+...++..+.+++.++.. ..
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e---~~~i~e~~~~~~~~~~~L~~~l~~ell~~ 179 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE---VAEIREEGQELSSKREELKEKLDPELLSE 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888888888888888888887788888888888887777776543 22333333444555555544443 23
Q ss_pred hhccc
Q psy10797 460 LEFGK 464 (517)
Q Consensus 460 LEKLK 464 (517)
+|++.
T Consensus 180 yeri~ 184 (239)
T COG1579 180 YERIR 184 (239)
T ss_pred HHHHH
Confidence 66665
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.42 E-value=0.00014 Score=83.70 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=9.7
Q ss_pred hcCccccccccccchh
Q psy10797 66 LNGQNTAKRSNHLNQT 81 (517)
Q Consensus 66 ~~~~~~~~~~~~~~~~ 81 (517)
+-|.|.+..||-+...
T Consensus 28 i~G~NGsGKS~ildAi 43 (1164)
T TIGR02169 28 ISGPNGSGKSNIGDAI 43 (1164)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566667777665543
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.41 E-value=1.4e-07 Score=91.55 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=43.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh---------------hccCCCCCCC--CCCCceEeec
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET---------------RQRKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t---------------R~RKCP~C~~--~~~Dv~rIyl 515 (517)
.++.|+||.+..++ |||+||+.||.+|+.. +..+||.|+. ..+++.+||-
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 67999999999988 9999999999999853 2358999999 8899999984
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=98.39 E-value=6.5e-05 Score=85.54 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
+.+..++.+++.++.++..++.+.+.+..+|..+...++.++.....+..++....+...++ +.+...+...+
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l-------~~~~~~l~~k~ 323 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EARREELEDRD 323 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH-------HHHHHHHHHHH
Confidence 44555556666666666666666677777777777777776655555555554443333333 33333444444
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQI-------EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 380 daLe~Evk~Lk~Ql-------ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
+.++.++..++..+ +...+.+..+++..+.++..+..+++++......+
T Consensus 324 ~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l 379 (880)
T PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333 33333444444444444444444444443333333
No 9
>KOG0823|consensus
Probab=98.37 E-value=1.9e-07 Score=92.40 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=44.3
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhcc--CCCCCCC--CCCCceEee
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR--KCPKCNA--KANDYHRLY 514 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R--KCP~C~~--~~~Dv~rIy 514 (517)
..|-|.||.+..|+ |||+|||.||..|+..+.- -||.|.. +...|.+||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 66999999999999 9999999999999998643 5699999 888899998
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.00023 Score=81.14 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
..+|..+...++.+......+-..+.+.+..+.+|..+...++.....+-..++.+..+...++..++.....+.++...
T Consensus 264 ~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~ 343 (880)
T PRK02224 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE 343 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444433333333344445555555555554444444443332
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~l 424 (517)
...+...+..+++.+..+
T Consensus 344 ~e~~~~~~~~le~~~~~l 361 (880)
T PRK02224 344 AESLREDADDLEERAEEL 361 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 233444444444444433
No 11
>KOG0317|consensus
Probab=98.35 E-value=1.8e-07 Score=95.01 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=40.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
..+||++|.++..+ |||+||+.||.+|...+. -||.|+. .+++|.-
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcceee
Confidence 45899999999877 999999999999999876 6999999 7777653
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.29 E-value=3.1e-07 Score=66.77 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=28.6
Q ss_pred cccccccccc------cccccchhhHHHHHhhhccCCCCC
Q psy10797 470 AKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKC 503 (517)
Q Consensus 470 C~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C 503 (517)
|+||.+.+.+ |||+||.+||.++++. +.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7899998777 9999999999999988 7899998
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.28 E-value=0.00038 Score=79.83 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=6.3
Q ss_pred hhhHHHHHHhHhhhh
Q psy10797 246 AFQMSFYKSRWFDFR 260 (517)
Q Consensus 246 ~~~~~al~~~l~~~~ 260 (517)
+.++..++..+..+.
T Consensus 676 ~~e~~~l~~~~~~l~ 690 (1179)
T TIGR02168 676 RREIEELEEKIEELE 690 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 14
>PRK11637 AmiB activator; Provisional
Probab=98.22 E-value=0.0012 Score=70.17 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=11.1
Q ss_pred cchhhhHHHHHHhHhhhhc
Q psy10797 243 CTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 243 ~~a~~~~~al~~~l~~~~~ 261 (517)
...+.+++.++..+....+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEK 61 (428)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3456666666666655444
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.21 E-value=0.00071 Score=77.60 Aligned_cols=12 Identities=0% Similarity=-0.081 Sum_probs=4.7
Q ss_pred HHHHHHhHhhhh
Q psy10797 249 MSFYKSRWFDFR 260 (517)
Q Consensus 249 ~~al~~~l~~~~ 260 (517)
+..++..++.+.
T Consensus 672 ~~~l~~e~~~l~ 683 (1179)
T TIGR02168 672 ILERRREIEELE 683 (1179)
T ss_pred hhhHHHHHHHHH
Confidence 334444444333
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.20 E-value=0.001 Score=65.84 Aligned_cols=175 Identities=13% Similarity=0.211 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
.|..|+..+++.+.+-..++ .++.++|..++...++....+..++......-.=|+.++...+++.......-..+.+
T Consensus 40 ~l~rri~~lE~~le~~eerL--~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 40 SLQRRIQLLEEELERAEERL--EEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHHHHHHHCCCHHHHCCC--CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444444 3444555555555555555555555544444455555555555555444444444444
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKR 433 (517)
Q Consensus 354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kk 433 (517)
-.-++..+-.+--++..+...+......|+.+++.+...+........+..+.+..+..++..++.+|.....-.+...+
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~ 197 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER 197 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443333333333333333333333343333333333333334
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 434 KAIESAQSAADLKLHLV 450 (517)
Q Consensus 434 k~~E~sq~~~dLk~qLe 450 (517)
.+..+.+.++.|...|.
T Consensus 198 ~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555555554
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.16 E-value=8.8e-07 Score=67.46 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=35.3
Q ss_pred ccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKAND 509 (517)
Q Consensus 467 e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~D 509 (517)
+..|.+|.+++++ |||+ ||..|+.+++. +.++||.|++..++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 4689999999988 9999 99999999987 67899999985443
No 18
>PRK11637 AmiB activator; Provisional
Probab=98.13 E-value=0.0014 Score=69.80 Aligned_cols=10 Identities=0% Similarity=-0.051 Sum_probs=3.6
Q ss_pred hhhHHHHHHh
Q psy10797 246 AFQMSFYKSR 255 (517)
Q Consensus 246 ~~~~~al~~~ 255 (517)
+.+++.++..
T Consensus 53 ~~qi~~~~~~ 62 (428)
T PRK11637 53 QQDIAAKEKS 62 (428)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 19
>KOG0971|consensus
Probab=98.07 E-value=0.00069 Score=77.76 Aligned_cols=205 Identities=20% Similarity=0.232 Sum_probs=113.1
Q ss_pred hhhhHHHHHHhHhhhhc--CCcccccc--------------------cccHHHHHHHH-------HHHhhhHHHHhhcC-
Q psy10797 245 SAFQMSFYKSRWFDFRS--LSDSASNI--------------------YGSLEFRKFAC-------VVRDSKRDERKKLA- 294 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~--~~d~~~~i--------------------~~e~elr~rlk-------~l~e~~~k~rqkla- 294 (517)
..+||..|+.-|.-++. ..|-.+.+ ..+++|+++|. ++.+...++.+.|+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887776 55554332 23334444433 33333333344442
Q ss_pred ----------cHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q psy10797 295 ----------DEE-AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ--------AFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 295 ----------d~E-al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq--------AyEdmQeQNqrklqqL~EkE 355 (517)
|.| +..|...|.-|++-|+.+++.++-+.+-|.+||+.=|- -|+.+..||.|+-.-+..+.
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 333 44777888888888889999999999999999987553 37889999999988777777
Q ss_pred HHHHHHHHHhhhh-------hhhHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKS-------NQLHK-------LAREEKDTLREQVQALSLQIEAM---HTAIRKLEEKERFLQTVLTNAE 418 (517)
Q Consensus 356 D~n~KL~aEK~KA-------dQKyf-------aamreKdaLe~Evk~Lk~QlekQ---~e~I~kLeE~Er~L~~kLs~lE 418 (517)
|.+..-..+..|+ ++-.. .+.++.|.++..+.-|+.|+++. .+.+.+|.|+.=.|..++--+|
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLe 468 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLE 468 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHH
Confidence 7654332222222 22222 22223333333333333444332 1344444444433444454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797 419 KELHLRNQAMDLNKRKAIESA-QSAADLKLHLV 450 (517)
Q Consensus 419 KEL~~lkqale~~kkk~~E~s-q~~~dLk~qLe 450 (517)
.++..+...-+.++ .+.|.+ +...||..+|+
T Consensus 469 etv~dlEalee~~E-QL~Esn~ele~DLreEld 500 (1243)
T KOG0971|consen 469 ETVGDLEALEEMNE-QLQESNRELELDLREELD 500 (1243)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 55544433333332 233333 23346666655
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.06 E-value=2.6e-06 Score=66.48 Aligned_cols=46 Identities=11% Similarity=-0.105 Sum_probs=40.6
Q ss_pred ccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797 467 EFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL 513 (517)
Q Consensus 467 e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI 513 (517)
++.|++|.+..++ |||+||..||.+++.. ..+||.|+. +..|+.+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC
Confidence 4789999998888 9999999999999987 779999999 77787654
No 21
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.03 E-value=1.1e-06 Score=71.95 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred hcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 461 EFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 461 EKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
++++ +.++|+.|.+..|+ |.|+||+.||.+.+.+ .||.|+. -.+|++
T Consensus 2 ~~le-~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 2 ERLE-ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp HHHH-HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS--
T ss_pred hHHH-HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH
Confidence 3444 56899999999888 9999999999998876 4999999 568875
No 22
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.01 E-value=2.1e-06 Score=63.64 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=29.2
Q ss_pred ccccccccccc--------cccccchhhHHHHHhhhccCCCCCC
Q psy10797 469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCN 504 (517)
Q Consensus 469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~ 504 (517)
.|+||.+.+.+ |||+||.+||.+|++. +++||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 58899987643 9999999999999976 57999995
No 23
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.01 E-value=0.0056 Score=59.91 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHK---QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE 364 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~e---qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE 364 (517)
.|-.++.+|+.++.+.+ +.+.++..|++.+-.-...+.++|.+++.|-+..|..+..|+++
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~ 103 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE 103 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877665 44567788999999999999999999998888888877777654
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.00 E-value=2.7e-06 Score=63.64 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.2
Q ss_pred cccccccccc-----cccccchhhHHHHHhhhcc---CCCCC
Q psy10797 470 AKFVNFRRKS-----YFFVEFLDCLRTRYETRQR---KCPKC 503 (517)
Q Consensus 470 C~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R---KCP~C 503 (517)
|+||.+-+++ |||.||..||+++++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 7899998888 9999999999999988765 49988
No 25
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.00 E-value=4.1e-06 Score=59.47 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.7
Q ss_pred ccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 469 SAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 469 kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.|++|.+...+ |||.||..|++.+++...++||.|+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 47888887644 99999999999999876789999985
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.99 E-value=3.6e-06 Score=57.70 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=29.6
Q ss_pred cccccccccc-----cccccchhhHHHHHhhhccCCCCC
Q psy10797 470 AKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKC 503 (517)
Q Consensus 470 C~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C 503 (517)
|++|.+..++ |||+||..|++.+++....+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788887555 999999999999998677899998
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=3.9e-06 Score=89.20 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=41.8
Q ss_pred hhcccccccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
|+.++ ..+.|+||.+.+++ |||.||..||..++.. +.+||.|+. +..++++
T Consensus 20 l~~Le-~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 20 LYPLD-TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRS 77 (397)
T ss_pred ccccc-cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCcc
Confidence 45555 77999999998888 9999999999999976 569999999 4444543
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=97.91 E-value=0.0032 Score=71.68 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+.+..+.++.+.++.++..++..+.
T Consensus 307 ~~~~~l~~~~~~l~~~~~~l~~~l~ 331 (880)
T PRK03918 307 DELREIEKRLSRLEEEINGIEERIK 331 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555554444443
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.90 E-value=0.0069 Score=67.07 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=135.5
Q ss_pred eecchhhhHHHHHHhHhhhhcCCcccccccccHH---HHHHHHHHH-------hhhHHHHhhc-----------------
Q psy10797 241 SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLE---FRKFACVVR-------DSKRDERKKL----------------- 293 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~e---lr~rlk~l~-------e~~~k~rqkl----------------- 293 (517)
.+..-+.+++.++...+.|.....+++++.+.+. ++..+..++ ....+.+..+
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 4456678888888888888888888888877762 222222222 1122222211
Q ss_pred ----CcHHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 294 ----ADEEAMRKIKQLEDQTHQ------------LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA 357 (517)
Q Consensus 294 ----ad~Eal~rL~~lE~Eiee------------Lr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~ 357 (517)
...+...+|..++.++.+ .+.+++..+...+.|+.-|+.=..|.........+.-..+....+.
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~ 325 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQ 325 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 122344566666655544 3444556677888888888888888888888888888899999999
Q ss_pred HHHHHHHhhhhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 358 NFKLMTERIKSNQLH----------KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 358 n~KL~aEK~KAdQKy----------faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa 427 (517)
+..|..|--.-+|.| ..+.++...++.+...+...++......+.+++....+.+++..++++...+++.
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888884 4566666666666666665555555555556666666666777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 428 MDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 428 le~~kkk~~E~sq~~~dLk~qLe 450 (517)
+...++...++......++..+.
T Consensus 406 l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 406 LQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444444444444444
No 30
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.87 E-value=7.4e-06 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred cccccccccc------cccccchhhHHHHHh-hhccCCCCC
Q psy10797 470 AKFVNFRRKS------YFFVEFLDCLRTRYE-TRQRKCPKC 503 (517)
Q Consensus 470 C~iC~~r~K~------CgHvFC~~CIq~rl~-tR~RKCP~C 503 (517)
|+||.+.+.+ |||.||..|+.++++ ....+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 6788887655 999999999999999 567799998
No 31
>KOG0161|consensus
Probab=97.87 E-value=0.0051 Score=76.18 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
-+.|+.++.+++.++...+...+..+++..++....++|+.+|+
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333344555555555666666655
No 32
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.82 E-value=0.0038 Score=61.80 Aligned_cols=120 Identities=13% Similarity=0.189 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
+||..+|.+++.....|+...+..+..-...+....+++.+...+..--..+...|..+..+..---.++++|.-+.+-.
T Consensus 43 rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl 122 (237)
T PF00261_consen 43 RRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL 122 (237)
T ss_dssp HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555555566677777778888888888888888877777788888888887777778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
..++.++......++.....|..|++.-+.+.+.+..++.
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999998888888888888888888766555554444443
No 33
>KOG2164|consensus
Probab=97.82 E-value=9.3e-06 Score=87.98 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=43.4
Q ss_pred ccccccccccccc-----cccccchhhHHHHHhh----hccCCCCCCC--CCCCceEeecC
Q psy10797 467 EFSAKFVNFRRKS-----YFFVEFLDCLRTRYET----RQRKCPKCNA--KANDYHRLYLG 516 (517)
Q Consensus 467 e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t----R~RKCP~C~~--~~~Dv~rIylt 516 (517)
.+.||||...+-- |||+||.+||=..+.+ ..++||.|+. +..||++|++-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 7899999986533 9999999999988865 3689999999 99999999873
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.80 E-value=0.01 Score=64.11 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQIEAMHTAIRKLEEKER---FLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er---~L~~kLs~lEKEL~~lkqale~ 430 (517)
+..+++.++.+++...+.+..+++..+ .+..++..+++++...+..++.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444444443333322 2233444444444444444433
No 35
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.5e-06 Score=81.97 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred cccccccccccccc-----cccccchhhHHH-HHhhhccCCCCCCC--CCCCc
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRT-RYETRQRKCPKCNA--KANDY 510 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~-rl~tR~RKCP~C~~--~~~Dv 510 (517)
..|||.+|.+.+-+ |||+||+.||-. |...+--+||.|++ ..++|
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 57999999998877 999999999999 77777778999999 66665
No 36
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.72 E-value=1.5e-05 Score=59.49 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=30.1
Q ss_pred ccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.|++|...+.+ |||+||..|++... ....+||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 47888887722 99999999999987 66789999985
No 37
>KOG0161|consensus
Probab=97.71 E-value=0.012 Score=73.04 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL 382 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL 382 (517)
..+++.++++...+..++.+..+...+|+.++.+....++.+.++...-.+.|+++..+..+-.....+...+.+.+.-+
T Consensus 939 ~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 939 QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555555555555555555555555555555555555555554444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 383 REQVQALSLQIEAMHT 398 (517)
Q Consensus 383 e~Evk~Lk~QlekQ~e 398 (517)
+.++..+...+++.+.
T Consensus 1019 e~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.71 E-value=0.011 Score=65.53 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy 372 (517)
......++.++++|+..|...+++.+.|..+.+.+....+.+.+.+..+..+..+...++.+|-.+..-..|+.
T Consensus 163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666777777777666666666666666666666666666666655555455554
No 39
>KOG0963|consensus
Probab=97.70 E-value=0.019 Score=64.26 Aligned_cols=75 Identities=23% Similarity=0.202 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ----LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ 392 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq----L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q 392 (517)
+.....+.+-.=|.+++.|-++.+.+.-.+-.. +..+-+.+.-+|.|-..|+|+.-.|.++.+.|..+....+..
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445566666677788888888877776655555 566667777788999999999999999999988887776644
No 40
>KOG0250|consensus
Probab=97.70 E-value=0.012 Score=69.05 Aligned_cols=84 Identities=26% Similarity=0.308 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN 416 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~ 416 (517)
.++.+.-+...=+.+++.|..+..+..|---.|-....++++.+.+..++-.++.+.......|.++++.-..+..++++
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444455555555544444444555555555554444444444444334444444433334434444
Q ss_pred HHHH
Q psy10797 417 AEKE 420 (517)
Q Consensus 417 lEKE 420 (517)
++++
T Consensus 384 ~~~~ 387 (1074)
T KOG0250|consen 384 LEKQ 387 (1074)
T ss_pred HHHH
Confidence 3333
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.013 Score=69.91 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
....+..+....+.++.++...+...+.....|+++++.-..+..++
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~ 844 (1163)
T COG1196 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555444444444444444333333333
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.69 E-value=0.012 Score=63.75 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
+.+..+....+.++.+++.+...+..
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655555543
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.023 Score=67.77 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 410 LQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 410 L~~kLs~lEKEL~~lkqa 427 (517)
+..++..++.++..++..
T Consensus 833 l~~~~~~~~~~~~~l~~~ 850 (1163)
T COG1196 833 LEEEIEELEEKLDELEEE 850 (1163)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 44
>KOG0250|consensus
Probab=97.64 E-value=0.013 Score=68.81 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 361 L~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~ 431 (517)
+-.+..-+.+-+.++.++.|.++.++..++++. ......+.+.+++-..|..++..++.++..+++..+..
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666677777777777777777766 44444555555555556666666666555555544443
No 45
>KOG0996|consensus
Probab=97.59 E-value=0.0095 Score=70.35 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=103.5
Q ss_pred chhhhHHHHHHhHhhhhcCCccccccccc-HHHHHHHHHHHhhhHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 244 TSAFQMSFYKSRWFDFRSLSDSASNIYGS-LEFRKFACVVRDSKRDERKKL-----ADEEAMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 244 ~a~~~~~al~~~l~~~~~~~d~~~~i~~e-~elr~rlk~l~e~~~k~rqkl-----ad~Eal~rL~~lE~EieeLr~kL~ 317 (517)
.+.+-++.++.+|+......+. +..+ .+++.++.++.+....-+-++ .-.++-..++.++.+|.++++.+.
T Consensus 775 ~s~~~v~~le~~l~~~~~~~~~---~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 775 VSKESVEKLERALSKMSDKARQ---HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666666655443222 1111 134444444444333222211 112222566777777777777766
Q ss_pred hhHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALL--NE-MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ-LHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 318 s~eqe~eALl--sE-IEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ-KyfaamreKdaLe~Evk~Lk~Ql 393 (517)
...-+.+.|. .| |+.+.+-++++|++..+ -+++.+..+.+-.+--|+++..+ +...+....+.++++++.++..+
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i 930 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAI 930 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555543 44 88888888998877777 67788888888888888877643 45556666677777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
..+...|+++......+...+..+++++..+
T Consensus 931 ~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L 961 (1293)
T KOG0996|consen 931 KTSDRNIAKAQKKLSELEREIEDTEKELDDL 961 (1293)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555544444444444444333
No 46
>KOG1029|consensus
Probab=97.57 E-value=0.013 Score=66.92 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.||+.+-+-.|-|...-.+|.++|.|..+++.+|+-||.+-+-+........-.-..+...|++...+-..++++++|
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikd 549 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKD 549 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777888899999999999999998887654433332222222222333444444444444444444
No 47
>PRK09039 hypothetical protein; Validated
Probab=97.55 E-value=0.011 Score=62.01 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
.+|+..+..++.+.+++..+-+.+..+|+...+ +..+.+.....+-.+-.-.++.|..+......|..|+..|
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~-------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL 149 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAG-------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL 149 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444445555555444444444444443221 2223334444444444445556666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 390 SLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 390 k~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
+.|+......|.-.++..+..+.++..++++|
T Consensus 150 r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 150 RRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666666666665554
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.55 E-value=0.061 Score=59.88 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
..++..+++.+.|+.+.+.+....+.+..|.+.+....+++......+
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555444444444333333
No 49
>PHA02926 zinc finger-like protein; Provisional
Probab=97.51 E-value=4.9e-05 Score=75.61 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=33.2
Q ss_pred cccccccccccc------cc--------cccccchhhHHHHHhhh-----ccCCCCCCC
Q psy10797 466 REFSAKFVNFRR------KS--------YFFVEFLDCLRTRYETR-----QRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~------K~--------CgHvFC~~CIq~rl~tR-----~RKCP~C~~ 505 (517)
++..|.+|.+.. .+ |+|.||..||..|-+++ .|.||.|+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~ 227 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRT 227 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcc
Confidence 568999999752 12 99999999999998876 356999998
No 50
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.024 Score=68.48 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 300 RKIKQLEDQTHQLQKQVA---------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~---------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..+..++.++++|..++. .++.+.+++..+++.+....+++++...++-.++.++.+....+-.++.+...
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444333 23455555555666666666666777777777777777767667677777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
....+..++.++..+...++.+.+.|..+++.-.-+...+..++.++
T Consensus 879 ----~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 879 ----NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33366777777777777777777776666665444444444444443
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.48 E-value=0.072 Score=65.47 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
..++......+++++.+.......+.+.++....+..|..++.+....+......+..++..++..+......+.+++.
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666666666666666666666665555556665555555555555554444
No 52
>KOG4673|consensus
Probab=97.48 E-value=0.017 Score=65.24 Aligned_cols=91 Identities=26% Similarity=0.276 Sum_probs=52.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ-QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq-qL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+.++-++-+||-.||.+|-+ +...+++. .|+|+|+.+..||+|.-|-.-++-+----..-|.++.+...+.++
T Consensus 418 vqa~~kERDalr~e~kslk~------ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 418 VQALTKERDALRREQKSLKK------ELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred HHHHHHhHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33444444555555544432 22334444 789999999999999888655444433333334444455555556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 395 AMHTAIRKLEEKERFLQT 412 (517)
Q Consensus 395 kQ~e~I~kLeE~Er~L~~ 412 (517)
|-.+.|.+|.+.+..|..
T Consensus 492 K~ge~i~~L~sE~~~lk~ 509 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKS 509 (961)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 666677776665444443
No 53
>KOG1029|consensus
Probab=97.45 E-value=0.021 Score=65.29 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=55.2
Q ss_pred ccccccHHHHHHHHHHHhhhHHHHhhcC---cHHHHHHH-HHHH---HHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q psy10797 267 SNIYGSLEFRKFACVVRDSKRDERKKLA---DEEAMRKI-KQLE---DQTHQLQKQVATH----KQEEEALLNEMEVTGQ 335 (517)
Q Consensus 267 ~~i~~e~elr~rlk~l~e~~~k~rqkla---d~Eal~rL-~~lE---~EieeLr~kL~s~----eqe~eALlsEIEsIgq 335 (517)
++.+|.++|+.|-+.+++..+++|.+.+ ++|..+|= +..| ..-.+|+++|+.. .+.++-=..||+..+.
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEa 400 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREA 400 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999988888877664 33333111 1111 1123555555532 2444555789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10797 336 AFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 336 AyEdmQeQNqrklqqL~EkE 355 (517)
|-+++..|.+--..+.+-.|
T Consensus 401 ar~ElEkqRqlewErar~qe 420 (1118)
T KOG1029|consen 401 AREELEKQRQLEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998877665544444333
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.42 E-value=8.7e-05 Score=74.38 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=32.8
Q ss_pred ccccccccccccc-------------ccccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRK-------------SYFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K-------------~CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.+..|++|.+... .|+|+||.+||.+|++. +..||.|+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~ 224 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRT 224 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCC
Confidence 4578999998531 29999999999999874 679999998
No 55
>PRK03918 chromosome segregation protein; Provisional
Probab=97.40 E-value=0.093 Score=60.02 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=5.7
Q ss_pred cCCCCCCC
Q psy10797 498 RKCPKCNA 505 (517)
Q Consensus 498 RKCP~C~~ 505 (517)
-.||+|+.
T Consensus 436 ~~Cp~c~~ 443 (880)
T PRK03918 436 GKCPVCGR 443 (880)
T ss_pred CCCCCCCC
Confidence 36777777
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.39 E-value=0.17 Score=54.86 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=87.8
Q ss_pred HHHHHHHhhhHHHHhhcC-----cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 277 KFACVVRDSKRDERKKLA-----DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 277 ~rlk~l~e~~~k~rqkla-----d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
+|++.+....++-.++.. ....+..|+++|.++..++.++.....+.+.+...|+.+.+..+.++.|-..--..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333331 133557778888888888888888888888888888888888877776652222223
Q ss_pred HHHHHHHHH----------HHHHh----hhhhhhHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHH
Q psy10797 352 REKDDANFK----------LMTER----IKSNQLHKLAR----EEKDTLREQVQALSL---QIEAMHTAIR----KLEEK 406 (517)
Q Consensus 352 ~EkED~n~K----------L~aEK----~KAdQKyfaam----reKdaLe~Evk~Lk~---QlekQ~e~I~----kLeE~ 406 (517)
++.=+...+ +.-|- ...-.-|.++. +..+.+.+..+.|.. .++++.+.+. ...+.
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222 11111 12222222222 233333333333322 2222222222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
.+.+...+..-.|-++.++..+...++++.|+......|+..+.
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333344444444555666666666777777777777776655
No 57
>KOG0971|consensus
Probab=97.39 E-value=0.091 Score=61.21 Aligned_cols=181 Identities=19% Similarity=0.225 Sum_probs=102.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 270 YGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348 (517)
Q Consensus 270 ~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrkl 348 (517)
..+++||.+|+.+.|++.--|.+-+ |..-+..+....-+.+.|+.--...-+....|-.||..--++-+++++--.+..
T Consensus 224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k 303 (1243)
T KOG0971|consen 224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYK 303 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999877665542 222222222222233322222223334445577788888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q psy10797 349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ-----------------------------IEAMHTA 399 (517)
Q Consensus 349 qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q-----------------------------lekQ~e~ 399 (517)
..+++.-|.+-=++.||-=|..+...+..|.+++...+..|..- +.+.++.
T Consensus 304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 77777777776666666666666666666555555444444322 2222222
Q ss_pred HHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 400 IRKLEEKE---RF----LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 400 I~kLeE~E---r~----L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
+-+|.|.. +. +...++...-|+..++...+..++++.++....++|+.|++
T Consensus 384 lVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 384 LVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333321 11 22222223334555555555556666677777788888887
No 58
>KOG0976|consensus
Probab=97.38 E-value=0.047 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=23.0
Q ss_pred ccccchhhHHHHHhhhccCCCCCCC
Q psy10797 481 FFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 481 gHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
-|--|..|+...|.+.+-|=|+||.
T Consensus 632 e~~elvtyL~sqi~~kqtkqpklgr 656 (1265)
T KOG0976|consen 632 EHPELVTYLPSQIDAKQTKQPKLGR 656 (1265)
T ss_pred ccHHHHhhchhhhchhcccCCccCC
Confidence 4778999999999999999999998
No 59
>KOG0996|consensus
Probab=97.37 E-value=0.05 Score=64.56 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=33.5
Q ss_pred ccCCCCCCCCCCCCccccccchhhhhhhhhhh---------------cCccccccccccchhHHHHHHHHHHH
Q psy10797 35 IPMSPHHKMMPGTGRDMKMIESDQVRDLKSQL---------------NGQNTAKRSNHLNQTFCVASLLIAQL 92 (517)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (517)
+|-.|-|--++..|-- -||..=-|+..||-. -|.|....||-..--.-|...=..++
T Consensus 68 ~pp~~~~~t~~~~~~R-L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~ki 139 (1293)
T KOG0996|consen 68 PPPRPPHMTSEAGGPR-LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKI 139 (1293)
T ss_pred CCCCChhhcCCCCCCe-eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHH
Confidence 4444444444443332 378888899999853 46777788887665544444433333
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.36 E-value=0.066 Score=65.76 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=92.1
Q ss_pred cccCcceeee--ecchhhhHHHHHHhHhhhhcCC----------------cccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797 232 FSLTSTLFVS--ICTSAFQMSFYKSRWFDFRSLS----------------DSASNIYGSLEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 232 ~~l~~~~~~~--~~~a~~~~~al~~~l~~~~~~~----------------d~~~~i~~e~elr~rlk~l~e~~~k~rqkl 293 (517)
+.||-.--|. +++-+..+..+..-|...+... -++++|...++.|.-++++- .++.+.
T Consensus 220 yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAa----g~r~rk 295 (1486)
T PRK04863 220 YLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEAL----ELRREL 295 (1486)
T ss_pred HcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHH----HHHHHH
Confidence 3455442244 5556666666666555555422 23456777777777777762 222222
Q ss_pred CcHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 294 ADEEAM-------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERI 366 (517)
Q Consensus 294 ad~Eal-------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~ 366 (517)
.++. .++..++..+++|..+++.++++.+.+..-.+...++. ..+........++.+.++.......+..
T Consensus 296 --~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~eeeLe 372 (1486)
T PRK04863 296 --YTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQNEVVE 372 (1486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 44444444444555555554444444433322222211 2233334444455555555555555555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 367 KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAE 418 (517)
Q Consensus 367 KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lE 418 (517)
.+.........+.+.++.+++.++.++......+..++.....++..+..++
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666777777766666555555555555544544444333
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.12 Score=62.56 Aligned_cols=95 Identities=5% Similarity=-0.018 Sum_probs=45.2
Q ss_pred eeeecchhhhHHHHHHhHhhhhcCCc----ccccccccHHHHHHHHHHHhhhHHHHhhc-------CcHHHHHHHHHHHH
Q psy10797 239 FVSICTSAFQMSFYKSRWFDFRSLSD----SASNIYGSLEFRKFACVVRDSKRDERKKL-------ADEEAMRKIKQLED 307 (517)
Q Consensus 239 ~~~~~~a~~~~~al~~~l~~~~~~~d----~~~~i~~e~elr~rlk~l~e~~~k~rqkl-------ad~Eal~rL~~lE~ 307 (517)
.-++.+++++++.++..|+.....-+ ..+++..-..+..++..++.....-...+ .-+++...++.++.
T Consensus 757 e~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~ 836 (1311)
T TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH 836 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence 34555666666666666655554111 11222222233333333333322221111 12445566666666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
+++.|+..++.+..+.+.+..+|..+
T Consensus 837 el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 837 ELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555555555555
No 62
>KOG0933|consensus
Probab=97.28 E-value=0.047 Score=64.00 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797 300 RKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy 372 (517)
+|++.++.++..+.++++ ..+++.+.|..|.|.+.++.+....|...+..++......+-.|.+. .
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k-------v 859 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK-------V 859 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 788888888877777666 45567777777777777777777777666666666666555555433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~k 402 (517)
..+..+.+.+..++.-.++....+...|..
T Consensus 860 ~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 860 DKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 333444444444544444444444444443
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.28 E-value=0.082 Score=58.77 Aligned_cols=209 Identities=18% Similarity=0.227 Sum_probs=119.1
Q ss_pred ecchhhhHHHHHHhHhhhhcCCcccccccccH----------------------------HHHHHHHHHHhhhHHHHhh-
Q psy10797 242 ICTSAFQMSFYKSRWFDFRSLSDSASNIYGSL----------------------------EFRKFACVVRDSKRDERKK- 292 (517)
Q Consensus 242 ~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~----------------------------elr~rlk~l~e~~~k~rqk- 292 (517)
+..-+.+++.++...+.|....++++++.+.+ .+-.++.++++..++-...
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g 242 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG 242 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence 34556777777777777777666666666665 2222333333333322111
Q ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 293 --LADEEAMRKIKQLEDQTHQLQKQVA------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 293 --lad~Eal~rL~~lE~EieeLr~kL~------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
+...++..+|+.++.++.++...++ ....+.+.|+.-|+.=..|.....+........+....+.+
T Consensus 243 y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~ 322 (560)
T PF06160_consen 243 YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQN 322 (560)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1233455677777777766555554 34455555555555556677777777888888888899999
Q ss_pred HHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 359 FKLMTERIKSNQLHKLAREEK---DTLREQVQALSLQIEAMHTAIR-------KLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 359 ~KL~aEK~KAdQKyfaamreK---daLe~Evk~Lk~QlekQ~e~I~-------kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
..|..|--+-+|.|-..-.+. ..++.+++.+..+.+...+.|. .+.+.-+.+...+..++++...+...+
T Consensus 323 ~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l 402 (560)
T PF06160_consen 323 KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL 402 (560)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888885544333 2333444444443333322222 233333444455556666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 429 DLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 429 e~~kkk~~E~sq~~~dLk~qLe 450 (517)
...++.-.++..+...++..+.
T Consensus 403 ~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 403 QSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444455555555444
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.28 E-value=0.054 Score=55.94 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~ 401 (517)
+...+|..+++-+.+.+..+..+...++.++..++.++......+.
T Consensus 182 ~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 182 EARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344555555555556655555555555555555555444443333
No 65
>PRK09039 hypothetical protein; Validated
Probab=97.27 E-value=0.065 Score=56.32 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~ 352 (517)
|+.++.+|.+|=..+.--......+-.+|..+..-|+.++.+..++-.++.
T Consensus 55 L~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 55 LDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444455555666666666666655555554444333
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.26 E-value=0.16 Score=51.36 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHH-
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ-LHKL- 374 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ-Kyfa- 374 (517)
+.+-+|+.+..++.+|....+....+.++..+|++.+-+++.+.+.-...+=.|++..+..+.++- +|.+-.+ +..+
T Consensus 7 ~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r-~r~~~~e~kl~~v 85 (239)
T COG1579 7 KSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR-ERIKRAEEKLSAV 85 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 344667777778888888888888888888888888888888877776666666666666665553 3332222 2211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 -AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 375 -amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
-+++..+|..|+.+++.+.......+..+.+....++
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334445555555555544444444444444433333
No 67
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.21 E-value=0.32 Score=52.45 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS 368 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA 368 (517)
.|.|-+..+.++.+..+|-++.-.|....-+-|-+.+....++-.|..+...++..|..++.+.
T Consensus 100 ~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql 163 (499)
T COG4372 100 AETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444444444444444445555555555555555555555555555555555555444
No 68
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.18 E-value=0.00017 Score=54.66 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred cccccccccc---------cccccchhhHHHHHhhh---ccCCC
Q psy10797 470 AKFVNFRRKS---------YFFVEFLDCLRTRYETR---QRKCP 501 (517)
Q Consensus 470 C~iC~~r~K~---------CgHvFC~~CIq~rl~tR---~RKCP 501 (517)
|+||.+ +.+ |||+||.+|+++...+. .-|||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 788888 433 99999999999998853 44888
No 69
>KOG0612|consensus
Probab=97.18 E-value=0.12 Score=61.80 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
+.+.++..+--+..+.+...-+....++.++..|+..+++-+..+.++++..+...+..++.|+
T Consensus 602 ~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 602 KENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555556666677788888888888888888888888888866667766666666
No 70
>KOG0977|consensus
Probab=97.17 E-value=0.099 Score=58.28 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
.+.+.+...+..++..-+.+..+|.++-.+|...-...-+-+.-|+...++-..++++.+
T Consensus 155 Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 155 AEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333344444444444444444444444433333333333333333333333333333
No 71
>PRK01156 chromosome segregation protein; Provisional
Probab=97.16 E-value=0.18 Score=58.38 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
....+..++.++..|+..+...+.+.+.+..+++.+.+.++.+
T Consensus 202 ~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l 244 (895)
T PRK01156 202 IKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL 244 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555444443
No 72
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.15 E-value=0.17 Score=55.99 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
+..+..|--.+......+..+...+...+..|+..+++.+.-+.++++.+......+.+++-+|...+..++.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 4445555556666666777777778888888888888888888888888888777888888887777666654
No 73
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.15 E-value=0.078 Score=60.67 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797 338 EDMQEQNSRLLQQLREKDDANFKLMTER 365 (517)
Q Consensus 338 EdmQeQNqrklqqL~EkED~n~KL~aEK 365 (517)
.+|.....++-.++..+||.+..|-.|.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555554444
No 74
>KOG4674|consensus
Probab=97.14 E-value=0.18 Score=62.66 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhhHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 275 FRKFACVVRDSKRDERKKLADEE--AMRKIKQLEDQTHQLQKQVATH-------KQEEEALLNEMEVTGQAFEDMQEQNS 345 (517)
Q Consensus 275 lr~rlk~l~e~~~k~rqklad~E--al~rL~~lE~EieeLr~kL~s~-------eqe~eALlsEIEsIgqAyEdmQeQNq 345 (517)
++.+|+.++..+..++.....-+ ....+.++..++..++.++... +...+.|...|+..-+--+.+.++|+
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999988887766654222 3377778888888888887754 46778888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 346 rklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
.+-..+...+..+..+..|-..++-+...+--+.+.|..|...++..-+....
T Consensus 714 ~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~ 766 (1822)
T KOG4674|consen 714 NLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQ 766 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888887777777777666544333333
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.13 E-value=0.17 Score=57.22 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=76.6
Q ss_pred eeeeecchhhhHHHHHHhHhhhhc-----CCcccccccccHH---------HHHHHHHHHhhhHHHHhhcCcHHHH----
Q psy10797 238 LFVSICTSAFQMSFYKSRWFDFRS-----LSDSASNIYGSLE---------FRKFACVVRDSKRDERKKLADEEAM---- 299 (517)
Q Consensus 238 ~~~~~~~a~~~~~al~~~l~~~~~-----~~d~~~~i~~e~e---------lr~rlk~l~e~~~k~rqklad~Eal---- 299 (517)
|.=++.....+|..|+.+|..+.. .++......++.+ |++++..+.+.+.. ...+-+.+
T Consensus 41 L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa---qv~~ne~Ls~L~ 117 (617)
T PF15070_consen 41 LKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA---QVENNEQLSRLN 117 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333455667888999999988875 2222233344432 33334344333222 11122222
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797 300 ----RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLA 375 (517)
Q Consensus 300 ----~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaa 375 (517)
.+|..+|..+++++... .+...|+..|++=..+...+-+||..+-.||.|.++.--+|..|++--..+..+.
T Consensus 118 ~EqEerL~ELE~~le~~~e~~----~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQ----EDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE 193 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 44444444444444433 3344566666666666667789999999999999999999988875443333333
Q ss_pred H
Q psy10797 376 R 376 (517)
Q Consensus 376 m 376 (517)
.
T Consensus 194 q 194 (617)
T PF15070_consen 194 Q 194 (617)
T ss_pred H
Confidence 3
No 76
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.13 E-value=0.1 Score=56.20 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhHHHHhh
Q psy10797 274 EFRKFACVVRDSKRDERKK 292 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqk 292 (517)
++++++.++++++.+++++
T Consensus 172 ~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 172 TYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555444
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.12 E-value=0.1 Score=51.30 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
+.++...|..++.+|+..+.+.......+++.-+.|...-.++..++-....-+......+.+.++..++|+.-++
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445555555555555555555555555555555555444555555533333332223344455555555555554
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.11 E-value=0.12 Score=48.11 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLA 375 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaa 375 (517)
+.+..+...+++++.+|...+..++.+..+|..=+..++.-.+.++++....-..+.+.+......
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~-------------- 75 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA-------------- 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH--------------
Confidence 445566666777777777666666666666666666666666666555555444444444322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQS 441 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~ 441 (517)
+.+...++.|...++.....+....++-+....+.+.++++...+.+..+...+++.++..+
T Consensus 76 ----E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 76 ----EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred ----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 14444444554445444444444444444444444555555555544444444444444433
No 79
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.10 E-value=0.00018 Score=74.04 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=35.9
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..++|.||..+++- |||.||.-||.+.+.+ |-.||.|+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~ 67 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCRE 67 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccc
Confidence 66899999999887 9999999999999987 789999997
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.21 Score=57.32 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~ 431 (517)
+++.-+..|+.|++.|+..+....+.+..+|+.-..|+....+-+++...+-.++.+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am 599 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM 599 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555667777888888887777777777777655444432112233344444444433
No 81
>KOG0933|consensus
Probab=97.09 E-value=0.15 Score=60.12 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k 402 (517)
..-+..+++.+..-+++++.+...+..-+...++.+..+ |+...|-+...- +.+..++++++.++..++++.....+
T Consensus 736 ~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~l--E~~~~d~~~~re-~rlkdl~keik~~k~~~e~~~~~~ek 812 (1174)
T KOG0933|consen 736 FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTL--EKKMKDAKANRE-RRLKDLEKEIKTAKQRAEESSKELEK 812 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544 443333333332 23444555666666666555554444
No 82
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.07 E-value=0.16 Score=60.85 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=37.3
Q ss_pred hhhhHHHHHHhHhhhhcCCcc----cccccccHHHHHHHHHHHhhhHHHHhh-------cCcHHHHHHHHHHHHHHHHHH
Q psy10797 245 SAFQMSFYKSRWFDFRSLSDS----ASNIYGSLEFRKFACVVRDSKRDERKK-------LADEEAMRKIKQLEDQTHQLQ 313 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~~~d~----~~~i~~e~elr~rlk~l~e~~~k~rqk-------lad~Eal~rL~~lE~EieeLr 313 (517)
-++.+..|++.|+-+++..+. ..+-..-++.-++++++++.....++. ++.+|..+++...+.++.+++
T Consensus 43 ~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 43 QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKS 122 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777663332 122222223334444444444433221 234555566666666666666
Q ss_pred HHHHh
Q psy10797 314 KQVAT 318 (517)
Q Consensus 314 ~kL~s 318 (517)
..+..
T Consensus 123 ~~l~~ 127 (1109)
T PRK10929 123 RQAQQ 127 (1109)
T ss_pred HHHHH
Confidence 66553
No 83
>KOG0999|consensus
Probab=97.06 E-value=0.18 Score=56.33 Aligned_cols=137 Identities=24% Similarity=0.322 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhhHHHHhhc--------CcHHHH------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKL--------ADEEAM------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkl--------ad~Eal------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.+|.++..+++++.+++... .++|++ ++|..+|.++..+|..|...+.+.+.+.++-..+
T Consensus 61 ~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 61 LARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777775421 244433 8888999999999999999888888887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH
Q psy10797 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ-I--EAMHTAIRKLEEKERFL 410 (517)
Q Consensus 334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q-l--ekQ~e~I~kLeE~Er~L 410 (517)
+..=.....|..|+-.++.|.-.+-.+|.+ -|.-+.++.=+|.++|.+|+.. + +-..-.|.+|+|.-..+
T Consensus 141 ~e~~~~~E~qR~rlr~elKe~KfRE~Rlls-------eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 141 KESNAAVEDQRRRLRDELKEYKFREARLLS-------EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555555677777777777777777763 4777788888888888888643 3 44556788888876666
Q ss_pred HHHHHHH
Q psy10797 411 QTVLTNA 417 (517)
Q Consensus 411 ~~kLs~l 417 (517)
..++.++
T Consensus 214 n~q~ee~ 220 (772)
T KOG0999|consen 214 NSQLEEA 220 (772)
T ss_pred HHHHHHH
Confidence 6666554
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.01 E-value=0.16 Score=57.48 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~ 317 (517)
..++..||..+.+|+.+++
T Consensus 49 ~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3555555555555555444
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.01 E-value=0.2 Score=60.41 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=7.1
Q ss_pred ccHHHHHHHHHHHhhh
Q psy10797 271 GSLEFRKFACVVRDSK 286 (517)
Q Consensus 271 ~e~elr~rlk~l~e~~ 286 (517)
.+++|+.++..++...
T Consensus 601 ~ee~L~~~l~~~~~~l 616 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQL 616 (1201)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3444444444444443
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.99 E-value=0.15 Score=61.44 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=12.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
.++.++..++.+...+..|++.+.++.
T Consensus 682 ~~~~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 682 QIEEQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444
No 87
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.99 E-value=0.00043 Score=56.99 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=37.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.+|.|+|+..-.+| |||+|+..||+.|++.+...||.|+. +..|+.+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence 36899999999998 99999999999999988999999988 6666654
No 88
>KOG0994|consensus
Probab=96.99 E-value=0.38 Score=57.56 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy10797 350 QLREKDDANFKL 361 (517)
Q Consensus 350 qL~EkED~n~KL 361 (517)
++.++|..+.+|
T Consensus 1620 ~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1620 QLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.97 E-value=0.51 Score=52.56 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=48.6
Q ss_pred HHHHHHhHhhhhc--CCcccccccccHHHHHHHHHHHhhhHHHHhhcC--cH-HHHHHHHHHHHHHHHHHHHHHhhH---
Q psy10797 249 MSFYKSRWFDFRS--LSDSASNIYGSLEFRKFACVVRDSKRDERKKLA--DE-EAMRKIKQLEDQTHQLQKQVATHK--- 320 (517)
Q Consensus 249 ~~al~~~l~~~~~--~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla--d~-Eal~rL~~lE~EieeLr~kL~s~e--- 320 (517)
+++|+..-..+++ .+.+.++=.+...++++|..++....++..-+. |. +|..-+..++.++..|+..++..-
T Consensus 142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~ 221 (569)
T PRK04778 142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELL 221 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 333333333444777777777777777655542 32 245556666666666666665332
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEA-LLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 321 qe~eA-LlsEIEsIgqAyEdmQe 342 (517)
.+... +=..++.+...|++|.+
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 12211 22344555566665554
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.97 E-value=0.18 Score=57.88 Aligned_cols=115 Identities=25% Similarity=0.370 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 377 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr 377 (517)
...+|..++.++..+|..+.....+.+-|......+.++.+.+..+..++-.++.|.-.+-.+|+ |-|.-+.+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll-------~dyselEe 104 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLL-------QDYSELEE 104 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH
Confidence 34899999999999999999999999999999999999999999999999999998888888886 56888888
Q ss_pred HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 378 EKDTLREQVQALSLQ-I--EAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 378 eKdaLe~Evk~Lk~Q-l--ekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
|.=+|.++|..|+.. + +-.+-.|.+|+|.-..|.+++.++.+
T Consensus 105 ENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 105 ENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888743 3 56666788888887778877776544
No 91
>KOG0982|consensus
Probab=96.96 E-value=0.16 Score=55.17 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=135.1
Q ss_pred cccccccceeccccceeeccc-Ccceeeee-----cchhhhHHHHHHhHhhhhcCCcccccccccH-----HHHHHHHHH
Q psy10797 214 SIFRFSSSTIFVYHCFDIFSL-TSTLFVSI-----CTSAFQMSFYKSRWFDFRSLSDSASNIYGSL-----EFRKFACVV 282 (517)
Q Consensus 214 ~~~~~~~~~~~~~~c~~i~~l-~~~~~~~~-----~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~-----elr~rlk~l 282 (517)
++.+++.+-+|-.+.++---+ +-.++|+. -+-..|+.+|+.....+..-.+++-|-.+.. .|..|+-.+
T Consensus 183 ptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~L 262 (502)
T KOG0982|consen 183 PTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHML 262 (502)
T ss_pred hhhhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHH
Confidence 445555444444444332211 12233333 3456899999998888877555555555443 677777777
Q ss_pred HhhhHHHHhhcCcHHHH------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 283 RDSKRDERKKLADEEAM------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 283 ~e~~~k~rqklad~Eal------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
+|..++. .+.++|.+ .+-+.+.-+++.|+.++..++.++..|-+++..+-.-.+++.+--+|..++
T Consensus 263 EEq~req--ElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~ 340 (502)
T KOG0982|consen 263 EEQRREQ--ELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDL 340 (502)
T ss_pred HHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 7665542 22222221 122233445578888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy10797 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF-LQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~-L~~kLs~lEKEL~~lkqal 428 (517)
|-..-+...-.+-++....++.....++|.+.+.=+-.|..+++.....+.-++-.-+. -..++..++.+++.++|..
T Consensus 341 LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~n 419 (502)
T KOG0982|consen 341 LEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcccc
Confidence 88888888888888888888888888888887776666666655544433332210000 1124445555555554443
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.95 E-value=0.7 Score=49.97 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ---EQNSRLLQQL 351 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ---eQNqrklqqL 351 (517)
+++.++.+.++-.+|+..|+.+-++..-|..+.+++...-+.+| +|...-+.+|
T Consensus 135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777666666666666666665555555 4444434333
No 93
>KOG0980|consensus
Probab=96.93 E-value=0.45 Score=55.57 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
+.|++..-.||+.--+....|+.++....-....=-.+..| ....+...++.++.++.+|+.++++.+..-.+++-+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k---Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K 488 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK---QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK 488 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777776666654444444444443322221111112211 122344456666667677766666555444443333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~l 424 (517)
-+.....++.++.|+..+
T Consensus 489 ~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 489 TESQAKALESLRQELALL 506 (980)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 94
>KOG4360|consensus
Probab=96.92 E-value=0.049 Score=60.04 Aligned_cols=125 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797 300 RKIKQLEDQTHQLQKQVATH-----------KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS 368 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~-----------eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA 368 (517)
.+|..+++|+..||.+..-+ .+-+..+.+|+..+-.+...+++..++|..++.-.-+.|.||+++-+-+
T Consensus 166 ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 166 EKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788888888888876532 2334566789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
+.|...+.-+|+.+..-++..+..-+........++|+....-..+...|.+|+-+
T Consensus 246 qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 246 QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998888888775444433333333344445555555555666666666544
No 95
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.78 Score=53.70 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=6.1
Q ss_pred ccCCCCCCC
Q psy10797 497 QRKCPKCNA 505 (517)
Q Consensus 497 ~RKCP~C~~ 505 (517)
..+||.||.
T Consensus 457 ~~~CPvCg~ 465 (908)
T COG0419 457 GEKCPVCGQ 465 (908)
T ss_pred CCCCCCCCC
Confidence 457777775
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.89 E-value=0.3 Score=54.41 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhcC---cHHHHHHHHHHHHHHH---------------------HHHHHHHhhHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLA---DEEAMRKIKQLEDQTH---------------------QLQKQVATHKQEEEALLN 328 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqkla---d~Eal~rL~~lE~Eie---------------------eLr~kL~s~eqe~eALls 328 (517)
.++..++..+++........+. -+++...+..+..+|+ .+...+...++.+..|..
T Consensus 248 ~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 248 LDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777766655542 3334444544444443 333334467789999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 329 EMEVTGQAFED---MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 329 EIEsIgqAyEd---mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|++.+.+.|.= --+....+-.++...+.....+...-....+.|..+....+.+..++..+..+...-.+.+..|.+
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999942 112234444567777777777766666667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 406 KERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 406 ~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
.|+.-+.+|..+...+...+..++.
T Consensus 408 dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 408 DEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888777666654
No 97
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.61 Score=54.55 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=6.5
Q ss_pred cccccccc
Q psy10797 468 FSAKFVNF 475 (517)
Q Consensus 468 ~kC~iC~~ 475 (517)
=+||+|+.
T Consensus 458 ~~CPvCg~ 465 (908)
T COG0419 458 EKCPVCGQ 465 (908)
T ss_pred CCCCCCCC
Confidence 47999993
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.87 E-value=0.96 Score=49.27 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL 449 (517)
+...+..++.|-..+......|.+...++.-.-..-++.+..++.++...++.++.++.+..++.+....+..+.
T Consensus 173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444555555555544444444443333222122222234444444444444444444444444444444333
No 99
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.84 E-value=0.35 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 408 RFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 408 r~L~~kLs~lEKEL~~lkqale~ 430 (517)
+.+-.++..+++++...+++++.
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544443
No 100
>KOG0980|consensus
Probab=96.81 E-value=0.54 Score=54.94 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
+.-.++-+++.++|..|-.++.+.++. .-.+.-|+....+..+.++.|+..+..+++.++..+..+.+
T Consensus 455 e~~~~s~~~~~~~~~~L~d~le~~~~~-------~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 455 ESAEQSIDDVEEENTNLNDQLEELQRA-------AGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333444444444444444444433332 22333344444444444444444444444444443333333
No 101
>PRK11281 hypothetical protein; Provisional
Probab=96.81 E-value=0.27 Score=59.13 Aligned_cols=96 Identities=8% Similarity=-0.029 Sum_probs=55.3
Q ss_pred hHHHHHHhHhhhhcCCcc----cccccccHHHHHHHHHHHhhhHHHHhhcCcH----HHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 248 QMSFYKSRWFDFRSLSDS----ASNIYGSLEFRKFACVVRDSKRDERKKLADE----EAMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 248 ~~~al~~~l~~~~~~~d~----~~~i~~e~elr~rlk~l~e~~~k~rqklad~----Eal~rL~~lE~EieeLr~kL~s~ 319 (517)
-+..|++.|+-+++..+. ...-..-+++.++++++.+...+.++...++ ....-+.++|..+.+++..+...
T Consensus 61 ~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~ 140 (1113)
T PRK11281 61 VQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNA 140 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 478888888888873333 2233334477777888877777655532211 01122244666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 320 KQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 320 eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
+++...+++.+-+.....|..|++
T Consensus 141 Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 141 QNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHH
Confidence 666666666666555555555544
No 102
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.81 E-value=0.32 Score=44.36 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
.++..++.++..++...+..+.....+..+++...+.+.+++..-.+-|..-++-=. ....++.+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~--------------~L~~lr~e~ 68 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK--------------ELQQLREEL 68 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHH
Confidence 467788889999999999999999999999999999999988776665554333222 222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~ 401 (517)
..+..++..|+..++.....+.
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444433
No 103
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.80 E-value=0.59 Score=45.82 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
-+|..+..++.+|+.+++.+..|+..|-.==-.-.+|.......+..+=+-+..+.+.+--|-..--++...+.++-+..
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655555555543333333333333333333333333444444444333333344444444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIE 394 (517)
Q Consensus 380 daLe~Evk~Lk~Qle 394 (517)
-..+.++..++.++.
T Consensus 92 k~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 92 KDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.80 E-value=0.72 Score=46.73 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 413 VLTNAEKELHLRNQAM 428 (517)
Q Consensus 413 kLs~lEKEL~~lkqal 428 (517)
.+..++.++..++..+
T Consensus 263 ~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 263 EIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHH
Confidence 3334444444443333
No 105
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.79 E-value=0.26 Score=56.11 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcC--cHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLA--DEE----AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkla--d~E----al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIE 331 (517)
++++++.+++.+...++++.. +++ ..++|..++.++...+.+....+...+.+...+.
T Consensus 205 ~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 205 DLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888888752 222 2277888888888888777777777776666554
No 106
>KOG0964|consensus
Probab=96.78 E-value=0.27 Score=57.90 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhHHHHhhc-CcHHHHHHHHHHHHHHHHHHH--HHH---------hhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKL-ADEEAMRKIKQLEDQTHQLQK--QVA---------THKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkl-ad~Eal~rL~~lE~EieeLr~--kL~---------s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
..+.-++-++|-..+..+.- .=.....||..+|+|.++|+. +++ --.++..-.++||+.++.++...-
T Consensus 171 rreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~ 250 (1200)
T KOG0964|consen 171 RREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAP 250 (1200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 34444555555555433321 112344788888888887764 222 234777778889999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS-------LQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 342 eQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk-------~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
+.+.+...++...+|...++-.|.-+-..+...+..+|+.+.++-...- -++...++.|..-++........+
T Consensus 251 e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l 330 (1200)
T KOG0964|consen 251 EESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL 330 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence 8888888888888888888887777777778787777777776632222 222233333333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 415 TNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449 (517)
Q Consensus 415 s~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL 449 (517)
..++.++...++.++..+.+..++..+.+.++.+|
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl 365 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRL 365 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 44444444444444444333333333333344433
No 107
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.76 E-value=0.00073 Score=55.93 Aligned_cols=24 Identities=17% Similarity=0.546 Sum_probs=21.1
Q ss_pred cccccchhhHHHHHhhhccCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCN 504 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~ 504 (517)
|||.|-..||.+|+++ ++.||.|+
T Consensus 50 C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 50 CGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp TSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 9999999999999975 56999996
No 108
>KOG4674|consensus
Probab=96.73 E-value=0.53 Score=58.72 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK- 406 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~- 406 (517)
+||+.+..--+++..|+...-..+.+.+.+....+++-+-..=++..+-.+|+.+..++.-|...+.+-++....+.-.
T Consensus 136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~ 215 (1822)
T KOG4674|consen 136 AELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREH 215 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 3555555555666666666667777777777777777777777788888888888888888888877766665554443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ---ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449 (517)
Q Consensus 407 ---Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL 449 (517)
.-.+..+|.++..++..++..+..++++..+++....++...+
T Consensus 216 s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~l 261 (1822)
T KOG4674|consen 216 SIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLEL 261 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777666666666666666666554444433
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.70 E-value=0.84 Score=46.25 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=8.4
Q ss_pred hhhHHHHHHhHhhhhc
Q psy10797 246 AFQMSFYKSRWFDFRS 261 (517)
Q Consensus 246 ~~~~~al~~~l~~~~~ 261 (517)
+++-..|+..|..+.+
T Consensus 24 E~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 24 EQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHH---
T ss_pred HHHhhhhHHHHHHHHh
Confidence 4555567777777776
No 110
>PRK11281 hypothetical protein; Provisional
Probab=96.70 E-value=0.31 Score=58.58 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 379 KDTLREQVQALSLQI 393 (517)
Q Consensus 379 KdaLe~Evk~Lk~Ql 393 (517)
+..++.|...++.++
T Consensus 194 ~~~l~ae~~~l~~~~ 208 (1113)
T PRK11281 194 RVLLQAEQALLNAQN 208 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444544444444
No 111
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.66 E-value=1 Score=46.60 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k 402 (517)
+.+.+..+..+....+.++..++.+++.....+..
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666665555444443
No 112
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.66 E-value=0.9 Score=50.34 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=72.4
Q ss_pred eecchhhhHHHHHHhHhhhhcC-CcccccccccHHHHHHHHHHHhhhHHHH--hhcCcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 241 SICTSAFQMSFYKSRWFDFRSL-SDSASNIYGSLEFRKFACVVRDSKRDER--KKLADEEAMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~~-~d~~~~i~~e~elr~rlk~l~e~~~k~r--qklad~Eal~rL~~lE~EieeLr~kL~ 317 (517)
++..++..+..|+..+...+.. .+......-...|+.+++...+..-... .+-...+....+.....++++.+..|.
T Consensus 219 ~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~ 298 (522)
T PF05701_consen 219 ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELE 298 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777544441 1111112233355666666555222211 111123333557777777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa 374 (517)
..+.+...|...++++..-.+....-..++-+.....+..+..|-.|..+..+...+
T Consensus 299 ~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 299 KAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 666666666666666666555555555555555555555555555555555555443
No 113
>KOG4673|consensus
Probab=96.65 E-value=0.81 Score=52.46 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD---DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE---D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
+.+-..+|++|=|.+++--=.-..+..++-.+..+-| +++-+++.+---..|+.....+.|+..+.. ++..+++
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~---~~E~I~k 527 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKL---LQETIEK 527 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHH
Confidence 3444555666666555533222233333334444433 222233333333445555566666666653 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
.+..+.+.++.-..++...+.+|.++
T Consensus 528 ~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 528 HQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444444443333444444444433
No 114
>KOG0976|consensus
Probab=96.63 E-value=0.5 Score=54.84 Aligned_cols=86 Identities=8% Similarity=0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhHHHHhhcC--cHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 275 FRKFACVVRDSKRDERKKLA--DEEAMR---KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 275 lr~rlk~l~e~~~k~rqkla--d~Eal~---rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq 349 (517)
.+.+|++++..+.+..+.++ +.|... .|...-.++-+++.++..+-++...++.-++...+-|++..-.|-++++
T Consensus 139 ~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sl 218 (1265)
T KOG0976|consen 139 NEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSL 218 (1265)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 34456666666665555553 344443 3333345566777777777777777777788888888887777777776
Q ss_pred HHHHHHHHHHH
Q psy10797 350 QLREKDDANFK 360 (517)
Q Consensus 350 qL~EkED~n~K 360 (517)
.+.+-+..-.+
T Consensus 219 e~~~~q~~tq~ 229 (1265)
T KOG0976|consen 219 ELHKDQENTQK 229 (1265)
T ss_pred HHHHHHHHHHH
Confidence 65544443333
No 115
>KOG2177|consensus
Probab=96.61 E-value=0.00074 Score=63.04 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=34.5
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCN 504 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~ 504 (517)
.++.|+||.+.+++ |||.||..|+...+. ..-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 67899999998877 999999999999987 567999999
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.60 E-value=0.98 Score=50.99 Aligned_cols=10 Identities=0% Similarity=-0.313 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy10797 274 EFRKFACVVR 283 (517)
Q Consensus 274 elr~rlk~l~ 283 (517)
+++.+++++.
T Consensus 213 ~le~el~~l~ 222 (650)
T TIGR03185 213 ALEAELKEQS 222 (650)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 117
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.59 E-value=0.23 Score=57.20 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhHHHHhhc---CcHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKL---ADEEAMRKIK-------QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkl---ad~Eal~rL~-------~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
.||.||+-++..++...+.- ...|..-.|. .|+.++.+..+.++.++..++-|+..||..- +.
T Consensus 398 qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~-------~E 470 (861)
T PF15254_consen 398 QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK-------EE 470 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH-------HH
Confidence 89999999999887633221 1123222222 3444444554445545444444555444433 33
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 344 NSRLLQQLREKDD-----------ANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412 (517)
Q Consensus 344 NqrklqqL~EkED-----------~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~ 412 (517)
|+++...+.|+|+ ...|+-.|--.|-.+...+.-..++.+.|++.|...+.--.+.|.+|.|.-|.|+.
T Consensus 471 nk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 471 NKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 33334444444555666666677888889898888888778899999999999886
Q ss_pred HHHH
Q psy10797 413 VLTN 416 (517)
Q Consensus 413 kLs~ 416 (517)
..+.
T Consensus 551 Sma~ 554 (861)
T PF15254_consen 551 SMAK 554 (861)
T ss_pred HHHH
Confidence 4433
No 118
>KOG0018|consensus
Probab=96.56 E-value=0.43 Score=56.67 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ----QLREKDDANFKLMTERIKSNQLHKLA 375 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq----qL~EkED~n~KL~aEK~KAdQKyfaa 375 (517)
.|+...+..++..+..+..+.++.+.+-.||..++.+.+.+...-++.-+ .+.-.|+.+..---.+-+|.- .+
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~---~~ 379 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACK---EA 379 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhh---hh
Confidence 56667777777777777777788888888888888777665544444333 566666666443322222221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.++.+.++.+.+.-+..++.-......+++
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~ 409 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEA 409 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 566666666666655555543333333333
No 119
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.55 E-value=1.8 Score=50.53 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQV 386 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Ev 386 (517)
.-++.|+..+.++++..+.|.+|++.+..-++.-..+..++=.++....+....+..|-.+..-.+...-++...|...+
T Consensus 322 ~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 322 QHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666788888888888888888888888888888888877777777777766665555555555444444444
Q ss_pred HHHHHHH
Q psy10797 387 QALSLQI 393 (517)
Q Consensus 387 k~Lk~Ql 393 (517)
-+|..++
T Consensus 402 e~Lee~l 408 (775)
T PF10174_consen 402 ENLEEQL 408 (775)
T ss_pred HHHHHHH
Confidence 4444443
No 120
>KOG0311|consensus
Probab=96.54 E-value=0.00043 Score=72.67 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=37.1
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|++|.+-.|. |+|.||.+||...+..-...||+|++
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk 87 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRK 87 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 67899999997766 99999999999999998999999998
No 121
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.53 E-value=0.26 Score=56.06 Aligned_cols=48 Identities=10% Similarity=-0.075 Sum_probs=25.8
Q ss_pred eecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHH
Q psy10797 241 SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDE 289 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~ 289 (517)
.+.+.+.++.+.|..|..|+...+... ..++.-..+++.+++.++...
T Consensus 202 ql~~l~~~l~~aE~~l~~fk~~~~l~~-~~~~~~~~~~L~~l~~ql~~a 249 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAYRAQSDLLM-GNNATLATQQLAELNTELSRA 249 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcc-cCCccchHHHHHHHHHHHHHH
Confidence 345555666666677777776322222 133333346676666665543
No 122
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.52 E-value=0.42 Score=51.53 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=52.0
Q ss_pred eeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 239 FVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 239 ~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~ 317 (517)
.=.+..++.++++.+..|..|+. +... +-.+...+..++..+++.+.. +..++..+++.++.|+.++.
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~~~~~~~~l~~l~~~l~~---------~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQEGDYYSEISEAQEELEA---------ARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc--CccchhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777777777765 2211 112233455556666555533 22333344444444444332
Q ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 ---------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 318 ---------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
....+...+..|+..+..-|.+-.-....+-.++.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~ 289 (498)
T TIGR03007 236 GEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEE 289 (498)
T ss_pred cCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 233344445555555555555444444444444443333
No 123
>KOG0999|consensus
Probab=96.48 E-value=0.86 Score=51.19 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhhHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy10797 273 LEFRKFACVVRDSKRDERKK-LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR----- 346 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqk-lad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr----- 346 (517)
+.+|+.|+.+.+.+.+-... .-. +..=+ .+-+|.++|+++++.++.+++..-.||+.+.+||-+.+++.++
T Consensus 11 e~lr~eierLT~el~q~t~e~~qa--AeyGL-~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g 87 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQA--AEYGL-ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDG 87 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35677777777666542111 000 11112 2335667999999999999999999999999999999888765
Q ss_pred ------HHHHHHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy10797 347 ------LLQQLREKDDA----NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH-------TAIRKLEEKERF 409 (517)
Q Consensus 347 ------klqqL~EkED~----n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~-------e~I~kLeE~Er~ 409 (517)
++++-+.+|.+ +.+|-.|--+..|-.-....+.+.++..++.+........ ..|...+..|..
T Consensus 88 ~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 88 EEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 3445555555556666666666666666666554332222 223333444444
Q ss_pred HHHHHHHHHHH
Q psy10797 410 LQTVLTNAEKE 420 (517)
Q Consensus 410 L~~kLs~lEKE 420 (517)
|.+.-+.+|.+
T Consensus 168 llseYSELEEE 178 (772)
T KOG0999|consen 168 LLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHh
Confidence 44444555444
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=96.44 E-value=2 Score=49.92 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=8.4
Q ss_pred hcCccccccccccc
Q psy10797 66 LNGQNTAKRSNHLN 79 (517)
Q Consensus 66 ~~~~~~~~~~~~~~ 79 (517)
+-|.|.+..|+-+.
T Consensus 28 I~G~NGsGKSsile 41 (895)
T PRK01156 28 ITGKNGAGKSSIVD 41 (895)
T ss_pred EECCCCCCHHHHHH
Confidence 45666666666553
No 125
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=96.43 E-value=1.3 Score=48.92 Aligned_cols=102 Identities=12% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF----KLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~----KL~aEK~KAdQKyfaamreKd 380 (517)
.+.+.+.++.++....++...+..++..+...++..++.+..++..+.+.+++.. .|..+-...+.+.|. ...++
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~ 136 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQ 136 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3334444444444444444444444444555555544444444444444333332 122233333333333 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKE 407 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~E 407 (517)
.|+.-++-++.+++.-.+.|..++..+
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~ 163 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGKE 163 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666555443
No 126
>KOG0963|consensus
Probab=96.42 E-value=0.88 Score=51.48 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 410 LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 410 L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
...+++.+|++++.....++..++++..- ...+++|.+|.
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs 354 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS 354 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH
Confidence 33455666666666666665555444332 22344444444
No 127
>KOG0995|consensus
Probab=96.36 E-value=2.5 Score=47.62 Aligned_cols=76 Identities=25% Similarity=0.307 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD---DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE---D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
..++..+.+.+||+.-+.-.+.++.+|..|-.++.-.. +.+-++..|+.|-++-...+..++|.+.+++-.++.++
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~ 369 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI 369 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444555555555555555555555555544444321 22344556666666666666666666666665555543
No 128
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.32 E-value=0.55 Score=54.17 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 272 SLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 272 e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
|+.+..||.+++...+.-|+. +....+|.++|......+.++.+.+-.|...+-...+++...-.|+++|+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~---------~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQE---------LSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666666666666554333 33444567777777777778888888888888888889999999999999
Q ss_pred HHHHHHHHHHH--HHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy10797 352 REKDDANFKLM--TERIKSNQLHKLARE-EKDTLREQVQALSLQIE 394 (517)
Q Consensus 352 ~EkED~n~KL~--aEK~KAdQKyfaamr-eKdaLe~Evk~Lk~Qle 394 (517)
+|+|+.|+-|. .--.|..|.=|-.++ |...++.|+..|+.|++
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998773 345666666554333 66666666666666543
No 129
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.0021 Score=66.79 Aligned_cols=35 Identities=14% Similarity=0.412 Sum_probs=28.5
Q ss_pred ccccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797 479 SYFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL 513 (517)
Q Consensus 479 ~CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI 513 (517)
.|||.||..||+.-+......||.|+. ..++++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 399999999999987666679999999 66565544
No 130
>KOG0977|consensus
Probab=96.30 E-value=1.2 Score=49.99 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEA---MHTAIRKLEEKERFLQT 412 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~Qlek---Q~e~I~kLeE~Er~L~~ 412 (517)
+..+.+....++.+++.|++++.. +-..+.+..|.|..++.
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~ 200 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV 200 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555433 33344445556655553
No 131
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.30 E-value=1.4 Score=53.12 Aligned_cols=11 Identities=0% Similarity=-0.142 Sum_probs=6.3
Q ss_pred HHHHhHhhhhc
Q psy10797 251 FYKSRWFDFRS 261 (517)
Q Consensus 251 al~~~l~~~~~ 261 (517)
.++.+|+.+.+
T Consensus 27 ~iq~~l~~~~~ 37 (1109)
T PRK10929 27 QITQELEQAKA 37 (1109)
T ss_pred HHHHHHHHhhc
Confidence 45566666555
No 132
>KOG0612|consensus
Probab=96.30 E-value=0.86 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=14.1
Q ss_pred cccCCCCCCCCCCCCccccccchhhhh
Q psy10797 34 LIPMSPHHKMMPGTGRDMKMIESDQVR 60 (517)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (517)
||-++.|-|. ...|.=|||-....||
T Consensus 207 Lld~~GHikL-ADFGsClkm~~dG~V~ 232 (1317)
T KOG0612|consen 207 LLDKSGHIKL-ADFGSCLKMDADGTVR 232 (1317)
T ss_pred EecccCcEee-ccchhHHhcCCCCcEE
Confidence 4555555443 4456666665555554
No 133
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.29 E-value=1.9 Score=50.34 Aligned_cols=100 Identities=23% Similarity=0.294 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhhhH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER--------------IKSNQLH 372 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK--------------~KAdQKy 372 (517)
..++.++.+|..++.+..++.+++++......|++.-...+--+++.++.....|.+|. .|..+..
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888889999999999999999999998888888888999999888888765 3334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
-.+.+++..+..|+.-++-.+++....|.+|..+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444443
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.21 E-value=0.5 Score=49.49 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
...+++-..+|..+.....+.+..|+++.++..++....+-|++.+...
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444444444555555555555555555555555555554444443
No 135
>KOG0979|consensus
Probab=96.18 E-value=1.8 Score=51.43 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.9
Q ss_pred CCcccCCCC
Q psy10797 32 SSLIPMSPH 40 (517)
Q Consensus 32 ~~~~~~~~~ 40 (517)
.|+|-|.-|
T Consensus 20 GsIvrI~l~ 28 (1072)
T KOG0979|consen 20 GSIVRIELH 28 (1072)
T ss_pred CceEEEEEe
Confidence 344444433
No 136
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.17 E-value=1 Score=47.72 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhHHHHhhcC--cHH-----HHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLA--DEE-----AMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkla--d~E-----al~rL~~lE~EieeLr~kL~ 317 (517)
++++++.++++++.+++++.. +++ ..++++.++.++...+.+..
T Consensus 182 ~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 232 (444)
T TIGR03017 182 ALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVM 232 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888752 221 23666666666666555544
No 137
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.16 E-value=2.1 Score=48.02 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=76.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 312 LQKQVATHKQEEEALLNEMEVTGQAFEDM------QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 312 Lr~kL~s~eqe~eALlsEIEsIgqAyEdm------QeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
|...|+..+..++.|..||+.+.++|-=. +.+-++.++ +.++...-+...-.+..+.|..+.+..+.+++.
T Consensus 314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~---el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~ 390 (570)
T COG4477 314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELK---ELESVLDEILENIEAQEVAYSELQDNLEEIEKA 390 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 33445566788888888999888888532 222333343 344433333334444567788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 386 vk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
+...+...++-.+.+.+|.+.|..-+..+..+.+++...+.-++.
T Consensus 391 l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek 435 (570)
T COG4477 391 LTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEK 435 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888878888888888887777776666666666655544443
No 138
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.14 E-value=0.0022 Score=66.42 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=33.9
Q ss_pred ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++|++|.--..+ |+|.||.+||+..+-.-.-+||+|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 3899999875555 99999999999988777789999987
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.11 E-value=1.5 Score=45.58 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 316 VATHKQEEEALLNEMEVTGQAFEDMQEQNS 345 (517)
Q Consensus 316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNq 345 (517)
++.++++.+.|...++.+...+.++.+...
T Consensus 158 ~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~ 187 (325)
T PF08317_consen 158 LELLQEDYAKLDKQLEQLDELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333333333
No 140
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.10 E-value=2.1 Score=50.00 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=85.7
Q ss_pred chhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10797 244 TSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL--ADEEAMRKIKQLEDQTHQLQKQVATHKQ 321 (517)
Q Consensus 244 ~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl--ad~Eal~rL~~lE~EieeLr~kL~s~eq 321 (517)
-|++.+.+|+.+|+..-. .-..++.||..+..+++.+=+.+ +.+|-.++|..+-..+ -.+.++.+.
T Consensus 21 kae~e~~~lk~~l~~~~~---------~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~---s~e~e~~~~ 88 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQ---------QKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKK---SKEWEKIKS 88 (769)
T ss_pred HHHHHHHHHHHHHHHHHH---------HhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH---hHHHHHHHH
Confidence 477888889988886543 23345667777777776553332 3444444442221111 000111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396 (517)
Q Consensus 322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ 396 (517)
+ |-..|..+++-+......|..+..-|.+++..+.+|.-+|..++.....++.-.+++++|+..|+-.+--.
T Consensus 89 ~---le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 89 E---LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred H---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222333444455556666667777889999999999999999999999999999999999888765433
No 141
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.09 E-value=0.25 Score=55.71 Aligned_cols=122 Identities=17% Similarity=0.223 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEE----ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 376 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~e----ALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam 376 (517)
-|++|+.-++.-..++..+.++-+ -|..|+..+..+...-....+++++++.+.......+..|--.-++.|..+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333322 3556666666666655566666777777777766666666665566666666
Q ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 377 EEKDTLR---------EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 377 reKdaLe---------~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
.+.+.+. ..+-..-..+.||++.|.+.-..-|.++..+..++-.|.
T Consensus 475 ~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 475 KELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 334445577899999999988888888888877776664
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.07 E-value=0.46 Score=44.97 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe 342 (517)
+...+..+.+|..+++..++....+.+|++.+...+...++
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~ 123 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRE 123 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333344444444444444444444555555555544443
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.07 E-value=0.1 Score=54.20 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA 388 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~ 388 (517)
+++++.+++.++++++.+..|++.+++..+++..+...+-.+..+.++...+.. ..+.....+......+...
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~-------~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW-------REYNELQLELIEFQEERDS 117 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333333332222222 2233333344444445555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 389 LSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 389 Lk~QlekQ~e~I~kLeE 405 (517)
++.|.+.....+.+|+.
T Consensus 118 l~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555544
No 144
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.07 E-value=1.8 Score=43.13 Aligned_cols=140 Identities=14% Similarity=0.250 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hh-hhhhhH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL---LQQLREKDDANFKLMTE---RI-KSNQLH 372 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk---lqqL~EkED~n~KL~aE---K~-KAdQKy 372 (517)
+.|+..+.+.+.....+.....+-+.++.++.+++++|-|+...-.+. +..+..-|+...+-+.| ++ +..|+|
T Consensus 55 ~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry 134 (207)
T PF05010_consen 55 QMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY 134 (207)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666677778888899999999999999988776544 34445555555554432 22 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK----ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLH 448 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~----Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~q 448 (517)
.++.. +...+++..++.|.++... -..|+..|-..+=++..+...++.-.+...|+++-.++|...
T Consensus 135 ~aLK~----------hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 135 QALKA----------HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 2234444555555544432 234555555554455555556655556667777777777654
Q ss_pred H
Q psy10797 449 L 449 (517)
Q Consensus 449 L 449 (517)
+
T Consensus 205 ~ 205 (207)
T PF05010_consen 205 M 205 (207)
T ss_pred h
Confidence 3
No 145
>KOG0287|consensus
Probab=96.01 E-value=0.0016 Score=68.32 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
..++|-||.+-++- |+|.||.-||.+.+.. +-.||+|.. ...|++.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRN 74 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhh
Confidence 45899999998777 9999999999999976 679999998 6666553
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.98 E-value=4.4 Score=49.99 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=8.6
Q ss_pred hhHHHHHHhHhhhhc
Q psy10797 247 FQMSFYKSRWFDFRS 261 (517)
Q Consensus 247 ~~~~al~~~l~~~~~ 261 (517)
.|+++|+.+|..+..
T Consensus 742 ~ri~el~~~IaeL~~ 756 (1353)
T TIGR02680 742 RRIAELDARLAAVDD 756 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666665554
No 147
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.92 E-value=1.7 Score=53.42 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-QNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-QNqrklqqL~EkED~n~KL~aEK~KAdQKyfa 374 (517)
++....++..-..+++++..++.+++..+ .++.|.+.|+.... ....+..++.........+..+.-++.+....
T Consensus 219 ~~~i~~l~e~~~~~~~~~~~le~l~~~~~----~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1353)
T TIGR02680 219 DDELTDVADALEQLDEYRDELERLEALER----ALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELET 294 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666665543 33445555555444 44555666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
+.++.+.++.++..+..+.+...+.+..|++
T Consensus 295 ~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~ 325 (1353)
T TIGR02680 295 AREEERELDARTEALEREADALRTRLEALQG 325 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666666666666666555555555443
No 148
>KOG0964|consensus
Probab=95.92 E-value=4.3 Score=48.45 Aligned_cols=127 Identities=21% Similarity=0.272 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF--------------EDMQEQ-------NSRLLQQLREKDDAN 358 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy--------------EdmQeQ-------NqrklqqL~EkED~n 358 (517)
.++...+.+++++..++..++.....|..|-+.+..-+ +++|.| -+..+..+.+.++.+
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 44444555555555555555544444444444443332 233332 344566666666666
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHH
Q psy10797 359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSL---------------------------QIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~---------------------------QlekQ~e~I~kLeE~Er~L~ 411 (517)
.+---|-.+-.=+|.++.++-+.+...+..|+. .+++.+..|...++.+..++
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq 417 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQ 417 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 666666666777788777776666666666554 23444445556666777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 412 TVLTNAEKELHLRNQ 426 (517)
Q Consensus 412 ~kLs~lEKEL~~lkq 426 (517)
..+.++++++...-.
T Consensus 418 ~e~~~~e~~l~~~~e 432 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLE 432 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777654433
No 149
>KOG4643|consensus
Probab=95.88 E-value=3.1 Score=49.65 Aligned_cols=52 Identities=25% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL 382 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL 382 (517)
..++.-.+.|++..+++++++++.+|.-.+|+.|+-|+-+-.....+..+.-
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4488888999999999999999999999999999999877776666554444
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.86 E-value=1.4 Score=47.47 Aligned_cols=34 Identities=6% Similarity=-0.222 Sum_probs=18.1
Q ss_pred ceeecccCcc-eeeeecchhhhHHHHHHhHhhhhc
Q psy10797 228 CFDIFSLTST-LFVSICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 228 c~~i~~l~~~-~~~~~~~a~~~~~al~~~l~~~~~ 261 (517)
+-.+..|+.+ +.-.+..+++++.+++.++.++..
T Consensus 84 G~~L~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 84 GDLLVVYDNGNEENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred CCEEEEECchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 333445566666666666666643
No 151
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.86 E-value=2 Score=42.13 Aligned_cols=51 Identities=8% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr 346 (517)
.|.-+-|..-..|+..|+..+...+..+.++...|.....-...+..++++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466777777777777777777766666666666555555555555444
No 152
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.85 E-value=0.0034 Score=50.19 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=25.7
Q ss_pred cccccccccccccc------cccccchhhHHHHH-hhhccCCCC--CC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRY-ETRQRKCPK--CN 504 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl-~tR~RKCP~--C~ 504 (517)
..++|+|....+++ |+|+|..+.|.+++ ..+..+||. |+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 45899998887777 99999999999999 445669998 64
No 153
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.82 E-value=1.6 Score=40.74 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel 452 (517)
+..+..|+.|++.-......|......|.......+...+++..+....+++..+++++
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555555544444444444444444444444444455555555555555555443
No 154
>KOG0979|consensus
Probab=95.82 E-value=1.6 Score=51.82 Aligned_cols=103 Identities=16% Similarity=0.279 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
..|..+++.-.+|...++..++..+.|..|++.+++-.+...+.-.. ...+.-++ ...++ .+=-+-+++|.+.+.++
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~-~~~Ie~l~-~k~~~-v~y~~~~~ey~~~k~~~ 257 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK-KSKIELLE-KKKKW-VEYKKHDREYNAYKQAK 257 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-Hhccc-cchHhhhHHHHHHHHHH
Confidence 55555666666677777777777777777777777777765443221 11111111 11222 23345567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
+.+..+++.+..-...-...+..|+.
T Consensus 258 ~r~k~~~r~l~k~~~pi~~~~eeLe~ 283 (1072)
T KOG0979|consen 258 DRAKKELRKLEKEIKPIEDKKEELES 283 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence 77777777766554444444444444
No 155
>KOG4807|consensus
Probab=95.80 E-value=1.1 Score=48.69 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=49.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797 270 YGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ----VATHKQEEEALLNEMEVT-GQAFEDMQEQN 344 (517)
Q Consensus 270 ~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~k----L~s~eqe~eALlsEIEsI-gqAyEdmQeQN 344 (517)
.|.+.|+++|.+++.....-|-...+++. .+..++.. ...+++..+-=..+||.. .+-.+++|.|.
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e~~q~---------~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqH 361 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGEAPQS---------ALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQH 361 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCchh---------hHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888888877666554443322221 11111111 113445555556677665 45678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797 345 SRLLQQLREKDDANFKLMTERIKS 368 (517)
Q Consensus 345 qrklqqL~EkED~n~KL~aEK~KA 368 (517)
++-++.|++-.|. |.+|-.-|
T Consensus 362 qRELekLreEKdr---LLAEETAA 382 (593)
T KOG4807|consen 362 QRELEKLREEKDR---LLAEETAA 382 (593)
T ss_pred HHHHHHHHHHHHh---hhhhhhhh
Confidence 9988888765553 34444444
No 156
>KOG1103|consensus
Probab=95.79 E-value=1.8 Score=46.53 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL-LQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk-lqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
..-||.|-++|+++++=-..+-.-...+-+.++--.++-.....++ ++-+.|......|...|+.||.+.--.+.++|.
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdks 220 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKS 220 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCcc
Confidence 3456666667776665222221111122223333333322222222 344567777888888888888887776666651
Q ss_pred -------HHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 -------TLREQV-QAL--SLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 381 -------aLe~Ev-k~L--k~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
.+..|. +-| .+|++|+ |+.+.-.-..|+.++...+|.-+.++..+++.+
T Consensus 221 r~~k~eee~aaERerglqteaqvek~---i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 221 RTKKGEEEAAAERERGLQTEAQVEKL---IEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred ccCCChHHHHHHHhhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221 111 1223332 223322223466666666666666666665554
No 157
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.79 E-value=1.5 Score=48.48 Aligned_cols=171 Identities=14% Similarity=0.192 Sum_probs=97.5
Q ss_pred eeecccCcceeeeecchhhhHHHHHHhHhhhh----cCCccccccccc-----HHHHHHHHHHHhhhHHHHhhcCc--HH
Q psy10797 229 FDIFSLTSTLFVSICTSAFQMSFYKSRWFDFR----SLSDSASNIYGS-----LEFRKFACVVRDSKRDERKKLAD--EE 297 (517)
Q Consensus 229 ~~i~~l~~~~~~~~~~a~~~~~al~~~l~~~~----~~~d~~~~i~~e-----~elr~rlk~l~e~~~k~rqklad--~E 297 (517)
+++.+=++.+-|.+..+..-+..++..|..++ ..+........- ..|+.++..++++.+.+...+-. -+
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~ 184 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVE 184 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 55555556667778888888999999999982 233332221111 35555666665555443322211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVA-------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE 364 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~-------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE 364 (517)
-+.++-..|.+...|...+. ..++..+.+..+.+...+||.+....+++-+ .++|..+..|-..
T Consensus 185 fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL---q~kEklI~~LK~~ 261 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL---QSKEKLIESLKEG 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHhc
Confidence 12444444444444443333 4445666777777777777777775555544 3455555555432
Q ss_pred hhh-hhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 365 RIK-SNQL------HKLAREEKDTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 365 K~K-AdQK------yfaamreKdaLe~Evk~Lk~QlekQ~e~I~k 402 (517)
-.. .-+. ...++.|++.+..+++.|+.|++.....++.
T Consensus 262 ~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d 306 (511)
T PF09787_consen 262 CLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQD 306 (511)
T ss_pred ccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1111 5678889999999999999888544444433
No 158
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.74 E-value=3.1 Score=47.04 Aligned_cols=21 Identities=0% Similarity=-0.124 Sum_probs=15.5
Q ss_pred eecchhhhHHHHHHhHhhhhc
Q psy10797 241 SICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~ 261 (517)
....+..++++|+..+..+..
T Consensus 203 ~~~~~~~~~~~le~el~~l~~ 223 (650)
T TIGR03185 203 LPSSILSEIEALEAELKEQSE 223 (650)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887766
No 159
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.73 E-value=3.3 Score=43.60 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSL-QIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~-QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
...++.+|..++..+..-+. .+++....|.+|+-.....+..+..+.++--.+.++++
T Consensus 115 l~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 115 LNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 33444555555444443332 23444444444443333344444444444434444443
No 160
>KOG0802|consensus
Probab=95.65 E-value=0.005 Score=67.88 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=32.3
Q ss_pred ccccccccccc--------cc--cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 467 EFSAKFVNFRR--------KS--YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~--------K~--CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.-.|+||.+.. |- |+|+|+..|++.|++ |+..||.|+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~ 338 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRT 338 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchh
Confidence 45899999842 22 999999999999997 5889999998
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.55 E-value=2.5 Score=46.86 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797 322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 376 (517)
Q Consensus 322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam 376 (517)
+.+-.++|=+.+-.-.+.+--+-.++...+.+++-...-..-+--|.=++|..+.
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333333333333334444433
No 162
>KOG2879|consensus
Probab=95.51 E-value=0.0065 Score=62.30 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=33.4
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~ 505 (517)
..-.|++|...+-. |+|++|..||.++.... .=.||.||.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 33579999998877 99999999999987653 238999998
No 163
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.50 E-value=0.57 Score=42.76 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKL-ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqkl-ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
.+++...+.+.++..+|.+.+ .-.++...|..+.++...++..+..++.+.++...+++.-...|+.-.
T Consensus 31 ~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 31 EDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 355555666666666665554 345567788888888888888888887777777777777777777633
No 164
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.50 E-value=2.2 Score=47.44 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQ 392 (517)
Q Consensus 380 daLe~Evk~Lk~Q 392 (517)
+.++..+..++..
T Consensus 304 ~ele~RL~~l~~L 316 (563)
T TIGR00634 304 NEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 165
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.49 E-value=3.2 Score=41.74 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREK 354 (517)
Q Consensus 337 yEdmQeQNqrklqqL~Ek 354 (517)
+..+....++.|.+++.+
T Consensus 125 l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444444
No 166
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=95.37 E-value=1.8 Score=38.32 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~ 384 (517)
...++..++..|+.++++.. .-++.+.+-|+.+...-..+-.++..-+..+..--..+.+|.++.....+.+.....
T Consensus 5 kkre~~~~~~~l~~kr~e~~---~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 5 KKREMFLVQLALDTKREEIE---RREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777754 445556667777777777777777788888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
++..|+.+++.....|.++++.-..+.
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888654443
No 167
>KOG0995|consensus
Probab=95.32 E-value=4.2 Score=45.88 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~ 401 (517)
-++.+.+..++..|+.++++|.--++
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~ 332 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGE 332 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 34556666667777777776653333
No 168
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.26 E-value=3.2 Score=41.22 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE--RIKSNQLHKLAREEK 379 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE--K~KAdQKyfaamreK 379 (517)
+..||..+......+...+.....+.+++-.+...=+..+.+-......+.+.+.....+... ..=+.-....+.-+.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 344455555555555555555555666666666666665555555555555544443332111 111122333344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
..+..++..++..+........=++-.-..+..++..++.++..++..+..
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554443222222222222222444556666666666666544
No 169
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.24 E-value=4.6 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
..|.....+.+..+..+.+.++.|..++..|+...
T Consensus 166 ~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 166 AKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555556666666666665543
No 170
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.23 E-value=0.0067 Score=59.94 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=32.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
-+|.|.||...++. |||.||..|--.++.. --+|..|++
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk 238 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGK 238 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecch
Confidence 45999999998888 9999999998887754 457888877
No 171
>KOG4172|consensus
Probab=95.22 E-value=0.0037 Score=50.42 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=40.4
Q ss_pred cccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797 468 FSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLY 514 (517)
Q Consensus 468 ~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy 514 (517)
-.|+||.+++-| |||+ .|.+|--+-.+.-.-.||.|++...||.+-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 469999999998 9998 6999988877767889999999888887766
No 172
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.15 E-value=1.5 Score=51.21 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=69.4
Q ss_pred cchhhhHHHHHHhHhhhhcCC-ccc----ccccccHHHHHHHHHHHhhhHHHHhhcC--c---HHHHHHHHHHHHHHHHH
Q psy10797 243 CTSAFQMSFYKSRWFDFRSLS-DSA----SNIYGSLEFRKFACVVRDSKRDERKKLA--D---EEAMRKIKQLEDQTHQL 312 (517)
Q Consensus 243 ~~a~~~~~al~~~l~~~~~~~-d~~----~~i~~e~elr~rlk~l~e~~~k~rqkla--d---~Eal~rL~~lE~EieeL 312 (517)
+...+..++++..+..+.+.. +.. .......++..++..++.....-...++ . +....+|..+|..+++|
T Consensus 557 qDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eL 636 (769)
T PF05911_consen 557 QDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEEL 636 (769)
T ss_pred HHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666665521 111 1111122444445544443333222221 1 22336777777777788
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797 313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS 368 (517)
Q Consensus 313 r~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA 368 (517)
+.+|+..++...++..+|+.+..-|+.+..+..-.-..+...-.++..|-.|--+.
T Consensus 637 q~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 637 QSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887888888888877777777766555444444444444444443333
No 173
>KOG4807|consensus
Probab=95.07 E-value=6.6 Score=42.94 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+.|++++..-.+-+.+|.++|--+...+-. .|- -..|......++.+.|..-++.|+..+.
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaq---alE----aerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQ---ALE----AERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 445555555555555555555433222111 111 1235555666777777777776665543
No 174
>PF13514 AAA_27: AAA domain
Probab=95.06 E-value=5.3 Score=48.02 Aligned_cols=37 Identities=5% Similarity=0.241 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
..+.....++..++.+++..+++.+.+..++..+-..
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555444
No 175
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.06 E-value=0.8 Score=52.43 Aligned_cols=19 Identities=11% Similarity=-0.026 Sum_probs=10.0
Q ss_pred eeecchhhhHHHHHHhHhh
Q psy10797 240 VSICTSAFQMSFYKSRWFD 258 (517)
Q Consensus 240 ~~~~~a~~~~~al~~~l~~ 258 (517)
+....-+.-+++|...|..
T Consensus 202 ~~~~~~~~~~~~l~~~l~V 220 (726)
T PRK09841 202 LSQRTELEAINALQETFTV 220 (726)
T ss_pred EEecCHHHHHHHHHhcCeE
Confidence 4444444555556665553
No 176
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.03 E-value=3.7 Score=39.91 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
+.||+.. +-|+.++.++.+++..+.........+..+++....--++...++..-+. ...||.......++.....
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~--~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA--AGREDLAREALQRKADLEE 98 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHH
Confidence 4466633 77777777777777777777777777777777777776666666655443 3466666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
....+....+....++..|+.++.+....|..++.+...+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665554444
No 177
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.02 E-value=7.9 Score=43.62 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.0
Q ss_pred hhhhHHHHHHhHhhhhcCCcccccccccH
Q psy10797 245 SAFQMSFYKSRWFDFRSLSDSASNIYGSL 273 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~ 273 (517)
-+.+++..+..|++|-...+.+++|.+.+
T Consensus 169 lEk~Le~i~~~l~qf~~lt~~Gd~ieA~e 197 (570)
T COG4477 169 LEKKLENIEEELSQFVELTSSGDYIEARE 197 (570)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 45677778888888888777777777766
No 178
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.02 E-value=3.3 Score=39.25 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 336 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415 (517)
Q Consensus 336 AyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs 415 (517)
-|+.++-.|+.+...+.|+.....+|-.--.+.-|.....++....+..+...++..+....+.+.++.+.-........
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999998888888766666667777777777777777777777776666666666665444444444
Q ss_pred HHHHHHHHH
Q psy10797 416 NAEKELHLR 424 (517)
Q Consensus 416 ~lEKEL~~l 424 (517)
.+.++...+
T Consensus 123 k~~~~~~~l 131 (177)
T PF13870_consen 123 KLRKQNKKL 131 (177)
T ss_pred HHHHHHHHH
Confidence 444444433
No 179
>KOG0804|consensus
Probab=95.01 E-value=0.9 Score=49.83 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 315 QVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 315 kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
+++..++.++.+..|.+.+.++-.++...-
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k 377 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEK 377 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 555555555555555555555555544433
No 180
>KOG0804|consensus
Probab=94.93 E-value=1.6 Score=47.95 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
.|...-+..++++++..+++++..+++-.....-++|.++.|.+.......
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~ 417 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG 417 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556666777888888888888888877777777777777777654443333
No 181
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.92 E-value=0.007 Score=68.62 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred eeecchhhhHHHHHHhHhhhhcCCcccccccccH-HHHH---HHHHHHhhhHHHHhhc
Q psy10797 240 VSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSL-EFRK---FACVVRDSKRDERKKL 293 (517)
Q Consensus 240 ~~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~-elr~---rlk~l~e~~~k~rqkl 293 (517)
..+...+..+..|+.....+...+..++..+-|- .+|. |+..++....+||+|+
T Consensus 267 ~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKL 324 (713)
T PF05622_consen 267 IELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKL 324 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444444444442 3333 2333444444555554
No 182
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.91 E-value=3.8 Score=39.35 Aligned_cols=121 Identities=16% Similarity=0.248 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-------
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH------- 372 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy------- 372 (517)
.=.+....|.++|+..|+..+.+..-...|+|.+++.+..+......-=.++....+.-.|-.-|+++.=|..
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~ 99 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555677888888888888888888888888888887665553333333322333333333433333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 -KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE 420 (517)
Q Consensus 373 -faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE 420 (517)
..++.-.|.|+..++.+...+++....+.++.=.-.-|...|.++...
T Consensus 100 E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~ 148 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQ 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444455555555555555555555555444444444444444333
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.86 E-value=4.4 Score=42.53 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=16.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 361 L~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
|+....+.+..+..+.+..+.|..|+..|+...
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444455555555555555555555443
No 184
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.84 E-value=3.6 Score=38.79 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 355 DDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE 420 (517)
Q Consensus 355 ED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE 420 (517)
++.+..++.++.....-..+++++|+.|..+ +.+-++.|+.|+-....+...|..+|.+
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~-------lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKE-------LQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333334334333333344455555555544 4455555666665555555555555555
No 185
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.83 E-value=0.02 Score=57.65 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=38.2
Q ss_pred cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEee
Q psy10797 466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLY 514 (517)
Q Consensus 466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIy 514 (517)
..|.|||....+.. |||||+..++++- . ....||.|+. ...||..|-
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEEEec
Confidence 56999997765422 9999999999996 3 3568999999 889998774
No 186
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.83 E-value=4.4 Score=39.81 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
.+=+.-|..+.++|++++.+.+..++....+..|...+....+.++..+..+-.++...+.
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455889999999999999999988888888888888888888888888777777766554
No 187
>PRK11519 tyrosine kinase; Provisional
Probab=94.81 E-value=1.4 Score=50.50 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLN 328 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALls 328 (517)
.+.+-++=+++++.+++.+|+..+++.+.+..
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444433
No 188
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.80 E-value=3.9 Score=40.54 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNq 345 (517)
+++.++.+++.++...+.+..+|+...+-.++.++.+.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 189
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.80 E-value=4.7 Score=39.96 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe 322 (517)
+..+|..+..++.+++...+.++.+
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~ 42 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRR 42 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 190
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.80 E-value=2.9 Score=43.96 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
.++.|+.++..++.++..|-.|...+-..-....++.+.++.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d 203 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD 203 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH
Confidence 4578999999999999999888877777666666666666543
No 191
>KOG0249|consensus
Probab=94.79 E-value=2.4 Score=49.01 Aligned_cols=109 Identities=25% Similarity=0.287 Sum_probs=59.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHhh-hhhhhHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF----KL---MTERI-KSNQLHKLAREEKDT 381 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~----KL---~aEK~-KAdQKyfaamreKda 381 (517)
.+|...++++....+---.=+++|.+-++..++.|+.+. ....+++.|. .| +-|+. -+.++-.++.++|+.
T Consensus 142 ael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~-rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~ 220 (916)
T KOG0249|consen 142 AELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ-RARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNR 220 (916)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444445566666666666554432 2222222221 11 00111 134556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
|..|+.+++++++.....-.++...+..|+.++..++.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888888877766655555555555555555553
No 192
>KOG1853|consensus
Probab=94.77 E-value=6 Score=41.04 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
.+|.++.+|+.++..++.++.-|..|.+++-.-+++ |..+-++|...++|.+..+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888888766665 4444556666666666554
No 193
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.76 E-value=3.7 Score=45.41 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=57.5
Q ss_pred hhHHHHHHhHhhhhc-CC----cccccccccHHHHHHHHHHHhhhHH----------------------HHhhcCcHHHH
Q psy10797 247 FQMSFYKSRWFDFRS-LS----DSASNIYGSLEFRKFACVVRDSKRD----------------------ERKKLADEEAM 299 (517)
Q Consensus 247 ~~~~al~~~l~~~~~-~~----d~~~~i~~e~elr~rlk~l~e~~~k----------------------~rqklad~Eal 299 (517)
..-=||+..|-.++. +- -++..=.+-.-|+.+|++++-.-.+ |+-.+.--|..
T Consensus 310 eedmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~ 389 (527)
T PF15066_consen 310 EEDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIE 389 (527)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHH
Confidence 344678888887776 22 2222222334677788877754433 22222333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr 346 (517)
..+.-|.+-++.-++.|...+.+-++|.-|++.|-.-|--+|+.-.-
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44445555555555666666777777777777777777776665443
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.71 E-value=1.8 Score=45.08 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
.-+.+..+|-.|-.++..+.+++....+++..++.-+|.
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 333444444555555555555555555555554444444
No 195
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.69 E-value=2.8 Score=41.90 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 352 ~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
.....++.++..|+....+.|..+.++.+.++..++.++.+++.+.+.|.+|++.-..+.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555666777888899999999999999999999998888888877654443
No 196
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.68 E-value=5.4 Score=40.10 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 272 SLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 272 e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
-+++...++........-+..+ ......+..++.+++.|..+........+.+....+.+-+.-+++......+...+
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~--~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i 103 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQL--DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI 103 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433322222 22223355555666666665555555555555555544444444444444444444
Q ss_pred HHHHHH
Q psy10797 352 REKDDA 357 (517)
Q Consensus 352 ~EkED~ 357 (517)
.+.-+.
T Consensus 104 ~~l~~~ 109 (264)
T PF06008_consen 104 QELIEQ 109 (264)
T ss_pred HHHHHH
Confidence 433333
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.66 E-value=3.6 Score=37.96 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 272 SLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 272 e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
..++..=+.-+.+.....++-+. .++...++..++.+++.|...++.++...+.+-.|+.........++.++..+-..
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655444442 55666788888888888888888888887777777777777777766666666665
Q ss_pred HHHHHHHHHHH
Q psy10797 351 LREKDDANFKL 361 (517)
Q Consensus 351 L~EkED~n~KL 361 (517)
+...-|.+.|+
T Consensus 110 ~k~~kee~~kl 120 (151)
T PF11559_consen 110 LKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 198
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.63 E-value=3.3 Score=41.95 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
+++....++.++.+++.++.+++..+.+...+..|++.....++..+.+.
T Consensus 75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l 124 (334)
T TIGR00998 75 PTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKL 124 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666555555566666666665555544443
No 199
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.60 E-value=4.7 Score=43.12 Aligned_cols=62 Identities=29% Similarity=0.308 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
-++++.||++++.||....+-..|.-.+ +..+..-..-++.|++.|+.|+++.......-+|
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~-------~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGD-------IQHLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 3567888888888888877755554333 3333333344445555555555544444433333
No 200
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.60 E-value=3.1 Score=48.21 Aligned_cols=19 Identities=47% Similarity=0.625 Sum_probs=10.6
Q ss_pred cCcHHHHHHHHHHHHHHHH
Q psy10797 293 LADEEAMRKIKQLEDQTHQ 311 (517)
Q Consensus 293 lad~Eal~rL~~lE~Eiee 311 (517)
.+.++..+|++.+..+.++
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~ 576 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQ 576 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666555555543
No 201
>KOG1937|consensus
Probab=94.56 E-value=9.3 Score=42.33 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=10.6
Q ss_pred ecchhhhHHHHHHhHhhhhc
Q psy10797 242 ICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 242 ~~~a~~~~~al~~~l~~~~~ 261 (517)
+..-..|...+++.|..+..
T Consensus 260 les~~sq~~e~~selE~llk 279 (521)
T KOG1937|consen 260 LESKRSQFEEQNSELEKLLK 279 (521)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 34444555566666655544
No 202
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.55 E-value=3.2 Score=39.29 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
++.++.+++..+..+.++.+.+-..+.....-+++.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455544444444444444444444433333
No 203
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.021 Score=60.95 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=35.1
Q ss_pred hccccccccccccccc---------cc-------c--cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 461 EFGKDREFSAKFVNFR---------RK-------S--YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 461 EKLKk~e~kC~iC~~r---------~K-------~--CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|+|-...=-|.+|+|. || - |||.|=-+|++.|++ |+..||.|+.
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~ 342 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRR 342 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccC
Confidence 4443255679999985 22 2 999999999999997 7889999998
No 204
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.53 E-value=0.01 Score=69.02 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcCc---------HHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLAD---------EEA----MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad---------~Ea----l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
++...+..++.....-+.++.. +++ ..+|..++.++++++.+..+++..-.-|..|++.+..-.+..
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555421 111 155566666666666666666666666666666666555555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 341 QEQNSRLL-------QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTV 413 (517)
Q Consensus 341 QeQNqrkl-------qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~k 413 (517)
+..+..+- .++.++......+..| ..++.++...+..++-.|+..++...+.+..++-..+.|+..
T Consensus 369 ~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e-------~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~E 441 (859)
T PF01576_consen 369 QAAAAELEKKQRKFDKQLAEWKAKVEELQAE-------RDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDE 441 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 54432222 3333333333333222 234455556666666666666666666666666666666655
Q ss_pred HHHHHHHHH
Q psy10797 414 LTNAEKELH 422 (517)
Q Consensus 414 Ls~lEKEL~ 422 (517)
|.++..++.
T Consensus 442 l~dl~~q~~ 450 (859)
T PF01576_consen 442 LEDLTSQLD 450 (859)
T ss_dssp ---------
T ss_pred hccchhhhh
Confidence 555444443
No 205
>KOG2660|consensus
Probab=94.48 E-value=0.018 Score=60.34 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=34.1
Q ss_pred ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
-..|.+|.--+.| |.|.||..||-+.++. ...||.|+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i 58 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDI 58 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccce
Confidence 3579999987766 9999999999999987 899999998
No 206
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=7.1 Score=40.44 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFL 410 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L 410 (517)
+.=..+|.++++.++.|
T Consensus 144 ~aDk~ile~qk~dk~~L 160 (265)
T COG3883 144 DADKKILEQQKEDKKSL 160 (265)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33333444444433333
No 207
>KOG0946|consensus
Probab=94.43 E-value=7.6 Score=45.66 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
.++...|.++..+.+++++...+|..|.+.+..++.+..++-+++..|+...+-
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666777777788888888887777777776666665554443
No 208
>KOG4643|consensus
Probab=94.41 E-value=15 Score=44.16 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEd 339 (517)
+..|.+.|..|+++...++..
T Consensus 441 L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 441 LQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 334444444455554444444
No 209
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.37 E-value=16 Score=44.08 Aligned_cols=19 Identities=0% Similarity=-0.375 Sum_probs=8.6
Q ss_pred eecchhhhHHHHHHhHhhh
Q psy10797 241 SICTSAFQMSFYKSRWFDF 259 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~ 259 (517)
........+..++..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~ 249 (1047)
T PRK10246 231 EEKQLLTAQQQQQQSLNWL 249 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 210
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.34 E-value=0.65 Score=45.97 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
.|.+..++.++|.|+++|+.+++..+++.+....|+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456667888888888888888888776654444443
No 211
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.34 E-value=12 Score=42.66 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
+..++..++.+++.|+..+....++.+....+.+.+++.++
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555544444
No 212
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.23 E-value=6.6 Score=39.19 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN-SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN-qrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
+...|.++.+|+.+++.+...+. +|..+-..|+..-.+. ...=.+....+..+.++..||-. +..+..
T Consensus 18 ~~~~E~e~~~l~~k~~e~~~~~~----~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq-------~~~dL~ 86 (207)
T PF05010_consen 18 VAEKEEEEQELKKKYEELHKENQ----EMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQ-------AYADLN 86 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHH-------HHHHHH
Confidence 33445566666666665555433 3333333333322221 01111122223333444444322 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
+++.-...|-...+++.+.|.-++.-|..|...+.+....+....
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e 131 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEE 131 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555555556666677777777777777777766655555444333
No 213
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.21 E-value=14 Score=42.88 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
.+++.|++........|.....+-++|.+|++.+-++...
T Consensus 268 ~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~ 307 (786)
T PF05483_consen 268 DKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE 307 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555666777778888888877776655
No 214
>KOG0163|consensus
Probab=94.20 E-value=9 Score=44.97 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
.+.+...+..+-+.. -+...++....+.....+|++|-++++.-.-..+.+++|++...++|+++-.....|-+|..+
T Consensus 844 ~l~kns~k~~ei~s~--lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~ 921 (1259)
T KOG0163|consen 844 ALLKNSLKTIEILSR--LKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIE 921 (1259)
T ss_pred HHHHhhHHHHHHHHH--HhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444455555544433 223567777778888888899988888655555678899999999999987777654444443
Q ss_pred HHHHHHH
Q psy10797 354 KDDANFK 360 (517)
Q Consensus 354 kED~n~K 360 (517)
--++..|
T Consensus 922 e~er~rk 928 (1259)
T KOG0163|consen 922 ELERLRK 928 (1259)
T ss_pred HHHHHHH
Confidence 3333333
No 215
>KOG4628|consensus
Probab=94.13 E-value=0.027 Score=59.60 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=33.5
Q ss_pred cccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.-|-||.+.++. |.|.|=..||+.||.+..+.||.|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 489999998877 99999999999999876445999998
No 216
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.10 E-value=6.4 Score=39.61 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=65.1
Q ss_pred cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..||+.+ +.|...+.++.+++..++..-.....+..+++....--+++++++..-++. ..|+...+
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~--g~E~LAr~---------- 89 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA--GNEDLARE---------- 89 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHH----------
Confidence 4455522 666666667667776666666666666666666665555655555544431 12333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
+-.++..++..+..++.++..+.+.+.+++.....|..++..++.+..
T Consensus 90 ----al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 90 ----ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666666666665555444
No 217
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=8.1 Score=41.74 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHhhhHHHHhhc--CcH-H----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 272 SLEFRKFACVVRDSKRDERKKL--ADE-E----AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 272 e~elr~rlk~l~e~~~k~rqkl--ad~-E----al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
.++++.+++..+.....++... .+. . ..+....+..++...+.+....++....+..+.+.-..+.-....-+
T Consensus 204 l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~ 283 (458)
T COG3206 204 LEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLE 283 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhc
Confidence 3478888888888877776664 231 1 12555566666666677777777776666666666654444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 345 SRLLQQLREKDDANFK 360 (517)
Q Consensus 345 qrklqqL~EkED~n~K 360 (517)
..-+++|+++...+..
T Consensus 284 s~~i~~Lr~~~~~~~~ 299 (458)
T COG3206 284 SPTIQDLRQQYAQVRQ 299 (458)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4456666666554433
No 218
>KOG0946|consensus
Probab=93.99 E-value=7.3 Score=45.81 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIE 331 (517)
|..+..+++.|++.+..++.+.+.|..|+.
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444444444444433
No 219
>KOG0962|consensus
Probab=93.99 E-value=21 Score=44.10 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797 253 KSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 253 ~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl 293 (517)
+..++...+ .|.+.+.+++..+++.+.+.+.++....++..
T Consensus 801 ~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~ 842 (1294)
T KOG0962|consen 801 EKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEI 842 (1294)
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 66667888888888888888877777766654
No 220
>KOG0962|consensus
Probab=93.99 E-value=15 Score=45.24 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQ-------NSRLLQQLREKDDANFKL 361 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQ-------NqrklqqL~EkED~n~KL 361 (517)
.+.++++..+|+++.+|+.... ...+...-+..+++....+|+++..+ +++++.++-++.+.....
T Consensus 874 ~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~ 953 (1294)
T KOG0962|consen 874 ERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQI 953 (1294)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777766666544 22333344445555566666665444 566677777877777776
Q ss_pred HHHhhhhhhhHHH
Q psy10797 362 MTERIKSNQLHKL 374 (517)
Q Consensus 362 ~aEK~KAdQKyfa 374 (517)
+.......|..|.
T Consensus 954 ~~~~~~~~~~~~~ 966 (1294)
T KOG0962|consen 954 YKLNECFEQYGFD 966 (1294)
T ss_pred HHhHHHHHHHhhh
Confidence 6666555554443
No 221
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.89 E-value=4.9 Score=41.50 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk 390 (517)
++..+|...++-+.+.|..+..+.+..+.+++.++
T Consensus 138 ~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~ 172 (346)
T PRK10476 138 ERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQAL 172 (346)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555565655555554444444444333
No 222
>PRK10698 phage shock protein PspA; Provisional
Probab=93.82 E-value=7.8 Score=38.63 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=74.8
Q ss_pred cCcHHH-H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 293 LADEEA-M-RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 293 lad~Ea-l-~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..||+. + +-|...+.++.+++..++..-.+...+-.+++.....-++...++..-|. ...||.......+|....+
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~ 99 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTD 99 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 457773 2 66777777888888887777777677777777777766666666665554 3456655555566666655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
+...+..+.+.....+..|+.++.+....|.+.+.+...|..+.
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555554444433
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.73 E-value=1.3 Score=46.24 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 353 EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
+.++...+|..|.....+....+.++.+.+++|+..++.+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555544444433
No 224
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.67 E-value=5.1 Score=40.51 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~ 352 (517)
.+|+.||..+++..++.+..+ .+..+++..|+.+...++..-..+++....+..++..|...-.+..+...++-.++.
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L--~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEAL--EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777766555 444455555555555555544445555555555666666655555555566666666
Q ss_pred HHHHHHHHHHHH
Q psy10797 353 EKDDANFKLMTE 364 (517)
Q Consensus 353 EkED~n~KL~aE 364 (517)
+.+..+.+|..+
T Consensus 86 e~~~~i~~l~ee 97 (246)
T PF00769_consen 86 EAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655433
No 225
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.66 E-value=6.5 Score=41.90 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQ-KQVATHKQEEEALLNEMEVTGQ 335 (517)
Q Consensus 300 ~rL~~lE~EieeLr-~kL~s~eqe~eALlsEIEsIgq 335 (517)
..|..++.++.-|. ..|+..++....|..|++.+.+
T Consensus 246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444442 2455666666666666665543
No 226
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.60 E-value=5.6 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~lkqal 428 (517)
|+.+.++|..++.++..++..+
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si 655 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASI 655 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333333
No 227
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.55 E-value=9 Score=40.06 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q psy10797 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED--------------MQEQNSRLLQQLREKDDANF 359 (517)
Q Consensus 294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd--------------mQeQNqrklqqL~EkED~n~ 359 (517)
.+.-|+++|..+|.+++.|++.-....=. ||++++|+++ +...|+.++....+.|....
T Consensus 12 L~~~aLqKIqelE~QldkLkKE~qQrQfQ-------leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 12 LPTRALQKIQELEQQLDKLKKERQQRQFQ-------LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45667788888888887777654433322 3344444433 34444555544444444444
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
||..| ...-+.++.-|..|+......|.+|+..-+.+.
T Consensus 85 Klshd--------------lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 85 KLSHD--------------LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HhhHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 333344444455555555555555544444444
No 228
>KOG0288|consensus
Probab=93.53 E-value=3.1 Score=45.47 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
|+..++++-|+...++..++..+..+.+++.+-+...+.+..++|+.|..+..+...
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777888888888888887877788888888877777655544
No 229
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.53 E-value=11 Score=39.43 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyE 338 (517)
++++.|-.-+..+..=|+
T Consensus 135 ~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 230
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.51 E-value=13 Score=40.18 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=25.3
Q ss_pred hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797 245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl 293 (517)
...++...+.....+..-.+..+.-.++....+...+++..+...+.+.
T Consensus 207 lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~ 255 (458)
T COG3206 207 LRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARL 255 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555522332223444455666777777766655554
No 231
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.50 E-value=5.3 Score=46.48 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHH
Q psy10797 88 LIAQLRRKTERM 99 (517)
Q Consensus 88 ~~~~~~~~~~~~ 99 (517)
=|..|+.|.+++
T Consensus 127 ei~~Le~k~~~~ 138 (762)
T PLN03229 127 QIISLESKYQQA 138 (762)
T ss_pred HHHHHHHHHHHH
Confidence 355666665554
No 232
>KOG0018|consensus
Probab=93.50 E-value=11 Score=45.53 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
........++++|+.++.+.+...+++..||+...|-|.
T Consensus 317 k~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg 355 (1141)
T KOG0018|consen 317 KDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERG 355 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556678889999999999999999999999999665
No 233
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=93.47 E-value=3 Score=45.79 Aligned_cols=107 Identities=11% Similarity=-0.030 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhhHHHHhhc--CcHHHH-----HHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKL--ADEEAM-----RKIKQLEDQTHQLQKQVATHKQ-------EEEALLNEMEVTGQAFED 339 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkl--ad~Eal-----~rL~~lE~EieeLr~kL~s~eq-------e~eALlsEIEsIgqAyEd 339 (517)
..++|++++...+..+|.+. -||+.. .-|..||.|+.+++.+|+.+.. +...|..+|..|++-.++
T Consensus 253 ~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~ 332 (434)
T PRK15178 253 SAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 66778888888888888775 377755 7788999999988888886643 345566666666655554
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797 340 MQEQNS------RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 340 mQeQNq------rklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~ 384 (517)
.+.... .+-..+.+. ..|..|.-=|++.|.+++...|.-..
T Consensus 333 er~kl~~~~g~~~la~~laeY----e~L~le~efAe~~y~sAlaaLE~AR~ 379 (434)
T PRK15178 333 QRNRLSNKLGSQGSSESLSLF----EDLRLQSEIAKARWESALQTLQQGKL 379 (434)
T ss_pred HHHHhhcCCCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321 111122222 34556666677777776665544333
No 234
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.45 E-value=7 Score=36.87 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
.+|..+|++++..+........+.+.-..||+++..-...|.
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444444443333333
No 235
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.41 E-value=16 Score=40.84 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.4
Q ss_pred cCccccccccc
Q psy10797 67 NGQNTAKRSNH 77 (517)
Q Consensus 67 ~~~~~~~~~~~ 77 (517)
-|.|.+..|+-
T Consensus 28 tG~nGaGKS~l 38 (563)
T TIGR00634 28 TGETGAGKSMI 38 (563)
T ss_pred ECCCCCCHHHH
Confidence 35555555543
No 236
>KOG1003|consensus
Probab=93.40 E-value=9.3 Score=38.17 Aligned_cols=71 Identities=17% Similarity=0.381 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK 367 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~K 367 (517)
+++.++|...|.++++...+.+.-+....-|..|+-.++...+.+...+.+..++.-..+.. +|..++|+|
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~-ik~ltdKLk 154 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEE-LKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHh
Confidence 45667777778887777777777777777777777777777777776666666655544443 344455554
No 237
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.36 E-value=12 Score=39.33 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 411 QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449 (517)
Q Consensus 411 ~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL 449 (517)
+.++.+++.++..++..++....+..+......+++..+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444444444444444444433
No 238
>PF13514 AAA_27: AAA domain
Probab=93.35 E-value=24 Score=42.68 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=22.2
Q ss_pred hhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHh
Q psy10797 245 SAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERK 291 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rq 291 (517)
..+++..=-..|..=++ .|.....+..-.+++++++++......++.
T Consensus 131 ~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~ 178 (1111)
T PF13514_consen 131 VLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQE 178 (1111)
T ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33333333333333333 455544455555566666665555555443
No 239
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.34 E-value=12 Score=39.31 Aligned_cols=116 Identities=23% Similarity=0.314 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
++|..++.++++-+..++.. .....|.+|++.+-..-++..+-...+.++..+.-+.++++ -++.
T Consensus 138 q~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~--------------~~~~ 202 (294)
T COG1340 138 QKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKL--------------FEEA 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 55555555555554444332 34455677777777777777777777777766665555554 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
|.+..+...+...+.+....|..+.+.-+.++..+.++++.+..++.....
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666667777777777777777888888888888777655433
No 240
>KOG0249|consensus
Probab=93.31 E-value=5.7 Score=46.09 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH 397 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~ 397 (517)
.++.+.+-++.|+...-+--+--.+-|.+++.+.-|+.+... -|++.|-++...+-++.+.+.+++.+++.--++..
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhl---kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~ 243 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHL---KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR 243 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433333344444444443333222 25555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 398 TAIRKLEEKERFLQ 411 (517)
Q Consensus 398 e~I~kLeE~Er~L~ 411 (517)
.-+++|.-.+.+|.
T Consensus 244 ~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 244 TDIEDLRGELDQLR 257 (916)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555544444444
No 241
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.26 E-value=9.2 Score=37.71 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=75.9
Q ss_pred cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..||+.. +-|...+.++.+++..++..-.....+..+++.+...-++...++..-|. ...||.......+|....+
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~--~G~EdLAr~Al~~k~~~~~ 99 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS--KGREDLARAALIEKQKAQE 99 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 4567722 66677777777888888777777777777777777777776666666554 3456655555556655555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
....+....+.+...+..|+.++......|..++-+...|..+.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666655555555444433
No 242
>KOG1853|consensus
Probab=93.21 E-value=12 Score=38.90 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|-++++.+++--+++++.|+++-.++...-|+ .+-.|-.--+.-..|+.++.++.++-+.+.+.|.+|+.
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek----------~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEK----------QEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777665443322221 11122222344567888888888888888888888776
No 243
>PF13166 AAA_13: AAA domain
Probab=93.19 E-value=13 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy10797 300 RKIKQLEDQTHQLQKQVAT 318 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s 318 (517)
..+..+...++.++..|++
T Consensus 329 ~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 329 SAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444
No 244
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.15 E-value=7.6 Score=36.42 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLE 404 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLe 404 (517)
....+.+..+.+.++..+.+......+++
T Consensus 109 l~~R~~~~~~~~~~~~~l~~k~~~~~kl~ 137 (218)
T cd07596 109 LDDRADALLTLQSLKKDLASKKAQLEKLK 137 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
No 245
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=93.15 E-value=4.7 Score=44.87 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred hHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 255 RWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 255 ~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.|......||+ .-.+|-.+..+|+++++..+.++-+.. ++...++. -.+++++++-+.......+.=.+|++.+
T Consensus 71 VlG~~d~~pDP--LsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~---g~~L~~v~~~~~~~~~~~~~e~~q~~~L 145 (508)
T PF00901_consen 71 VLGTGDEPPDP--LSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKF---GNDLEKVYKFMKGQEKVEEEEENQIEIL 145 (508)
T ss_pred hccCCCCCCCC--CCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHH
Confidence 44445556666 558888999999999998887655442 33333333 3445555555555555555556799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 377 (517)
Q Consensus 334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr 377 (517)
++|.+.+.+....--.+|..+-++..|=..+|..-..+.=..++
T Consensus 146 ekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr 189 (508)
T PF00901_consen 146 EKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYR 189 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999888888888888888888877777766655544444
No 246
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.13 E-value=0.026 Score=65.69 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-------
Q psy10797 245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA------- 317 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~------- 317 (517)
.++.++++...|+.-++ -.++.-...-+|+.+|.++++.+..+|.- ..-+...-+.+..++++|+..|+
T Consensus 16 ke~El~~~~~~~e~e~~--~~~~l~k~~kelq~~i~el~eeLe~Er~~--R~kaek~r~dL~~ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 16 KEEELSQLNSKLEDEQA--LRAQLQKKIKELQARIEELEEELESERQA--RAKAEKQRRDLSEELEELKERLEEAGGATQ 91 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 34444444444444333 11222234447777788888777665542 22223333345555555555554
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 318 -------THKQEEEALLNEMEVTGQAFEDMQEQN-SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 318 -------s~eqe~eALlsEIEsIgqAyEdmQeQN-qrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
..+.+...|-.+|+......+...... .+--..+.++.+.+-.+.-.|.+++.--..+..+.+.+..++..+
T Consensus 92 aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~ 171 (859)
T PF01576_consen 92 AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSL 171 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233455555556655555444433222 222333344444444443333443333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 390 SLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 390 k~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
..........+.+++..-..++.++...++
T Consensus 172 ~k~k~~~Ek~~K~lE~qL~El~~klee~er 201 (859)
T PF01576_consen 172 QKAKQEAEKKRKQLEAQLNELQAKLEESER 201 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Confidence 333322223333344433333333333333
No 247
>PRK10869 recombination and repair protein; Provisional
Probab=93.12 E-value=13 Score=41.72 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=3.7
Q ss_pred HHHHHhHhhh
Q psy10797 250 SFYKSRWFDF 259 (517)
Q Consensus 250 ~al~~~l~~~ 259 (517)
.+++..+..+
T Consensus 157 ~~~~~~y~~~ 166 (553)
T PRK10869 157 QEMRAAYQLW 166 (553)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 248
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.09 E-value=12 Score=38.61 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT-ERIKSNQLHKLAREEKDTLREQV 386 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a-EK~KAdQKyfaamreKdaLe~Ev 386 (517)
.+++|+.-.+.+.+.+..|..+|.+++.. .......+|++..-.-..+..|-. =..+-.+....+.+-++..+..+
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~s---t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l 83 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDS---TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKL 83 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhh---HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHH
Confidence 44556666666666666666666666532 222233333332222111111100 00001122223334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q psy10797 387 QALSLQIEAMHTAIRKLEEKERFLQT-----------VLTNAEKELHLRNQA 427 (517)
Q Consensus 387 k~Lk~QlekQ~e~I~kLeE~Er~L~~-----------kLs~lEKEL~~lkqa 427 (517)
..|+.|++..+..|.+..+.-+.|.. +++++.++|..++..
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444333331 566666666555433
No 249
>KOG4593|consensus
Probab=93.05 E-value=21 Score=41.36 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK 365 (517)
.+.+...+-+++....+-|+.-..|...+.+++.++++....++.++
T Consensus 177 ~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~ 223 (716)
T KOG4593|consen 177 QEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHE 223 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667778888888888888888888888888888777665544
No 250
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.05 E-value=0.027 Score=63.95 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF---LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~---L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk 446 (517)
++|..-.++.+.+..+++.|+.++...-+.+..|+|.-+. +..++...++++..+++.+....++...+......|+
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888887777777777777775433 4456666666666665555444433333333333344
Q ss_pred HHH
Q psy10797 447 LHL 449 (517)
Q Consensus 447 ~qL 449 (517)
.++
T Consensus 398 ek~ 400 (713)
T PF05622_consen 398 EKL 400 (713)
T ss_dssp ---
T ss_pred HHH
Confidence 333
No 251
>KOG0825|consensus
Probab=93.03 E-value=0.03 Score=64.21 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=33.5
Q ss_pred ccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
+|+.|...+.+ |+|.||..||..|...- -.||.|++ +.-+|..
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhheeeeec
Confidence 57776655544 99999999999998764 49999999 6666653
No 252
>KOG0243|consensus
Probab=93.00 E-value=9.6 Score=45.88 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhh
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEV--TGQAFEDMQEQNSRLLQQLREKDDAN--------------FKLMTERI 366 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEs--IgqAyEdmQeQNqrklqqL~EkED~n--------------~KL~aEK~ 366 (517)
+.+-.||++|+..|.+.++-+.-|++|=-- .+.-++.+.+|..++-.++.++++.+ ..|..++-
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456678888888877655333332222111 11122223333333322332222222 24444444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 367 KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 367 KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
|-.-+...--.+...++.+++.++.++.+-..+|++++..|..+..+...+...+...++.+.
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556666666667777776667777777777776666555555555554444444
No 253
>KOG3039|consensus
Probab=92.92 E-value=0.067 Score=54.58 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797 466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL 513 (517)
Q Consensus 466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI 513 (517)
+.|.|++|++..-| ||||||.+|++.-|... --||.|+. ...|+..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 56999999998777 99999999999998764 48999999 66666543
No 254
>KOG0243|consensus
Probab=92.92 E-value=17 Score=44.00 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=9.4
Q ss_pred CCCCCCCCcccce
Q psy10797 108 LDETTPWDSSFGI 120 (517)
Q Consensus 108 ~~~~~~~~~~~~~ 120 (517)
.|-|.++|-.||-
T Consensus 93 ~~k~ftFDkVFGp 105 (1041)
T KOG0243|consen 93 IDKTFTFDKVFGP 105 (1041)
T ss_pred ccceeecceeeCc
Confidence 5667788877773
No 255
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.81 E-value=23 Score=41.15 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
--|...|.++.+|...|......+.-+..-++.+-.-++.-.-.|..+...+....-.+..+..|.. ..--+.
T Consensus 443 ~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~-------~~~~el 515 (786)
T PF05483_consen 443 GLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETS-------DMALEL 515 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhH
Confidence 4455666677777777776666666666666666655555444444444333333322222222211 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
-.+...+..-+.+.++....|..|++.+..|+..|..+..++
T Consensus 516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel 557 (786)
T PF05483_consen 516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEEL 557 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444555555666666666666666665555444443
No 256
>KOG0288|consensus
Probab=92.78 E-value=6.8 Score=42.91 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN 369 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd 369 (517)
++..+.++.+.+|+.+++..++..+.+.++...+..+++......+.+=..|.++.+.|..+..|++.+.
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777777777777777777777777777777777777643
No 257
>PF15294 Leu_zip: Leucine zipper
Probab=92.77 E-value=14 Score=38.54 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhHHH------HhhcCcHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDE------RKKLADEEAMRKIKQLEDQTH-QLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 274 elr~rlk~l~e~~~k~------rqklad~Eal~rL~~lE~Eie-eLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
...++|+++..-...- .-.+.-+||.+.+..++.-+. +++..+.+..-.+-.|+..|=..++-|
T Consensus 5 kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~ 75 (278)
T PF15294_consen 5 KREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKW 75 (278)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Confidence 4566777775443331 112356677777777776664 555555555555555555544443333
No 258
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.64 E-value=2.1 Score=41.38 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHH
Q psy10797 274 EFRKFACVVRDSKRD 288 (517)
Q Consensus 274 elr~rlk~l~e~~~k 288 (517)
++.++|..++....+
T Consensus 92 el~~~L~~~~~~l~~ 106 (194)
T PF08614_consen 92 ELAQQLVELNDELQE 106 (194)
T ss_dssp ---------------
T ss_pred cccccccccccccch
Confidence 344444444444433
No 259
>KOG1265|consensus
Probab=92.63 E-value=14 Score=44.19 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy10797 330 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH-KLAREEKDTLREQVQALSLQI-EAMHTAIRKLEEKE 407 (517)
Q Consensus 330 IEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy-faamreKdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~E 407 (517)
++.+.+...+.|+.--+.|...-|+|.+-.|-..+|...+... .+-+++|+.++.+++.++..+ ...-+.+.+|++.-
T Consensus 1065 ~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~ 1144 (1189)
T KOG1265|consen 1065 ISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQ 1144 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555444444433333333 677888899999988888765 55566777777754
Q ss_pred HHHHHH
Q psy10797 408 RFLQTV 413 (517)
Q Consensus 408 r~L~~k 413 (517)
..-+.+
T Consensus 1145 ~k~~e~ 1150 (1189)
T KOG1265|consen 1145 SKRQEQ 1150 (1189)
T ss_pred HHHHHH
Confidence 444433
No 260
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.51 E-value=1.9 Score=37.18 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM 362 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~ 362 (517)
...||..+-..|.-|+..++.+++.+..|..|++.+...-+++...|.++-++...+.+++..|.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888889999999999999999999999999999999999999999999999999887764
No 261
>KOG1937|consensus
Probab=92.38 E-value=21 Score=39.66 Aligned_cols=83 Identities=24% Similarity=0.229 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR-EQVQALSLQIEAM 396 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe-~Evk~Lk~QlekQ 396 (517)
++......+.+-|..+.+-|++...-+..+.-++.+.-+. ++.+..+ .+++.+...+.+-
T Consensus 297 KL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~-------------------~e~e~~e~~~IqeleqdL~a~ 357 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKN-------------------LETEDEEIRRIQELEQDLEAV 357 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------------ccchHHHHHHHHHHHHHHHHH
Confidence 3334444444556666777777666555444444432210 0111111 3444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 397 HTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 397 ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
.+.|.+-+|.-..|.+.++.+-+
T Consensus 358 ~eei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 358 DEEIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCc
Confidence 55666656655555555544433
No 262
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.32 E-value=6.6 Score=39.68 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=13.6
Q ss_pred chhhHHHHHhhhccCCCCCCC
Q psy10797 485 FLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 485 C~~CIq~rl~tR~RKCP~C~~ 505 (517)
|..|-+. |..----||.|..
T Consensus 197 C~sC~qq-IHRNAPiCPlCK~ 216 (230)
T PF10146_consen 197 CQSCHQQ-IHRNAPICPLCKA 216 (230)
T ss_pred hHhHHHH-HhcCCCCCccccc
Confidence 7788665 4422348999988
No 263
>KOG1813|consensus
Probab=92.30 E-value=0.045 Score=56.81 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=33.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
-.|+|.+|+..+.+ |+|.||..|--..+. +.-+|+.|++
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~ 283 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQ 283 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccc-cCCcceeccc
Confidence 34899999998877 999999999988874 5679999998
No 264
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.26 E-value=14 Score=39.27 Aligned_cols=7 Identities=43% Similarity=0.064 Sum_probs=2.5
Q ss_pred ecccCcc
Q psy10797 231 IFSLTST 237 (517)
Q Consensus 231 i~~l~~~ 237 (517)
|.+..+.
T Consensus 61 v~a~~~G 67 (421)
T TIGR03794 61 IQSPGSG 67 (421)
T ss_pred EECCCCe
Confidence 3333333
No 265
>KOG4360|consensus
Probab=92.23 E-value=6.9 Score=43.90 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407 (517)
Q Consensus 329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E 407 (517)
||+...+-.-..++.|.+++.+|.+++.++.-+..||--.++..-+....-+.+.+|.+.++.+ ..+.++.+.|.+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk---yAE~m~~~~Eae 295 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK---YAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3444444444566778899999999999999999999888888887777777777877766644 444444444443
No 266
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=92.09 E-value=13 Score=39.95 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
+||...+....+|+.++....++......+|+.+.+|..+...-. ||.+ +.++.+..+=-.|..+ |.-++.+-.
T Consensus 251 ~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~l--kvaq-TRL~~R~~RP~vElcr-D~~q~~L~~-- 324 (384)
T PF03148_consen 251 KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPL--KVAQ-TRLENRTQRPNVELCR-DPPQYGLIE-- 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHH-HHHhhHhcCCchHHHH-hhHHHHHHH--
Confidence 677777777777777777777777777788888888877743221 2222 2344444444445444 455555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
|++.|+..+.+..+.+.+.+...+.|......+|+++..-..++
T Consensus 325 -----Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 325 -----EVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555665555566555555555556666777766555554
No 267
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.02 E-value=33 Score=41.10 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=7.4
Q ss_pred ccccccccccc
Q psy10797 466 REFSAKFVNFR 476 (517)
Q Consensus 466 ~e~kC~iC~~r 476 (517)
..-.||+|...
T Consensus 500 ~~~~cplcgs~ 510 (1042)
T TIGR00618 500 QEEPCPLCGSC 510 (1042)
T ss_pred CCCCCCCCCCC
Confidence 34578888863
No 268
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.91 E-value=16 Score=37.08 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
|...||...+++....+..|...+.....|-.+......+
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee 48 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665555555544444444444333
No 269
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.56 E-value=27 Score=39.16 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTA 399 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~ 399 (517)
..+..+.+..+.|++.|+.+.+.....
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444445555555444443333
No 270
>KOG0993|consensus
Probab=91.52 E-value=26 Score=38.75 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEI-EsIgqAyEdmQeQNqrklqqL~ 352 (517)
.-+....+++..++..+-...+..+-|+.++ ..|++|-.+.+.|+.+++.--.
T Consensus 320 ~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e 373 (542)
T KOG0993|consen 320 HTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARLVVASE 373 (542)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555655555455555555555 3578999999999999886443
No 271
>KOG0297|consensus
Probab=91.46 E-value=0.081 Score=56.53 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=33.5
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+.|++|..-.++ |||.||..|+..++.. +-+||.|..
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~ 64 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQ 64 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCccccc
Confidence 56899998875555 9999999999999876 789999976
No 272
>KOG3564|consensus
Probab=91.35 E-value=2.3 Score=47.23 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
..|+..+-+-|||..+.-++.-.++.+.+|...|.-.++.--|=|.|.+++..|+.-++.+.++.-.++...+|..++|.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHH
Q psy10797 407 ERF 409 (517)
Q Consensus 407 Er~ 409 (517)
-+.
T Consensus 107 l~~ 109 (604)
T KOG3564|consen 107 LKC 109 (604)
T ss_pred Hhc
Confidence 543
No 273
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.28 E-value=7.9 Score=39.15 Aligned_cols=49 Identities=20% Similarity=0.074 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 377 (517)
Q Consensus 329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr 377 (517)
|++.+-+.+..--++.+.--+|+..+|+-+..+-.|+.+..+....+++
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444443333333
No 274
>KOG1571|consensus
Probab=91.26 E-value=0.045 Score=57.93 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.5
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLY 514 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy 514 (517)
..-.|.||.+.++| |||+-| |..-+-.. .+||.|+....-++++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l--~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL--PQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC--CCCchhHHHHHHHHHHh
Confidence 34689999999999 999988 88887655 56999998444444444
No 275
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=91.26 E-value=17 Score=36.37 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFEDMQEQNSRLLQQLRE--KDDANFKLMTERIK--SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 326 LlsEIEsIgqAyEdmQeQNqrklqqL~E--kED~n~KL~aEK~K--AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~ 401 (517)
...+|..+-..++.|..+-..++.++.+ .+|-+.+++.+-.+ ..+--....++..-...-...+...+.+|..+|.
T Consensus 142 ~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~ 221 (296)
T PF13949_consen 142 VIRQLRELLNKLEELKKEREELLEQLKEKLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQ 221 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777777765 23444555553332 1122222233333455556667777888888888
Q ss_pred HHHHHHHHH
Q psy10797 402 KLEEKERFL 410 (517)
Q Consensus 402 kLeE~Er~L 410 (517)
.+.+....+
T Consensus 222 ~i~~~~~~~ 230 (296)
T PF13949_consen 222 EIQEANEEF 230 (296)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888866544
No 276
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=91.24 E-value=11 Score=41.11 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLR--------EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA--M 396 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~--------EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek--Q 396 (517)
..|+++|-.+.+.|-..-..|+..++ ..--.|..|..-|.-+.|-..+..+.|+...+|.+.-.+++.+ .
T Consensus 262 ~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~ 341 (442)
T PF06637_consen 262 GPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECA 341 (442)
T ss_pred cchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999876655555555443 3444566777778888888888888888888776655544322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 397 HTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 397 ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
...---|+|+ .+|+++-.+++|+|...+..++..+
T Consensus 342 rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 342 RQTQLALEEK-AALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222235555 5677777777777766665555443
No 277
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.18 E-value=7.8 Score=38.74 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
.+......++.++....-.+++.+..+.+.++.+++.....+.+++..-.....++..+++++....
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666677777777777666666666666666655555555555555554443
No 278
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.13 E-value=3.4 Score=39.88 Aligned_cols=27 Identities=41% Similarity=0.701 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKE 407 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~E 407 (517)
.+..|+.+|+.+++...+.+.++++..
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444444444433
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.12 E-value=13 Score=38.91 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=7.1
Q ss_pred eecchhhhHHHHHHhH
Q psy10797 241 SICTSAFQMSFYKSRW 256 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l 256 (517)
+...|.+=+..+-..+
T Consensus 71 e~L~Sr~~~~~v~~~l 86 (362)
T TIGR01010 71 EYMRSRDMLAALEKEL 86 (362)
T ss_pred HHHhhHHHHHHHHhcC
Confidence 3444444444444444
No 280
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.95 E-value=31 Score=38.61 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVA 317 (517)
Q Consensus 304 ~lE~EieeLr~kL~ 317 (517)
-||..+++|+.+..
T Consensus 342 yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 342 YLEKKVKELQMKIT 355 (527)
T ss_pred HHHHHHHHHHHHhh
Confidence 45566666665543
No 281
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=90.82 E-value=2.7 Score=44.47 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=77.6
Q ss_pred ccccH---HHHHHHHHHHhhhHHHHhhcC--cHHHH-----HHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHH
Q psy10797 269 IYGSL---EFRKFACVVRDSKRDERKKLA--DEEAM-----RKIKQLEDQTHQLQKQVATHKQEE-------EALLNEME 331 (517)
Q Consensus 269 i~~e~---elr~rlk~l~e~~~k~rqkla--d~Eal-----~rL~~lE~EieeLr~kL~s~eqe~-------eALlsEIE 331 (517)
..+|+ ..+.|++++...+.++|-+.. |++.+ .-+..+|.|+..++.+|+..+.-. -+|..+++
T Consensus 182 r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkarie 261 (372)
T COG3524 182 RFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIE 261 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 34454 457789999999999998874 55544 667889999999999999766433 56677777
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 332 VTGQAFEDMQEQNSRL-----LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 332 sIgqAyEdmQeQNqrk-----lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
+|.+-... |-++. =+.+.++--.-..|..|..=|.+.|-+|+.+.+....|
T Consensus 262 Slrkql~q---e~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsArie 317 (372)
T COG3524 262 SLRKQLLQ---EKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIE 317 (372)
T ss_pred HHHHHHHH---HHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66653322 22211 11333444445568889999999999999977765554
No 282
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=90.75 E-value=18 Score=35.74 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-----QNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-----QNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..|..+|..+.+|.+.++.+-..-..|-.=+..+|.++..+-. -..+.+.++++..+++..+..+-+..|.
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~ 94 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDF 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554433333333333344444443322 2344555555555555555544444433
No 283
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=90.75 E-value=16 Score=35.17 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10797 345 SRLLQQLREKDDANFKLMTER 365 (517)
Q Consensus 345 qrklqqL~EkED~n~KL~aEK 365 (517)
.+.+.++++.-+.+..+..+-
T Consensus 81 ~~~l~~l~~~~~~~~~~~~~~ 101 (236)
T PF09325_consen 81 SEALSQLAEAFEKISELLEEQ 101 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555444444444443
No 284
>KOG1002|consensus
Probab=90.74 E-value=0.094 Score=58.24 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=34.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh----hccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET----RQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t----R~RKCP~C~~ 505 (517)
.+..|.+|.+..++ |-|.||.-||.+.+.. -+-.||+|..
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 67889999998888 9999999999877753 4569999998
No 285
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.15 Score=53.44 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=32.7
Q ss_pred cccccccccc-cc-------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRR-KS-------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~-K~-------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..|-+|..++ |+ |-|.|=-.|++.|+--=.-+||+|+.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt 369 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRT 369 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCC
Confidence 6799999875 44 99999999999999854569999997
No 286
>KOG1785|consensus
Probab=90.63 E-value=0.091 Score=56.66 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=33.4
Q ss_pred ccccccccccc-----cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797 469 SAKFVNFRRKS-----YFFVEFLDCLRTRYETR-QRKCPKCNA 505 (517)
Q Consensus 469 kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR-~RKCP~C~~ 505 (517)
.|.||-++.|| |||+.|..|+-.|-... -..||-|+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 58999999999 99999999999997665 569999998
No 287
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=90.59 E-value=18 Score=35.45 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 388 ~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
++...+.+......+++...+....++..+++++...+.+.+..+
T Consensus 119 ~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~ 163 (216)
T cd07627 119 SAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELK 163 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433222223455556666555554444433
No 288
>KOG4159|consensus
Probab=90.57 E-value=0.12 Score=55.66 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=33.0
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
++|.|-||....-+ |||.||..||++.+. ..-.||.|+-
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~ 126 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRD 126 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccc
Confidence 88999999875433 999999999999776 4569999986
No 289
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.56 E-value=12 Score=43.09 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKL 403 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kL 403 (517)
+++.|+++++..+..+.++
T Consensus 347 ~~~~L~~~~~~l~~~~~~~ 365 (726)
T PRK09841 347 KRQTLEQERKRLNKRVSAM 365 (726)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334444443333333333
No 290
>KOG0298|consensus
Probab=90.50 E-value=1.9 Score=52.52 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+-|++|.+-.++ |||.+|..|...|+.. +++||.|+-
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 44689999996654 9999999999999875 789999987
No 291
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.44 E-value=1.2 Score=41.96 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEAL-LNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eAL-lsEIEsIgqAyEdmQeQN 344 (517)
+++..++.++..++.-...++++|....|+.++.+++.|+.+|+.++...... -.|++.+.+.|+.++..-
T Consensus 90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777889999999999999999999999877633222 246777777777665543
No 292
>PRK12704 phosphodiesterase; Provisional
Probab=90.43 E-value=18 Score=40.50 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~ 352 (517)
++.+....|++.+.+.++++.++...+|..++
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444
No 293
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=90.40 E-value=0.18 Score=43.87 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=23.4
Q ss_pred cccccchhhHHHHHhhh--ccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETR--QRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR--~RKCP~C~~ 505 (517)
|+|.|=..||.+|+++- +..||.|++
T Consensus 52 C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 52 CSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 99999999999999862 469999997
No 294
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.39 E-value=27 Score=37.12 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q psy10797 352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE---------------------KERFL 410 (517)
Q Consensus 352 ~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE---------------------~Er~L 410 (517)
.++++.+..| | |+..++..+.++..++..|...+....+....++.+|.. ..|-|
T Consensus 126 ~ere~lV~qL--E--k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL 201 (319)
T PF09789_consen 126 HEREDLVEQL--E--KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL 201 (319)
T ss_pred hHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 3444444444 3 333445555555555555555554444444444444322 34667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 411 QTVLTNAEKELHLRNQAMDLNKR 433 (517)
Q Consensus 411 ~~kLs~lEKEL~~lkqale~~kk 433 (517)
..+|..++.|...+++++..++.
T Consensus 202 ~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877777776654
No 295
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=90.35 E-value=19 Score=35.30 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797 300 RKIKQLEDQTHQLQKQVATHK-QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN 369 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~e-qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd 369 (517)
.+++.....+.++.......+ -.....+.|.-.+-.|.+++-.+-.++++++...+....|+.+.+.|..
T Consensus 65 ~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 65 AALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555433221 2223367788888899999999999999999999998888876666653
No 296
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=90.27 E-value=18 Score=34.83 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER-IKSNQLHKLAREEKDTL 382 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK-~KAdQKyfaamreKdaL 382 (517)
..+.-+...+...+.++....++-.+++....++++-+.+...+.+.+...++.+..+++.. .=.=+.|-+.++=.+.+
T Consensus 5 a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l 84 (158)
T PF09486_consen 5 AWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVL 84 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 33334444445555666667777778888888888999999999999999999999988721 12245677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 383 REQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 383 e~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
..++..+..++......+....+.
T Consensus 85 ~~~~~~~e~~~a~l~~~l~~~~~~ 108 (158)
T PF09486_consen 85 EERVRAAEAELAALRQALRAAEDE 108 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776665555544444443
No 297
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=90.25 E-value=5.9 Score=34.00 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=53.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 312 LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSL 391 (517)
Q Consensus 312 Lr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~ 391 (517)
|-.-|++.++|++++..|+-.....-+++..+....++++...-..+..|-.- -++-|+..+.|+..|+.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~----------h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA----------HRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 44557788888999999888888888888888777777776666666555333 33444555778888888
Q ss_pred HHHH
Q psy10797 392 QIEA 395 (517)
Q Consensus 392 Qlek 395 (517)
+++.
T Consensus 72 eLe~ 75 (79)
T PF08581_consen 72 ELEQ 75 (79)
T ss_dssp HHCH
T ss_pred HHHh
Confidence 7754
No 298
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.16 E-value=36 Score=38.09 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
|.+.........+.++..+-.++++.+ .++-.++..+..+...+...++.|..+-++|-..+
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVT---TRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433 34445555566666677777777777777776665
No 299
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.11 E-value=0.086 Score=53.66 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=33.3
Q ss_pred ccccccccc-cccc----------cccccchhhHHHHHhhhccCCC--CCCC
Q psy10797 467 EFSAKFVNF-RRKS----------YFFVEFLDCLRTRYETRQRKCP--KCNA 505 (517)
Q Consensus 467 e~kC~iC~~-r~K~----------CgHvFC~~CIq~rl~tR~RKCP--~C~~ 505 (517)
+-+||+|.. |.-| |+|.-|..|+++-+..-+--|| .|++
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 568999986 3333 9999999999999988888999 9998
No 300
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.08 E-value=2.9 Score=41.44 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhHHHHhh
Q psy10797 274 EFRKFACVVRDSKRDERKK 292 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqk 292 (517)
.++.|+.+++...++-+.+
T Consensus 90 ~~~~rlp~le~el~~l~~~ 108 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDK 108 (206)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4455555555444443333
No 301
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.91 E-value=45 Score=38.93 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.++..+.+|+...-.-..++ ..++++...-+-+.+..-..-...++++.|.|.+++..-+.-++.|...+.+|.-
T Consensus 151 eql~~Lt~aHq~~l~sL~~k---~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~ 225 (739)
T PF07111_consen 151 EQLSSLTQAHQEALASLTSK---AEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRK 225 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46666777766543333333 3344444444555555555666777888888888888888888888887777654
No 302
>KOG4265|consensus
Probab=89.68 E-value=0.18 Score=53.39 Aligned_cols=49 Identities=10% Similarity=0.279 Sum_probs=38.1
Q ss_pred cccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeec
Q psy10797 466 REFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIyl 515 (517)
+--+|-||.+..|| |.|+ -|+.|.+.- .--.++||.|+.+..-...||.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHhhheecc
Confidence 34689999999999 9999 699999873 3336899999995555555543
No 303
>KOG2129|consensus
Probab=89.67 E-value=20 Score=39.57 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
|++|..+.-+|... +++|.++|.+- -|+.|+..++.|
T Consensus 181 leQLRre~V~lent---lEQEqEalvN~------LwKrmdkLe~ek 217 (552)
T KOG2129|consen 181 LEQLRREAVQLENT---LEQEQEALVNS------LWKRMDKLEQEK 217 (552)
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHH------HHHHHHHHHHHH
Confidence 35555555555543 45666666653 366666666443
No 304
>KOG1039|consensus
Probab=89.58 E-value=0.17 Score=53.69 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=33.7
Q ss_pred cccccccccccc-------------cccccccchhhHHHHHhhhc------cCCCCCCC
Q psy10797 466 REFSAKFVNFRR-------------KSYFFVEFLDCLRTRYETRQ------RKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~-------------K~CgHvFC~~CIq~rl~tR~------RKCP~C~~ 505 (517)
++..|-||.+.. -+|-|.||..||..|-..++ +.||-|+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv 218 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRV 218 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccC
Confidence 567899998742 11999999999999987777 99999998
No 305
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.48 E-value=3.7 Score=38.67 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF--EDMQEQNSRLLQQLREKDDANFKLMT 363 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy--EdmQeQNqrklqqL~EkED~n~KL~a 363 (517)
..+..+..++.+|+.++..++++...|.+|+..+...- +++..+...+-.++.+.++++..|-.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888999999988888888888888888766 66777777777777777777766643
No 306
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.41 E-value=42 Score=37.88 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=32.0
Q ss_pred chhhhHHHHHHhHhhhhc-CCcccccccccHHHHHH--HHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHH--HHHHHHh
Q psy10797 244 TSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKF--ACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQ--LQKQVAT 318 (517)
Q Consensus 244 ~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~r--lk~l~e~~~k~rqklad~Eal~rL~~lE~Eiee--Lr~kL~s 318 (517)
.-+.|..|+=.+| ++ -|+++.+ +++-.-.| +...+.++.=-+|. -++++||+.||.|.+. |+++++.
T Consensus 265 ~~~~~a~~~~~~~---~~p~~~svpy--~~a~~n~ril~sstes~e~L~qqV---~qs~EKIa~LEqEKEHw~LEaQL~k 336 (518)
T PF10212_consen 265 QYKKRAAAYMSSL---KKPCPESVPY--EEALANRRILLSSTESREGLAQQV---QQSQEKIAKLEQEKEHWMLEAQLAK 336 (518)
T ss_pred HHHHHHHHHHHHh---cCCCCccCCh--HHHHhhhHHHhhhHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555 33 5555543 34322222 33333333221222 2345777777777764 4455553
No 307
>KOG1850|consensus
Probab=89.40 E-value=34 Score=36.74 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
...+.-..+++.+.++++....+++.-..+..++-.+||+.-
T Consensus 226 lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l 267 (391)
T KOG1850|consen 226 LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETL 267 (391)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666666777777666665566666666666644
No 308
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.34 E-value=0.11 Score=59.19 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.+..++..+..++..++..+......+.+|+-
T Consensus 375 ~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLer 406 (722)
T PF05557_consen 375 ELEQEKEQLLKEIEELEASLEALKKLIRRLER 406 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 309
>KOG0824|consensus
Probab=89.33 E-value=0.15 Score=53.25 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=28.4
Q ss_pred cccccccccccccchhhHHHHHhhhccCCCCCCC
Q psy10797 472 FVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 472 iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
+|..+.- |+|.||..||+..+...++.||.|+.
T Consensus 18 n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~ 50 (324)
T KOG0824|consen 18 NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRF 50 (324)
T ss_pred CcCcccc-ccchhhhhhhcchhhcCCCCCceecC
Confidence 3444444 99999999999999999999999998
No 310
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.21 E-value=19 Score=36.95 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk 390 (517)
++..+|...+.-+.+.|..+..+.+....++..++
T Consensus 131 ~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 131 NRQQGLWKSRTISANDLENARSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554444444444433
No 311
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=89.00 E-value=12 Score=38.09 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
|....+..+..+.++..++++++....
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~ 210 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIA 210 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444455555555565555555444333
No 312
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=88.97 E-value=35 Score=36.40 Aligned_cols=18 Identities=6% Similarity=-0.193 Sum_probs=11.1
Q ss_pred eecchhhhHHHHHHhHhh
Q psy10797 241 SICTSAFQMSFYKSRWFD 258 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~ 258 (517)
.++.-+.|++.||..|+.
T Consensus 210 ~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 210 RAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 345556666666666666
No 313
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.83 E-value=71 Score=39.72 Aligned_cols=125 Identities=20% Similarity=0.298 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 335 QAFEDMQEQNSRLLQQLREKDDANFKLMT------ERIKSNQLHKLAR--------EEKDTLREQVQALSLQIEAMHTAI 400 (517)
Q Consensus 335 qAyEdmQeQNqrklqqL~EkED~n~KL~a------EK~KAdQKyfaam--------reKdaLe~Evk~Lk~QlekQ~e~I 400 (517)
.|..-...-..|-|.|+++++|+-..|.+ |.+- |=|-.|++ +=..+|.+|+..|+..-||-.
T Consensus 1100 ~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~-dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker--- 1175 (1320)
T PLN03188 1100 EAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID-DVKKAAARAGVRGAESKFINALAAEISALKVEREKER--- 1175 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34444444556667777777777666542 1110 11111111 123456677777766555433
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcc
Q psy10797 401 RKLEEKERFLQTVLTNA-------EKELHLRNQA---MDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFG 463 (517)
Q Consensus 401 ~kLeE~Er~L~~kLs~l-------EKEL~~lkqa---le~~kkk~~E~sq~~~dLk~qLeel~Ek~~a~LEKL 463 (517)
+-|+|..|.|+.+|-+- ..=|..++.+ +...+++..++.++++.++++++.+++|-..++.-+
T Consensus 1176 ~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~ 1248 (1320)
T PLN03188 1176 RYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTL 1248 (1320)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555566666655432 1112233333 333467777777888888888887776665443333
No 314
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.80 E-value=0.55 Score=53.62 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=0.0
Q ss_pred ccCCCCCC
Q psy10797 25 VEPNGGPS 32 (517)
Q Consensus 25 ~~~~~~~~ 32 (517)
+.+++.||
T Consensus 39 ~~~~~~~s 46 (722)
T PF05557_consen 39 VSTSASSS 46 (722)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44444444
No 315
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=22 Score=40.78 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN---AEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~---lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
+.+-.+.++.|++.|+.-++.+...|.+|+..-..+..++.. ..+++..+....+..++++.|.....+.|+..|+
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666544443332221 2223333344444444444454455555555444
No 316
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.68 E-value=36 Score=36.13 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kL 414 (517)
++....+.+|+...+.|+.+|
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555433
No 317
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.67 E-value=33 Score=35.67 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq 335 (517)
++..+-.++.+++.+.+..+++...|..||+.+..
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444443
No 318
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.67 E-value=23 Score=38.10 Aligned_cols=122 Identities=14% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk 390 (517)
+=|.-+++.++-.+++.+-++.+..-.+.+++...+-+..+..+|.++..-+...+ |.|..+......+..+.++++
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~---~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI---QEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555555556666666666666666667777776666554433 347777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy10797 391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKE------LHLRNQAMDLNKRKA 435 (517)
Q Consensus 391 ~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE------L~~lkqale~~kkk~ 435 (517)
..+......+.++-|.-.....++..-... |...++++...+..+
T Consensus 294 ~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 294 EGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 777666666666555444444433333222 334455555444333
No 319
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.66 E-value=39 Score=37.52 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=11.8
Q ss_pred cchhhhHHHHHHhHhhhhc
Q psy10797 243 CTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 243 ~~a~~~~~al~~~l~~~~~ 261 (517)
.+-++++..|+..|...++
T Consensus 158 ~sL~ekl~lld~al~~~~~ 176 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDG 176 (511)
T ss_pred hhHHHHHHHHHHHHHhcCc
Confidence 4556666666666666555
No 320
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.55 E-value=32 Score=37.02 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 400 IRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIE 437 (517)
Q Consensus 400 I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E 437 (517)
++.++++-+..+..++.+.++|+...+.++..|+.+.|
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444555555444444444444433
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.55 E-value=13 Score=43.36 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=16.6
Q ss_pred CcccCCCCC-CCCCCCCccc------cccchhhhhhhhhhh
Q psy10797 33 SLIPMSPHH-KMMPGTGRDM------KMIESDQVRDLKSQL 66 (517)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~ 66 (517)
-.||+..-+ ..+||.-.|. -.||...+..|..++
T Consensus 191 ~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l 231 (771)
T TIGR01069 191 YVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKL 231 (771)
T ss_pred EEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHH
Confidence 345555432 3456654442 345555555555444
No 322
>KOG4677|consensus
Probab=88.51 E-value=31 Score=38.49 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 383 e~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
.+|+-.++.-.+-+.+.++.+.+.-..|++++.++|.|...++.+...
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 344444455555566667777777777777777777776655555533
No 323
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.16 E-value=5.5 Score=33.50 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy10797 348 LQQLREKDDANFKLMTERIK 367 (517)
Q Consensus 348 lqqL~EkED~n~KL~aEK~K 367 (517)
...++++|+.+..||.|.-|
T Consensus 4 ~~~l~EKDe~Ia~L~eEGek 23 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEK 23 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34567777777777655443
No 324
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.02 E-value=24 Score=33.40 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=70.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 317 ATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396 (517)
Q Consensus 317 ~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ 396 (517)
++++-++..|...||.=..-...|.....+-++.++..-++..-+..|.....+...........+..++..++...++.
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888888888888888888888888888888888777777777777777777777777777766
Q ss_pred HHHHHHHHHHH
Q psy10797 397 HTAIRKLEEKE 407 (517)
Q Consensus 397 ~e~I~kLeE~E 407 (517)
.....++....
T Consensus 125 ~~~~~~l~~~~ 135 (177)
T PF13870_consen 125 RKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
No 325
>KOG1003|consensus
Probab=87.83 E-value=32 Score=34.51 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 339 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 339 dmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
+..++..+|+.-=.++|...-++-+ +..+.+.+-++.-.+...+++|....++..+.....++..+.+..+|
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~----~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEA----AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444443333221 12334445555555555555555555555555555555555554444
No 326
>PF13166 AAA_13: AAA domain
Probab=87.79 E-value=54 Score=37.11 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=7.7
Q ss_pred CCccccccchhhhhh
Q psy10797 47 TGRDMKMIESDQVRD 61 (517)
Q Consensus 47 ~~~~~~~~~~~~~~~ 61 (517)
.+.+.....+|-|++
T Consensus 59 ~~~~i~VFn~dfv~~ 73 (712)
T PF13166_consen 59 ELSSIRVFNSDFVED 73 (712)
T ss_pred CCCceEEeChHHHHH
Confidence 345555555555544
No 327
>KOG0982|consensus
Probab=87.76 E-value=50 Score=36.70 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
.++-.+...+...+.-|+.+.+++.+--+++.|.-..++.++....+
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666655555555544433
No 328
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.44 E-value=41 Score=35.32 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA 388 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~ 388 (517)
++.+..+-..+-.||.-.-++-.....=-.|++..|.....+++-+...++.
T Consensus 204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kk 255 (309)
T PF09728_consen 204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKK 255 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334434444333333333333344566666655555554444333
No 329
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.34 E-value=47 Score=35.90 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
+..+++++....+.|.++|++.+..
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3344444444444444555444433
No 330
>COG5283 Phage-related tail protein [Function unknown]
Probab=87.32 E-value=64 Score=39.78 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=57.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk 390 (517)
.|...+++++.-.+-+-.|+..+-.+-.+.....+.+-.|++--|++..++..----+...|...|++++.+..++.++.
T Consensus 61 ~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~ 140 (1213)
T COG5283 61 GLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLN 140 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444444444444444445555666777887777777666777788888999999999999998
Q ss_pred HHHHHHHHHHH
Q psy10797 391 LQIEAMHTAIR 401 (517)
Q Consensus 391 ~QlekQ~e~I~ 401 (517)
+..-+|.....
T Consensus 141 k~maaQ~~l~e 151 (1213)
T COG5283 141 KSMAAQARLLE 151 (1213)
T ss_pred hhhHHHHHHHH
Confidence 84444444333
No 331
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=68 Score=38.52 Aligned_cols=98 Identities=9% Similarity=-0.054 Sum_probs=55.5
Q ss_pred ccccccccceeccccceeecccCcceeeeecchh--hhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHH
Q psy10797 213 FSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSA--FQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDE 289 (517)
Q Consensus 213 ~~~~~~~~~~~~~~~c~~i~~l~~~~~~~~~~a~--~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~ 289 (517)
|.+.-|-++|-|..--+--++|-+..+++....+ ..++.-.++|..=++ .|-..+.+.--.+.+..+++.+..++.+
T Consensus 128 FDv~gLQeih~ln~k~i~~~LL~sgt~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~y 207 (984)
T COG4717 128 FDVDGLQEIHELNSKGILGYLLFSGTSGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATY 207 (984)
T ss_pred cchhhhHHHHHhhHhhHHHHHHHhccCCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888877778777776544332 233444444444344 5555444444445566666666666666
Q ss_pred HhhcCcHHHH-HHHHHHHHHHH
Q psy10797 290 RKKLADEEAM-RKIKQLEDQTH 310 (517)
Q Consensus 290 rqklad~Eal-~rL~~lE~Eie 310 (517)
++-+.+-+.. ++++.++.++.
T Consensus 208 h~lLe~r~~~~~rl~~l~~elr 229 (984)
T COG4717 208 HKLLESRRAEHARLAELRSELR 229 (984)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6655433332 44444444443
No 332
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=87.21 E-value=44 Score=40.86 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=87.5
Q ss_pred eeeecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHH-HHHHHhhhHH-----HHhhcCcHHHHHHHHHHHHHHHHH
Q psy10797 239 FVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKF-ACVVRDSKRD-----ERKKLADEEAMRKIKQLEDQTHQL 312 (517)
Q Consensus 239 ~~~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~r-lk~l~e~~~k-----~rqklad~Eal~rL~~lE~EieeL 312 (517)
+.+...|+.||++++...+-=--.- ..++.+..++++ +.++=+++.. +..+ -+-|...+|.....+++-|
T Consensus 1007 s~EA~~AK~QMDaIKqmIekKv~L~---~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~-Is~eLReQIq~~KQ~LesL 1082 (1439)
T PF12252_consen 1007 SEEARQAKAQMDAIKQMIEKKVVLQ---ALTQCQDALEKQNIAGALQALNNIPSDKEMSK-ISSELREQIQSVKQDLESL 1082 (1439)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhh-hhHHHHHHHHHHHHHHHHH
Confidence 4577889999999988765321111 334445555443 2222222211 0000 1233335555555555555
Q ss_pred HHHHH--------hhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHH
Q psy10797 313 QKQVA--------THKQEEEALLNEMEVTGQAFED----MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHK-LAREEK 379 (517)
Q Consensus 313 r~kL~--------s~eqe~eALlsEIEsIgqAyEd----mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyf-aamreK 379 (517)
+..+. +.+..+++|+.+|..=-.++|. -.++..+.+..+..+.+.+.-|-.||++..-... -=..+.
T Consensus 1083 QRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDI 1162 (1439)
T PF12252_consen 1083 QRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDI 1162 (1439)
T ss_pred HHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHH
Confidence 54432 3456777887766554444443 4566678888888899988888889887532221 223577
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQI 393 (517)
Q Consensus 380 daLe~Evk~Lk~Ql 393 (517)
+.|+++++.+...+
T Consensus 1163 EkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1163 EKLEKQLQVIHTKL 1176 (1439)
T ss_pred HHHHHHHHHhhhhh
Confidence 88888888887664
No 333
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.08 E-value=10 Score=32.30 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
.+|..+-..|.-|+..++.+++.++.|..|......+-+.+...|.++-++-..+.+++.-|
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777888888899999999999999999999999999999999999988877655
No 334
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.03 E-value=31 Score=33.55 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
.....+-..+..++.++..++.+++.+...+.+|+..-..+..++..++.+...+
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777888888888888888888888887777777777766654433
No 335
>KOG2930|consensus
Probab=86.89 E-value=0.33 Score=43.81 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=23.9
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|-|.|=..||-.||++|+ .||.|++
T Consensus 81 CNHaFH~hCisrWlktr~-vCPLdn~ 105 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRN-VCPLDNK 105 (114)
T ss_pred cchHHHHHHHHHHHhhcC-cCCCcCc
Confidence 999999999999999987 7999998
No 336
>PRK11519 tyrosine kinase; Provisional
Probab=86.88 E-value=45 Score=38.52 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=10.5
Q ss_pred eeeeecchhhhHHHHHHhHhh
Q psy10797 238 LFVSICTSAFQMSFYKSRWFD 258 (517)
Q Consensus 238 ~~~~~~~a~~~~~al~~~l~~ 258 (517)
..|+...-+.-++.|...|..
T Consensus 200 ~~~~~~~~~~~~~~l~~~l~V 220 (719)
T PRK11519 200 FTVTKYSTLGMINNLQNNLTV 220 (719)
T ss_pred EEEEEcCHHHHHHHHHhcceE
Confidence 344444444455556555554
No 337
>KOG4593|consensus
Probab=86.83 E-value=70 Score=37.39 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=16.6
Q ss_pred ccCcceeeeecchhhhHHHHHHhHhhhh
Q psy10797 233 SLTSTLFVSICTSAFQMSFYKSRWFDFR 260 (517)
Q Consensus 233 ~l~~~~~~~~~~a~~~~~al~~~l~~~~ 260 (517)
|-.+.-.-...+++.+.=.++..|..++
T Consensus 48 s~~~~~~s~n~~~~s~~~~~~~~l~~Lq 75 (716)
T KOG4593|consen 48 SMQSEERSENITSKSLLMQLEDELMQLQ 75 (716)
T ss_pred CCCchhhhccchhHHHHHHHHHHHHHHh
Confidence 3344444455666666666766666654
No 338
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=86.80 E-value=38 Score=34.27 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-----QNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-----QNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
.+-|..+|..+.+|-+.++.+-+.-..|-.=+..++++...+-. ...+.+.++++.++++..+..+-+-.+-
T Consensus 28 k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~ 104 (234)
T cd07664 28 QQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADF 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35566666666666666664444444444444444554444332 4566677777777777776554444333
No 339
>KOG2751|consensus
Probab=86.80 E-value=15 Score=40.43 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=59.8
Q ss_pred eeeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHH
Q psy10797 238 LFVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQV 316 (517)
Q Consensus 238 ~~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL 316 (517)
+.-++.++++-...+++=|+.+.+ +++. +++++...++++.+.+.+ ..+.++.+|++-++|-..+
T Consensus 148 ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~-----~~~~~~~e~~~l~~eE~~---------L~q~lk~le~~~~~l~~~l 213 (447)
T KOG2751|consen 148 LDKEVEDAEDEVDTYKACLQRLEQQNQDV-----SEEDLLKELKNLKEEEER---------LLQQLEELEKEEAELDHQL 213 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 444566788888888888888888 6665 566666666666555433 4566667777777777777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 317 ATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 317 ~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
..++.+.+.+..|.....+-|-.++
T Consensus 214 ~e~~~~~~~~~e~~~~~~~ey~~~~ 238 (447)
T KOG2751|consen 214 KELEFKAERLNEEEDQYWREYNNFQ 238 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666655555443
No 340
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.72 E-value=33 Score=33.52 Aligned_cols=57 Identities=18% Similarity=0.365 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
+|-+.|+.--.-||.+|+.....+++|..||..+..-|+.+++....+=.+....+.
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666778999999999999999999999999999988776666555554433
No 341
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.62 E-value=25 Score=41.19 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQ 387 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk 387 (517)
|++.+..++++-+.+-.+++
T Consensus 575 a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 342
>KOG2129|consensus
Probab=86.58 E-value=38 Score=37.56 Aligned_cols=16 Identities=0% Similarity=-0.083 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHHHhhh
Q psy10797 271 GSLEFRKFACVVRDSK 286 (517)
Q Consensus 271 ~e~elr~rlk~l~e~~ 286 (517)
..+++..||..+...-
T Consensus 44 ~~e~l~~rv~slsq~N 59 (552)
T KOG2129|consen 44 PGESLGARVSSLSQRN 59 (552)
T ss_pred CHHHHHHHHHHHHhhh
Confidence 3457777777776443
No 343
>KOG1962|consensus
Probab=86.49 E-value=9.8 Score=38.37 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~ 412 (517)
+.+.++.+|..|..-.-.....+.+..+.++..|+.|.+.-+....+|.|.-..|++
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444444444444333443
No 344
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=86.46 E-value=30 Score=36.11 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhHHHHhhcC--cHHHH-----HHHHHHHHHHHHHHHHHHh
Q psy10797 274 EFRKFACVVRDSKRDERKKLA--DEEAM-----RKIKQLEDQTHQLQKQVAT 318 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkla--d~Eal-----~rL~~lE~EieeLr~kL~s 318 (517)
++++++++++.++..+|.+.. |++.. ..+..++.++.+++.+++.
T Consensus 181 ~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 181 EAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888763 44432 4455555555555555543
No 345
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.34 E-value=75 Score=37.25 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 AIRKLEEKERFLQTVLTNAEKELHL 423 (517)
Q Consensus 399 ~I~kLeE~Er~L~~kLs~lEKEL~~ 423 (517)
.-.+..|.|..+..+|.++|+.|..
T Consensus 576 lqekvsevEsrl~E~L~~~E~rLNe 600 (739)
T PF07111_consen 576 LQEKVSEVESRLREQLSEMEKRLNE 600 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888899999999998864
No 346
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=86.24 E-value=42 Score=34.50 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy10797 416 NAEKEL 421 (517)
Q Consensus 416 ~lEKEL 421 (517)
.+++|+
T Consensus 288 ~l~~ei 293 (297)
T PF02841_consen 288 KLQKEI 293 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 347
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.22 E-value=27 Score=32.10 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
..|+.+|.|+..|+.+++.++++-+.+..||=.+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555433
No 348
>KOG1941|consensus
Probab=85.90 E-value=6.5 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.492 Sum_probs=33.1
Q ss_pred ccccccccccc--cc-------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797 467 EFSAKFVNFRR--KS-------YFFVEFLDCLRTRYETR-QRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~--K~-------CgHvFC~~CIq~rl~tR-~RKCP~C~~ 505 (517)
++.|..|.++. |+ |.|+|=..|.++.++++ .|.||+|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 48899999853 44 99999999999999764 589999996
No 349
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=22 Score=40.83 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 378 EKDTLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 378 eKdaLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
+..+++.++..|+..+..+...|.+|+..
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555443
No 350
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=85.64 E-value=25 Score=31.12 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
..|+..++.....|.++++....++.++.++++++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666655555543
No 351
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=85.49 E-value=40 Score=33.33 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L 410 (517)
+.+-++|+.-|.+.+.-|..+..+|-.... ++.-.++++++...+.|-...+.......+.=..|+..+..+
T Consensus 82 e~~~kr~e~eQa~VQeEL~r~a~rEReAa~--------e~l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fy 153 (187)
T PF05300_consen 82 EELLKRFEQEQAQVQEELARLAQREREAAA--------EHLTRAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFY 153 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455678888888888888888777665442 455567777777777664444333222222223344444555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797 411 QTVLTNAEKELH-LRNQAMDLNKR 433 (517)
Q Consensus 411 ~~kLs~lEKEL~-~lkqale~~kk 433 (517)
..+|+.+|+.-. ..+...+...+
T Consensus 154 keql~~le~k~~e~yk~t~eq~~~ 177 (187)
T PF05300_consen 154 KEQLARLEEKNAEFYKVTSEQYHK 177 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777655 33444444433
No 352
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.46 E-value=44 Score=33.76 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~ 319 (517)
.-+++.|++++..+.+-++.. +.+..+-..+|.++++++...+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~--A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 27 KMLEQAIRDMESELAKARQAL--AQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433 233333334444444444444433
No 353
>KOG4275|consensus
Probab=85.38 E-value=0.095 Score=54.57 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=33.1
Q ss_pred ccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797 467 EFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLY 514 (517)
Q Consensus 467 e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy 514 (517)
.+.|.||.|.+.+ |||+ -|..| .+|+-.||.|++..--|.+||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----Gkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----GKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-----ccccccCchHHHHHHHHHhhh
Confidence 5889999999999 9995 57777 456679999998444455554
No 354
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.27 E-value=9.3 Score=42.07 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+++.+++++++|+.+++..+.+.+++...+.-
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666555533
No 355
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.11 E-value=43 Score=33.32 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHh
Q psy10797 295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE---------KDDANFKLMTER 365 (517)
Q Consensus 295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E---------kED~n~KL~aEK 365 (517)
-++..++|.....++.+++..+.........+..=.+.+.+..-+...+.+..=.++.. .+.....|.+|.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 45566777777777777777776665555555444444444333333332222222222 244455566665
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN 416 (517)
Q Consensus 366 ~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~ 416 (517)
.--+..-..+..+..+...-..-++.+.+-....|.+++..-..|+..+..
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444444444555555666666666665556554444
No 356
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.05 E-value=14 Score=34.36 Aligned_cols=67 Identities=7% Similarity=0.158 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA 435 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~ 435 (517)
+|.+.++...|+-|...+..+-.+++++.+.....++.-..++..++....++...+..+...+.++
T Consensus 53 ~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 53 EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777777777777777776666666666666555555555554444333
No 357
>PRK10869 recombination and repair protein; Provisional
Probab=84.99 E-value=73 Score=35.91 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTH 310 (517)
Q Consensus 300 ~rL~~lE~Eie 310 (517)
+++.-++-+++
T Consensus 185 ~~~d~l~fql~ 195 (553)
T PRK10869 185 ARKQLLQYQLK 195 (553)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 358
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.83 E-value=46 Score=33.41 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe 342 (517)
||.-|+.+|+....+...=.+||=++-...++...
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~ 45 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRA 45 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344444444444433333444443333333333
No 359
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.73 E-value=10 Score=31.89 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq 335 (517)
..|+.|+.++++|+.+..++.++.+.|..|.+.+.+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444443
No 360
>KOG4460|consensus
Probab=84.72 E-value=41 Score=38.46 Aligned_cols=33 Identities=9% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
..+..+.++|.+-+.++++..+||...+.+.-+
T Consensus 665 q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~ 697 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLS 697 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777888888888877777554
No 361
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=84.58 E-value=40 Score=32.54 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN 369 (517)
Q Consensus 324 eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd 369 (517)
...+.|.-.+..|.+++-.+-.+++.++...++...|...++.|+.
T Consensus 110 ~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 110 GEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3345555566666666666666666666666655555554444443
No 362
>KOG3091|consensus
Probab=84.44 E-value=13 Score=41.51 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred eecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 241 SICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~ 319 (517)
++.+...+++++.+.+..+++ +.|. ....++++.|..++. .||=.+=..++-||..=-++
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~---~~KI~~~k~r~~~Ls----------------~RiLRv~ikqeilr~~G~~L 409 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADA---VAKIEEAKNRHVELS----------------HRILRVMIKQEILRKRGYAL 409 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhccCCcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy10797 320 KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT-ERIKSNQLHKLARE--EKDTLREQVQALSLQIEAM 396 (517)
Q Consensus 320 eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a-EK~KAdQKyfaamr--eKdaLe~Evk~Lk~QlekQ 396 (517)
..++|.|-.-+++|-+-.++= .+.--++.+|+. +|++++|.+-.++- +.|.+.+....|..+.|.+
T Consensus 410 ~~~EE~Lr~Kldtll~~ln~P-----------nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l 478 (508)
T KOG3091|consen 410 TPDEEELRAKLDTLLAQLNAP-----------NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEAL 478 (508)
T ss_pred CccHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 397 HTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 397 ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
..++.-++..-+.+. .-+++.+..+++.++
T Consensus 479 ~~Lv~Ilk~d~edi~---~~l~E~~~~~~~~~~ 508 (508)
T KOG3091|consen 479 TKLVNILKGDQEDIK---HQLIEDLEICRKSLE 508 (508)
T ss_pred HHHHHHHHhHHHHHH---HHHHhhHHHHhhhcC
No 363
>KOG0826|consensus
Probab=84.29 E-value=0.31 Score=51.43 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=39.9
Q ss_pred cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797 468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG 516 (517)
Q Consensus 468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt 516 (517)
-.|++|....-| -|-|||..||-..+.+ ..+||.=|. ...++.|+|-+
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHHHHHhcC
Confidence 579999986666 5999999999999985 789999888 77777777754
No 364
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.22 E-value=18 Score=38.09 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhHHHHhhcC--cHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLA--DEE---AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqkla--d~E---al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
-+++..|.+++++.++.=--.| |-| ...++.-|..++++|+..+..++.++.--..|++.+-.+++.++.+...+
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665544211112 333 22677777778888888888888887777888888888999988888888
Q ss_pred HHHHHHHHHHHHH
Q psy10797 348 LQQLREKDDANFK 360 (517)
Q Consensus 348 lqqL~EkED~n~K 360 (517)
-.+|.++|+.+.|
T Consensus 160 re~L~~rdeli~k 172 (302)
T PF09738_consen 160 REQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999888866
No 365
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.20 E-value=61 Score=34.38 Aligned_cols=146 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhh
Q psy10797 305 LEDQTHQLQKQVA----THKQEEEALLNEMEVTGQAFEDMQEQNSR-----------LLQQLREKDDANFKLMTERIKSN 369 (517)
Q Consensus 305 lE~EieeLr~kL~----s~eqe~eALlsEIEsIgqAyEdmQeQNqr-----------klqqL~EkED~n~KL~aEK~KAd 369 (517)
|..+|+.||..++ ...+.+.-|..||+.+-.--++++.-..- --.||..+-..|+.|.++--+-+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EK 83 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEK 83 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEAMHT-------------------------AIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e-------------------------~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
|.-..+-.+.++....+..+-.-.+.+.. .|+.++|....|..+|+.+|.....+
T Consensus 84 q~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsL 163 (305)
T PF14915_consen 84 QNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSL 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 425 NQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 425 kqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
+..+-.-+..+.|-+-..+.++..|.
T Consensus 164 e~elh~trdaLrEKtL~lE~~QrdL~ 189 (305)
T PF14915_consen 164 EIELHHTRDALREKTLALESVQRDLS 189 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=84.16 E-value=45 Score=32.85 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
++...-..+-.+.-.+|+.+..+|...|.+-..|
T Consensus 43 ~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslL 76 (178)
T PF14073_consen 43 SEQNERERAHQELSKQNQDLSSQLSAAETRCSLL 76 (178)
T ss_pred HHhhhhhcccchhhhccHHHHHHHHHHHHHHHHH
Confidence 3344444444555555666666666666655444
No 367
>KOG3970|consensus
Probab=84.07 E-value=0.56 Score=47.60 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=36.2
Q ss_pred hhccccccc--ccccccccccc-------cccccchhhHHHHHhhh-------ccCCCCCCC
Q psy10797 460 LEFGKDREF--SAKFVNFRRKS-------YFFVEFLDCLRTRYETR-------QRKCPKCNA 505 (517)
Q Consensus 460 LEKLKk~e~--kC~iC~~r~K~-------CgHvFC~~CIq~rl~tR-------~RKCP~C~~ 505 (517)
|+=|+.+.| +|++|+....+ |+|+|=+.|+++|-.+= --.||.|+.
T Consensus 41 LqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ 102 (299)
T KOG3970|consen 41 LQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQ 102 (299)
T ss_pred HHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCC
Confidence 444554666 79999997655 99999999999997652 337999998
No 368
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=84.01 E-value=64 Score=34.49 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEAMHTAIRK-LEEK-E-----RFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD 444 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~QlekQ~e~I~k-LeE~-E-----r~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~d 444 (517)
...++++|..|+.|+...+-..+.-...++. -+|. + +.....--.+.-|++.++.-+...++.+..-+|..+-
T Consensus 68 ~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK 147 (351)
T PF07058_consen 68 VQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEK 147 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888877766555444332 1110 0 1111111223334444444444434444444455555
Q ss_pred HHHHHHH
Q psy10797 445 LKLHLVI 451 (517)
Q Consensus 445 Lk~qLee 451 (517)
|+.+|..
T Consensus 148 ~klRLK~ 154 (351)
T PF07058_consen 148 LKLRLKV 154 (351)
T ss_pred HHHHHHH
Confidence 6666553
No 369
>KOG4302|consensus
Probab=84.01 E-value=93 Score=36.30 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Q psy10797 298 AMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-N 369 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA-d 369 (517)
.++.|+.+|+++.+|-..+- ..++....|..++..+..+.++|+.|-...+.++.+.-+.+.+|-.|-.-. +
T Consensus 66 L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~ 145 (660)
T KOG4302|consen 66 LLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED 145 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34667777777777666654 233566688889999999999999999999999998888888886654332 0
Q ss_pred -hhHH------HHHHHHHHHHHHHHHHHHHH
Q psy10797 370 -QLHK------LAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 370 -QKyf------aamreKdaLe~Evk~Lk~Ql 393 (517)
-.++ ...+..+.+..+++.|+.+-
T Consensus 146 ~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek 176 (660)
T KOG4302|consen 146 LPSFLIADESDLSLEKLEELREHLNELQKEK 176 (660)
T ss_pred CCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1111 12345555555555555543
No 370
>KOG4572|consensus
Probab=84.00 E-value=97 Score=37.23 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=50.8
Q ss_pred cccccHHHHHHHHHHHhhhHHHHhhc----------CcHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 268 NIYGSLEFRKFACVVRDSKRDERKKL----------ADEEAM-RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 268 ~i~~e~elr~rlk~l~e~~~k~rqkl----------ad~Eal-~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
+-.++++.++---+..+.+.+++..+ -.+++. +.++..|.+..++|..++.++++.++++.||+.++..
T Consensus 952 ~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eae 1031 (1424)
T KOG4572|consen 952 DEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE 1031 (1424)
T ss_pred CcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555445554444443332 122232 7788889999999999999999999999999998877
Q ss_pred HHHHH
Q psy10797 337 FEDMQ 341 (517)
Q Consensus 337 yEdmQ 341 (517)
.-.+.
T Consensus 1032 IiQek 1036 (1424)
T KOG4572|consen 1032 IIQEK 1036 (1424)
T ss_pred HHhcc
Confidence 65543
No 371
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=83.98 E-value=86 Score=35.90 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=46.3
Q ss_pred hhhHHHHHHhHhhhhcCCccccccccc--HHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797 246 AFQMSFYKSRWFDFRSLSDSASNIYGS--LEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHK 320 (517)
Q Consensus 246 ~~~~~al~~~l~~~~~~~d~~~~i~~e--~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~e 320 (517)
+.-+..|.+.|+.+..+-..+...+.+ ++++.-++++++.....++..- -..+..++..++..+..|+.+++...
T Consensus 98 ~~Sl~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~ 175 (593)
T PRK15374 98 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLD 175 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333445556666666644444444444 3666667777777666655521 24566788888888888888877554
No 372
>KOG4438|consensus
Probab=83.92 E-value=76 Score=35.22 Aligned_cols=174 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhHHHHhhcCcHHHH-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 284 DSKRDERKKLADEEAM-------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 284 e~~~k~rqklad~Eal-------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
...+.+++-.-++.++ .+...+..++++.......-+++...|-.+|+.+.+..-+.-.|-.+++.+
T Consensus 123 a~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e 202 (446)
T KOG4438|consen 123 ALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAE 202 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA-LSLQI----EAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~-Lk~Ql----ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
..++-....-.-.++.+|.--.-...+ |++. |++++ +|..+.+..+++.-...++...+++++-.-+.
T Consensus 203 ~n~~k~s~~s~~~k~l~al~llv~tLe-------e~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 203 YNKMKKSSTSEKNKILNALKLLVVTLE-------ENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE 275 (446)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHH---------HHHHHHhcchhhhhccc
Q psy10797 426 QAMDLNK----------RKAIESAQSAADLKL---------HLVIIYTNGPARLEFGK 464 (517)
Q Consensus 426 qale~~k----------kk~~E~sq~~~dLk~---------qLeel~Ek~~a~LEKLK 464 (517)
..++..+ +++.+.....+.++. .|+...+....++++++
T Consensus 276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk 333 (446)
T KOG4438|consen 276 EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLK 333 (446)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 373
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.89 E-value=44 Score=35.22 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~ 317 (517)
++|..-|.||++|+.+|.
T Consensus 82 ~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 333344444444444444
No 374
>KOG1814|consensus
Probab=83.83 E-value=0.55 Score=50.91 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=31.3
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhc-------cCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQ-------RKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~-------RKCP~C~~ 505 (517)
+.|.|.||.+..+- |+|+||..|..+.++.-- -+||.|+-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 67999999986544 999999999999987532 28876554
No 375
>PRK10698 phage shock protein PspA; Provisional
Probab=83.74 E-value=50 Score=33.00 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 338 EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNA 417 (517)
Q Consensus 338 EdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~l 417 (517)
+.+..+....-..+.+++++....+ ++-. +.....+..+|.....++..|+.+++.+...+.+|++....|..++..+
T Consensus 55 k~~er~~~~~~~~~~~~e~kA~~Al-~~G~-EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 55 KQLTRRIEQAEAQQVEWQEKAELAL-RKEK-EDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555444432 3332 3355566678888899999999999999999999999999999999887
Q ss_pred HHHHH
Q psy10797 418 EKELH 422 (517)
Q Consensus 418 EKEL~ 422 (517)
...-.
T Consensus 133 k~k~~ 137 (222)
T PRK10698 133 RARQQ 137 (222)
T ss_pred HHHHH
Confidence 76533
No 376
>KOG1899|consensus
Probab=83.67 E-value=47 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.+|..||-=|++-|.+|- ..+|+|-.|+=+.
T Consensus 139 EKIrDLE~cie~kr~kLn---atEEmLQqellsr 169 (861)
T KOG1899|consen 139 EKIRDLETCIEEKRNKLN---ATEEMLQQELLSR 169 (861)
T ss_pred hhHHHHHHHHHHHHhhhc---hHHHHHHHHHHhh
Confidence 444444444444444333 3334455555443
No 377
>KOG4787|consensus
Probab=83.62 E-value=61 Score=37.42 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHH------------HHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED------MQEQNSR------------LLQQLREKDDANF 359 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd------mQeQNqr------------klqqL~EkED~n~ 359 (517)
+..+++.++.+++.|..+.+.++.+.+-|+.-|-.|..|.+. .+..|.= ++--+.+.++.+.
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~ 409 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL 409 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Confidence 557888999999999999999999999999888887776543 2222221 1111112222111
Q ss_pred HHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 360 KLMTERIK----SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE-KERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 360 KL~aEK~K----AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE-~Er~L~~kLs~lEKEL~~lkqale 429 (517)
-+. |-.| +.|..--+|.+...-..|++.++++.+........-+- +...|+.+|..+.|+...++.-+.
T Consensus 410 ~~s-~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~ 483 (852)
T KOG4787|consen 410 ELT-TQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLN 483 (852)
T ss_pred cHH-HHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHh
Confidence 111 1111 22333344555555556666666665544443322111 223466677777776655555443
No 378
>KOG2114|consensus
Probab=82.95 E-value=1.1 Score=52.44 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=34.3
Q ss_pred hhcccccc-----cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC---CCCCceE
Q psy10797 460 LEFGKDRE-----FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA---KANDYHR 512 (517)
Q Consensus 460 LEKLKk~e-----~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~---~~~Dv~r 512 (517)
++-++.+. -+|+.|....-- |||.|=..|..+ .--+||.|.. +.+|..+
T Consensus 828 l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~----~~~~CP~C~~e~~~~m~l~~ 890 (933)
T KOG2114|consen 828 LETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLED----KEDKCPKCLPELRGVMDLKR 890 (933)
T ss_pred HHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhcc----CcccCCccchhhhhhHHHHH
Confidence 55555422 489999874332 999999999983 2359999988 6655543
No 379
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=82.86 E-value=24 Score=39.63 Aligned_cols=22 Identities=5% Similarity=0.347 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~ 319 (517)
+..++..+.++.+.|+.+++..
T Consensus 74 i~~~l~~a~~e~~~L~~eL~~~ 95 (593)
T PF06248_consen 74 IQPQLRDAAEELQELKRELEEN 95 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 380
>KOG4809|consensus
Probab=82.85 E-value=96 Score=35.59 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
.+.|..|+..+..++...-.|..++-++-.|-...+.....+=--|..+-+...|+-+.-.||...-.-+|-.++
T Consensus 344 kEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe 418 (654)
T KOG4809|consen 344 KEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPE 418 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChh
Confidence 333444444444444455555666666666666666666555555555666677777777777777666665544
No 381
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.71 E-value=17 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHL 423 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~ 423 (517)
.|+.++.+|+..++.....++..+...+.|...-..+..+|..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888777777777777666666555555555443
No 382
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=82.68 E-value=65 Score=33.57 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLRE---KDDANFKLMTERIKSNQLHK-L-AREEKDTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~E---kED~n~KL~aEK~KAdQKyf-a-amreKdaLe~Evk~Lk~QlekQ~e~I~ 401 (517)
...+..+-.-++.|..+-.+++.++.+ .||-..+|+.+.-+.+...| . ..++..-.+.-...+...+.+|..++.
T Consensus 192 v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~ 271 (342)
T cd08915 192 VSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIK 271 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555533 35555677776544321111 1 111222344445556666777888888
Q ss_pred HHHHHHHHHH
Q psy10797 402 KLEEKERFLQ 411 (517)
Q Consensus 402 kLeE~Er~L~ 411 (517)
++.+....+.
T Consensus 272 ~i~~~~~~f~ 281 (342)
T cd08915 272 EIDAANQEFS 281 (342)
T ss_pred HHHHHHHHHH
Confidence 8877665553
No 383
>KOG2264|consensus
Probab=82.63 E-value=3.1 Score=47.21 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq 349 (517)
|....|+++...||+|++.+..++.|.++|..||+..+.+++++.++|+-|+.
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 44566778888889999999999999999999999999999999999987764
No 384
>KOG1962|consensus
Probab=82.60 E-value=11 Score=38.01 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL 447 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~ 447 (517)
++..++.+.++++. ++|....+.+.+..+++++...+..++..+++..++.+..+++..
T Consensus 135 ~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 135 ENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444444333 444444444444444444444444444333333333333333333
No 385
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=82.58 E-value=68 Score=34.24 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
+|..+++-+.+.+..+..+.+....+++.++.++
T Consensus 148 ~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l 181 (390)
T PRK15136 148 PLGNANLIGREELQHARDAVASAQAQLDVAIQQY 181 (390)
T ss_pred HHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 386
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.56 E-value=40 Score=31.03 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=12.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
+.|...+..++.+..+|-.|+..+.+.-+.
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~ 48 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDE 48 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 387
>KOG4302|consensus
Probab=82.37 E-value=92 Score=36.33 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=18.1
Q ss_pred eeeeecchhhhHHHHHHhHhhhhc
Q psy10797 238 LFVSICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 238 ~~~~~~~a~~~~~al~~~l~~~~~ 261 (517)
|.-++..+++.++.|-++|.....
T Consensus 66 L~~~ia~~eael~~l~s~l~~~~~ 89 (660)
T KOG4302|consen 66 LLQEIAVIEAELNDLCSALGEPSI 89 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccc
Confidence 344667788888888888887766
No 388
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=82.18 E-value=56 Score=34.12 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|+.||-.++..|-+.-++..-.+..+++.|+.+... +.-|+.+..++..|+.. +-++.+|..|+.
T Consensus 108 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~--------------R~~r~~l~d~I~kLk~k-~P~s~kl~~Leq 172 (271)
T PF13805_consen 108 LLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPS--------------RDRRRKLQDEIAKLKYK-DPQSPKLVVLEQ 172 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH--TTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHhHHHHHHHHHHHhc-CCCChHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy10797 406 KERFLQTVLTNAEKELHLR-----NQAMDLNKRKAIESAQSAADL 445 (517)
Q Consensus 406 ~Er~L~~kLs~lEKEL~~l-----kqale~~kkk~~E~sq~~~dL 445 (517)
.-..........|.+|... ++++..+=..+.|.+.+..-|
T Consensus 173 ELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Il 217 (271)
T PF13805_consen 173 ELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAIL 217 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 389
>KOG0742|consensus
Probab=82.09 E-value=94 Score=35.00 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTH---QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 295 d~Eal~rL~~lE~Eie---eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
||+++.|-+++-.+|. --+..++..+.+++....|+..=-+-||.+|.|+
T Consensus 74 DpeaLERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~ 126 (630)
T KOG0742|consen 74 DPEALERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQL 126 (630)
T ss_pred ChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666655555554 2333344444444455555555555555554444
No 390
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.00 E-value=16 Score=40.73 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
.-|+.+-.++.++|.+++.+..+++.|..|-+++-+-=.++..|-
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445666677777888888888888888877776644444433333
No 391
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.99 E-value=1.3e+02 Score=36.39 Aligned_cols=10 Identities=30% Similarity=1.099 Sum_probs=7.9
Q ss_pred hccCCCCCCC
Q psy10797 496 RQRKCPKCNA 505 (517)
Q Consensus 496 R~RKCP~C~~ 505 (517)
....||.||.
T Consensus 500 ~~~~cplcgs 509 (1042)
T TIGR00618 500 QEEPCPLCGS 509 (1042)
T ss_pred CCCCCCCCCC
Confidence 3458999998
No 392
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.96 E-value=40 Score=30.64 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
..++..++.....|..++.++..++.++.+++.+|.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666556655555555554
No 393
>PLN02939 transferase, transferring glycosyl groups
Probab=81.86 E-value=80 Score=38.37 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E 407 (517)
+-++.+.+..|+..|+.-++..+..+...+|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETE 256 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777776666666655544
No 394
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.82 E-value=1.2e+02 Score=35.96 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhHHHH---hhcCcHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDER---KKLADEEAMRKIKQLEDQT 309 (517)
Q Consensus 274 elr~rlk~l~e~~~k~r---qklad~Eal~rL~~lE~Ei 309 (517)
+|+.+|..+++..-+.+ .+...+....+|++|..|+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~ 471 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEI 471 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHH
Confidence 44444444444433321 1233444445555555555
No 395
>KOG2817|consensus
Probab=81.71 E-value=0.85 Score=49.17 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=39.7
Q ss_pred ccccccc----ccc-c-ccc--cccccchhhHHHHHhhhc--cCCCCCCC--CCCCceEeec
Q psy10797 466 REFSAKF----VNF-R-RKS--YFFVEFLDCLRTRYETRQ--RKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~i----C~~-r-~K~--CgHvFC~~CIq~rl~tR~--RKCP~C~~--~~~Dv~rIyl 515 (517)
+.|-||| |.+ | |.- ||||-|.+-+..-...-. =|||=|-. ...|.++|||
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 5578999 665 2 222 999999999998776533 49999999 8999999986
No 396
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=81.55 E-value=65 Score=32.80 Aligned_cols=34 Identities=12% Similarity=-0.039 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSL 391 (517)
Q Consensus 358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~ 391 (517)
..+|..+++-+.+.|..+..+.+....++..++.
T Consensus 123 ~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~ 156 (327)
T TIGR02971 123 YRSLFRDGAVSASDLDSKALKLRTAEEELEEALA 156 (327)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555444444444444443
No 397
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.52 E-value=79 Score=33.74 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE-D------MQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE-d------mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy 372 (517)
+.|+.-..|.++.+...+.++....+|..-...+..-+. . ....+..+.+-+.+..+.|.+|..|..--.|++
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl 95 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKL 95 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333221111 0 011334555666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALS 390 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk 390 (517)
..+..+...|...+...+
T Consensus 96 ~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 96 NEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHhchHHHHHHHHHhhh
Confidence 777776666666555443
No 398
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.36 E-value=29 Score=31.70 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~Qlek 395 (517)
-.++|.|..-+++|+.|.+.
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s 55 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNAS 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 399
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.01 E-value=62 Score=32.16 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=43.6
Q ss_pred hhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 257 FDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIK--QLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 257 ~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~--~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
++|.--+++.......++.+..|..+...+.--.-+..+-|.+.+-. +-..-.+.|...++.++++...+..||+.|-
T Consensus 84 sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 84 SRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred HhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333323333345555556555555544333333333331111 1111223444444455555555556666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 335 QAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 335 qAyEdmQeQNqrklqqL 351 (517)
..-+..|.....++..|
T Consensus 164 ~~RK~~Q~~~~~~L~~L 180 (221)
T PF05700_consen 164 RERKRRQEEAGEELRYL 180 (221)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 66666666665555443
No 400
>KOG1001|consensus
Probab=80.84 E-value=0.54 Score=53.87 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=34.9
Q ss_pred hhcccccccccccccccccc-----cccccchhhHHHHHhhhcc-CCCCCCC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR-KCPKCNA 505 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R-KCP~C~~ 505 (517)
+.++... +-|.+|.+ ... |||.||.+|+...++...- +||.|+.
T Consensus 448 i~~l~~~-~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~ 497 (674)
T KOG1001|consen 448 IVDLSVS-HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRN 497 (674)
T ss_pred HHHHhhc-cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHH
Confidence 3444423 89999999 444 9999999999999987655 5999987
No 401
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.83 E-value=13 Score=35.57 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 406 KERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 406 ~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
.++....++..+++||...+..++..+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544444443333
No 402
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=80.76 E-value=22 Score=40.25 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIE 331 (517)
++++++..++..++.-++.+.+++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444444443
No 403
>KOG4552|consensus
Probab=80.53 E-value=67 Score=32.77 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 378 EKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 378 eKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
+-..++..+++|.+.+|+-.+.|++|+.
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk 95 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQK 95 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344556667777777777777776543
No 404
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=80.46 E-value=70 Score=32.47 Aligned_cols=17 Identities=6% Similarity=0.296 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy10797 306 EDQTHQLQKQVATHKQE 322 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe 322 (517)
+.+++.++..++..+++
T Consensus 107 ~~~i~~~~~~~~~a~~~ 123 (334)
T TIGR00998 107 QAKVESLKIKLEQAREK 123 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.36 E-value=55 Score=38.51 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=4.0
Q ss_pred cchhhhhhhh
Q psy10797 54 IESDQVRDLK 63 (517)
Q Consensus 54 ~~~~~~~~~~ 63 (517)
+|...+..|.
T Consensus 224 ~ep~~~~~ln 233 (782)
T PRK00409 224 IEPQSVVELN 233 (782)
T ss_pred EEcHHHHHHH
Confidence 3444344333
No 406
>KOG4403|consensus
Probab=80.06 E-value=19 Score=39.91 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred eecchhhhHHHHHHhHhhhhc-CCcccccccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797 241 SICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT 318 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s 318 (517)
+++.|+.-+..++.+|...++ +.+. .-|. +|+.+++++-+...- ++++...... .|+|.||.+|+.
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnv----avek~~lerkl~ea~rl~el------reg~e~e~~r--kelE~lR~~L~k 320 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNV----AVEKLDLERKLDEAPRLSEL------REGVENETSR--KELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch----hhhhhhHHHHHhhhhhhhhh------hcchhHHHHH--HHHHHHHHHHHH
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 319 HKQEEEALLN-----EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 319 ~eqe~eALls-----EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
.+.+.++-.+ -+...-|---+..-|+-.+--|-++++=...|=++||+|-++
T Consensus 321 AEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 321 AEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
No 407
>KOG1899|consensus
Probab=79.88 E-value=1.2e+02 Score=35.58 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHHHhhhHHHHhhc-CcHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10797 279 ACVVRDSKRDERKKL-ADEEAMR----KIKQLEDQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 279 lk~l~e~~~k~rqkl-ad~Eal~----rL~~lE~EieeLr~kL~s~eqe~eAL 326 (517)
|+.++--.+..|.++ +.+|.++ .+.+||.+.-+|-.++..++=..-++
T Consensus 141 IrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltal 193 (861)
T KOG1899|consen 141 IRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTAL 193 (861)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHH
Confidence 444444444444554 3444331 12344444444444444333333333
No 408
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.58 E-value=4.6 Score=34.15 Aligned_cols=25 Identities=8% Similarity=0.083 Sum_probs=20.7
Q ss_pred cccccccccccccc-------cccccchhhHH
Q psy10797 466 REFSAKFVNFRRKS-------YFFVEFLDCLR 490 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-------CgHvFC~~CIq 490 (517)
..-.|.+|+.+..+ |||+|-..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34579999998776 99999999975
No 409
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.57 E-value=52 Score=37.23 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 340 mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
.+.+...++.++...|.++.....|=-.--.+...+.++|+.++.|++.++..+....+. |+-..+++..+|+.+..
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHH
Confidence 445666666677777777776666655555566677778888888877777766554443 33344455555555555
Q ss_pred HHHHHHHHHHHHH
Q psy10797 420 ELHLRNQAMDLNK 432 (517)
Q Consensus 420 EL~~lkqale~~k 432 (517)
.|..++..+...+
T Consensus 495 HLasmNeqL~~Q~ 507 (518)
T PF10212_consen 495 HLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 410
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=79.57 E-value=76 Score=32.33 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=22.1
Q ss_pred ccceeecccCccee--eeecchhhhHHHHHHhHhhhhc
Q psy10797 226 YHCFDIFSLTSTLF--VSICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 226 ~~c~~i~~l~~~~~--~~~~~a~~~~~al~~~l~~~~~ 261 (517)
.-+-.++.|+.+-. -.+..|++++.+.++.+..+..
T Consensus 39 ~~G~~L~~ld~~~~~~~~~~~a~a~l~~a~a~~~~~~~ 76 (327)
T TIGR02971 39 QAGQVLAELDSRPERTAELDVARTQLDEAKARLAQVRA 76 (327)
T ss_pred cCCcEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777777632 3455666777777766666544
No 411
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=79.52 E-value=13 Score=30.29 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
.+|..|..++..|..+++++..+..++-.|+. .|.++....|+|+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~---~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ---AAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888899999999888888888888774 6666666666665
No 412
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.35 E-value=93 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=18.6
Q ss_pred ccceeecccCcc-eeeeecchhhhHHHHHHhHhhhhc
Q psy10797 226 YHCFDIFSLTST-LFVSICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 226 ~~c~~i~~l~~~-~~~~~~~a~~~~~al~~~l~~~~~ 261 (517)
.-.-.++.|+++ +.-.+..++++++++++++..+..
T Consensus 81 ~kGq~L~~l~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 81 KKGQVVARLFQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555543 223355556666666666655543
No 413
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.22 E-value=47 Score=34.55 Aligned_cols=22 Identities=23% Similarity=-0.050 Sum_probs=14.1
Q ss_pred eeecchhhhHHHHHHhHhhhhc
Q psy10797 240 VSICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 240 ~~~~~a~~~~~al~~~l~~~~~ 261 (517)
-.+.|-++||.+.++.-.-+..
T Consensus 41 ~~i~tE~dRV~Fik~v~~~~~t 62 (267)
T PF10234_consen 41 GDIDTEQDRVFFIKSVAEFMAT 62 (267)
T ss_pred CcCCcHHHHHHHHHHHHHHHHH
Confidence 3466777777777776555443
No 414
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=79.14 E-value=1.1e+02 Score=34.08 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 413 VLTNAEKELHLRNQAM 428 (517)
Q Consensus 413 kLs~lEKEL~~lkqal 428 (517)
+|..+..++..+.+++
T Consensus 379 ~l~~~~~~~~~le~~~ 394 (582)
T PF09731_consen 379 KLAELNSRLKALEEAL 394 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 415
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=79.03 E-value=92 Score=33.00 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
|+.+=.-+.-|+.|+. |-|.++-.-.||..+|+.+|.+.... .+....+.....|..++...-..+++
T Consensus 87 LdkLyaWEKKLY~EVK----a~E~~r~~yeKK~~~Lr~~d~kg~~~--------~kidkTra~v~~L~tri~Vaiq~v~s 154 (312)
T PF04782_consen 87 LDKLYAWEKKLYDEVK----AEEKLRIEYEKKCKQLRKQDAKGADS--------SKIDKTRASVKDLHTRIRVAIQSVDS 154 (312)
T ss_pred HHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHHHhCCccH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556888885 77888888889999999998876554 35556666777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKELHLR-NQAMDLNK 432 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL~~l-kqale~~k 432 (517)
-...|.+|.|.| |.=+|.+|-.-|... +...+-|+
T Consensus 155 iS~~I~kLRDeE--L~PQL~eLi~Gl~~MWk~M~ecHq 190 (312)
T PF04782_consen 155 ISKRIEKLRDEE--LYPQLVELIQGLMRMWKSMLECHQ 190 (312)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976 333344444444322 33334443
No 416
>PF15294 Leu_zip: Leucine zipper
Probab=78.85 E-value=72 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.422 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe 342 (517)
..|..+.+|-+.|+.++...+......+.|=..+..+..+++.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555444
No 417
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=78.83 E-value=62 Score=30.92 Aligned_cols=12 Identities=42% Similarity=0.554 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEV 332 (517)
Q Consensus 321 qe~eALlsEIEs 332 (517)
.+++.|++++-.
T Consensus 50 ~ee~rly~~~~~ 61 (152)
T PF07321_consen 50 REEERLYAEIQG 61 (152)
T ss_pred HHHHHHHHHHHH
Confidence 455556655533
No 418
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.71 E-value=15 Score=29.36 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
...+++|+..++.++.+++.|..++..+.+.+..+..+|
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666777777777777777777777666655
No 419
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=78.48 E-value=1.4 Score=38.37 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=23.5
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|-|.|=..||.+||.+| .-||.|++
T Consensus 54 CnHaFH~HCI~rWL~Tk-~~CPld~q 78 (88)
T COG5194 54 CNHAFHDHCIYRWLDTK-GVCPLDRQ 78 (88)
T ss_pred cchHHHHHHHHHHHhhC-CCCCCCCc
Confidence 99999999999999995 59999998
No 420
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=78.15 E-value=46 Score=38.44 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy10797 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHK 373 (517)
Q Consensus 294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyf 373 (517)
+.+...++-..++++|++||..+..++++.+....|+.+-+.+.+.+. .+......+.+
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~---------------------~~~~~~~~k~~ 131 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQML---------------------DKISDSRHKQL 131 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF 409 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~ 409 (517)
.+.-=....+.+.+.++....+....+.++.|..|.
T Consensus 132 LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~R~ 167 (632)
T PF14817_consen 132 LLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQRK 167 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 421
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.95 E-value=11 Score=35.59 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=32.4
Q ss_pred cccccccccccc--------cc-cccccchhhHHHHHhh--hccCCCCCCC
Q psy10797 466 REFSAKFVNFRR--------KS-YFFVEFLDCLRTRYET--RQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~--------K~-CgHvFC~~CIq~rl~t--R~RKCP~C~~ 505 (517)
.-|.|.||.+.- ++ ||-.-|+.|--.-++. -.-+||.|..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkT 129 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKT 129 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccc
Confidence 569999999843 33 9999999998777664 4569999998
No 422
>KOG4196|consensus
Probab=77.93 E-value=22 Score=33.53 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=51.6
Q ss_pred CCcccccccccHHHHHHHHHHHhhhH-----------HHHhhc-----C----cHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10797 262 LSDSASNIYGSLEFRKFACVVRDSKR-----------DERKKL-----A----DEEAMRKIKQLEDQTHQLQKQVATHKQ 321 (517)
Q Consensus 262 ~~d~~~~i~~e~elr~rlk~l~e~~~-----------k~rqkl-----a----d~Eal~rL~~lE~EieeLr~kL~s~eq 321 (517)
.+...+++-.++-+---|+++++.++ +-|+.+ | -.-+ ++-..||.+-..|+.+++.+++
T Consensus 17 ~~~~~d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv-~Qk~eLE~~k~~L~qqv~~L~~ 95 (135)
T KOG4196|consen 17 SGEGGDRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRV-QQKHELEKEKAELQQQVEKLKE 95 (135)
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666655566777776542 112221 1 0111 2234778888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 322 EEEALLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 322 e~eALlsEIEsIgqAyEdmQe 342 (517)
|++.+-.|++....-|+.++.
T Consensus 96 e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 96 ENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 988888888888888877654
No 423
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.75 E-value=76 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 353 EkED~n~KL~aEK~KAdQKyfaamreKdaLe~ 384 (517)
..+.....|.-|----.|++..+.+++|.|..
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555543
No 424
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.72 E-value=7.7 Score=34.59 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
.+...+++++++++.+++.++++++.|..||+.+..-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4567788888899999999999999999999888653
No 425
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.67 E-value=64 Score=31.55 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.++..++.|+.+++..++..+.|..+|+..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444444444
No 426
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.65 E-value=57 Score=32.53 Aligned_cols=83 Identities=28% Similarity=0.429 Sum_probs=54.2
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372 (517)
Q Consensus 293 lad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy 372 (517)
+++.|. +| ..||++.+.+...+...+...+.|..+|+...+ |- .+....+
T Consensus 100 LA~~ei-rR-~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~-------Q~---------------------~~va~~Q 149 (192)
T PF11180_consen 100 LADVEI-RR-AQLEAQKAQLERLIAESEARANRLQADLQIARQ-------QQ---------------------QQVAARQ 149 (192)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---------------------HHHHHHH
Confidence 444443 33 378888888888888888888888887754332 11 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
..++.+..+|+.|.+.++.|+++....|..|+-
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777766653
No 427
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.43 E-value=19 Score=36.97 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
.+.+..++++.+++...++.++|..|++.++.-|++.|+...++=-..+-+++...||
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445567788888888888888888888888888887776665554444444443333
No 428
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.39 E-value=63 Score=30.20 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
++-+++|.+++.....++.++++.+....+++..+...+.+....+.+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333333333333333333333
No 429
>PHA03096 p28-like protein; Provisional
Probab=77.25 E-value=1.2 Score=46.10 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=28.5
Q ss_pred cccccccccccc-------------cccccchhhHHHHHhhhc--cCCCCCCC
Q psy10797 468 FSAKFVNFRRKS-------------YFFVEFLDCLRTRYETRQ--RKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~-------------CgHvFC~~CIq~rl~tR~--RKCP~C~~ 505 (517)
-.|.+|+++... |-|.||..||..|..++. +.||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 358888875332 999999999998876653 56777776
No 430
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.22 E-value=1.7e+02 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|+...+..+.+.-..++++-+.|....+..+..|+-
T Consensus 991 ~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~Lks 1026 (1480)
T COG3096 991 QRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKS 1026 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666667777777778777777777777666654
No 431
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=77.21 E-value=25 Score=34.62 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412 (517)
Q Consensus 354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~ 412 (517)
..-..+.|..||.+-.-.+...-.+.|+|..+...|+.+++.-..+++.|-|.||.|.+
T Consensus 107 ~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 107 QQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 44444555566666655566666778888888888888888777777777777776654
No 432
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.17 E-value=9.7 Score=30.87 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
|+..+|.++..+...+...+.+.+.+..+|+.|.+-.+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666655543
No 433
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.75 E-value=25 Score=31.24 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQL--QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 299 l~rL~~lE~EieeL--r~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
.+|+..+|.+++.| +..+..++-+...+..|+..++...+.+..|..-++.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777 77777777777777788888888888877777666643
No 434
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=76.54 E-value=92 Score=31.67 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ-----EQNSRLLQQLREKDDANFKLMTERIKSNQLHK 373 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ-----eQNqrklqqL~EkED~n~KL~aEK~KAdQKyf 373 (517)
+.|..||.++..|-+.++.+-+.-..|-.=+...+++...+- ...++.+.++++.++++.-+..+-+.+|...|
T Consensus 29 ~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f 107 (234)
T cd07665 29 QEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLL 107 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666555555555433333333333334444444332 33456677777777777776666555555444
No 435
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=76.31 E-value=98 Score=31.85 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdm 340 (517)
..++.+..+++.+.+.|..-
T Consensus 148 gg~~~~~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 148 GGYQLFLKELDELEKEYEQE 167 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 45677788888888887664
No 436
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=75.70 E-value=10 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHHHHhhhHHHH--hhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 277 KFACVVRDSKRDER--KKLADEEAMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 277 ~rlk~l~e~~~k~r--qklad~Eal~rL~~lE~EieeLr~kL~s~ 319 (517)
.||++++.....++ +.+.+..+..+|+.++.|-+.|+.+|.-.
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777665 44567778899999999999999988754
No 437
>KOG4185|consensus
Probab=75.65 E-value=12 Score=37.88 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=24.2
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|||.-|..|++.-+.+-.++||.|..
T Consensus 239 c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 239 EGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHhcchHHHHHHhhhcCCcccc
Confidence 89999999999998888899999985
No 438
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.55 E-value=69 Score=31.56 Aligned_cols=34 Identities=6% Similarity=-0.118 Sum_probs=21.9
Q ss_pred CcceeeeecchhhhHHHHHHhHhhhhcCCccccc
Q psy10797 235 TSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASN 268 (517)
Q Consensus 235 ~~~~~~~~~~a~~~~~al~~~l~~~~~~~d~~~~ 268 (517)
.+..-..+.++......+...|..+.++-=++..
T Consensus 57 e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~ 90 (190)
T PF05266_consen 57 EKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKF 90 (190)
T ss_pred HHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHH
Confidence 3344456677777888888888888874433333
No 439
>PRK02119 hypothetical protein; Provisional
Probab=75.50 E-value=21 Score=30.06 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
..+|+-+.+|+.+++-.+...+.|+..|-.-.+..+.++.+...+..++.+.+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666666677777666666666677766666666666554
No 440
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=75.37 E-value=1.8 Score=33.99 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=16.1
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
||+-.|..|..+-.++-..+||.|+.
T Consensus 20 Cgf~IC~~C~~~i~~~~~g~CPgCr~ 45 (48)
T PF14570_consen 20 CGFQICRFCYHDILENEGGRCPGCRE 45 (48)
T ss_dssp TS----HHHHHHHTTSS-SB-TTT--
T ss_pred CCCcHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999999987766789999986
No 441
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=75.31 E-value=35 Score=28.67 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
.....+|++=+.|......++..+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IK 36 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIK 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444444433333333333333
No 442
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=75.24 E-value=27 Score=34.82 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=26.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 365 RIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403 (517)
Q Consensus 365 K~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kL 403 (517)
+.+.........++.+.++.||..|+.-+..-+..+++|
T Consensus 155 ~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 155 RSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556667788888888888888877665544444444
No 443
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=75.23 E-value=27 Score=37.26 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
..|.+.+.+-|+++|+-+....+.+.+..+..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ 34 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQ 34 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888887777766555555544433
No 444
>PRK00846 hypothetical protein; Provisional
Probab=75.14 E-value=21 Score=30.69 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
..++.-|.+|+.+++-.+...+.|+..|-.-.+..+.++.|...+..++.+.+..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556667777777777788888888888888888888888888888887776543
No 445
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=74.99 E-value=98 Score=31.77 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQV 386 (517)
Q Consensus 372 yfaamreKdaLe~Ev 386 (517)
|..+....+....++
T Consensus 154 ~~~a~~~~~~a~~~~ 168 (331)
T PRK03598 154 RDQAQATLKSAQDKL 168 (331)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 446
>KOG1100|consensus
Probab=74.88 E-value=13 Score=36.95 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred cccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797 470 AKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLY 514 (517)
Q Consensus 470 C~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy 514 (517)
|..|+.+... |.|+ +|..|-.. -+.||.|....+--..||
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhceeecc
Confidence 9999999888 9987 89999765 357999998444444443
No 447
>KOG2991|consensus
Probab=74.77 E-value=42 Score=35.16 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred eecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797 241 SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK 320 (517)
Q Consensus 241 ~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~e 320 (517)
++..-.+++.+++.-|+...=.||+ +.. ++|..-=+.+.++-..+..--+.-||+.||.+++--+...+.++
T Consensus 185 ele~tk~Klee~QnelsAwkFTPdS----~tG----K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElk 256 (330)
T KOG2991|consen 185 ELEQTKDKLEEAQNELSAWKFTPDS----KTG----KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELK 256 (330)
T ss_pred HHHHHHHHHHHHHhhhheeeecCCC----cch----HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
...+.|+.=|+.+-.-.|.|++-..=+-++|.+.++.+.+|--+-....|
T Consensus 257 ssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 257 SSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.51 E-value=1.4e+02 Score=32.78 Aligned_cols=22 Identities=50% Similarity=0.761 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHH----HHHHhhhhc
Q psy10797 85 ASLLIAQLRRKTE----RMKKIEQAG 106 (517)
Q Consensus 85 ~~~~~~~~~~~~~----~~~~~~~~~ 106 (517)
.+-.||||.+|.| |++.+|+.|
T Consensus 60 sa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 60 SAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667999998875 899999999
No 449
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.49 E-value=12 Score=35.88 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
..+..++|+++|+.++++++.+.++|....+.+.+.|+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44456667777777777777777777776666666553
No 450
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=74.49 E-value=1.6e+02 Score=33.50 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQLREKDDAN-FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT----------- 398 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL~EkED~n-~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e----------- 398 (517)
+.++.-|..+|+++...+..+...-+.. .....|+.|-......+-+....|+..++..+.++++--.
T Consensus 225 eElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~ 304 (531)
T PF15450_consen 225 EELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEK 304 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 4556778888899988888888877743 3345678888888888888889999998888888765321
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 -AIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 399 -~I~kLeE~Er~L~~kLs~lEK 419 (517)
..++++|.+..++..|+.+.+
T Consensus 305 ~e~sk~eeL~~~L~~~lea~q~ 326 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEAMQL 326 (531)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 234455555555555544433
No 451
>PRK04406 hypothetical protein; Provisional
Probab=74.29 E-value=23 Score=30.04 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
.+|.-+.+|+.+++-.+...+.|+..|-.-.+..+.++.+.+.+..++.+.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566666666666666666666666666666666666666666665544
No 452
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=74.29 E-value=1.2e+02 Score=31.74 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT-------HKQEEEALLNEMEVTGQAFEDMQEQNSR 346 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s-------~eqe~eALlsEIEsIgqAyEdmQeQNqr 346 (517)
.++..+..+.+.....+..+ .++.+.|..-+.+.+.+|.+... ...-...|..++..+..+.++...-...
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l--~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~ 151 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELL--QECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNE 151 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45556666666666655556 56778887777888899998864 5566788999999999999998888888
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 347 LLQQLREKDDANFKL 361 (517)
Q Consensus 347 klqqL~EkED~n~KL 361 (517)
+...+...++.+.-|
T Consensus 152 l~~~~~~~~~~l~lL 166 (342)
T cd08915 152 VLQCYESIDPNLVLL 166 (342)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777776644333
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.24 E-value=86 Score=36.92 Aligned_cols=21 Identities=10% Similarity=0.291 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy10797 367 KSNQLHKLAREEKDTLREQVQ 387 (517)
Q Consensus 367 KAdQKyfaamreKdaLe~Evk 387 (517)
+|++.+..++++-+.+..+++
T Consensus 569 ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 569 EAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444433
No 454
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=74.05 E-value=1.2e+02 Score=31.64 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 432 KRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 432 kkk~~E~sq~~~dLk~qLe 450 (517)
+..+.++......|+.+++
T Consensus 199 re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333
No 455
>KOG3990|consensus
Probab=73.68 E-value=19 Score=37.43 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe 322 (517)
|-.=.|..+++||+.|+..|..+.+.
T Consensus 222 dh~V~i~~lkeeia~Lkk~L~qkdq~ 247 (305)
T KOG3990|consen 222 DHMVKIQKLKEEIARLKKLLHQKDQL 247 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34478889999999999988877665
No 456
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=73.52 E-value=66 Score=32.66 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 335 QAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 335 qAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
++|++++.... +-+=.++|......-.+--+-+.. ...+.+.|+.+++.|+...+.....+.++.-....+...+
T Consensus 31 ~~~~~L~~~Gk--iLeg~~Ld~aL~~~~~~~~~~~~~---~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 31 QAFEELQKSGK--ILEGEALDEALKTISAFSPKLLEL---EEEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHcCC--cCCHHHHHHHHHHcccccCCcccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcch
Q psy10797 415 TNAEKELHLRNQAMDLNKRKAI-ESAQSAADLKLHLVIIYTNGP 457 (517)
Q Consensus 415 s~lEKEL~~lkqale~~kkk~~-E~sq~~~dLk~qLeel~Ek~~ 457 (517)
..++.........+....+.+. +..+....++.=+..+.+.+.
T Consensus 106 ~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~ 149 (256)
T PF14932_consen 106 SELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLAS 149 (256)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=73.51 E-value=78 Score=29.41 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF 409 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~ 409 (517)
|..+.+...+- +.+++.++.+|..||..--|.. +.+=..+++|+.|.....+.|..|++.-|+
T Consensus 5 l~kLkE~He~e---v~glq~K~~~L~~erc~Daqrl-------eel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 5 LNKLKEIHEKE---VQGLQNKLLELKKERCLDAQRL-------EELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhHHHcccHHHH-------HHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444433 3456778899999988765543 344557788888888888889999887655
No 458
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.20 E-value=82 Score=29.49 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
...-..+.|.-.+..+++++-.....++.++...++...+..++..|.......-....+.++.++..+...+
T Consensus 89 ~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~ 161 (218)
T cd07596 89 VKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESAL 161 (218)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Confidence 3445556777788888888888888888888888888777766555554332212223334444444444333
No 459
>KOG2685|consensus
Probab=73.20 E-value=1.6e+02 Score=32.73 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359 (517)
Q Consensus 324 eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~ 359 (517)
-|+.+=|..+..|+.+++.|..+.++++.+.|..+.
T Consensus 274 ~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~ 309 (421)
T KOG2685|consen 274 LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIE 309 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345555566666666666666666666666655443
No 460
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.11 E-value=40 Score=27.75 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
.+.|+.+..|++..+..+-.....++..+...+.|..++..+++++
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444443333333333333444444444444444
No 461
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.07 E-value=1e+02 Score=32.59 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=50.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 314 KQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 314 ~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
..++.+..+-.+|.=+|+.+-.-.++++++...+-.++.++ +++ +....+..+.|..++..|+.++
T Consensus 98 v~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK-----------~~e---lEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 98 VSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK-----------IRE---LERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33557888889999999999999999999888777665322 221 2333455566666666666666
Q ss_pred HHHHHHHHH
Q psy10797 394 EAMHTAIRK 402 (517)
Q Consensus 394 ekQ~e~I~k 402 (517)
....+.|.+
T Consensus 164 ~~rdeli~k 172 (302)
T PF09738_consen 164 KQRDELIEK 172 (302)
T ss_pred HHHHHHHHH
Confidence 555555544
No 462
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.06 E-value=66 Score=33.97 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=50.1
Q ss_pred CcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHH-----HHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 263 SDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAM-----RKIK-----QLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 263 ~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal-----~rL~-----~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
|++-+++-.--+-+.-|+.++.+++.-..++-+-|.. .+|. =.|+|-.+.+++|+-+++. .||..
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEAR-----kEIkQ 128 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEAR-----KEIKQ 128 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 5555555444333444555555555555555333322 2222 2456666777777777776 77877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797 333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374 (517)
Q Consensus 333 IgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa 374 (517)
+-|+.|-|..- .+||=|--||||.
T Consensus 129 LkQvieTmrss------------------L~ekDkGiQKYFv 152 (305)
T PF15290_consen 129 LKQVIETMRSS------------------LAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHhh------------------hchhhhhHHHHHh
Confidence 77777776542 2355566688886
No 463
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.05 E-value=78 Score=29.19 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 384 ~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
..+..|+.+++.....+..++..++.+..++
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 464
>PTZ00121 MAEBL; Provisional
Probab=72.91 E-value=2.9e+02 Score=35.63 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.0
Q ss_pred cccchhHHH
Q psy10797 76 NHLNQTFCV 84 (517)
Q Consensus 76 ~~~~~~~~~ 84 (517)
+..|+.||+
T Consensus 876 ~d~n~p~Cf 884 (2084)
T PTZ00121 876 EDKKKPNCQ 884 (2084)
T ss_pred cccCCCccc
Confidence 344444443
No 465
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.82 E-value=2.2e+02 Score=34.29 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
.+|+.++|++-..-|.++...+.+...|+.=+-++...|+.-.+..+.+.+++.+
T Consensus 990 r~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d 1044 (1480)
T COG3096 990 RQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQD 1044 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3788888888888888888888888888777777777777666666666665554
No 466
>PRK00736 hypothetical protein; Provisional
Probab=72.76 E-value=21 Score=29.55 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
+..|.+|+.+++-.+...+.|+..|-.-.+..+.++.+.+.+..++.+.++
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666666666677777777777776666677777776666666666543
No 467
>KOG0104|consensus
Probab=72.43 E-value=1.6e+02 Score=35.15 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 271 GSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 271 ~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
.+..++++...++....+++.+-..+++..+| |.=+-+++.+++ +..+|-+.|..++..++.++++--.|
T Consensus 635 ~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~L---E~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~ 711 (902)
T KOG0104|consen 635 NENALDAAVAKLEDFVQKEKEKSEREEASNEL---EAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQ 711 (902)
T ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34578888888888888888887777776655 445566777766 55688889999999999988874433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHH
Q psy10797 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK------LEEKER-FLQTVLTN 416 (517)
Q Consensus 344 NqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k------LeE~Er-~L~~kLs~ 416 (517)
.-.. . .+|...+|- +--+..++-.++......++..+...++..-..+.. .+|... .....+..
T Consensus 712 ~~t~--~---~~ek~a~L~----~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~ 782 (902)
T KOG0104|consen 712 TPTE--M---LTEKLAELK----KLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDT 782 (902)
T ss_pred cchh--H---HHHHHHHHH----HHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHH
Confidence 3222 1 233333321 011222233334444445555555555554444333 334443 23346666
Q ss_pred HHHHHH
Q psy10797 417 AEKELH 422 (517)
Q Consensus 417 lEKEL~ 422 (517)
++|.+.
T Consensus 783 L~k~i~ 788 (902)
T KOG0104|consen 783 LEKVIA 788 (902)
T ss_pred HHHHHH
Confidence 666654
No 468
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.34 E-value=84 Score=29.29 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy10797 299 MRKIKQLEDQTHQLQKQV-----ATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHK 373 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL-----~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyf 373 (517)
....+.+.+++.++..++ ..+.+....+..|++.+..+-..........-.++...+..+.+|-.|
T Consensus 7 ~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E--------- 77 (136)
T PF04871_consen 7 LEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE--------- 77 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L 410 (517)
.+..+..+.--|=..+.-+.+++.+.+...+.|
T Consensus 78 ----~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 78 ----ARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred ----HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 469
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=72.25 E-value=1.3e+02 Score=31.54 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFEDMQEQNSRLLQQLRE---KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 326 LlsEIEsIgqAyEdmQeQNqrklqqL~E---kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k 402 (517)
...+|+.+-.-.+.|..+-.+++.++++ .||-..+|+.+.-..-+..|.. +..-.+.-...+...+.+|..++..
T Consensus 189 ~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~--eL~k~~~~~~~l~~~~~~Q~~ll~~ 266 (337)
T cd09234 189 IEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTTGGDMEDLFKE--ELKKHDQLVNLIEQNLAAQENILKA 266 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhcchhHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3555555666666677777777777643 3555567776653211122211 2222444444555566777777777
Q ss_pred HHHHHHHH
Q psy10797 403 LEEKERFL 410 (517)
Q Consensus 403 LeE~Er~L 410 (517)
+.+....+
T Consensus 267 i~~an~~f 274 (337)
T cd09234 267 LTEANAKY 274 (337)
T ss_pred HHHHHHHH
Confidence 77665544
No 470
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.23 E-value=96 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEA 395 (517)
Q Consensus 381 aLe~Evk~Lk~Qlek 395 (517)
..+.+.+.|..+++.
T Consensus 86 ~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQ 100 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 471
>PRK10722 hypothetical protein; Provisional
Probab=72.03 E-value=17 Score=37.38 Aligned_cols=89 Identities=22% Similarity=0.275 Sum_probs=55.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
.+-|.-++.+..-....=.-+--+-+.|.+ ..-..+.|..|+.+-.-.+...-.+.|.+..+.+.|
T Consensus 123 ~err~~l~rl~~~~~~~p~~lrPL~qlwr~--------------~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~L 188 (247)
T PRK10722 123 AERRQIVERLNAYSLQIPAQVRPLYQLWRD--------------GQALQLALAEERQRYQKLQQSSDSELDALRQQQQRL 188 (247)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHH--------------hhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344444444444333334455556666665 333334444555433223333367888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 390 SLQIEAMHTAIRKLEEKERFLQT 412 (517)
Q Consensus 390 k~QlekQ~e~I~kLeE~Er~L~~ 412 (517)
+.+++.-+.+++.|.|.||.|.+
T Consensus 189 q~~L~~t~rKLEnLTdIERqLSs 211 (247)
T PRK10722 189 QYQLELTTRKLENLTDIERQLSS 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888888764
No 472
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.99 E-value=42 Score=37.07 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=11.1
Q ss_pred eeccccceeecccCcceeeee
Q psy10797 222 TIFVYHCFDIFSLTSTLFVSI 242 (517)
Q Consensus 222 ~~~~~~c~~i~~l~~~~~~~~ 242 (517)
|.....++|...-+..|.|+.
T Consensus 27 ~~i~i~~lp~~ld~~Slrv~~ 47 (525)
T TIGR02231 27 NELVLKNLPLTLQDDSLRVSG 47 (525)
T ss_pred eEEEEeCCCCccCcCcEEEEe
Confidence 444445555545556666653
No 473
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=71.96 E-value=1.7e+02 Score=32.67 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=7.5
Q ss_pred HhhhhcCCCCCCCCCcccc
Q psy10797 101 KIEQAGTLDETTPWDSSFG 119 (517)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (517)
.++..-..-....|+..-|
T Consensus 150 ~v~~~~~~~~~~~~~~~~~ 168 (582)
T PF09731_consen 150 AVEEHSESLKEASDDAEKS 168 (582)
T ss_pred hhhhccccccccccccccc
Confidence 3333333333344444333
No 474
>PRK00295 hypothetical protein; Provisional
Probab=71.94 E-value=28 Score=28.86 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
+|+.|.+|+.+++-.+...+.|+..|-.-.+..+.++.+.+.+..++.+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666666666666666666666666666666666554
No 475
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=71.88 E-value=8.8 Score=40.81 Aligned_cols=127 Identities=9% Similarity=0.127 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
..-+..+++.++-.|+.+.+.+++........+.+++.....+...-. ...-+...+...++.++..++....
T Consensus 26 s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~-------~~~s~L~sLsstV~~lq~Sl~~lss 98 (326)
T PF04582_consen 26 SPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLA-------DMTSELNSLSSTVTSLQSSLSSLSS 98 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777777777777777777776666666666555532211 1233444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452 (517)
Q Consensus 399 ~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel 452 (517)
-|..+...-......|+++...+..+.-.+...|.-+...+-...+|+.+++.+
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 554444433333334444444444444444444444444445556666666543
No 476
>KOG4571|consensus
Probab=71.75 E-value=28 Score=36.60 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred hhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 284 e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
-+..+||+|- ...-++++.|++.|.++++.++...+.+-.||.-+-|++.++.
T Consensus 237 ~AAtRYRqKk-----Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 237 AAATRYRQKK-----RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665553 1223355566666666666677777777777777777776654
No 477
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=71.58 E-value=1.2e+02 Score=30.55 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT------HKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s------~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
.++..+.++.+...+.+..+ .++.+.|..-+.+-+.+|.++.. ...-...|..+|..+..+.+....-+...
T Consensus 26 ~l~~~l~~l~~~~~~~~~~L--~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 26 KLEESLQELPELSQEVRSIL--DEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333444443333333333 33334444444444445554421 22333455555555555555555544444
Q ss_pred HHHHHHHHHH
Q psy10797 348 LQQLREKDDA 357 (517)
Q Consensus 348 lqqL~EkED~ 357 (517)
...+...+..
T Consensus 104 ~~~~~~~~~~ 113 (296)
T PF13949_consen 104 RSKLESIEEN 113 (296)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 478
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.28 E-value=22 Score=37.45 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 275 FRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354 (517)
Q Consensus 275 lr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~Ek 354 (517)
++.++.++++.+...+..+ .+...+++.++.+++.|+.+++...++-+.|..+++.+..=.+.......-|-.+-..+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L--~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQL--AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Q ss_pred HHHHHHHHHHh
Q psy10797 355 DDANFKLMTER 365 (517)
Q Consensus 355 ED~n~KL~aEK 365 (517)
.+....+....
T Consensus 297 ~~~~~~l~~~~ 307 (344)
T PF12777_consen 297 SEQIEELEEQL 307 (344)
T ss_dssp HCHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 479
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=71.02 E-value=78 Score=28.33 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=41.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
..|+..+..-.+...+|+.|+|.=-.|-... -++.. -..-.+.++|.+++.|.++.
T Consensus 2 ~~Lr~~v~~er~~~~~L~~ELEeER~AaAsA-------------A~EAM-----------aMI~RLQ~EKAa~~mEA~Qy 57 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALYAELEEERSAAASA-------------ASEAM-----------AMILRLQEEKAAVEMEARQY 57 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-----------HHHHHHHHhHHHHHHHHHHH
Confidence 4677778888888888888886433332221 11111 13345678888888888888
Q ss_pred HHHHHHHHH
Q psy10797 390 SLQIEAMHT 398 (517)
Q Consensus 390 k~QlekQ~e 398 (517)
+...+.+..
T Consensus 58 ~Rm~EEk~~ 66 (94)
T PF04576_consen 58 QRMAEEKAE 66 (94)
T ss_pred HHHHHHHHh
Confidence 887765543
No 480
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.02 E-value=24 Score=29.08 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
+|+-|.+|+.+++-.+...+.|+..|-.-.+-.+.++.+...+..++.+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555566666666666666666555556666666655555555544
No 481
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.94 E-value=61 Score=27.10 Aligned_cols=12 Identities=33% Similarity=0.185 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy10797 350 QLREKDDANFKL 361 (517)
Q Consensus 350 qL~EkED~n~KL 361 (517)
++....++...|
T Consensus 46 ~~~~~~~~~~~l 57 (123)
T PF02050_consen 46 QLRNYQRYISAL 57 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 482
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.69 E-value=1.2e+02 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
...+.++.+.|.++++..+...+.+..
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~ 159 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRS 159 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455666667777776666666655544
No 483
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.57 E-value=30 Score=28.99 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
+|+-|.+|+.+++-.+...+.|+..|-.-.+..+.++.+.+.+..++.+.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555555555556666666666666666666666666666666666544
No 484
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.52 E-value=74 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
++..+.+-++.+..+-+.+-.++.|.++..
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~ 36 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKAL 36 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 485
>KOG1952|consensus
Probab=70.29 E-value=2.5 Score=49.63 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=38.4
Q ss_pred hhhcccccccccccccccccc---------cccccchhhHHHHHhhhc------cCCCCCCC
Q psy10797 459 RLEFGKDREFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQ------RKCPKCNA 505 (517)
Q Consensus 459 ~LEKLKk~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~------RKCP~C~~ 505 (517)
.+|.+..+.|.|.||.++.+- |+|||=..||++|-.++. -+||.|..
T Consensus 183 li~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 183 LIEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HHHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 456666578999999998766 999999999999976533 37999985
No 486
>PRK04325 hypothetical protein; Provisional
Probab=70.17 E-value=31 Score=29.03 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
+++.|.+|+.+++-.+...+.|+..|-.-.+..+.++.+.+.+..++.+.+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444566666666666666667776666666666666666666666665544
No 487
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=70.09 E-value=1.2e+02 Score=30.00 Aligned_cols=202 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhHHHHHHhHhhhhc-CCcccccccccHHHHHH-HHHHHhhhHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797 247 FQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKF-ACVVRDSKRDERKKLADEE--AMRKIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 247 ~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~r-lk~l~e~~~k~rqklad~E--al~rL~~lE~EieeLr~kL~s~eqe 322 (517)
|+++.|...++.=-. ..+..+.+.-.++++.. -+.+...-.++..+....+ ...-......=+.+....-....+-
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~ 84 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI 84 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 323 EEALLNEM-EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401 (517)
Q Consensus 323 ~eALlsEI-EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~ 401 (517)
.+.|..+| +.+....+++.....+...+.........+...+-.|+..+|..+-++.+...................++
T Consensus 85 a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~e 164 (251)
T cd07653 85 AENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVE 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q psy10797 402 KLEEKERFLQTVLTNAEKELHLRNQAMDLNKR-----KAIESAQSAADLKLH 448 (517)
Q Consensus 402 kLeE~Er~L~~kLs~lEKEL~~lkqale~~kk-----k~~E~sq~~~dLk~q 448 (517)
+++..-..-......++++-...=.....+++ .+-.+-...+++..+
T Consensus 165 K~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ 216 (251)
T cd07653 165 KAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEK 216 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
No 488
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=70.09 E-value=2.1e+02 Score=32.95 Aligned_cols=136 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~ 384 (517)
+++=.++|..+|..++..+ +..|-..+..++.+.+....-+.++.+.|.....- +.......++.+.++.
T Consensus 3 ad~~~~~L~~eL~~le~~n---i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y-------~~~L~~~~~di~~IE~ 72 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN---IHSLLESEKQVNSLMEYLDEALAECDELESWLSLY-------DVELNSVRDDIEYIES 72 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQ-----------------TVLTNAEKELHLRNQAMDL----------NKRKAIE 437 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~-----------------~kLs~lEKEL~~lkqale~----------~kkk~~E 437 (517)
+.+.|+.+...+......|++.-..+. ..|..+|..+..+..++.. .-..+..
T Consensus 73 qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~A 152 (701)
T PF09763_consen 73 QNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRA 152 (701)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy10797 438 SAQSAADLKLHLV 450 (517)
Q Consensus 438 ~sq~~~dLk~qLe 450 (517)
..++.+.+.....
T Consensus 153 v~er~~~~~~~~~ 165 (701)
T PF09763_consen 153 VKERREEYEKVSD 165 (701)
T ss_pred HHHHHHHHHHHHH
No 489
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.96 E-value=1.2e+02 Score=30.00 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT 381 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda 381 (517)
+..+|.-..-|+.-+...+.+....-..+-..-.-.+.+..+....-..+.+++++....+.-. -+.....+-.+|..
T Consensus 19 ~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G--~EdLAr~Al~~k~~ 96 (219)
T TIGR02977 19 LDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG--REDLARAALIEKQK 96 (219)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAI 436 (517)
Q Consensus 382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~ 436 (517)
.+.++..|+.+++.+...|.+|+.....|..++..+...-..+..-...-+....
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.86 E-value=1.9e+02 Score=32.24 Aligned_cols=149 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLADEEAM---RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqklad~Eal---~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq 349 (517)
.+-+..|-++++..++.+-+.+..|+. .|+.++...+.+.|.+..-..-+ .+.+.+.+-.-.++.|...+-.
T Consensus 226 ~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~-----~~a~~~~~lI~~Le~qLa~~~a 300 (434)
T PRK15178 226 SFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPK-----ETITAIYQLIAGFETQLAEAKA 300 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy10797 350 QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE------AMHTAIRKLEEKERFLQTVLTNAEKELH- 422 (517)
Q Consensus 350 qL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle------kQ~e~I~kLeE~Er~L~~kLs~lEKEL~- 422 (517)
++..+.....- .+=..-.+....++|++|+...+..+. ..+..+...++ -.++.+++
T Consensus 301 eL~~L~~~~~p-------~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~---------L~le~efAe 364 (434)
T PRK15178 301 EYAQLMVNGLD-------QNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFED---------LRLQSEIAK 364 (434)
T ss_pred HHHHHHhhcCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH---------HHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHH
Q psy10797 423 -LRNQAMDLNKRKAIESAQSA 442 (517)
Q Consensus 423 -~lkqale~~kkk~~E~sq~~ 442 (517)
.++.++.+.++.-.|+.++.
T Consensus 365 ~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 365 ARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
No 491
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=69.82 E-value=3.2 Score=32.35 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred cccccccccccc------cccccchhh---HHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS------YFFVEFLDC---LRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~------CgHvFC~~C---Iq~rl~tR~RKCP~C~~ 505 (517)
++|++...+.+. |.|+-|.+= ++...+++.-+||.|++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
No 492
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.61 E-value=1.6e+02 Score=31.38 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhhHHHHhhc-CcHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------
Q psy10797 272 SLEFRKFACVVRDSKRDERKKL-ADEEAM--------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT--------- 333 (517)
Q Consensus 272 e~elr~rlk~l~e~~~k~rqkl-ad~Eal--------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI--------- 333 (517)
|..+-..++-+++.-..-++.+ ..+|++ .++..|.+|-..|..+|+.-++.-+-|-.||++.
T Consensus 26 E~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~ 105 (305)
T PF14915_consen 26 EKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ 105 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHHHHHHHHHHH
Q psy10797 334 ----GQAFEDMQEQNSRLLQQ------------LREKDDANFKLMTERIKSNQLHKLARE----EKDTLREQVQALSLQI 393 (517)
Q Consensus 334 ----gqAyEdmQeQNqrklqq------------L~EkED~n~KL~aEK~KAdQKyfaamr----eKdaLe~Evk~Lk~Ql 393 (517)
+++=+.=.+.+-+--.+ ++...|.|--|..--.||.-|...+.- ..|+|...--.|...-
T Consensus 106 d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Q 185 (305)
T PF14915_consen 106 DHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQ 185 (305)
T ss_pred hHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10797 394 EAMHTAIRKLEEKERFLQT-----------------VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNG 456 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~-----------------kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek~ 456 (517)
...++.-.+++|.+..++. +|..++.+-.++++.++...++...-.+.+-+.+.+....-.+.
T Consensus 186 rdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 186 RDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred hhhhhc
Q psy10797 457 PARLEF 462 (517)
Q Consensus 457 ~a~LEK 462 (517)
.+.-|+
T Consensus 266 ~ae~ek 271 (305)
T PF14915_consen 266 QAESEK 271 (305)
T ss_pred HHHHHH
No 493
>PF14992 TMCO5: TMCO5 family
Probab=69.40 E-value=1.6e+02 Score=31.13 Aligned_cols=165 Identities=13% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 279 ACVVRDSKRDERKKL--ADEEAMRKIKQLEDQTHQLQKQVA-----THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 279 lk~l~e~~~k~rqkl--ad~Eal~rL~~lE~EieeLr~kL~-----s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
+..++-...+.-|++ ++-+.+++|...|..+..|...+. .-+.+.+-..+ +.-+.|+.++..--.++=..-
T Consensus 2 ~~sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~--~~~e~~l~~le~e~~~LE~~n 79 (280)
T PF14992_consen 2 LMSLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS--EERETDLQELELETAKLEKEN 79 (280)
T ss_pred cchhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh--hchHHHHHHHHhhhHHHhhhh
Q ss_pred HHH----HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 352 REK----DDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 352 ~Ek----ED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa 427 (517)
... .|--.|..---.+..--...+....+..+..++.+......|...|.++++.-........+.-..+..+++.
T Consensus 80 e~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~ 159 (280)
T PF14992_consen 80 EHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEK 159 (280)
T ss_pred HhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 428 MDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 428 le~~kkk~~E~sq~~~dLk~qLe 450 (517)
+ +++++ .+...-|..++.
T Consensus 160 L----~rmE~-ekE~~lLe~el~ 177 (280)
T PF14992_consen 160 L----RRMEE-EKEMLLLEKELS 177 (280)
T ss_pred H----HHHHH-HHHHHHHHHHHH
No 494
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=69.25 E-value=24 Score=35.39 Aligned_cols=97 Identities=6% Similarity=0.105 Sum_probs=0.0
Q ss_pred CcceeeeecchhhhHHHHHHhHhhhhc---CCcccccccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHH
Q psy10797 235 TSTLFVSICTSAFQMSFYKSRWFDFRS---LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTH 310 (517)
Q Consensus 235 ~~~~~~~~~~a~~~~~al~~~l~~~~~---~~d~~~~i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~Eie 310 (517)
+.+..+.+.--.++++..-..|..+.. ..-..+|+-.+- +++.|++.+++.+.+.+.-+..++..+.+-++|.++.
T Consensus 93 ~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~ 172 (262)
T PF14257_consen 93 ERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELS 172 (262)
T ss_pred cceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIE 331 (517)
+.|.++++++.+...|..-++
T Consensus 173 ~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 173 RVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
No 495
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.22 E-value=90 Score=28.37 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ-----IEAMH 397 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q-----lekQ~ 397 (517)
...|-.+++..-..|..++.+.+...++..-.+. .-+-...+.+|.+.+.......+.. .....
T Consensus 2 ~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~-----------q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~ 70 (121)
T PRK09343 2 AENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDL-----------ELREINKALEELEKLPDDTPIYKIVGNLLVKVDKT 70 (121)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 398 TAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQS 441 (517)
Q Consensus 398 e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~ 441 (517)
+.+..+++.-..+..++..+||+...++..+...+..+.++-+.
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.16 E-value=71 Score=32.72 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------HH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQT---------------------------------------------VL 414 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~---------------------------------------------kL 414 (517)
+.++.++..+++.++++.+.|.+||+.-...+. -|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccc
Q psy10797 415 TNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGK 464 (517)
Q Consensus 415 s~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek~~a~LEKLK 464 (517)
..+.+|=..+++-+...+..+....+....|+.+++.++.-...+.||.+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=69.14 E-value=1.2e+02 Score=33.48 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I 400 (517)
++.+.|-.||-.|-|.|.+.+.....-+..+.++=........+.. -+.-.....+.|..|..+...|-+.++..+..|
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~-~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNAS-GDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q psy10797 401 RKLEE------------KERFLQTVLTNAEKELHLRNQAMDLN------------------KRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 401 ~kLeE------------~Er~L~~kLs~lEKEL~~lkqale~~------------------kkk~~E~sq~~~dLk~qLe 450 (517)
..|.. .-..+...++.+.++|..++..+... ++-+..-.....||+..++
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~ 309 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLK 309 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q psy10797 451 IIYT 454 (517)
Q Consensus 451 el~E 454 (517)
.+.+
T Consensus 310 k~~e 313 (424)
T PF03915_consen 310 KASE 313 (424)
T ss_dssp HHHH
T ss_pred HHHH
No 498
>PF14992 TMCO5: TMCO5 family
Probab=69.08 E-value=1.6e+02 Score=31.09 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 376 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam 376 (517)
|...+...+.+.-..|=.+.+.++.....|.+||-.+.---++-.+.|.-- .++++....|-.|+.|...+-..+-
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~----~~~e~~l~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS----EERETDLQELELETAKLEKENEHLS 83 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh----hchHHHHHHHHhhhHHHhhhhHhhh
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 377 EEKDTLREQVQ-----------ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADL 445 (517)
Q Consensus 377 reKdaLe~Evk-----------~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dL 445 (517)
+....+..++. +++..+.-+...++++.+.-..+..+++.++.+.....+.-+.+-.-+.++......+
T Consensus 84 ~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 84 KSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred hhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy10797 446 KLHLV 450 (517)
Q Consensus 446 k~qLe 450 (517)
+.+.|
T Consensus 164 E~ekE 168 (280)
T PF14992_consen 164 EEEKE 168 (280)
T ss_pred HHHHH
No 499
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=68.92 E-value=1.1e+02 Score=29.37 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQV 386 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Ev 386 (517)
+.++.+-....+.+.+.+.|..+.+.+..-|+.-.+...+.-..+-+.|| --++.-..+..-.+.++.++
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed----------~~~~e~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELED----------QWRQERKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~ 431 (517)
+.|...+....+.+.++++.+..+......+...-+.+-.....+
T Consensus 106 r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ 150 (158)
T PF09744_consen 106 RQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEH 150 (158)
T ss_pred HHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=68.72 E-value=93 Score=31.59 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 276 r~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
...++.-++..+.-+ .+..++....+......-..+-.. -+.+.++|..|++.+.++-+....+..++-..-....
T Consensus 27 ~~El~~~~~L~~~Gk-iLeg~~Ld~aL~~~~~~~~~~~~~---~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~ 102 (256)
T PF14932_consen 27 EEELQAFEELQKSGK-ILEGEALDEALKTISAFSPKLLEL---EEEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLS 102 (256)
T ss_pred HHHHHHHHHHHHcCC-cCCHHHHHHHHHHcccccCCcccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403 (517)
Q Consensus 356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kL 403 (517)
....+|-....++..+...+... +..++..++.+++.....+.++
T Consensus 103 ~~~~~l~~~~~~~~~~l~~~~~~---l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 103 QELSELEGKEEEAQKKLKKAQKE---LSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Done!