Query psy10797
Match_columns 517
No_of_seqs 191 out of 318
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:45:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xeu_A Ring finger protein 4; 98.8 1.8E-09 6.2E-14 82.2 3.4 48 467-515 3-64 (64)
2 4ayc_A E3 ubiquitin-protein li 98.8 2.1E-08 7.2E-13 88.9 9.7 39 466-505 52-95 (138)
3 1g25_A CDK-activating kinase a 98.8 4.6E-09 1.6E-13 81.3 4.0 50 467-516 3-64 (65)
4 3ng2_A RNF4, snurf, ring finge 98.8 3E-09 1E-13 82.8 2.9 49 466-515 9-71 (71)
5 2ecy_A TNF receptor-associated 98.7 8.9E-09 3E-13 79.9 3.6 45 466-510 14-65 (66)
6 3lrq_A E3 ubiquitin-protein li 98.6 1.5E-08 5.3E-13 85.4 3.0 54 460-514 16-77 (100)
7 2ysl_A Tripartite motif-contai 98.6 1.4E-08 4.7E-13 79.7 2.3 46 466-511 19-73 (73)
8 1t1h_A Gspef-atpub14, armadill 98.6 2.1E-08 7.2E-13 79.9 3.3 47 466-512 7-60 (78)
9 2djb_A Polycomb group ring fin 98.6 3.2E-08 1.1E-12 78.2 3.6 50 460-511 9-66 (72)
10 2ysj_A Tripartite motif-contai 98.5 2.6E-08 8.9E-13 76.5 2.6 38 466-503 19-63 (63)
11 2ecw_A Tripartite motif-contai 98.5 4.7E-08 1.6E-12 77.9 4.2 49 466-514 18-78 (85)
12 3fl2_A E3 ubiquitin-protein li 98.5 3.4E-08 1.2E-12 85.7 3.0 40 466-505 51-95 (124)
13 2ecv_A Tripartite motif-contai 98.5 5.6E-08 1.9E-12 77.4 3.4 49 466-514 18-78 (85)
14 4ic3_A E3 ubiquitin-protein li 98.5 2.7E-08 9.4E-13 79.8 1.4 51 460-516 18-74 (74)
15 3na7_A HP0958; flagellar bioge 98.5 0.00011 3.9E-09 71.6 26.8 128 301-428 19-148 (256)
16 2egp_A Tripartite motif-contai 98.5 1.5E-08 5.3E-13 80.4 -0.4 47 466-512 11-70 (79)
17 2ct2_A Tripartite motif protei 98.5 6.4E-08 2.2E-12 78.1 2.8 48 466-513 14-74 (88)
18 1c1g_A Tropomyosin; contractIl 98.4 0.00023 7.8E-09 65.1 26.3 12 246-257 19-30 (284)
19 2ecj_A Tripartite motif-contai 98.4 7.3E-08 2.5E-12 72.2 2.5 38 466-503 14-58 (58)
20 2yur_A Retinoblastoma-binding 98.4 1.2E-07 4.1E-12 75.5 3.7 40 466-505 14-60 (74)
21 1jm7_A BRCA1, breast cancer ty 98.4 1E-07 3.6E-12 80.3 3.4 47 466-512 20-75 (112)
22 1c1g_A Tropomyosin; contractIl 98.4 0.00097 3.3E-08 60.9 29.7 11 248-258 7-17 (284)
23 2ecg_A Baculoviral IAP repeat- 98.4 9.7E-08 3.3E-12 76.5 2.6 51 460-516 19-75 (75)
24 4ap4_A E3 ubiquitin ligase RNF 98.4 1.3E-07 4.4E-12 80.9 2.9 49 466-515 71-133 (133)
25 2y43_A E3 ubiquitin-protein li 98.4 1.3E-07 4.5E-12 78.8 2.8 46 466-512 21-74 (99)
26 2f42_A STIP1 homology and U-bo 98.3 1.1E-06 3.9E-11 82.8 9.0 47 466-512 105-158 (179)
27 1rmd_A RAG1; V(D)J recombinati 98.3 1.5E-07 5E-12 80.6 2.6 46 466-511 22-74 (116)
28 4ap4_A E3 ubiquitin ligase RNF 98.3 2.1E-07 7.1E-12 79.6 3.4 50 466-516 6-69 (133)
29 3hct_A TNF receptor-associated 98.3 2.2E-07 7.4E-12 80.2 3.5 46 466-511 17-69 (118)
30 2ckl_B Ubiquitin ligase protei 98.3 1.6E-07 5.6E-12 85.1 2.7 40 466-505 53-98 (165)
31 3ztg_A E3 ubiquitin-protein li 98.3 2.8E-07 9.6E-12 75.5 3.7 40 466-505 12-58 (92)
32 2vje_B MDM4 protein; proto-onc 98.3 3E-07 1E-11 71.9 3.7 50 466-516 6-63 (63)
33 2vje_A E3 ubiquitin-protein li 98.3 3E-07 1E-11 72.1 3.6 50 466-516 7-64 (64)
34 2ckl_A Polycomb group ring fin 98.3 2.7E-07 9.1E-12 78.2 3.4 44 460-505 9-58 (108)
35 2d8t_A Dactylidin, ring finger 98.3 6.5E-08 2.2E-12 76.2 -0.4 45 466-511 14-65 (71)
36 2csy_A Zinc finger protein 183 98.3 4.1E-07 1.4E-11 73.1 3.9 39 466-505 14-57 (81)
37 1z6u_A NP95-like ring finger p 98.3 3.5E-07 1.2E-11 83.0 3.3 40 466-505 77-121 (150)
38 2ect_A Ring finger protein 126 98.3 3.2E-07 1.1E-11 73.0 2.6 44 466-510 14-67 (78)
39 2yho_A E3 ubiquitin-protein li 98.2 2.5E-07 8.6E-12 75.6 1.5 52 460-517 12-69 (79)
40 1chc_A Equine herpes virus-1 r 98.2 5.8E-07 2E-11 69.6 3.4 40 467-507 5-50 (68)
41 2ecm_A Ring finger and CHY zin 98.2 5E-07 1.7E-11 67.0 2.8 38 467-505 5-51 (55)
42 2ea6_A Ring finger protein 4; 98.2 4.6E-07 1.6E-11 69.7 2.3 39 466-505 14-64 (69)
43 3l11_A E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 80.3 -0.4 40 466-505 14-58 (115)
44 1jm7_B BARD1, BRCA1-associated 98.2 3.4E-07 1.2E-11 78.9 1.2 49 460-512 16-72 (117)
45 2ecn_A Ring finger protein 141 98.2 1.4E-07 4.7E-12 73.7 -1.3 39 466-505 14-56 (70)
46 2ep4_A Ring finger protein 24; 98.2 6.8E-07 2.3E-11 70.4 2.5 39 466-505 14-60 (74)
47 2ea5_A Cell growth regulator w 98.1 1.1E-06 3.6E-11 70.1 3.4 52 460-516 8-65 (68)
48 2kr4_A Ubiquitin conjugation f 98.1 1.1E-06 3.9E-11 72.4 3.2 46 466-512 13-65 (85)
49 2kiz_A E3 ubiquitin-protein li 98.1 1.1E-06 3.7E-11 68.3 2.9 39 466-505 13-59 (69)
50 3knv_A TNF receptor-associated 98.1 4.5E-07 1.5E-11 81.5 0.6 44 461-505 26-74 (141)
51 3hcs_A TNF receptor-associated 98.1 1.3E-06 4.4E-11 79.4 3.5 47 466-512 17-70 (170)
52 2c2l_A CHIP, carboxy terminus 98.1 3.4E-06 1.2E-10 80.4 6.3 46 466-511 207-259 (281)
53 1iym_A EL5; ring-H2 finger, ub 98.1 9.3E-07 3.2E-11 65.7 1.9 39 466-505 4-51 (55)
54 1x4j_A Ring finger protein 38; 98.0 1.4E-06 4.9E-11 69.0 2.4 39 466-505 22-68 (75)
55 2kre_A Ubiquitin conjugation f 98.0 1.8E-06 6.1E-11 73.7 3.1 46 466-512 28-80 (100)
56 2l0b_A E3 ubiquitin-protein li 98.0 1.4E-06 4.9E-11 72.1 2.1 39 466-505 39-85 (91)
57 1i84_S Smooth muscle myosin he 98.0 2E-05 6.8E-10 91.5 12.0 118 274-393 861-978 (1184)
58 2y1n_A E3 ubiquitin-protein li 98.0 2.4E-06 8E-11 89.2 3.4 46 468-513 333-383 (389)
59 1i84_S Smooth muscle myosin he 98.0 1E-05 3.5E-10 93.8 9.0 91 300-390 913-1003(1184)
60 1wgm_A Ubiquitin conjugation f 98.0 3.5E-06 1.2E-10 71.6 3.4 46 466-512 21-74 (98)
61 1e4u_A Transcriptional repress 98.0 3.9E-06 1.3E-10 68.7 3.5 40 466-505 10-58 (78)
62 1bor_A Transcription factor PM 97.9 1.7E-06 6E-11 65.7 0.9 36 466-505 5-45 (56)
63 1v87_A Deltex protein 2; ring- 97.9 4E-06 1.4E-10 71.1 2.5 40 466-505 24-90 (114)
64 3t6p_A Baculoviral IAP repeat- 97.9 2.3E-06 7.9E-11 87.7 1.0 51 460-516 289-345 (345)
65 3htk_C E3 SUMO-protein ligase 97.9 2.4E-05 8.1E-10 78.1 7.6 46 466-511 180-236 (267)
66 2yu4_A E3 SUMO-protein ligase 97.8 1.1E-05 3.8E-10 67.4 3.2 40 466-505 6-58 (94)
67 3na7_A HP0958; flagellar bioge 97.7 0.014 4.8E-07 56.8 23.6 134 298-431 9-144 (256)
68 2dfs_A Myosin-5A; myosin-V, in 97.6 0.0012 4.2E-08 76.4 17.8 121 302-432 923-1043(1080)
69 2ecl_A Ring-box protein 2; RNF 97.5 1.5E-05 5.2E-10 64.8 0.7 25 480-505 48-72 (81)
70 2dfs_A Myosin-5A; myosin-V, in 97.5 0.0037 1.3E-07 72.5 19.3 117 300-426 935-1051(1080)
71 2bay_A PRE-mRNA splicing facto 97.5 5.8E-05 2E-09 59.1 2.9 49 467-516 3-59 (61)
72 1wim_A KIAA0161 protein; ring 97.4 4.7E-05 1.6E-09 63.0 2.3 40 466-505 4-60 (94)
73 3vk6_A E3 ubiquitin-protein li 97.4 7.2E-05 2.5E-09 65.0 2.9 45 470-514 4-54 (101)
74 3vkg_A Dynein heavy chain, cyt 97.4 0.02 6.8E-07 72.9 25.2 137 297-436 1931-2073(3245)
75 2v71_A Nuclear distribution pr 97.3 0.081 2.8E-06 50.5 23.4 93 300-405 24-116 (189)
76 3oja_B Anopheles plasmodium-re 97.2 0.0041 1.4E-07 65.6 14.5 38 415-452 540-577 (597)
77 3o0z_A RHO-associated protein 97.0 0.11 3.6E-06 48.9 20.4 121 274-422 10-135 (168)
78 2v71_A Nuclear distribution pr 96.9 0.032 1.1E-06 53.2 16.5 109 304-415 46-154 (189)
79 3vkg_A Dynein heavy chain, cyt 96.9 0.085 2.9E-06 67.3 24.5 88 328-422 2014-2101(3245)
80 3dpl_R Ring-box protein 1; ubi 96.9 0.00037 1.3E-08 60.2 2.5 25 480-505 73-97 (106)
81 4a0k_B E3 ubiquitin-protein li 96.8 0.00018 6.1E-09 63.5 0.0 25 480-505 84-108 (117)
82 2ocy_A RAB guanine nucleotide 96.7 0.27 9.2E-06 45.6 19.8 118 299-427 12-130 (154)
83 3o0z_A RHO-associated protein 96.6 0.076 2.6E-06 49.9 15.8 141 245-391 4-150 (168)
84 2fxo_A Myosin heavy chain, car 96.2 0.42 1.4E-05 42.3 17.9 110 301-424 14-123 (129)
85 2d8s_A Cellular modulator of i 96.0 0.0031 1.1E-07 51.8 2.8 40 466-505 14-66 (80)
86 4gkw_A Spindle assembly abnorm 96.0 0.93 3.2E-05 41.4 22.2 136 309-455 13-155 (167)
87 2ocy_A RAB guanine nucleotide 96.0 0.07 2.4E-06 49.5 11.8 133 237-405 3-136 (154)
88 3q8t_A Beclin-1; autophagy, AT 95.9 0.3 1E-05 41.7 14.6 87 310-396 7-93 (96)
89 2eqb_B RAB guanine nucleotide 95.7 0.25 8.7E-06 42.6 13.3 70 333-402 3-73 (97)
90 3ol1_A Vimentin; structural ge 95.5 0.6 2.1E-05 41.0 15.6 40 304-343 17-56 (119)
91 3s84_A Apolipoprotein A-IV; fo 95.4 2.4 8.1E-05 42.1 21.1 19 275-293 42-60 (273)
92 2ct0_A Non-SMC element 1 homol 95.3 0.0093 3.2E-07 48.7 2.9 38 468-505 16-60 (74)
93 2efr_A General control protein 95.2 2 6.7E-05 39.8 23.9 57 305-361 26-82 (155)
94 2efr_A General control protein 95.0 2.2 7.6E-05 39.5 19.4 73 319-398 47-119 (155)
95 3ghg_A Fibrinogen alpha chain; 94.6 0.91 3.1E-05 49.2 16.6 32 374-405 121-152 (562)
96 2jee_A YIIU; FTSZ, septum, coi 94.5 0.45 1.5E-05 39.9 11.2 65 298-362 11-75 (81)
97 3tnu_B Keratin, type II cytosk 94.5 0.45 1.5E-05 42.1 11.8 90 301-393 37-126 (129)
98 1f5n_A Interferon-induced guan 94.5 3.1 0.00011 45.5 20.7 18 323-340 433-450 (592)
99 3u1c_A Tropomyosin alpha-1 cha 94.3 1.9 6.5E-05 36.8 15.0 80 371-450 10-89 (101)
100 1joc_A EEA1, early endosomal a 94.2 0.33 1.1E-05 42.9 10.3 36 468-503 70-119 (125)
101 3oja_A Leucine-rich immune mol 94.2 0.49 1.7E-05 49.0 13.2 40 375-414 447-486 (487)
102 3tnu_A Keratin, type I cytoske 94.1 0.75 2.6E-05 40.8 12.5 89 302-393 40-128 (131)
103 3iyk_A VP5; icosahedral virus; 93.2 2.9 9.8E-05 45.1 17.0 118 255-377 77-195 (526)
104 3ghg_A Fibrinogen alpha chain; 93.1 3.8 0.00013 44.5 17.8 24 407-430 133-156 (562)
105 2b9c_A Striated-muscle alpha t 92.9 5.2 0.00018 36.5 16.1 111 278-411 4-114 (147)
106 3swk_A Vimentin; cytoskeleton, 92.4 1.2 3.9E-05 37.3 10.3 33 308-340 1-33 (86)
107 2b9c_A Striated-muscle alpha t 92.3 0.67 2.3E-05 42.4 9.5 119 238-358 8-138 (147)
108 2fxo_A Myosin heavy chain, car 92.3 5.6 0.00019 35.0 18.1 37 329-365 14-50 (129)
109 3u59_A Tropomyosin beta chain; 92.1 5 0.00017 34.0 14.2 56 373-428 12-67 (101)
110 1deq_A Fibrinogen (alpha chain 92.1 5.9 0.0002 41.4 17.2 22 385-406 135-156 (390)
111 2i1j_A Moesin; FERM, coiled-co 92.0 0.63 2.1E-05 50.6 10.4 53 270-324 300-352 (575)
112 3oja_A Leucine-rich immune mol 91.6 4.3 0.00015 41.9 15.8 36 389-424 433-468 (487)
113 2e7s_A RAB guanine nucleotide 91.5 1.2 4.1E-05 40.5 10.1 55 348-402 38-93 (135)
114 2eqb_B RAB guanine nucleotide 91.5 6.3 0.00021 34.0 14.2 27 368-394 67-93 (97)
115 3cve_A Homer protein homolog 1 91.5 2 6.9E-05 35.2 10.4 67 297-363 4-70 (72)
116 3hnw_A Uncharacterized protein 91.3 2.2 7.6E-05 38.5 11.6 8 306-313 38-45 (138)
117 2b5u_A Colicin E3; high resolu 90.9 20 0.00069 38.8 20.2 26 266-291 287-312 (551)
118 3hnw_A Uncharacterized protein 90.9 3.3 0.00011 37.4 12.3 60 302-361 70-129 (138)
119 2v66_B Nuclear distribution pr 90.4 8.8 0.0003 33.8 16.8 46 375-420 33-85 (111)
120 3cvf_A Homer-3, homer protein 90.3 1.6 5.5E-05 36.4 9.0 68 296-363 9-76 (79)
121 3mq9_A Bone marrow stromal ant 90.2 8.5 0.00029 39.5 16.4 56 332-398 370-425 (471)
122 3ol1_A Vimentin; structural ge 90.0 3.1 0.00011 36.4 11.1 64 274-339 38-108 (119)
123 3a7p_A Autophagy protein 16; c 89.8 3.9 0.00013 37.8 12.0 51 300-350 82-132 (152)
124 3cvf_A Homer-3, homer protein 89.7 3.5 0.00012 34.3 10.4 70 360-429 3-72 (79)
125 1f5n_A Interferon-induced guan 89.1 15 0.00051 40.1 18.0 23 279-301 437-463 (592)
126 2v4h_A NF-kappa-B essential mo 88.8 2.8 9.5E-05 36.9 9.7 71 274-346 28-108 (110)
127 3u1c_A Tropomyosin alpha-1 cha 88.7 10 0.00035 32.2 15.1 38 298-335 21-58 (101)
128 3iox_A AGI/II, PA; alpha helix 88.4 12 0.00041 40.3 16.2 34 321-354 9-42 (497)
129 1deq_A Fibrinogen (alpha chain 88.3 10 0.00036 39.6 15.1 91 321-421 67-157 (390)
130 3nmd_A CGMP dependent protein 87.8 1.7 5.7E-05 35.8 7.2 55 328-397 13-67 (72)
131 3tnu_B Keratin, type II cytosk 87.6 14 0.00047 32.4 13.8 59 374-432 40-102 (129)
132 3haj_A Human pacsin2 F-BAR; pa 87.1 24 0.00082 37.0 17.5 27 362-388 149-175 (486)
133 1ic2_A Tropomyosin alpha chain 87.0 4.9 0.00017 32.8 9.7 65 371-435 7-71 (81)
134 3r6n_A Desmoplakin; spectrin r 86.9 34 0.0012 36.1 25.5 23 340-362 131-153 (450)
135 4gkw_A Spindle assembly abnorm 86.6 19 0.00065 32.9 22.8 71 274-346 15-85 (167)
136 2v66_B Nuclear distribution pr 86.1 17 0.00059 31.9 14.6 59 297-358 7-65 (111)
137 1m1j_B Fibrinogen beta chain; 85.8 22 0.00075 38.0 16.4 42 305-346 98-139 (464)
138 1gk4_A Vimentin; intermediate 85.8 13 0.00044 30.6 11.7 70 322-394 9-78 (84)
139 1m1j_A Fibrinogen alpha subuni 85.2 4.3 0.00015 43.5 10.5 94 243-338 61-156 (491)
140 2xs1_A Programmed cell death 6 84.4 54 0.0018 36.2 21.0 85 327-411 555-643 (704)
141 3u59_A Tropomyosin beta chain; 84.3 18 0.00061 30.6 14.6 44 296-339 19-62 (101)
142 2e7s_A RAB guanine nucleotide 84.1 2.1 7.2E-05 38.9 6.7 33 368-400 87-119 (135)
143 3fpp_A Macrolide-specific effl 83.9 3.6 0.00012 40.1 8.9 31 294-324 63-93 (341)
144 4dk0_A Putative MACA; alpha-ha 83.3 5.9 0.0002 39.0 10.2 30 294-323 64-93 (369)
145 3k1l_B Fancl; UBC, ring, RWD, 83.0 0.53 1.8E-05 49.1 2.5 39 467-505 308-369 (381)
146 4fla_A Regulation of nuclear P 82.9 6.3 0.00022 36.1 9.4 17 295-311 41-57 (152)
147 3tnu_A Keratin, type I cytoske 82.6 23 0.00078 31.2 12.7 59 374-432 42-104 (131)
148 1x8y_A Lamin A/C; structural p 82.4 8.6 0.00029 31.9 9.3 44 351-394 37-80 (86)
149 2cs3_A Protein C14ORF4, MY039 82.4 0.93 3.2E-05 38.3 3.3 40 466-505 14-66 (93)
150 3q8t_A Beclin-1; autophagy, AT 82.2 22 0.00075 30.1 13.7 75 302-376 13-87 (96)
151 2efl_A Formin-binding protein 82.1 35 0.0012 32.4 19.6 42 348-389 122-163 (305)
152 2b5u_A Colicin E3; high resolu 81.6 64 0.0022 35.0 21.0 15 408-422 405-419 (551)
153 3nw0_A Non-structural maintena 81.4 0.77 2.6E-05 44.6 2.9 39 467-505 180-225 (238)
154 2xnx_M M protein, M1-BC1; cell 81.3 7 0.00024 36.0 8.9 45 276-320 9-53 (146)
155 3qwe_A GMIP, GEM-interacting p 81.2 42 0.0014 33.5 15.4 95 320-424 100-207 (279)
156 3s4r_A Vimentin; alpha-helix, 81.2 18 0.00062 30.5 11.0 8 340-347 11-18 (93)
157 1sjj_A Actinin; 3-helix bundle 80.0 59 0.002 35.8 17.6 20 242-261 420-439 (863)
158 2z5i_A TM, general control pro 79.6 4.8 0.00016 30.8 6.2 38 296-333 8-45 (52)
159 3kbt_A Beta-I spectrin, spectr 79.6 44 0.0015 31.9 22.4 10 323-332 152-161 (326)
160 2i1j_A Moesin; FERM, coiled-co 79.5 3.8 0.00013 44.5 7.8 7 105-111 134-140 (575)
161 1m1j_C Fibrinogen gamma chain; 79.4 27 0.00091 36.7 13.8 11 418-428 104-114 (409)
162 3iox_A AGI/II, PA; alpha helix 79.3 30 0.001 37.4 14.3 33 298-330 7-39 (497)
163 2lw1_A ABC transporter ATP-bin 79.2 11 0.00037 31.2 8.8 43 298-340 27-82 (89)
164 3bas_A Myosin heavy chain, str 78.1 28 0.00097 28.8 11.7 55 301-362 15-69 (89)
165 3a7p_A Autophagy protein 16; c 77.9 21 0.00072 33.0 11.0 33 305-337 80-112 (152)
166 1jcd_A Major outer membrane li 77.5 11 0.00036 29.2 7.6 45 300-347 4-48 (52)
167 4akv_A Sorting nexin-33; trans 77.5 68 0.0023 32.9 27.9 177 227-409 94-314 (386)
168 3i00_A HIP-I, huntingtin-inter 77.4 11 0.00036 33.5 8.7 65 323-390 17-81 (120)
169 2jun_A Midline-1; B-BOX, TRIM, 77.3 0.77 2.6E-05 37.8 1.3 25 467-491 3-35 (101)
170 2efk_A CDC42-interacting prote 76.9 52 0.0018 31.3 20.5 57 333-389 100-156 (301)
171 2wt7_B Transcription factor MA 76.9 11 0.00037 32.1 8.2 41 300-340 48-88 (90)
172 2q6q_A Spindle POLE BODY compo 76.7 21 0.00072 29.2 9.4 59 343-422 4-62 (74)
173 3cve_A Homer protein homolog 1 76.7 30 0.001 28.3 10.7 61 368-428 5-65 (72)
174 2oto_A M protein; helical coil 76.2 44 0.0015 30.0 18.8 38 307-344 29-66 (155)
175 3tul_A Cell invasion protein S 76.1 19 0.00065 33.3 10.1 91 249-339 22-115 (158)
176 2a01_A Apolipoprotein A-I; fou 76.0 55 0.0019 31.4 14.1 87 304-395 74-165 (243)
177 1vyx_A ORF K3, K3RING; zinc-bi 75.5 2 6.8E-05 33.2 3.1 39 467-505 6-55 (60)
178 3dyt_A Sorting nexin-9; 3-heli 75.2 74 0.0025 32.2 27.7 140 226-369 72-256 (366)
179 1u4q_A Spectrin alpha chain, b 75.0 58 0.002 30.9 23.9 29 320-348 148-176 (322)
180 3etw_A Adhesin A; antiparallel 74.8 46 0.0016 29.6 15.3 58 296-360 5-62 (119)
181 4h22_A Leucine-rich repeat fli 74.6 43 0.0015 29.2 12.4 75 369-450 8-82 (103)
182 1ic2_A Tropomyosin alpha chain 72.6 37 0.0013 27.5 12.1 25 381-405 3-27 (81)
183 3qh9_A Liprin-beta-2; coiled-c 72.3 26 0.0009 29.3 9.2 62 337-405 14-75 (81)
184 4fla_A Regulation of nuclear P 71.6 61 0.0021 29.6 13.3 50 376-425 78-127 (152)
185 3mov_A Lamin-B1; LMNB1, B-type 71.1 15 0.0005 31.3 7.7 42 352-393 47-88 (95)
186 2k48_A Nucleoprotein; viral pr 70.8 28 0.00095 30.5 9.4 67 375-444 33-100 (107)
187 3s4r_A Vimentin; alpha-helix, 70.7 47 0.0016 27.9 11.5 30 386-415 11-40 (93)
188 3efg_A Protein SLYX homolog; x 70.1 13 0.00046 30.4 7.0 53 305-357 12-64 (78)
189 3jsv_C NF-kappa-B essential mo 69.9 35 0.0012 29.3 9.7 15 274-288 6-20 (94)
190 3mq7_A Bone marrow stromal ant 69.4 49 0.0017 29.5 10.8 87 269-355 17-112 (121)
191 4etp_A Kinesin-like protein KA 69.3 12 0.0004 38.9 8.1 57 300-356 3-59 (403)
192 1fxk_A Prefoldin; archaeal pro 68.5 46 0.0016 27.4 10.2 27 372-398 10-36 (107)
193 4dzn_A Coiled-coil peptide CC- 68.4 11 0.00036 26.2 5.0 30 308-337 3-32 (33)
194 1fxk_C Protein (prefoldin); ar 68.0 46 0.0016 28.7 10.5 39 303-341 4-42 (133)
195 3s9g_A Protein hexim1; cyclin 67.0 20 0.00067 31.2 7.6 55 270-326 37-91 (104)
196 3bas_A Myosin heavy chain, str 66.2 55 0.0019 27.1 12.2 39 379-417 16-54 (89)
197 1m1j_A Fibrinogen alpha subuni 65.4 1.4E+02 0.0049 32.0 15.3 22 384-405 132-153 (491)
198 4abx_A DNA repair protein RECN 65.4 80 0.0027 28.6 14.0 39 413-451 123-161 (175)
199 2wt7_A Proto-oncogene protein 64.4 32 0.0011 26.8 7.9 26 309-334 25-50 (63)
200 3hhm_B NISH2 P85alpha; PI3KCA, 64.1 1.4E+02 0.0047 30.8 16.3 26 315-340 141-166 (373)
201 2w83_C C-JUN-amino-terminal ki 62.4 67 0.0023 26.7 10.2 19 331-349 5-23 (77)
202 3trt_A Vimentin; cytoskeleton, 62.2 57 0.0019 25.8 10.8 51 403-453 26-76 (77)
203 1s94_A S-syntaxin; three helix 61.1 90 0.0031 28.2 11.5 30 323-352 76-105 (180)
204 1ik9_A DNA repair protein XRCC 60.9 1.2E+02 0.004 29.0 13.2 16 381-396 136-151 (213)
205 4emc_A Monopolin complex subun 60.6 55 0.0019 31.2 10.1 55 302-356 22-76 (190)
206 1yke_B RNA polymerase II holoe 60.3 50 0.0017 30.1 9.6 37 297-333 89-125 (151)
207 2f1m_A Acriflavine resistance 60.3 39 0.0013 31.8 9.2 21 295-315 55-75 (277)
208 2dq0_A Seryl-tRNA synthetase; 59.9 58 0.002 34.3 11.3 35 296-330 27-61 (455)
209 3swk_A Vimentin; cytoskeleton, 59.6 74 0.0025 26.3 12.0 52 376-430 6-60 (86)
210 1m1j_C Fibrinogen gamma chain; 59.0 39 0.0013 35.5 9.7 28 390-417 97-124 (409)
211 4h22_A Leucine-rich repeat fli 59.0 87 0.003 27.2 10.2 49 350-405 3-51 (103)
212 1x79_B RAB GTPase binding effe 59.0 94 0.0032 27.3 13.6 17 389-405 36-52 (112)
213 3qne_A Seryl-tRNA synthetase, 58.8 73 0.0025 34.2 11.9 37 294-330 27-63 (485)
214 1wle_A Seryl-tRNA synthetase; 58.6 58 0.002 34.9 11.2 17 327-343 69-85 (501)
215 3qwe_A GMIP, GEM-interacting p 58.3 1.4E+02 0.0048 29.8 13.2 60 302-361 172-231 (279)
216 2xdj_A Uncharacterized protein 58.2 79 0.0027 26.2 9.7 45 370-414 20-64 (83)
217 2xdj_A Uncharacterized protein 57.6 62 0.0021 26.9 8.8 42 311-352 24-65 (83)
218 3ghg_B Fibrinogen beta chain; 57.4 2.1E+02 0.007 30.7 16.0 17 305-321 93-109 (461)
219 2zqm_A Prefoldin beta subunit 57.3 83 0.0028 26.1 12.4 19 375-393 18-36 (117)
220 3mov_A Lamin-B1; LMNB1, B-type 57.2 35 0.0012 28.9 7.4 24 408-431 40-63 (95)
221 3cl3_D NF-kappa-B essential mo 56.9 18 0.00061 32.7 5.7 32 300-331 16-47 (130)
222 1ses_A Seryl-tRNA synthetase; 56.4 30 0.001 36.1 8.3 10 351-360 47-56 (421)
223 3r6n_A Desmoplakin; spectrin r 56.3 2E+02 0.0068 30.3 23.5 24 369-392 132-155 (450)
224 3mpx_A FYVE, rhogef and PH dom 56.0 2.4 8.1E-05 43.1 0.0 37 469-505 377-428 (434)
225 1x8y_A Lamin A/C; structural p 56.0 53 0.0018 27.1 8.2 23 409-431 32-54 (86)
226 1wt6_A Myotonin-protein kinase 55.7 91 0.0031 26.1 9.5 7 413-419 46-52 (81)
227 2ic6_A Nucleocapsid protein; h 55.2 61 0.0021 26.9 8.3 65 376-443 4-69 (78)
228 1gk4_A Vimentin; intermediate 55.0 86 0.0029 25.6 11.4 26 407-432 28-53 (84)
229 2dq0_A Seryl-tRNA synthetase; 53.7 58 0.002 34.3 10.1 22 369-390 37-58 (455)
230 3ra3_B P2F; coiled coil domain 53.6 9.5 0.00032 25.6 2.6 26 309-334 2-27 (28)
231 3pe0_A Plectin; cytoskeleton, 53.3 1.7E+02 0.0058 28.5 15.2 26 322-347 49-74 (283)
232 3nmd_A CGMP dependent protein 53.1 48 0.0016 27.1 7.3 45 386-430 21-65 (72)
233 1z60_A TFIIH basal transcripti 53.1 5.7 0.0002 31.2 1.7 34 470-504 18-59 (59)
234 1t2k_D Cyclic-AMP-dependent tr 53.0 55 0.0019 25.1 7.4 23 311-333 26-48 (61)
235 1z2q_A LM5-1; membrane protein 52.9 0.85 2.9E-05 37.5 -3.2 38 468-505 22-75 (84)
236 3u06_A Protein claret segregat 52.4 27 0.00091 36.5 7.2 54 303-356 6-59 (412)
237 3i2d_A E3 SUMO-protein ligase 52.3 7 0.00024 40.7 2.8 45 466-510 248-303 (371)
238 1l8d_A DNA double-strand break 51.9 1E+02 0.0035 25.6 12.1 37 303-339 6-42 (112)
239 1ik9_A DNA repair protein XRCC 51.7 1.7E+02 0.0057 28.0 13.3 42 318-359 136-177 (213)
240 2ic9_A Nucleocapsid protein; h 51.5 35 0.0012 29.4 6.4 26 268-293 3-28 (96)
241 1jnm_A Proto-oncogene C-JUN; B 50.9 27 0.00092 27.0 5.3 33 300-332 22-54 (62)
242 3r2p_A Apolipoprotein A-I; amp 50.9 1.5E+02 0.005 27.1 13.6 25 440-464 155-183 (185)
243 1gd2_E Transcription factor PA 50.8 30 0.001 28.0 5.7 35 300-334 29-63 (70)
244 1wle_A Seryl-tRNA synthetase; 50.4 1.1E+02 0.0036 32.9 11.5 59 271-331 42-101 (501)
245 3plt_A Sphingolipid long chain 49.7 2E+02 0.0068 28.2 17.2 35 300-334 69-103 (234)
246 1ses_A Seryl-tRNA synthetase; 49.4 60 0.002 33.8 9.3 32 299-330 27-58 (421)
247 3vp9_A General transcriptional 49.4 30 0.001 29.5 5.7 75 311-395 11-86 (92)
248 2v4h_A NF-kappa-B essential mo 48.5 1.4E+02 0.0048 26.2 13.0 12 439-450 89-100 (110)
249 1ci6_A Transcription factor AT 48.4 54 0.0018 25.6 6.7 31 302-332 25-55 (63)
250 2akf_A Coronin-1A; coiled coil 48.2 28 0.00097 24.1 4.3 25 382-406 4-28 (32)
251 1l8d_A DNA double-strand break 48.1 1.2E+02 0.004 25.2 12.0 31 302-332 66-96 (112)
252 4emc_A Monopolin complex subun 48.1 84 0.0029 30.0 9.1 11 440-450 72-82 (190)
253 2ic6_A Nucleocapsid protein; h 47.7 73 0.0025 26.5 7.6 26 268-293 3-28 (78)
254 1gd2_E Transcription factor PA 47.2 77 0.0026 25.5 7.6 40 304-343 26-65 (70)
255 2efk_A CDC42-interacting prote 47.1 1.9E+02 0.0065 27.3 20.7 12 320-331 136-147 (301)
256 1go4_E MAD1 (mitotic arrest de 47.0 1.1E+02 0.0038 26.4 9.0 21 373-393 71-91 (100)
257 4dnd_A Syntaxin-10, SYN10; str 47.0 1.5E+02 0.0052 26.2 11.5 62 369-430 16-92 (130)
258 2dq3_A Seryl-tRNA synthetase; 47.0 51 0.0017 34.3 8.3 35 296-330 26-60 (425)
259 3m91_A Proteasome-associated A 46.7 38 0.0013 25.9 5.4 35 300-334 16-50 (51)
260 1hjb_A Ccaat/enhancer binding 46.6 1.3E+02 0.0044 25.2 9.3 61 274-339 15-75 (87)
261 3qne_A Seryl-tRNA synthetase, 46.5 79 0.0027 33.9 9.8 15 371-385 41-55 (485)
262 2ap3_A Conserved hypothetical 45.4 2.1E+02 0.0072 27.3 14.9 30 312-341 68-97 (199)
263 3mud_A DNA repair protein XRCC 45.1 39 0.0013 31.8 6.4 37 297-333 132-168 (175)
264 1weo_A Cellulose synthase, cat 44.9 16 0.00056 31.2 3.4 38 468-505 17-66 (93)
265 1joc_A EEA1, early endosomal a 44.6 1.1E+02 0.0039 26.6 8.9 27 298-324 9-35 (125)
266 2y3a_B Phosphatidylinositol 3- 44.5 68 0.0023 32.2 8.4 34 383-416 89-122 (302)
267 2wt7_A Proto-oncogene protein 44.2 90 0.0031 24.1 7.4 38 300-337 23-60 (63)
268 2qyw_A Vesicle transport throu 44.1 1.4E+02 0.0049 25.1 10.7 21 331-351 18-38 (102)
269 3ryc_E Stathmin-4; alpha-tubul 44.0 1.9E+02 0.0065 26.4 12.5 31 340-370 95-125 (143)
270 3lay_A Zinc resistance-associa 43.8 1.4E+02 0.0048 27.8 10.0 19 433-451 113-131 (175)
271 2xnx_M M protein, M1-BC1; cell 43.4 66 0.0023 29.6 7.4 21 385-405 67-87 (146)
272 1cii_A Colicin IA; bacteriocin 43.4 3.5E+02 0.012 29.4 18.6 122 316-444 337-458 (602)
273 1ci6_A Transcription factor AT 43.4 55 0.0019 25.5 6.0 32 296-327 26-57 (63)
274 2wt7_B Transcription factor MA 43.0 1.3E+02 0.0045 25.4 8.7 41 341-381 40-80 (90)
275 2k48_A Nucleoprotein; viral pr 43.0 78 0.0027 27.7 7.4 22 301-322 76-97 (107)
276 1vfy_A Phosphatidylinositol-3- 42.9 8.1 0.00028 30.7 1.2 24 469-492 13-45 (73)
277 2l7b_A Apolipoprotein E, APO-E 42.9 23 0.00079 35.7 4.8 13 305-317 112-124 (307)
278 2gmg_A Hypothetical protein PF 42.8 6.6 0.00023 34.3 0.7 27 466-505 66-92 (105)
279 3abh_A Pacsin2, protein kinase 42.6 2.4E+02 0.0081 27.1 19.7 21 365-385 159-179 (312)
280 2ic9_A Nucleocapsid protein; h 42.5 76 0.0026 27.3 7.2 63 376-441 4-67 (96)
281 1cun_A Protein (alpha spectrin 42.1 1.8E+02 0.0062 25.7 21.5 20 263-282 26-45 (213)
282 2yw8_A RUN and FYVE domain-con 41.9 8 0.00027 31.4 1.0 38 468-505 20-71 (82)
283 1lwu_C Fibrinogen gamma chain; 41.8 57 0.002 33.2 7.5 37 298-334 3-39 (323)
284 2w6a_A ARF GTPase-activating p 41.8 1.3E+02 0.0045 23.9 8.4 41 389-429 18-58 (63)
285 1lwu_C Fibrinogen gamma chain; 41.5 62 0.0021 33.0 7.7 14 416-429 23-36 (323)
286 1t2k_D Cyclic-AMP-dependent tr 41.5 87 0.003 23.9 6.9 35 300-334 22-56 (61)
287 3ghg_C Fibrinogen gamma chain; 41.4 1.3E+02 0.0045 31.7 10.3 30 385-414 92-121 (411)
288 1nkp_B MAX protein, MYC proto- 41.2 71 0.0024 25.7 6.6 33 300-332 47-79 (83)
289 1y02_A CARP2, FYVE-ring finger 41.0 2.2 7.6E-05 37.7 -2.6 37 468-505 20-65 (120)
290 1yuz_A Nigerythrin; rubrythrin 40.8 2.3E+02 0.0079 26.5 11.7 32 466-512 170-201 (202)
291 1gk6_A Vimentin; intermediate 40.2 1E+02 0.0035 23.7 7.0 44 351-394 9-52 (59)
292 2lw1_A ABC transporter ATP-bin 40.1 58 0.002 26.7 6.0 24 300-323 22-45 (89)
293 2fup_A Hypothetical protein PA 40.0 1.8E+02 0.0062 25.0 10.4 17 277-293 17-33 (157)
294 4fo9_A E3 SUMO-protein ligase 39.9 14 0.00049 38.2 2.8 45 466-510 214-269 (360)
295 1vyk_A Oxygen-evolving enhance 39.0 2.2E+02 0.0076 25.9 10.2 66 291-358 41-122 (149)
296 2ko5_A Ring finger protein Z; 38.6 7.3 0.00025 33.7 0.3 39 466-505 27-69 (99)
297 3plt_A Sphingolipid long chain 38.5 2.9E+02 0.01 27.0 21.2 52 372-424 92-143 (234)
298 3edu_A Beta-I spectrin, spectr 38.4 2.2E+02 0.0077 25.6 14.2 15 443-457 190-204 (218)
299 1x4u_A Zinc finger, FYVE domai 38.0 8.7 0.0003 31.3 0.7 25 468-492 15-48 (84)
300 1uix_A RHO-associated kinase; 38.0 1.6E+02 0.0056 24.0 11.0 47 376-422 3-49 (71)
301 1gu4_A CAAT/enhancer binding p 38.0 1.1E+02 0.0038 25.1 7.3 56 273-333 14-69 (78)
302 1wfk_A Zinc finger, FYVE domai 37.9 8.7 0.0003 31.9 0.7 37 469-505 11-62 (88)
303 2yy0_A C-MYC-binding protein; 37.8 49 0.0017 25.3 4.8 23 305-327 24-46 (53)
304 3hhm_B NISH2 P85alpha; PI3KCA, 37.8 3.5E+02 0.012 27.8 19.0 20 307-326 147-166 (373)
305 1ykh_B RNA polymerase II holoe 37.6 89 0.003 27.7 7.2 70 306-389 56-125 (132)
306 3lss_A Seryl-tRNA synthetase; 37.6 1.4E+02 0.0048 32.0 9.9 16 327-342 36-51 (484)
307 3lay_A Zinc resistance-associa 37.4 2.1E+02 0.0071 26.6 10.0 16 273-288 70-85 (175)
308 3a7o_A Autophagy protein 16; c 36.9 1.7E+02 0.006 24.0 9.0 26 381-406 15-40 (75)
309 3hd7_B Syntaxin-1A; membrane p 36.8 1.9E+02 0.0067 24.5 12.3 65 344-422 9-73 (109)
310 3aco_A Pacsin2, protein kinase 36.6 3.2E+02 0.011 26.8 21.8 24 362-385 156-179 (350)
311 1dvp_A HRS, hepatocyte growth 36.6 9.3 0.00032 36.0 0.7 36 468-503 162-213 (220)
312 3q0x_A Centriole protein; cent 36.5 1.3E+02 0.0044 29.3 8.7 50 300-349 171-220 (228)
313 3t7l_A Zinc finger FYVE domain 36.4 11 0.00039 31.1 1.1 38 468-505 21-72 (90)
314 1t3j_A Mitofusin 1; coiled coi 36.4 2E+02 0.007 24.6 8.9 53 273-337 39-94 (96)
315 2oqq_A Transcription factor HY 36.1 1.2E+02 0.0041 22.5 6.4 33 400-432 5-37 (42)
316 3a5t_A Transcription factor MA 35.9 1.5 5E-05 38.5 -4.5 67 276-342 30-100 (107)
317 1wt6_A Myotonin-protein kinase 35.9 1.9E+02 0.0066 24.1 9.1 13 378-390 25-37 (81)
318 3lss_A Seryl-tRNA synthetase; 35.7 2E+02 0.0069 30.8 10.8 41 292-332 29-69 (484)
319 1yke_B RNA polymerase II holoe 35.6 84 0.0029 28.6 6.9 70 306-389 56-125 (151)
320 1sjj_A Actinin; 3-helix bundle 35.6 4.8E+02 0.016 28.6 21.5 21 298-318 448-468 (863)
321 1g6u_A Domain swapped dimer; d 35.3 55 0.0019 24.3 4.5 25 302-326 22-46 (48)
322 2xv5_A Lamin-A/C; structural p 35.3 1.5E+02 0.005 24.1 7.6 41 354-394 17-57 (74)
323 3ibp_A Chromosome partition pr 35.2 2.2E+02 0.0076 28.9 10.4 38 314-351 20-57 (302)
324 1hjb_A Ccaat/enhancer binding 35.2 95 0.0033 26.0 6.6 31 399-429 44-74 (87)
325 3he5_A Synzip1; heterodimeric 35.2 1.3E+02 0.0045 22.4 6.5 29 376-404 9-37 (49)
326 4etp_A Kinesin-like protein KA 35.1 94 0.0032 32.2 8.0 31 309-339 5-35 (403)
327 4avm_A Bridging integrator 2; 34.9 3E+02 0.01 26.0 14.9 18 300-317 40-57 (237)
328 3mtu_E Head morphogenesis prot 34.7 92 0.0031 25.8 6.2 30 304-333 41-70 (77)
329 1sig_A Sigma70, RNA polymerase 34.7 3.4E+02 0.012 26.6 12.9 78 298-375 108-195 (339)
330 2xs1_A Programmed cell death 6 34.5 5E+02 0.017 28.5 26.2 84 275-360 439-528 (704)
331 1kd8_B GABH BLL, GCN4 acid bas 34.4 82 0.0028 22.7 5.1 30 399-428 2-31 (36)
332 2oeq_A Protein of unknown func 34.2 1.4E+02 0.0049 25.5 7.9 36 295-330 66-103 (122)
333 4dyl_A Tyrosine-protein kinase 34.2 3.9E+02 0.013 27.2 15.4 54 331-384 101-155 (406)
334 1gmj_A ATPase inhibitor; coile 34.1 2.1E+02 0.0072 24.0 8.8 26 414-439 53-78 (84)
335 1eq1_A Apolp-III, apolipophori 33.8 2.4E+02 0.0081 25.9 9.3 63 274-344 78-152 (166)
336 2fiy_A Protein FDHE homolog; F 33.4 5 0.00017 40.6 -1.8 39 466-505 181-230 (309)
337 3d2f_A Heat shock protein homo 33.3 2.1E+02 0.0074 31.3 10.9 63 271-336 525-593 (675)
338 3gp4_A Transcriptional regulat 33.1 2.5E+02 0.0085 24.6 9.5 9 268-276 39-47 (142)
339 3a2a_A Voltage-gated hydrogen 32.3 1.4E+02 0.0049 23.4 6.6 38 366-403 7-44 (58)
340 2dgc_A Protein (GCN4); basic d 32.2 55 0.0019 25.7 4.4 27 308-334 31-57 (63)
341 2yfa_A MCPS, methyl-accepting 32.0 3E+02 0.01 25.1 27.5 50 270-319 48-98 (258)
342 3viq_B Mating-type switching p 31.9 2.3E+02 0.0078 23.8 9.0 17 300-316 8-24 (85)
343 1ta8_A DNA ligase, NAD-depende 31.9 63 0.0021 33.0 5.9 50 290-339 3-58 (332)
344 1rh1_A Colicin B; FEPA, cytoto 31.9 1.4E+02 0.0048 32.2 8.6 34 318-351 314-347 (511)
345 2dgc_A Protein (GCN4); basic d 31.4 89 0.003 24.4 5.5 32 299-330 29-60 (63)
346 2x3v_A Syndapin I, protein kin 31.3 3.7E+02 0.013 26.0 24.5 26 360-385 145-170 (337)
347 2w83_C C-JUN-amino-terminal ki 31.3 1.8E+02 0.006 24.2 7.4 43 303-345 26-68 (77)
348 1gk6_A Vimentin; intermediate 31.3 86 0.0029 24.1 5.3 31 297-327 4-34 (59)
349 1dh3_A Transcription factor CR 31.2 63 0.0022 24.6 4.5 30 307-336 22-51 (55)
350 3pwf_A Rubrerythrin; non heme 30.9 3.1E+02 0.011 25.0 13.7 33 466-513 137-169 (170)
351 1ykh_B RNA polymerase II holoe 30.9 98 0.0033 27.4 6.4 38 296-333 88-125 (132)
352 3zyq_A Hepatocyte growth facto 30.7 14 0.00047 35.3 0.8 38 468-505 165-218 (226)
353 2zqm_A Prefoldin beta subunit 30.7 2.3E+02 0.0078 23.4 13.0 36 321-356 70-105 (117)
354 2dq3_A Seryl-tRNA synthetase; 30.1 33 0.0011 35.7 3.6 35 307-341 9-43 (425)
355 3a7o_A Autophagy protein 16; c 29.9 2.3E+02 0.0079 23.2 8.7 32 302-333 27-58 (75)
356 2etd_A LEMA protein; bromodoma 29.7 3.3E+02 0.011 25.0 12.1 23 332-354 19-41 (171)
357 2yo3_A General control protein 29.4 1.6E+02 0.0053 29.5 8.1 61 368-428 200-260 (268)
358 1lko_A Rubrerythrin all-iron(I 29.3 1.7E+02 0.0059 26.9 8.1 32 467-512 155-186 (191)
359 3d5a_X RF1, peptide chain rele 28.9 3.5E+02 0.012 27.9 10.9 16 327-342 75-90 (354)
360 2iaz_A Hypothetical protein SP 28.9 1.7E+02 0.0058 24.3 7.3 14 296-309 64-77 (113)
361 1s1c_X RHO-associated, coiled- 28.8 2.4E+02 0.0081 23.0 8.6 60 297-356 3-70 (71)
362 3viq_B Mating-type switching p 28.5 2.1E+02 0.0072 24.0 7.5 11 305-315 20-30 (85)
363 3u06_A Protein claret segregat 28.2 1.5E+02 0.0051 30.8 8.2 23 380-402 6-28 (412)
364 3uux_B Mitochondrial division 28.2 3E+02 0.01 27.2 9.7 80 263-342 142-226 (242)
365 3kdq_A Uncharacterized conserv 28.1 1.8E+02 0.0062 26.5 7.8 119 296-427 7-143 (154)
366 2oqq_A Transcription factor HY 28.0 1.2E+02 0.004 22.6 5.1 26 301-326 11-36 (42)
367 3edv_A Spectrin beta chain, br 27.9 3.9E+02 0.013 25.2 25.6 29 321-349 152-180 (323)
368 2xzr_A Immunoglobulin-binding 27.8 3E+02 0.01 23.9 16.9 43 386-428 64-106 (114)
369 1hci_A Alpha-actinin 2; triple 27.7 4.7E+02 0.016 26.1 20.4 209 237-447 176-434 (476)
370 1gu4_A CAAT/enhancer binding p 27.4 1.2E+02 0.0042 24.8 5.9 27 400-426 45-71 (78)
371 3opc_A Uncharacterized protein 27.4 3.1E+02 0.011 23.9 14.1 57 303-363 11-69 (154)
372 1quu_A Human skeletal muscle a 27.3 3.7E+02 0.013 24.7 16.2 18 266-283 44-61 (250)
373 2no2_A HIP-I, huntingtin-inter 27.2 3E+02 0.01 23.6 16.0 20 314-333 15-34 (107)
374 2akf_A Coronin-1A; coiled coil 27.2 78 0.0027 22.0 3.8 25 401-425 2-26 (32)
375 2xu6_A MDV1 coiled coil; prote 27.2 1.7E+02 0.0056 24.0 6.5 44 376-419 20-63 (72)
376 2lf0_A Uncharacterized protein 27.2 32 0.0011 30.8 2.4 21 274-294 7-27 (123)
377 1vp7_A Exodeoxyribonuclease VI 27.1 85 0.0029 27.0 5.0 63 362-424 22-84 (100)
378 3iyk_A VP5; icosahedral virus; 27.1 6.4E+02 0.022 27.4 18.2 11 300-310 97-107 (526)
379 3m9b_A Proteasome-associated A 26.9 67 0.0023 31.8 5.0 19 313-331 74-92 (251)
380 2avr_X Adhesion A; antiparalle 26.8 3.4E+02 0.011 24.1 15.1 23 295-317 4-26 (119)
381 3he4_A Synzip6; heterodimeric 26.7 1.9E+02 0.0064 22.0 6.2 32 394-425 20-51 (56)
382 1kd8_B GABH BLL, GCN4 acid bas 26.6 1.1E+02 0.0038 22.0 4.7 18 300-317 15-32 (36)
383 3c3f_A Alpha/beta peptide with 26.4 1E+02 0.0035 21.9 4.4 29 399-427 2-30 (34)
384 3lpx_A GYRA, DNA gyrase, A sub 26.2 51 0.0018 35.6 4.3 64 267-338 421-484 (500)
385 1zxa_A CGMP-dependent protein 26.2 82 0.0028 25.4 4.5 43 296-338 14-56 (67)
386 1fxk_C Protein (prefoldin); ar 26.1 2.1E+02 0.0071 24.5 7.5 31 300-330 95-125 (133)
387 4fye_A SIDF, inhibitor of grow 26.0 6.1E+02 0.021 26.8 12.1 94 261-355 477-579 (761)
388 2zdi_C Prefoldin subunit alpha 25.9 1.2E+02 0.0042 26.7 6.2 100 300-420 9-141 (151)
389 2pih_A Protein YMCA; regulate 25.9 3.5E+02 0.012 24.0 12.9 26 396-421 84-109 (151)
390 3swf_A CGMP-gated cation chann 25.6 2.8E+02 0.0096 22.8 8.5 34 305-338 5-38 (74)
391 3cl3_D NF-kappa-B essential mo 25.5 1.4E+02 0.0048 26.9 6.3 32 410-441 60-91 (130)
392 3ghg_B Fibrinogen beta chain; 25.5 6.5E+02 0.022 27.0 14.2 20 417-436 161-180 (461)
393 3iv1_A Tumor susceptibility ge 25.5 2.9E+02 0.0098 22.9 10.2 19 376-394 17-35 (78)
394 3f6n_A Virion-associated prote 25.4 1.6E+02 0.0056 26.4 6.6 54 302-355 4-57 (129)
395 2xhe_B Syntaxin1; exocytosis, 25.4 4.6E+02 0.016 25.1 12.4 32 319-350 136-167 (279)
396 3swy_A Cyclic nucleotide-gated 25.3 2.2E+02 0.0074 21.4 6.8 28 305-332 3-30 (46)
397 1a93_B MAX protein, coiled coi 25.2 79 0.0027 22.5 3.7 25 300-324 7-31 (34)
398 4dzn_A Coiled-coil peptide CC- 25.1 1.3E+02 0.0045 20.8 4.6 19 301-319 10-28 (33)
399 2aus_D NOP10, ribosome biogene 25.0 18 0.00062 28.7 0.4 12 494-505 2-13 (60)
400 2oxj_A Hybrid alpha/beta pepti 24.7 1.2E+02 0.004 21.7 4.4 26 400-425 3-28 (34)
401 4e61_A Protein BIM1; EB1-like 24.4 2.8E+02 0.0094 24.2 7.8 47 309-355 6-52 (106)
402 2zet_C Melanophilin; complex, 24.4 2.7E+02 0.0091 25.3 8.2 24 466-489 67-100 (153)
403 3rrk_A V-type ATPase 116 kDa s 24.2 2E+02 0.0067 28.4 7.9 36 304-339 230-266 (357)
404 1deb_A APC protein, adenomatou 24.2 2.5E+02 0.0085 21.7 8.1 35 371-405 4-38 (54)
405 2z0v_A SH3-containing GRB2-lik 24.2 4.5E+02 0.015 24.7 16.7 66 309-374 138-211 (240)
406 2rjz_A PILO protein; structura 24.1 1E+02 0.0035 27.5 5.3 35 300-335 22-56 (147)
407 1jnm_A Proto-oncogene C-JUN; B 24.1 1.1E+02 0.0037 23.5 4.7 30 307-336 22-51 (62)
408 3sjb_C Golgi to ER traffic pro 24.0 2.2E+02 0.0077 24.3 7.0 31 300-330 56-86 (93)
409 1nfn_A Apolipoprotein E3; lipi 23.9 4.4E+02 0.015 24.4 10.5 139 302-456 37-181 (191)
410 3kpe_A Fusion glycoprotein F0; 23.5 2.5E+02 0.0086 21.5 7.0 43 305-347 2-44 (51)
411 4fi5_A Nucleoprotein; structur 23.2 3.9E+02 0.013 23.6 8.7 9 402-410 44-52 (113)
412 2pnv_A Small conductance calci 23.1 81 0.0028 23.4 3.6 21 297-317 20-40 (43)
413 4ev6_A Magnesium transport pro 22.9 5.4E+02 0.019 25.2 14.4 44 274-321 175-218 (339)
414 2epq_A POZ-, at HOOK-, and zin 22.8 23 0.00079 23.6 0.6 33 466-504 9-45 (45)
415 2jo8_A Serine/threonine-protei 22.7 1.3E+02 0.0043 23.2 4.7 20 304-323 25-44 (51)
416 3i2w_A Syndapin, LD46328P; EFC 22.5 4.9E+02 0.017 24.5 15.2 21 320-340 66-86 (290)
417 2cly_A ATP synthase B chain, m 22.5 5.2E+02 0.018 24.8 13.9 36 357-392 130-165 (214)
418 1e8j_A Rubredoxin; iron-sulfur 22.5 38 0.0013 25.7 1.8 15 499-513 38-52 (52)
419 1zvu_A Topoisomerase IV subuni 22.4 75 0.0026 35.8 4.8 38 300-337 409-446 (716)
420 1use_A VAsp, vasodilator-stimu 22.3 1.5E+02 0.0051 22.3 4.9 26 309-334 17-43 (45)
421 3p7i_A PHND, subunit of alkylp 22.3 1.7E+02 0.0059 28.5 7.0 29 293-321 284-312 (321)
422 4ioe_A Secreted protein ESXB; 22.2 2.8E+02 0.0095 21.5 11.0 15 319-333 28-42 (93)
423 3aco_A Pacsin2, protein kinase 22.0 5.6E+02 0.019 25.0 18.6 19 321-339 88-106 (350)
424 4fi5_A Nucleoprotein; structur 22.0 3.1E+02 0.011 24.2 7.6 21 273-293 25-45 (113)
425 1fio_A SSO1 protein; four heli 21.9 4.3E+02 0.015 23.6 19.5 35 319-353 82-116 (196)
426 2q6q_A Spindle POLE BODY compo 21.9 3.3E+02 0.011 22.2 8.7 52 310-361 6-57 (74)
427 3vmx_A Voltage-gated hydrogen 21.8 2.7E+02 0.0092 21.2 7.2 42 396-437 2-43 (48)
428 3opc_A Uncharacterized protein 21.8 4E+02 0.014 23.2 11.7 42 278-320 19-61 (154)
429 1gqe_A Release factor 2, RF2; 21.8 6.1E+02 0.021 26.2 11.2 8 277-284 9-16 (365)
430 3c9i_A Tail needle protein GP2 21.6 5.7E+02 0.019 24.9 11.2 41 385-425 85-125 (242)
431 2v0o_A FCHO2, FCH domain only 21.6 4.8E+02 0.017 24.1 20.7 23 361-383 134-156 (276)
432 1g8x_A Myosin II heavy chain f 21.5 7.9E+02 0.027 28.5 13.1 24 436-459 962-986 (1010)
433 2l5g_B Putative uncharacterize 21.2 1.6E+02 0.0055 21.8 4.8 23 300-322 16-38 (42)
434 2pnv_A Small conductance calci 21.2 90 0.0031 23.1 3.5 30 296-325 12-41 (43)
435 2iub_A CORA, divalent cation t 21.1 6.1E+02 0.021 25.1 14.4 50 274-327 199-248 (363)
436 1nlw_A MAD protein, MAX dimeri 20.8 2.4E+02 0.0081 22.9 6.4 34 394-427 43-76 (80)
437 1kd8_A GABH AIV, GCN4 acid bas 20.6 1.1E+02 0.0039 21.9 3.8 11 304-314 5-15 (36)
438 2xqn_T Testin, TESS; metal-bin 20.5 63 0.0022 27.1 3.0 35 468-505 31-71 (126)
439 3he5_B Synzip2; heterodimeric 20.3 2.8E+02 0.0095 20.8 7.0 22 406-427 25-46 (52)
440 3ni0_A Bone marrow stromal ant 20.3 4.2E+02 0.014 22.8 11.2 57 305-361 23-79 (99)
441 2xkj_E Topoisomerase IV; type 20.3 1.5E+02 0.005 33.8 6.6 38 300-337 703-740 (767)
442 1vcs_A Vesicle transport throu 20.3 2.6E+02 0.009 23.4 6.8 17 335-351 12-28 (102)
443 1j1d_B Troponin T, TNT; THIN f 20.2 4.2E+02 0.014 22.8 8.1 35 300-334 56-90 (106)
444 3a2a_A Voltage-gated hydrogen 20.2 2.7E+02 0.0092 21.8 6.1 33 396-428 9-41 (58)
445 1cun_A Protein (alpha spectrin 20.2 4.4E+02 0.015 23.1 18.5 24 303-326 43-66 (213)
No 1
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=82.18 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=42.2
Q ss_pred ccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797 467 EFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 467 e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl 515 (517)
.+.|+||.+.+++ |||+||..||++|++. ..+||.|++ ...|++++||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 5789999985431 9999999999999976 779999999 8899999997
No 2
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.78 E-value=2.1e-08 Score=88.93 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=35.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+.+.+ |||.||..||..|+.. ...||.|++
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~ 95 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRK 95 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCC
Confidence 56889999999888 9999999999999864 789999998
No 3
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=4.6e-09 Score=81.34 Aligned_cols=50 Identities=8% Similarity=0.276 Sum_probs=42.7
Q ss_pred ccccccccc-cccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797 467 EFSAKFVNF-RRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG 516 (517)
Q Consensus 467 e~kC~iC~~-r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt 516 (517)
++.|+||.+ .+++ |||+||..||++++.....+||.|++ ..+|++++++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 578999999 3222 99999999999998776789999999 89999988764
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.75 E-value=3e-09 Score=82.84 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=42.6
Q ss_pred cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797 466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl 515 (517)
.++.|+||.+.+.+ |||+||..||++|+.. ..+||.|+. ..+|++++||
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeeccC
Confidence 56889999985421 9999999999999976 579999999 8999999997
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=8.9e-09 Score=79.95 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=39.5
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCc
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDY 510 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv 510 (517)
.++.|+||.+.+++ |||+||..||++|+.....+||.|++ ..+|+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 67899999998887 99999999999999766789999999 55554
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=85.35 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=44.8
Q ss_pred hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEee
Q psy10797 460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLY 514 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIy 514 (517)
.+.++ .++.|+||.+.+++ |||.||..||..|+......||.|+. ..+|+.+.+
T Consensus 16 ~~~l~-~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 16 VESIA-EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHH-HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred cccCC-CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 34444 67999999998776 99999999999999876579999999 777776654
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-08 Score=79.70 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=39.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCCCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKCNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C~~--~~~Dv~ 511 (517)
..+.|+||.+.+++ |||+||..||..|++. +..+||.|++ ..+|++
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 67899999998888 9999999999999973 5679999999 666653
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.59 E-value=2.1e-08 Score=79.91 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=40.7
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.++.|+||.+.+++ |||+||..||.+|+.....+||.|+. ...|+.+
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 56899999998888 99999999999999876889999999 5556543
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.2e-08 Score=78.17 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=40.9
Q ss_pred hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
++.++ ..+.|+||.+.+++ |||+||..||++|+.. +.+||.|++ ...|..
T Consensus 9 ~~~~~-~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 9 LSELT-PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCC-GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred HhhcC-CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence 34444 67899999998776 9999999999999965 689999999 555543
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.6e-08 Score=76.47 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=34.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKC 503 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C 503 (517)
.++.|+||.+.+++ |||+||..||++|++. +.++||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 67899999998888 9999999999999985 56799998
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=4.7e-08 Score=77.86 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=42.0
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhh-----ccCCCCCCC--CCCCceEee
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETR-----QRKCPKCNA--KANDYHRLY 514 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR-----~RKCP~C~~--~~~Dv~rIy 514 (517)
..+.|+||.+.+++ |||.||..||..++... ..+||.|+. ...|+.+-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 67899999998877 99999999999999872 679999999 667776644
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.52 E-value=3.4e-08 Score=85.66 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=37.1
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+.+.+ |||.||..||..|+......||.|+.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 95 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRY 95 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCc
Confidence 67899999998887 99999999999999877779999999
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.6e-08 Score=77.40 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh-----hccCCCCCCC--CCCCceEee
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET-----RQRKCPKCNA--KANDYHRLY 514 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t-----R~RKCP~C~~--~~~Dv~rIy 514 (517)
..+.|+||.+.+++ |||.||..|++.++.. +..+||.|+. ...|+.+-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 67899999998877 9999999999999876 2679999999 666765543
No 14
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.48 E-value=2.7e-08 Score=79.79 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=43.7
Q ss_pred hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
++.++ .+..|+||.+.+++ |||. ||..|+..+ ++||.|++...++.+||++
T Consensus 18 ~~~~~-~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 18 LRRLQ-EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHH-HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred HhcCc-cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEeeC
Confidence 44444 67899999999988 9999 999999876 7999999988889999985
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.47 E-value=0.00011 Score=71.61 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT--ERIKSNQLHKLAREE 378 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a--EK~KAdQKyfaamre 378 (517)
+|..++..+..|...++.++.+.+.+...+..+....+++..+..++=.++.+...++.+.-. ..++.+--|.++.++
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kE 98 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 444445555555555555555556666666666666666666655555555444444433211 224445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 379 KDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 379 KdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
.+.+..++..+...+....+.+..+++....+...+..++.++...+..+
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555555555554455555555555554444433
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-08 Score=80.35 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=40.3
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhh------ccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETR------QRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR------~RKCP~C~~--~~~Dv~r 512 (517)
.++.|+||.+.+++ |||.||..||..|+... ..+||.|+. ...|+.+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 67899999998888 99999999999998763 679999999 6566654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.4e-08 Score=78.07 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=39.9
Q ss_pred cccccccccccccc---------cccccchhhHHHHHhhh--ccCCCCCCC--CCCCceEe
Q psy10797 466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETR--QRKCPKCNA--KANDYHRL 513 (517)
Q Consensus 466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR--~RKCP~C~~--~~~Dv~rI 513 (517)
..+.|+||.+.+.+ |||.||..||+.|+... ..+||.|++ ...|+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 66899999987654 99999999999999864 479999999 66666544
No 18
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.43 E-value=0.00023 Score=65.08 Aligned_cols=12 Identities=0% Similarity=-0.421 Sum_probs=4.5
Q ss_pred hhhHHHHHHhHh
Q psy10797 246 AFQMSFYKSRWF 257 (517)
Q Consensus 246 ~~~~~al~~~l~ 257 (517)
..++..|+..+.
T Consensus 19 ~~~~~~l~~~l~ 30 (284)
T 1c1g_A 19 LDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.3e-08 Score=72.18 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.1
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKC 503 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C 503 (517)
..+.|+||.+.+++ |||+||..||++|+.. +..+||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 67899999998888 9999999999999765 67899998
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=75.53 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=35.9
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhc-cCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQ-RKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~-RKCP~C~~ 505 (517)
.++.|+||.+.+++ |||.||..||++|+.... +.||.|++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 60 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 67999999998877 999999999999998643 69999999
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=1e-07 Score=80.25 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=39.7
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhc--cCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQ--RKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~--RKCP~C~~--~~~Dv~r 512 (517)
..+.|+||.+.+++ |||.||..||..|+.... .+||.|+. ...++.+
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 56899999998887 999999999999997543 48999999 6666654
No 22
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.40 E-value=0.00097 Score=60.89 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=4.4
Q ss_pred hHHHHHHhHhh
Q psy10797 248 QMSFYKSRWFD 258 (517)
Q Consensus 248 ~~~al~~~l~~ 258 (517)
++.+++..|+.
T Consensus 7 ~~~~l~~~~~~ 17 (284)
T 1c1g_A 7 KMQMLKLDKEN 17 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhHHH
Confidence 33444444433
No 23
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=9.7e-08 Score=76.49 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=42.6
Q ss_pred hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
+++++ .++.|+||.+++++ |||+ ||..|++ +.++||.|+....++.+||++
T Consensus 19 ~~~~~-~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~-----~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 19 LRRLQ-EEKLCKICMDRNIAIVFVPCGHLVTCKQCAE-----AVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHH-HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHH-----HCSBCTTTCCBCCCCCBCCCC
T ss_pred HHcCC-CCCCCCcCCCCCCCEEEecCCCHHHHHHHhh-----CCCCCccCCceecCcEEEecC
Confidence 34443 66899999999988 9999 9999995 348999999977888999975
No 24
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.37 E-value=1.3e-07 Score=80.90 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=42.8
Q ss_pred cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797 466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl 515 (517)
..+.|++|.+.+++ |||+||..||++|++. ...||.|+. ..+|++++||
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 55789999885432 9999999999999976 579999999 9999999997
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.37 E-value=1.3e-07 Score=78.76 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=39.2
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.++.|+||.+.+++ |||.||..||..|+.. ..+||.|+. +..|+.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCc
Confidence 67899999998776 9999999999999975 579999999 5556554
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=1.1e-06 Score=82.76 Aligned_cols=47 Identities=4% Similarity=-0.142 Sum_probs=40.5
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.+|.|+||.+-+++ |||+||..||..++......||.|+. ...|+.+
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 77999999999999 99999999999999864457999999 5556654
No 27
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.34 E-value=1.5e-07 Score=80.60 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
.++.|+||.+.+++ |||+||..||.+|+......||.|+. +..|+.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 56899999998888 99999999999999876789999999 555654
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.34 E-value=2.1e-07 Score=79.62 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=42.7
Q ss_pred cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797 466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG 516 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt 516 (517)
.++.|+||.+.+++ |||+||..||++|++. ..+||.|++ ...++.++|+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccccccC
Confidence 46889999986532 9999999999999976 569999999 88899998874
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.34 E-value=2.2e-07 Score=80.19 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=40.0
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
..+.|+||.+.+++ |||+||..||..|+.....+||.|+. ..+|+.
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence 67899999998887 99999999999999887679999999 555544
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.33 E-value=1.6e-07 Score=85.09 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=36.8
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+.+.+ |||+||..||..|+......||.|+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 98 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 98 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCC
Confidence 66899999998877 99999999999999876789999998
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.32 E-value=2.8e-07 Score=75.51 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=35.4
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~ 505 (517)
.++.|+||.+.+++ |||.||..||..++... ...||.|+.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 58 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCC
Confidence 67899999998877 99999999999999653 369999999
No 32
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.32 E-value=3e-07 Score=71.92 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=43.4
Q ss_pred cccccccccccccc-------cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 466 REFSAKFVNFRRKS-------YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-------CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
....|.||.+++++ |||+ ||..|+..+.+ +..+||.|++...++.+||++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhceEEEecC
Confidence 45689999999886 9999 99999998764 467999999988899999974
No 33
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=3e-07 Score=72.14 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=43.7
Q ss_pred cccccccccccccc-------cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 466 REFSAKFVNFRRKS-------YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-------CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
.+..|.||.+++++ |||+ ||.+|+..+.. +..+||.|++...++.+||++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhceEeeecC
Confidence 45689999998887 9999 89999998875 467999999988899999985
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.31 E-value=2.7e-07 Score=78.20 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=37.8
Q ss_pred hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
++.+. .++.|+||.+.+++ |||.||..||..|+.. ...||.|+.
T Consensus 9 ~~~~~-~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~ 58 (108)
T 2ckl_A 9 ITELN-PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDV 58 (108)
T ss_dssp HHHHG-GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCC
T ss_pred hhccC-CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCc
Confidence 33444 67999999998877 9999999999999976 589999999
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.5e-08 Score=76.18 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=37.9
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
..+.|+||.+.+++ |||+||..||+.|+.. ..+||.|+. ...|+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhcc
Confidence 56899999998888 9999999999999865 579999998 444443
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=4.1e-07 Score=73.13 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=35.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+.|+||.+.+++ |||+||..||..|+.. ...||.|+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~ 57 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQ 57 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCc
Confidence 56899999998888 9999999999999965 679999999
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=82.97 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=36.9
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+.|+||.+.+++ |||.||..||..++......||.|+.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 121 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRH 121 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCc
Confidence 66899999998888 99999999999999876669999999
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.26 E-value=3.2e-07 Score=73.02 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=36.1
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC--CCCCc
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDY 510 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv 510 (517)
..+.|+||.+.+.+ |+|+||..||..|+.. ..+||.|++ ...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCccc
Confidence 56799999886653 9999999999999975 579999999 44443
No 39
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.24 E-value=2.5e-07 Score=75.61 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=43.3
Q ss_pred hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecCC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS 517 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt~ 517 (517)
++.++ .+..|+||.+++++ |||+ ||..|+..+ ++||.|+.....+.+||+++
T Consensus 12 ~~~l~-~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 12 LRKLK-EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HHHHH-HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTT
T ss_pred HHcCC-CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeCc
Confidence 44444 56789999999999 9999 999999754 59999999777789999863
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.23 E-value=5.8e-07 Score=69.57 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=34.6
Q ss_pred ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNAKA 507 (517)
Q Consensus 467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~~~ 507 (517)
...|+||.+.+++ |||.||..|+..|++. ...||.|++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhh
Confidence 4689999998766 9999999999999975 57999999833
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.22 E-value=5e-07 Score=67.04 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=33.2
Q ss_pred ccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
+..|+||.+.+++ |||+||..||++|+... ..||.|++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~ 51 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSG 51 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCC
Confidence 5689999987633 99999999999999875 89999997
No 42
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.6e-07 Score=69.69 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.7
Q ss_pred cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+.|+||.+.+++ |||+||..||+.|+.. ...||.|+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~ 64 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRK 64 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCC
Confidence 56889999985432 9999999999999976 679999997
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.20 E-value=1.6e-07 Score=80.29 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=36.8
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+.+.+ |||.||..||..|+......||.|+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 58 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRR 58 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCC
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCc
Confidence 56899999998877 99999999999999877789999998
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=3.4e-07 Score=78.88 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=40.2
Q ss_pred hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
++.++ .++.|+||.+.+++ |||.||..||..++. .+||.|+. ...|+.+
T Consensus 16 ~~~l~-~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 16 LDRLE-KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHHHH-HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCC
T ss_pred HHhch-hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccc
Confidence 44444 67999999998777 999999999999986 78999999 5556543
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.4e-07 Score=73.68 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=35.6
Q ss_pred cccccccccccccc----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..+.|+||.+.+++ |||+||..||..|+. +...||.|+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~ 56 (70)
T 2ecn_A 14 DEEECCICMDGRADLILPCAHSFCQKCIDKWSD-RHRNCPICRL 56 (70)
T ss_dssp CCCCCSSSCCSCCSEEETTTEEECHHHHHHSSC-CCSSCHHHHH
T ss_pred CCCCCeeCCcCccCcccCCCCcccHHHHHHHHH-CcCcCCCcCC
Confidence 56899999998877 999999999999987 5789999998
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.8e-07 Score=70.40 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.2
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.+..|+||.+.+.+ |+|+||..||+.|+.. +..||.|++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~ 60 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNM 60 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCc
Confidence 56789999997654 9999999999999976 469999999
No 47
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=70.06 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=43.6
Q ss_pred hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
.|.++.....|.||.+++++ |||+ ||..|++ +.++||.|+....++.+||..
T Consensus 8 ~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~-----~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 8 VEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK-----YFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH-----HCSSCTTTCCCCCCEECCCSS
T ss_pred ccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh-----cCCCCCCCCcchhceEEeecC
Confidence 34444456889999999999 9999 9999998 358999999988889999864
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.12 E-value=1.1e-06 Score=72.41 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=40.2
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.+|.|+||.+-+++ |||.||..||..++.. ..+||.|+. ...|+.+
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEE
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcch
Confidence 67999999999998 9999999999999985 789999999 5555544
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=68.34 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=33.4
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
....|+||.+.+.+ |||+||..||..|+.. ...||.|++
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~ 59 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRV 59 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCc
Confidence 55789999876542 9999999999999976 568999998
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.11 E-value=4.5e-07 Score=81.54 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=38.6
Q ss_pred hcccccccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 461 EFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 461 EKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
+.+. .+|.|+||.+.+++ |||.||..||..|+.....+||.|+.
T Consensus 26 ~~l~-~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 74 (141)
T 3knv_A 26 TKLE-AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVH 74 (141)
T ss_dssp GGCC-GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHH
T ss_pred ccCC-cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCC
Confidence 4554 78999999998877 99999999999999876669999987
No 51
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=79.39 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=40.7
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
..|.|+||.+.+++ |||+||..||.+|+.....+||.|+. +.+|+.+
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 67999999998887 99999999999999877679999999 6555543
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.09 E-value=3.4e-06 Score=80.36 Aligned_cols=46 Identities=4% Similarity=-0.138 Sum_probs=39.4
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~ 511 (517)
..|.|+||.+-+++ |||+||..||..++......||.|+. ...|+.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 56999999999988 99999999999999865556999999 555554
No 53
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.09 E-value=9.3e-07 Score=65.70 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=33.3
Q ss_pred cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
....|+||.+.+.+ |||+||..||++|++. ...||.|++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~ 51 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRL 51 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCC
Confidence 35689999987544 9999999999999976 679999986
No 54
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=1.4e-06 Score=68.99 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=33.8
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
....|+||.+.+.+ |+|+||..||+.|+.. +..||.|++
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCC
Confidence 45789999986554 9999999999999976 579999998
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.05 E-value=1.8e-06 Score=73.67 Aligned_cols=46 Identities=7% Similarity=-0.077 Sum_probs=40.6
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.+|.|+||.+-+++ |||.||..||..|+.. ..+||.|+. ...|+.+
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEE
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceE
Confidence 67999999999999 9999999999999974 789999999 6666654
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.03 E-value=1.4e-06 Score=72.07 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=33.5
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.+..|+||.+.+.+ |||.||..||+.|+.. ...||.|+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~ 85 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRC 85 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCc
Confidence 45789999976544 9999999999999975 679999997
No 57
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.02 E-value=2e-05 Score=91.46 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
+++.+++++++.+.+.+... .++..++..++.++++++.++.....+...+..+++.+...+++++++...+-.++.+
T Consensus 861 ~L~~eL~el~~~L~~le~~l--~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAEL--KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444433333 3455666666666666666666555555555556666666666666665555555555
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
.++.+..+..++.+.++....+.++.+.++.++..++...
T Consensus 939 ~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~ 978 (1184)
T 1i84_S 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978 (1184)
T ss_dssp HHHC------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444444444444444444443333
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.00 E-value=2.4e-06 Score=89.18 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=38.7
Q ss_pred cccccccccccc-----cccccchhhHHHHHhhhccCCCCCCCCCCCceEe
Q psy10797 468 FSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRL 513 (517)
Q Consensus 468 ~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rI 513 (517)
..|+||.+.+++ |||+||..|+..|+..+.++||.|+........|
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 689999999888 9999999999999987789999999933333333
No 59
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.99 E-value=1e-05 Score=93.79 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
.++..++.++++|+.+++.++++.+.+..++..+.+..+++......+-.++.+.++...++..|+....++...+.++.
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el 992 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444445555555555555544444444444444
Q ss_pred HHHHHHHHHHH
Q psy10797 380 DTLREQVQALS 390 (517)
Q Consensus 380 daLe~Evk~Lk 390 (517)
+.++.++..+.
T Consensus 993 ~~lee~l~~l~ 1003 (1184)
T 1i84_S 993 LIMEDQNNKLT 1003 (1184)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44443333333
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.97 E-value=3.5e-06 Score=71.56 Aligned_cols=46 Identities=7% Similarity=-0.032 Sum_probs=40.7
Q ss_pred cccccccccccccc-----cc-cccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797 466 REFSAKFVNFRRKS-----YF-FVEFLDCLRTRYETRQRKCPKCNA--KANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----Cg-HvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r 512 (517)
.+|.|+||.+-+++ || |.||..||..|+.. ...||.|+. ...|+.+
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEE
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceE
Confidence 67999999999999 99 99999999999986 789999999 6666654
No 61
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.96 E-value=3.9e-06 Score=68.74 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=34.9
Q ss_pred ccccccccccccc-c--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRK-S--------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K-~--------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+... + |||.||..|+...++.....||.|++
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~ 58 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCC
Confidence 5689999999763 2 99999999999988766789999999
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.94 E-value=1.7e-06 Score=65.73 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=32.0
Q ss_pred cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.++.|+||.+.+++ |||.||..||.. ...+||.|++
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~ 45 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQA 45 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCc
Confidence 46889999998887 999999999987 3679999999
No 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.90 E-value=4e-06 Score=71.14 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=32.9
Q ss_pred ccccccccccccc----------------------c-cccccchhhHHHHHh----hhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRK----------------------S-YFFVEFLDCLRTRYE----TRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K----------------------~-CgHvFC~~CIq~rl~----tR~RKCP~C~~ 505 (517)
.+..|+||.+.+. . |+|+||..||..|+. .+...||.|++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 4468999988641 1 999999999999996 34679999998
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.89 E-value=2.3e-06 Score=87.66 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=43.0
Q ss_pred hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797 460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG 516 (517)
Q Consensus 460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt 516 (517)
+++++ .+..|+||.+.+++ |||. ||..|+..+ ++||.|+.....+.+||++
T Consensus 289 ~~~l~-~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 289 LRRLQ-EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHHHH-TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred HHhCc-CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeEEeecC
Confidence 44444 67899999999998 9999 999999865 7999999988889999975
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.85 E-value=2.4e-05 Score=78.11 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=39.3
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhh-ccCCCC--CCC--CCCCce
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPK--CNA--KANDYH 511 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~--C~~--~~~Dv~ 511 (517)
.+++|+||...+++ |||.||..||..+++.. ..+||. |++ ...|+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 56899999998888 99999999999999763 468999 999 666654
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=1.1e-05 Score=67.38 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=34.8
Q ss_pred cccccccccccccc------cccccchhhHHHHHhhh-----ccCCCC--CCC
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-----QRKCPK--CNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-----~RKCP~--C~~ 505 (517)
.+|.|+||.+-+++ |||+||..||..|+... ..+||. |+.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 46899999998888 99999999999999864 359999 873
No 67
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.65 E-value=0.014 Score=56.84 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--H
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL--A 375 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa--a 375 (517)
.+-.|..+..++.+|+..+..+..+.+.|..++..+...+...+.....+-.++...+..+..+..-.-|..++... -
T Consensus 9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34667788888999999998888888888888888888888888888888888888777776664322222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~ 431 (517)
.++-++|..|+..++..+....+.|..+.+.-..+...+..++.++..++..++..
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677776666666666666666666655556666666666666665555443
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.61 E-value=0.0012 Score=76.40 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT 381 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda 381 (517)
...+|.++++|+.+++..+++...|..++..+...+++ ....+-.++.+++ ++..|+.+++++-..+.++.+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~---e~~~L~~~l~~le----~~~~e~~~~~~~v~~L~~e~~~ 995 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST---ETEKLRSDVERLR----MSEEEAKNATNRVLSLQEEIAK 995 (1080)
T ss_dssp ----------------------------CHHHHHHHHH---HHHHHHHTHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776666655555544433322221 1111111111111 1223333344444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
++.+++.+....+...+.+.++++ .|+.++.+++++.+.+++.++..+
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444444443 344566666666665555555443
No 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-05 Score=64.77 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=23.3
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|+|+|+..||++|+.+ +..||.|++
T Consensus 48 C~H~FH~~Ci~~Wl~~-~~~CP~CR~ 72 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQ-NNRCPLCQQ 72 (81)
T ss_dssp TSCEEEHHHHHHHTTT-CCBCTTTCC
T ss_pred CCCccChHHHHHHHHh-CCCCCCcCC
Confidence 9999999999999976 569999998
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.47 E-value=0.0037 Score=72.48 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
+++..+|++..+|+.++... .+.+..|++.+.+..++++.+ ..++.+.+..+..|..|-.+.+..+..+.+++
T Consensus 935 ~rL~~~e~~n~~L~~~~~~~---~~~~~~e~~~L~~~l~~le~~----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 935 RKIDEQNKEYKSLLEKMNNL---EITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp ----------------CHHH---HHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555443322 234555666665555555443 22233444555556566666677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQ 426 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkq 426 (517)
+.++.+.+.++. ...+.+..|++....|++++.+++..+...++
T Consensus 1008 ~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1008 KTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877774 34477888888777788888888766554443
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.45 E-value=5.8e-05 Score=59.10 Aligned_cols=49 Identities=6% Similarity=-0.065 Sum_probs=42.6
Q ss_pred ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797 467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG 516 (517)
Q Consensus 467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt 516 (517)
.|.|++|.+-.+| |||+||..||++|+.. +.+||.+|. ...|+.+++.+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECccC
Confidence 3789999998887 8999999999999975 678999999 88999888754
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.44 E-value=4.7e-05 Score=63.04 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=32.8
Q ss_pred cccccccccccccc--------cccccchhhHHHHHhhh-------ccCCCC--CCC
Q psy10797 466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETR-------QRKCPK--CNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR-------~RKCP~--C~~ 505 (517)
+.+.|+||.+..+. |||.||.+|+...++.. .-+||. |+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 35789999986543 99999999999999863 248999 987
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.38 E-value=7.2e-05 Score=65.00 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=38.3
Q ss_pred cccccccccc------cccccchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797 470 AKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLY 514 (517)
Q Consensus 470 C~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy 514 (517)
|+.|....+. |.|+||.+|+..+.+.+...||.|+...++|..+-
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 7778777666 99999999999998888899999999777776653
No 74
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.37 E-value=0.02 Score=72.88 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL-- 374 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa-- 374 (517)
|+...++.+++++++++.+|+.++++.+.++.+|..-.+.-++-++.....-.++.+.++.+.+ .|..++.....
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~---~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV---QKVKAYADLEKAE 2007 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcC
Confidence 3444555555555555555666666777777776655444444333332222222222221111 12222222221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 ----AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAI 436 (517)
Q Consensus 375 ----amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~ 436 (517)
++++...+++++...++++++..+.+..++++-..|+.+.+.+.+|...++..++.-++++.
T Consensus 2008 Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2008 PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344444444444444444444444444444444444444444444444444444333333
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.33 E-value=0.081 Score=50.50 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK 379 (517)
+++..++.+..+-+..-..++++ |-.||+..++--.+++.+|.++-.++.+.-++......| +....
T Consensus 24 q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~ 90 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 44455555555555544444444 456777777777777777776666555554433333222 22234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
..|+.++..|+...+.....|..|+-
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666555544
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.21 E-value=0.0041 Score=65.62 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 415 TNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452 (517)
Q Consensus 415 s~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel 452 (517)
..++++...++...+..++++.|+.++.+.++.++.++
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333433333334443444444445555555544433
No 77
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.03 E-value=0.11 Score=48.93 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhhHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKL-----ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkl-----ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrkl 348 (517)
.|+++|.++++.++.+.... ...|..-.++.+|..+.+|+.++..++..-.+|-.|+-.+..+++.-..--.+--
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777766543211 2445555666666666677777777777766666666666666654222211111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 349 qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
.-++ .++..+..|..-++.......+++...+.|+.++.++||+-+
T Consensus 90 e~~~----------------------------elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 90 EMIG----------------------------DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 233355555555666666677777777778888888888644
No 78
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.95 E-value=0.032 Score=53.23 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR 383 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe 383 (517)
.+|.+++.+.+++..++.....|-.|++..-.=|+..+.+..+ ++..+++.+..|..++-....+...+--..|.++
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556666666666666666667777776666555555544433 4555666666666666666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415 (517)
Q Consensus 384 ~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs 415 (517)
...+.....++.......+.-|....|.+.|.
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666665555545554443
No 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.92 E-value=0.085 Score=67.32 Aligned_cols=88 Identities=7% Similarity=0.137 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E 407 (517)
.|+...++..++.+++...+-.+|.+.++++.+| +.+|..++++|+.++.++...+..++.....|..|....
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L-------~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATY-------KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4455555555555555555555555555555554 567889999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 408 RFLQTVLTNAEKELH 422 (517)
Q Consensus 408 r~L~~kLs~lEKEL~ 422 (517)
....+.+..++.++.
T Consensus 2087 ~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2087 GRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 667777777776654
No 80
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.89 E-value=0.00037 Score=60.19 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=23.3
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|+|.|+..||+.|+.. +..||.|++
T Consensus 73 C~H~FH~~Ci~~Wl~~-~~~CP~Cr~ 97 (106)
T 3dpl_R 73 CNHAFHFHCISRWLKT-RQVCPLDNR 97 (106)
T ss_dssp TSCEEEHHHHHHHHTT-CSBCSSSCS
T ss_pred cCcEECHHHHHHHHHc-CCcCcCCCC
Confidence 9999999999999976 679999998
No 81
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.83 E-value=0.00018 Score=63.55 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 480 YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 480 CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|+|.|+..||+.|+.+ +..||.|++
T Consensus 84 C~H~FH~~CI~~Wl~~-~~~CP~Cr~ 108 (117)
T 4a0k_B 84 CNHAFHFHCISRWLKT-RQVCPLDNR 108 (117)
T ss_dssp --------------------------
T ss_pred cCceEcHHHHHHHHHc-CCcCCCCCC
Confidence 9999999999999987 579999998
No 82
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.66 E-value=0.27 Score=45.59 Aligned_cols=118 Identities=21% Similarity=0.335 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE 378 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamre 378 (517)
-.+...||.++..+|..++........|.. ..++..++..++...+....+|+.+-.....+-..+-.+
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~-----------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~ 80 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEE 80 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777755544333322 222333334456678888888888888888888888889
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 379 KDTLREQVQALSLQI-EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 379 KdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa 427 (517)
+..++.|+-.|.+++ +..++.++.-.-.-..+..+...+++++......
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887 6666666543322223334444444444444333
No 83
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.59 E-value=0.076 Score=49.86 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=84.3
Q ss_pred hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797 245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL--ADEEAMRKIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl--ad~Eal~rL~~lE~EieeLr~kL~s~eqe 322 (517)
++++++.|+.+|..+.. -.++|.+...|+|.......+..+.+ ..-|...++..++.....|+..+..+...
T Consensus 4 ~neKi~~LekQL~E~n~------kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEAND------LLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp ------CTHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888887776554 23455666666666665554432222 23455566667776666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH----HHHHHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR----EQVQALSL 391 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe----~Evk~Lk~ 391 (517)
.+.=-..-...+....+++..+..+-.++...-+...|+..|+-+..-+...+.+++..++ =++++++.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~ 150 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444455555666778888888887777777777777777776666666666666666 33444443
No 84
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.24 E-value=0.42 Score=42.35 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
.++.++.++..|+.++...+..-.-|-.....+.+-..+++.|.+.--..+.+.++...+| ...+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L--------------~~~k~ 79 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL--------------IKNKI 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HHHHH
Confidence 3444455555555555444444333333444444444444444433333334444433333 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
.|+.++..+...++...+....|....+.+...+.++++++..+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555433
No 85
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0031 Score=51.83 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=32.8
Q ss_pred cccccccccccccc-------cc-----cccchhhHHHHHhhhc-cCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-------YF-----FVEFLDCLRTRYETRQ-RKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-------Cg-----HvFC~~CIq~rl~tR~-RKCP~C~~ 505 (517)
.+-.|.||.+.+.+ |. |.|...||++|+.... +.||.|+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~ 66 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKY 66 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCC
Confidence 34679999976533 74 9999999999998764 69999998
No 86
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.98 E-value=0.93 Score=41.42 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA----NFKLMTERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~----n~KL~aEK~KAdQKyfaamreKdaLe~ 384 (517)
|++|+.-+++...+.+-.-.|++..|+-.++-|. ||.|+.-+-.. +.+|-+|-. .+.+-.+-.+.
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqg----KVDQlqKRn~~HQKEi~~Lrae~~-------~~QRn~~K~~~ 81 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQG----KVDQLQKRNVAHQKEIGKLRAELG-------TAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHhccHHHHHHHHHHHHHH-------HHHHhHHHHHH
Confidence 3344444444444444455566666665555433 34444333222 222322221 22222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQT---VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN 455 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~---kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek 455 (517)
.++.-..|-+.|+--|++|.|.|.-|.. -+.++...+-.++..++..+-++.|.--.-+.|+.+-+.++++
T Consensus 82 ~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vker 155 (167)
T 4gkw_A 82 LLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEK 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 3333333334455667777776655543 3455555666666666665555555444445555554444444
No 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.97 E-value=0.07 Score=49.46 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred ceeeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Q psy10797 237 TLFVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ 315 (517)
Q Consensus 237 ~~~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~k 315 (517)
+|-.-+-+|=++.+.|++.|...+. ......-|.+-+.++.+++.+.... .++...+..+..++.+=+.+
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~---------~~~~~e~~~L~~~l~~E~~~ 73 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKREL---------SDRDDEVKRLREDIAKENEL 73 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHH
Confidence 3444455666777777777777665 3333223333334444444433111 11222233333333333333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
-...+.+...+..|+|.+..+. ..| |+..-..++++...++..+..|+.++..
T Consensus 74 R~~aE~~~~~ie~ElEeLTasL------------------------FeE---AN~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 74 RTKAEEEADKLNKEVEDLTASL------------------------FDE---ANNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHH------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666665542 222 3333345677777777777777766554
Q ss_pred HHHHHHHHHH
Q psy10797 396 MHTAIRKLEE 405 (517)
Q Consensus 396 Q~e~I~kLeE 405 (517)
-..+|..+.+
T Consensus 127 ~~~~l~~lq~ 136 (154)
T 2ocy_A 127 KDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.90 E-value=0.3 Score=41.69 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
+.|+..|..++.+...|..||+.+++-.+.+..+...+=.+...++..-.+...|...-.-.......+.++++.+....
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555444444444554444444444333334445555566666666655
Q ss_pred HHHHHHH
Q psy10797 390 SLQIEAM 396 (517)
Q Consensus 390 k~QlekQ 396 (517)
+.++++.
T Consensus 87 ~~qLdkL 93 (96)
T 3q8t_A 87 QMQLDKL 93 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 89
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.68 E-value=0.25 Score=42.65 Aligned_cols=70 Identities=24% Similarity=0.449 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy10797 333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRK 402 (517)
Q Consensus 333 IgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~k 402 (517)
+++.|++++++..++-.++.+.|....+|..+-.+...+-..+-.++..++.|+-.|.+++ +..++.|+.
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ 73 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD 73 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777877777777777777777777777777777777777765 444444443
No 90
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.53 E-value=0.6 Score=41.01 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
.-+.+|++||.+++....+...|..|++.+..+.++.+..
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999998886653
No 91
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=95.38 E-value=2.4 Score=42.09 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhHHHHhhc
Q psy10797 275 FRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 275 lr~rlk~l~e~~~k~rqkl 293 (517)
+.+.+.++...+.++...+
T Consensus 42 l~~~le~lr~~L~Py~~el 60 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQL 60 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 92
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.0093 Score=48.75 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=32.3
Q ss_pred cccccccccccc------cccccchhhHHHHHhhhc-cCCCCCCC
Q psy10797 468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQ-RKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~-RKCP~C~~ 505 (517)
-.|.||++.... |+|.|=..||..|+++++ +.||.|+.
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~ 60 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcC
Confidence 468889886543 999999999999998763 79999999
No 93
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.19 E-value=2 Score=39.82 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
+|.++++-..+++..+.....|-.|+..++.-.+.+.....+--+.-...++.+..|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L 82 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777777777888888888777776655555444444444444444
No 94
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.01 E-value=2.2 Score=39.47 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
++.+..+...-+.+++.+-++..+.-...-.++..+.+...- |+.++..+-+....|+.++..|...+....+
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE-------AE~RAE~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE-------AETRAEFAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444443322 3344444444444444444444444433333
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.63 E-value=0.91 Score=49.20 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.+.++.+.--..++.|+..++.|-..|+|||-
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556777777777888888887775
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.54 E-value=0.45 Score=39.90 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM 362 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~ 362 (517)
..+||..+-..|.-|+..++.+++++..|..|.+.+...-+.+..+|.++-++...+++++..|.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888889999999999999999999999999999999999999999999999998874
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.49 E-value=0.45 Score=42.06 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD 380 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd 380 (517)
.|..+...+..|+..+++++....+|..-|..+++-|+....+.+.+ +.++|+...++-.|-...-+-|..+|.-|-
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~---i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNK---LAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555655655555544444433 356788888888888888889999999999
Q ss_pred HHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQI 393 (517)
Q Consensus 381 aLe~Evk~Lk~Ql 393 (517)
+|+.|+.+-++.+
T Consensus 114 ~Ld~EIatYRkLL 126 (129)
T 3tnu_B 114 ALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhH
Confidence 9999988876543
No 98
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.45 E-value=3.1 Score=45.48 Aligned_cols=18 Identities=0% Similarity=0.106 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdm 340 (517)
++.+..+++.+.+.|...
T Consensus 433 ~~~~~~~~~~~~~~Y~~~ 450 (592)
T 1f5n_A 433 YRLFVQKLQDLKKKYYEE 450 (592)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456777777777777653
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.31 E-value=1.9 Score=36.85 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV 450 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe 450 (517)
|..++.-++|........+..++......-.++++.-..|+.++..+|.++...+..+...+.++.+..+...+...++.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~ 89 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555666666666666555555554444444444444443333333
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=94.19 E-value=0.33 Score=42.93 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=24.5
Q ss_pred cccccccccccc---------cccccchhhHHHHH-----hhhccCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-----ETRQRKCPKC 503 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-----~tR~RKCP~C 503 (517)
-.|.+|...|-- ||++||..|...+. ....|-|-.|
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C 119 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC 119 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHH
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHH
Confidence 478899886532 99999999976542 2344555544
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.17 E-value=0.49 Score=48.96 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
+.++++.++.++..+..++++..+....+...+..+.+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 447 LAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 3445555556666666555555555555555555555443
No 102
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.10 E-value=0.75 Score=40.78 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT 381 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda 381 (517)
|..+...+..|+..+++++....+|..-|..+++-|+....+.+.+ +.++|....++-.|-...-+-|..+|.-|-+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~---i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM---IGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544444443 3567888888888888888899999999999
Q ss_pred HHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQI 393 (517)
Q Consensus 382 Le~Evk~Lk~Ql 393 (517)
|+.|+.+-++.+
T Consensus 117 Ld~EIatYRkLL 128 (131)
T 3tnu_A 117 LEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhH
Confidence 999988877654
No 103
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=93.20 E-value=2.9 Score=45.10 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred hHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 255 RWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 255 ~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.+......||+ .-.+|-.+..+|+++++..+.++-+.. ++...++ .-.+++++++-.......++.=.+|++.+
T Consensus 77 V~G~~~~~pDP--LsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k---~g~~l~~v~~~~~~~~~~e~~e~~q~~~L 151 (526)
T 3iyk_A 77 VLGSGEEIPDP--LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEK---FGKELEEVYNFMNGEANAEIEDEKQFDIL 151 (526)
T ss_pred hcccCCCCCCC--CCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34444445665 558888999999999988877554442 3333333 33455566555554444444445799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 377 (517)
Q Consensus 334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr 377 (517)
++|.+.+.+....--.+|...-++..|=..+|..-..+.=..|+
T Consensus 152 ekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr 195 (526)
T 3iyk_A 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYR 195 (526)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 99999999888888888888888888877777776665555554
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.09 E-value=3.8 Score=44.47 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
.+.|++.|.++-.+++.|..+++.
T Consensus 133 IrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444443
No 105
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.85 E-value=5.2 Score=36.48 Aligned_cols=111 Identities=11% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 278 FACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA 357 (517)
Q Consensus 278 rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~ 357 (517)
|+.-+++.+.+...++ ..+..+|..++...++-......++......-.-|+.++..++++..
T Consensus 4 ri~llEeeLer~eerl--~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~--------------- 66 (147)
T 2b9c_A 4 RIQLVEEELDRAQERL--ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH--------------- 66 (147)
T ss_dssp -------CCGGGGTTT--THHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH---------------
Confidence 4444444444433333 34455555555555444444443433333333334444433333222
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411 (517)
Q Consensus 358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~ 411 (517)
++| -|+.||.-+.+-...++.++.......+.....|..|++.-+.+.
T Consensus 67 ----~ae--eadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 67 ----IAE--DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp ----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 367788887777777777666555555555555555555444333
No 106
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.40 E-value=1.2 Score=37.33 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
||++||.+++.+..+...+..|++.+..+.++.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998887777663
No 107
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.33 E-value=0.67 Score=42.37 Aligned_cols=119 Identities=10% Similarity=0.098 Sum_probs=79.2
Q ss_pred eeeeecchhhhHHHHHHhHhhhhcCCcccc---------ccccc---HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHH
Q psy10797 238 LFVSICTSAFQMSFYKSRWFDFRSLSDSAS---------NIYGS---LEFRKFACVVRDSKRDERKKLADEEAMRKIKQL 305 (517)
Q Consensus 238 ~~~~~~~a~~~~~al~~~l~~~~~~~d~~~---------~i~~e---~elr~rlk~l~e~~~k~rqklad~Eal~rL~~l 305 (517)
|+=.+..++.+++-....|+...+.+|... .+..+ ..++.+|+++.......-+++ +|+.++|..+
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy--eE~~RKl~~~ 85 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY--EEVARKLVII 85 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 344566677777777777776666333311 11111 155556666665555555556 7888999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
|.++++...+.+..+.....|-.||..+|.-.+.+...-.+--+.-...++.+
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887665544444333344433
No 108
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.27 E-value=5.6 Score=35.05 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365 (517)
Q Consensus 329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK 365 (517)
||..+..-++.+.+...+--....+.++.+.+|..|+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek 50 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333334444444444444443
No 109
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.08 E-value=5 Score=34.01 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
.++.-++|........+..++......-.++++.-..|+.++..++.++......+
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444444444444444444444333333
No 110
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=92.08 E-value=5.9 Score=41.44 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
.++.|+..+++|...|+|||..
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666653
No 111
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=92.01 E-value=0.63 Score=50.56 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=25.8
Q ss_pred cccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797 270 YGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEE 324 (517)
Q Consensus 270 ~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~e 324 (517)
-.-..+..+.++-+.....+|++++.+.-++ ..+|.+..+|+.++...+++..
T Consensus 300 ~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 352 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAKQAQREKLQLEIAAR--ERAEKKQQEYQDRLRQMQEEME 352 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555556665556666677775422211 1233344455555554444433
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.61 E-value=4.3 Score=41.93 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 389 LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 389 Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
.+...++..+.|.+++|....+...+.++.+++...
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 444455566677777775555555555555555433
No 113
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.53 E-value=1.2 Score=40.49 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy10797 348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRK 402 (517)
Q Consensus 348 lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~k 402 (517)
...+...++...+|..+-.....+-..+-.++..++.|+-.|.+++ +..++.++.
T Consensus 38 ~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ 93 (135)
T 2e7s_A 38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD 93 (135)
T ss_dssp HHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777778888888888888888776 555555544
No 114
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.52 E-value=6.3 Score=34.02 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
|+..-..++++...++..+..|+.|+.
T Consensus 67 AN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 67 ANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455667778888888888887764
No 115
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.49 E-value=2 Score=35.23 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT 363 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a 363 (517)
++.+|+.++|.+-.+|+.++..++++.+.=..|=+.....++.+.++..-|++++.+.-+-.+||..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 4556666666666666666666666665555666666666777777888899999999999999864
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.27 E-value=2.2 Score=38.50 Aligned_cols=8 Identities=0% Similarity=0.339 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q psy10797 306 EDQTHQLQ 313 (517)
Q Consensus 306 E~EieeLr 313 (517)
...+.+++
T Consensus 38 d~km~ei~ 45 (138)
T 3hnw_A 38 NNKITEFN 45 (138)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33444444
No 117
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=90.92 E-value=20 Score=38.79 Aligned_cols=26 Identities=4% Similarity=0.009 Sum_probs=17.1
Q ss_pred cccccccHHHHHHHHHHHhhhHHHHh
Q psy10797 266 ASNIYGSLEFRKFACVVRDSKRDERK 291 (517)
Q Consensus 266 ~~~i~~e~elr~rlk~l~e~~~k~rq 291 (517)
+.+|-.-+++.+|+++-++.+++...
T Consensus 287 vs~ilt~~elkqrqeee~r~~qew~~ 312 (551)
T 2b5u_A 287 VSDVLSPDQVKQRQDEENRRQQEWDA 312 (551)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHHHHHHHHHhhh
Confidence 34555666888888887766655433
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.90 E-value=3.3 Score=37.38 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
+-.+..+.+.|+..++.++++...|..|+....-.++.....+.++..++.+.+..+.+|
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666665555555555555555555555555555
No 119
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.42 E-value=8.8 Score=33.77 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEK-------ERFLQTVLTNAEKE 420 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~-------Er~L~~kLs~lEKE 420 (517)
+....-.|+.++.+|+...+.....|+.|+-. +|...+.|.++|..
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 34445556667777777777666666665542 33344444555443
No 120
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.34 E-value=1.6 Score=36.35 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT 363 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a 363 (517)
+++.+|+.++|.+-.+|+.++..++++.+.=..+=+.....++.+.++..-|+++|.+.-+-.+||..
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34456666666666666666666666666666666666667777778888899999999999999864
No 121
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.20 E-value=8.5 Score=39.49 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 332 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 332 sIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
+..+|.++++++..+.+.+.....+ +.+....+.+..+.+++...++++|...-+.
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVME-----------ARNVTHLLQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHH-----------hhhHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 3455666666665555544432222 2233344445555555555555555444443
No 122
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.95 E-value=3.1 Score=36.43 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEd 339 (517)
.+..++..+......+|.|+ ++-..+-..+|.++..||+.++ .++...++|..||.-+-+.|++
T Consensus 38 ~l~leldn~~~~~edfk~Ky--E~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKL--QEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777 3333444567788888887777 4678888888899888888875
No 123
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.83 E-value=3.9 Score=37.85 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
++|..++.++++-.+.++.+..|..+|.-|+..+++...+++..|..+|+.
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555556666666666666666666666666655543
No 124
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.65 E-value=3.5 Score=34.33 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
.|++|+-.+.||..++......|+.+|+.|+.+++.+...-.+++..-+.+...|+.-=-+|..+++.+.
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3678888899999999999999999999999998888777666655555555555544445555555543
No 125
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.13 E-value=15 Score=40.12 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.2
Q ss_pred HHHHHhhhHHHHhhc----CcHHHHHH
Q psy10797 279 ACVVRDSKRDERKKL----ADEEAMRK 301 (517)
Q Consensus 279 lk~l~e~~~k~rqkl----ad~Eal~r 301 (517)
++.+++...+|.++. ..+++++.
T Consensus 437 ~~~~~~~~~~Y~~~~~kg~~~~~vl~~ 463 (592)
T 1f5n_A 437 VQKLQDLKKKYYEEPRKGIQAEEILQT 463 (592)
T ss_dssp HHHHHHHHHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 444444555554433 35566633
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.81 E-value=2.8 Score=36.95 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHH---HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLED---QTHQLQKQVAT-------HKQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~---EieeLr~kL~s-------~eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
+|..+|..++++++.-+... ++..+.+++.++ +|.-|+++.+- -..+-+-+..|++.+..-++.+|.|
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~i--delk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELI--DKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555555554422222 222222222222 33444444443 2333344566666666666666665
Q ss_pred HHH
Q psy10797 344 NSR 346 (517)
Q Consensus 344 Nqr 346 (517)
|++
T Consensus 106 ~~~ 108 (110)
T 2v4h_A 106 FNK 108 (110)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
No 127
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.72 E-value=10 Score=32.23 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq 335 (517)
+..+...++.++..+......++++..+|..=|..++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333333
No 128
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.43 E-value=12 Score=40.32 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~Ek 354 (517)
.+..++-.|++++.+|..+.++-..++|.+...+
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~ 42 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAA 42 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666677777777777666666666554443
No 129
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.28 E-value=10 Score=39.64 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I 400 (517)
...+.|..+|+.+.++++++......... ...+-++....-++.|... -+.|+.++.-|+..++.+-..|
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~-------~lk~~~~q~~dndn~~~e~---s~eLe~~i~~lk~~V~~q~~~i 136 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVE-------LMRGDFAKANNNDNTFKQI---NEDLRSRIEILRRKVIEQVQRI 136 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHhhccchHHHHHH---HHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555554443332222 2222222222233444433 3456677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 401 RKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 401 ~kLeE~Er~L~~kLs~lEKEL 421 (517)
..|+-.-+.+..++..||..+
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666666666655
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.81 E-value=1.7 Score=35.75 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH 397 (517)
Q Consensus 328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~ 397 (517)
+-|++||. +.++|...++|..+|+.+|+.+..| .++.+..+.+++.|+.+++|..
T Consensus 13 ~~~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eL--------------Ek~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 13 ASIEGRGS-LRDLQYALQEKIEELRQRDALIDEL--------------ELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ------CH-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcccCCc-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 45777777 8889999999999999999876555 4556667778888888887753
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.65 E-value=14 Score=32.42 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE----KERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE----~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
-+++..+.|+.|+..++.+.......|...+. .-+.++..+..+|.+|..++..++.+-
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33555556666666666655555444444433 234466677788888887777776543
No 132
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=87.09 E-value=24 Score=36.97 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=15.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797 362 MTERIKSNQLHKLAREEKDTLREQVQA 388 (517)
Q Consensus 362 ~aEK~KAdQKyfaamreKdaLe~Evk~ 388 (517)
..+-.|+..+|..+-++.+......+.
T Consensus 149 ~~~l~KaKk~Y~~~cke~e~a~~~~~~ 175 (486)
T 3haj_A 149 LKEVEAAKKAHHAACKEEKLAISREAN 175 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777666655544433
No 133
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.98 E-value=4.9 Score=32.80 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA 435 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~ 435 (517)
|..++..++|........+...+........++++.-..|+.++..+|.++......+.....++
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555555555555555555555555555544444443333333
No 134
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=86.91 E-value=34 Score=36.11 Aligned_cols=23 Identities=35% Similarity=0.198 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 340 MQEQNSRLLQQLREKDDANFKLM 362 (517)
Q Consensus 340 mQeQNqrklqqL~EkED~n~KL~ 362 (517)
++...+.+..++..++..+..+.
T Consensus 131 l~~khq~l~~EL~~~e~~i~~v~ 153 (450)
T 3r6n_A 131 KQEAFSIRMSQLEVKEKELNKLK 153 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchHHHHHHH
Confidence 34444555555666666555553
No 135
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=86.59 E-value=19 Score=32.91 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr 346 (517)
+|+.-++.++..+..-+-.+ +=+-..+..-...++.|++.....+++...|-+|++++..-|++.+.+..+
T Consensus 15 ~L~~D~~s~~~eleEnqeEL--~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEEL--EIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 55555666655544322222 223366666667788999999999999999999999999999887766544
No 136
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.05 E-value=17 Score=31.91 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN 358 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n 358 (517)
|...+.+.|.-|++.++.++.....+.. +.+-++..-...++..+..+...+++.|-.|
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777777776665532 3333334444445555555555555555443
No 137
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.83 E-value=22 Score=38.04 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr 346 (517)
.+..+++|+..++.+.+....-..=|..|...|+..|.|...
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 445566666666655443322222233344445554444333
No 138
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=85.81 E-value=13 Score=30.60 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
...+|..-|..+++-|+....+.+.+ +.+.|+...++-.|-...-+-|..+|.-|-+|+.|+.+-++.++
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~---i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDT---IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33344444444444444433333333 34566777777777777788899999999999999988887664
No 139
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=85.23 E-value=4.3 Score=43.46 Aligned_cols=94 Identities=10% Similarity=0.061 Sum_probs=73.9
Q ss_pred cchhhhHHHHHHhHhhhhc-CCcccccccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797 243 CTSAFQMSFYKSRWFDFRS-LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK 320 (517)
Q Consensus 243 ~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~e 320 (517)
..-..+++.|+.+|+.++. +.++.+++..-- -++++++.++.-+..+-+.. +|+.++|.-+.+.|..-=..+..++
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S--~eLe~ri~yIK~kVd~qi~~IrvLq 138 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVS--TELRRRIVTLKQRVATQVNRIKALQ 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999 888877776654 56777888888887766665 7777888888877764447788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyE 338 (517)
.-.+.+..||..|+.+..
T Consensus 139 ~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 139 NSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999999988754
No 140
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=84.43 E-value=54 Score=36.19 Aligned_cols=85 Identities=8% Similarity=0.142 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHH-H-HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDD-ANFKLMTERIKSNQLHKL-A-REEKD-TLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED-~n~KL~aEK~KAdQKyfa-a-mreKd-aLe~Evk~Lk~QlekQ~e~I~k 402 (517)
..+|+.+-.-++.|..+-..++.++.+..| -..+|+.+..+-.-..+. + .++.+ ....-...+...+.+|..++.+
T Consensus 555 ~~~L~~~l~~l~~l~~~R~~~~~~lk~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~ 634 (704)
T 2xs1_A 555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKN 634 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777778888876543 334556554331110111 1 11221 1333334455666778888888
Q ss_pred HHHHHHHHH
Q psy10797 403 LEEKERFLQ 411 (517)
Q Consensus 403 LeE~Er~L~ 411 (517)
+.+....+.
T Consensus 635 i~~~~~~f~ 643 (704)
T 2xs1_A 635 IQVSHQEFS 643 (704)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 141
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.31 E-value=18 Score=30.57 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
+.+..+...++.++..+.......+.+..+|..=|..++.-++.
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333333
No 142
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.10 E-value=2.1 Score=38.90 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I 400 (517)
|+..-..++++...++..+..|+.++..-..+|
T Consensus 87 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 87 ANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677777777666666554333333
No 143
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=83.94 E-value=3.6 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEE 324 (517)
Q Consensus 294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~e 324 (517)
.+++...+++.++.+++.++.+++..+.+.+
T Consensus 63 d~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~ 93 (341)
T 3fpp_A 63 DPEQAENQIKEVEATLMELRAQRQQAEAELK 93 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777666555533
No 144
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=83.34 E-value=5.9 Score=39.00 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10797 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEE 323 (517)
Q Consensus 294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~ 323 (517)
.+++...+++.++++++.++.+++..+.+.
T Consensus 64 d~~~~~~~l~~~~a~l~~~~a~l~~a~~~~ 93 (369)
T 4dk0_A 64 DSTTQINTLNTRKAALASYQAQLVARKTAY 93 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777776666665544443
No 145
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=82.97 E-value=0.53 Score=49.08 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=30.5
Q ss_pred cccccccccccc-----------c--cccccchhhHHHHHhhhc----------cCCCCCCC
Q psy10797 467 EFSAKFVNFRRK-----------S--YFFVEFLDCLRTRYETRQ----------RKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K-----------~--CgHvFC~~CIq~rl~tR~----------RKCP~C~~ 505 (517)
.--|.||-...- + |+|.|=..|+.+|+.+-. ..||-|+.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 357999986321 1 999999999999998633 47999998
No 146
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=82.93 E-value=6.3 Score=36.14 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTHQ 311 (517)
Q Consensus 295 d~Eal~rL~~lE~Eiee 311 (517)
|..+.++|+.+=.++.+
T Consensus 41 Da~vrq~Ia~LP~eVsd 57 (152)
T 4fla_A 41 DATVRQKIASLPQEVQD 57 (152)
T ss_dssp HHHHHHHHHTSCGGGTC
T ss_pred hHHHHHHHHcCCccccC
Confidence 44455666555555443
No 147
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.56 E-value=23 Score=31.17 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE----KERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE----~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
.+++..+.|+.|+..++.+.......|...+. .-+.++..+..+|.+|..++..++.+-
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655555444444443 234566677788888887777776543
No 148
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.41 E-value=8.6 Score=31.87 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+.+.|....++-.|-....+-|..+|.-|-+|+.|+.+-++.++
T Consensus 37 i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 37 LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34457777777777777888999999999999999988887765
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.37 E-value=0.93 Score=38.35 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred cccccccccccccc-----c----ccccchhhHHHHHhhhcc----CCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----Y----FFVEFLDCLRTRYETRQR----KCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----C----gHvFC~~CIq~rl~tR~R----KCP~C~~ 505 (517)
..++|++|.+|..+ | .|.||.+|-+..|+.... -||.-.+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k 66 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence 35799999999888 4 799999999999976432 4666555
No 150
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.19 E-value=22 Score=30.08 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR 376 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam 376 (517)
|..++.+-++|...|..++++.+.+-.||.....--+.+..+-.+...+..+..-..+-+..|+--.+..|.-+.
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333333333333333333333333333333333
No 151
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=82.14 E-value=35 Score=32.39 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 348 lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
..++........+...+-.|+..+|+.+-++.+........+
T Consensus 122 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~ 163 (305)
T 2efl_A 122 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455566667778888888888887776655433
No 152
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=81.59 E-value=64 Score=35.03 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy10797 408 RFLQTVLTNAEKELH 422 (517)
Q Consensus 408 r~L~~kLs~lEKEL~ 422 (517)
++++.....+.+++.
T Consensus 405 ~~~~a~~d~~~~~~s 419 (551)
T 2b5u_A 405 NNKQAAFDAAAKEKS 419 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccc
Confidence 334444444444444
No 153
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.36 E-value=0.77 Score=44.64 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=31.1
Q ss_pred ccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~ 505 (517)
.-.|.+|+.-.-- |+|.|=..|++.++++| .++||.|+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3468888874222 88999999999999876 469999999
No 154
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=81.25 E-value=7 Score=35.97 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797 276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK 320 (517)
Q Consensus 276 r~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~e 320 (517)
+.++++.++.+.-..+....++...++..+|.+...|.......+
T Consensus 9 e~~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~~e~~i~e 53 (146)
T 2xnx_M 9 EKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQ 53 (146)
T ss_dssp THHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333344555555555555544443333
No 155
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=81.19 E-value=42 Score=33.54 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------------H
Q psy10797 320 KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ-------------V 386 (517)
Q Consensus 320 eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E-------------v 386 (517)
-++..++..|++..-+.|++.=....+++++... ..| ||.++|...-++-|.+... .
T Consensus 100 ~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~--------~l~--KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~ 169 (279)
T 3qwe_A 100 YQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQ--------ALR--RAQLQYVQRSEDLRARSQGSPEDSAPQASPGPS 169 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHTCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 3778889999999999999977766666655433 223 3556888877766644321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
+.+.+....-.+...|.++.+..++..+..++++-..+
T Consensus 170 K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL 207 (279)
T 3qwe_A 170 KQQERRRRSREEAQAKAQEAEALYQACVREANARQQDL 207 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233456666667777777777766654333
No 156
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=81.19 E-value=18 Score=30.45 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy10797 340 MQEQNSRL 347 (517)
Q Consensus 340 mQeQNqrk 347 (517)
||..|.|+
T Consensus 11 mq~LNdRl 18 (93)
T 3s4r_A 11 LQELNDRF 18 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 157
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=79.96 E-value=59 Score=35.82 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=9.3
Q ss_pred ecchhhhHHHHHHhHhhhhc
Q psy10797 242 ICTSAFQMSFYKSRWFDFRS 261 (517)
Q Consensus 242 ~~~a~~~~~al~~~l~~~~~ 261 (517)
+...+.++..+...-..+..
T Consensus 420 l~~~~~~v~~l~~~~~~L~~ 439 (863)
T 1sjj_A 420 LAAHQDRVEQIAAIAQELNE 439 (863)
T ss_dssp HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455555544444443
No 158
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=79.64 E-value=4.8 Score=30.83 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
+.|.+.++++|.+|++|...+...+..+.++..||+.+
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999988764
No 159
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=79.56 E-value=44 Score=31.88 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy10797 323 EEALLNEMEV 332 (517)
Q Consensus 323 ~eALlsEIEs 332 (517)
.+.+..||..
T Consensus 152 ~~~f~~el~~ 161 (326)
T 3kbt_A 152 FRDFARETGA 161 (326)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 160
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.50 E-value=3.8 Score=44.49 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.4
Q ss_pred hcCCCCC
Q psy10797 105 AGTLDET 111 (517)
Q Consensus 105 ~~~~~~~ 111 (517)
-|..++.
T Consensus 134 ~GDy~~~ 140 (575)
T 2i1j_A 134 HGDHNPA 140 (575)
T ss_dssp HCSCCTT
T ss_pred hcCCChh
Confidence 3655543
No 161
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.37 E-value=27 Score=36.75 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy10797 418 EKELHLRNQAM 428 (517)
Q Consensus 418 EKEL~~lkqal 428 (517)
+.++..++..+
T Consensus 104 ~~~i~~l~~~~ 114 (409)
T 1m1j_C 104 ENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 162
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=79.28 E-value=30 Score=37.35 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
-+.+|++-+.|+++.++..+..++++++-+.|+
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~ 39 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAAN 39 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555444444
No 163
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=79.23 E-value=11 Score=31.15 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVA-------------THKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~-------------s~eqe~eALlsEIEsIgqAyEdm 340 (517)
...+|+.+|.+++.|..++. .+.++.+.+..|++....-|+.+
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777664 22344444455555555555543
No 164
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.08 E-value=28 Score=28.85 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM 362 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~ 362 (517)
.++.++.++..|+..++..+..-.-|-.....+.+-..+++.| +++.+++..+|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~ 69 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELL 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHH
Confidence 3445555555555555544443333333333333334444333 666666666553
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.86 E-value=21 Score=33.02 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
++.++.+|...++.+.+..+.+..|+.++.-.+
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444443333
No 166
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.48 E-value=11 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
.++..|..++..|-.+++++..+..+|-+++. +|.++...-|.|+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~---~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ---AAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 46778888888888888888888888888776 7777766666654
No 167
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=77.45 E-value=68 Score=32.86 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=91.8
Q ss_pred cceeecccCcceee---eecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHH------Hhh-----
Q psy10797 227 HCFDIFSLTSTLFV---SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDE------RKK----- 292 (517)
Q Consensus 227 ~c~~i~~l~~~~~~---~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~------rqk----- 292 (517)
|...||.||..-.+ +-.-.+.|..+|+.=|..+..+|... ....++.-|..-.+...+. +..
T Consensus 94 p~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~----~s~~~~~FL~~~~~~~w~~~~r~~~~~~~~g~~ 169 (386)
T 4akv_A 94 TVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLS----QYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGAS 169 (386)
T ss_dssp SSSCCCCCCCCC------CCTTTHHHHHHHHHHHHHHTCTTGG----GCHHHHHHHSCCCSHHHHHHHHHHHTCSCCGGG
T ss_pred CCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhh----CCcHHHHHhCCCChhhHHHhhhhccCCCccchH
Confidence 44455656554332 23445788999999999999999873 3344444443211111000 000
Q ss_pred ----c-------CcHHHHHH-------HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH-----------
Q psy10797 293 ----L-------ADEEAMRK-------IKQLEDQTHQLQKQVATHKQE-EEALLNEMEVTGQAFEDMQE----------- 342 (517)
Q Consensus 293 ----l-------ad~Eal~r-------L~~lE~EieeLr~kL~s~eqe-~eALlsEIEsIgqAyEdmQe----------- 342 (517)
+ ...|+..+ +..++..+..|....+..-+. ...+-.|+..+|.++.++-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ 249 (386)
T 4akv_A 170 FLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSE 249 (386)
T ss_dssp GGGTSBCCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCH
T ss_pred HHHHhcCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 1 12333333 344455554555443332211 23455566666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 343 QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF 409 (517)
Q Consensus 343 QNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~ 409 (517)
...+-+..+++..+.+.++..+-++.+.. .+.+-......-+..++..+......+++.+|.+|.
T Consensus 250 ~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~--~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl 314 (386)
T 4akv_A 250 ALNSAISHTGRTYEAIGEMFAEQPKNDLF--QMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRM 314 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999888776655433 333333333333333444444444444555555443
No 168
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.36 E-value=11 Score=33.50 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk 390 (517)
.+.|..||+.+-..++.+....++-+.++ .+.+..|-+|-.-..+--..+..+.+-|..++..++
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql---~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQL---KGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 233334433333333222233444444444444443
No 169
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=77.32 E-value=0.77 Score=37.80 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=20.5
Q ss_pred ccccccccccc-cc-------cccccchhhHHH
Q psy10797 467 EFSAKFVNFRR-KS-------YFFVEFLDCLRT 491 (517)
Q Consensus 467 e~kC~iC~~r~-K~-------CgHvFC~~CIq~ 491 (517)
+..|++|.+.+ .+ |+|.||..|++.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 57899999642 22 999999999998
No 170
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=76.93 E-value=52 Score=31.28 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 333 IgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
+..--+++.....+.............+...+-.||..+|..+-++.+.+.......
T Consensus 100 l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 100 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333444445555555566677778888888888877776655443
No 171
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.91 E-value=11 Score=32.10 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
+.+..||.+...|+.+++.+.++.+.+..|++.+.+.|+++
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55568889999999999999999999999999999988875
No 172
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=76.66 E-value=21 Score=29.16 Aligned_cols=59 Identities=32% Similarity=0.451 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 343 QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 343 QNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
||..+..++.++++.+.+ |..=+-+|+..+.|..+.=.+|++....++....+++|.+.
T Consensus 4 QNKeL~~kl~~Kq~EI~r---------------------LnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFE---------------------LKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 566666666655554433 33455667777777777777777777777777777777654
No 173
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.66 E-value=30 Score=28.33 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
+.||..++......|+.+++.|+.+++.+...-.+++..-+.+...|+.-=-+|..+++.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666777777777777777777777766655555544444444444334444454444
No 174
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=76.17 E-value=44 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN 344 (517)
.+...|+..++.+......+..+.+.+...++++...|
T Consensus 29 ~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n 66 (155)
T 2oto_A 29 HENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQR 66 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444443333333344444444444444443
No 175
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=76.11 E-value=19 Score=33.32 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHHHHhHhhhhcCCcccccccc--cHHHHHHHHHHHhhhHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy10797 249 MSFYKSRWFDFRSLSDSASNIYG--SLEFRKFACVVRDSKRDERKKLAD-EEAMRKIKQLEDQTHQLQKQVATHKQEEEA 325 (517)
Q Consensus 249 ~~al~~~l~~~~~~~d~~~~i~~--e~elr~rlk~l~e~~~k~rqklad-~Eal~rL~~lE~EieeLr~kL~s~eqe~eA 325 (517)
|..|+.+|..+..+-.+++-++- ..+...-++++++.-+.+++.... .-+...+.+++..+.+++.+|+.+.-+.=-
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~ 101 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555555555543333222222 225556677777777666644322 235577888888888999998877655555
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 326 LLNEMEVTGQAFED 339 (517)
Q Consensus 326 LlsEIEsIgqAyEd 339 (517)
|..+...+.++-.+
T Consensus 102 Yak~~a~~~q~~~d 115 (158)
T 3tul_A 102 YAQAEAAVEQAGKE 115 (158)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55554444444444
No 176
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=75.97 E-value=55 Score=31.43 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHH----hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVA----THKQEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE 378 (517)
Q Consensus 304 ~lE~EieeLr~kL~----s~eqe~eALlsEI-EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamre 378 (517)
.+....+.||.++. ..++..+-|..|+ ..+++-.++++++..-.+.++.++-..+..-+-+++. -|. -+-
T Consensus 74 ~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~---p~~--eel 148 (243)
T 2a01_A 74 NLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLS---PLG--EEM 148 (243)
T ss_dssp HHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCC---SST--HHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hHH--HHH
Confidence 34445555555544 4555566666666 4556666666666666666665544333332222111 011 122
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 379 KDTLREQVQALSLQIEA 395 (517)
Q Consensus 379 KdaLe~Evk~Lk~Qlek 395 (517)
++.+...+..++.++.-
T Consensus 149 r~kl~~~veelk~~l~P 165 (243)
T 2a01_A 149 RDRARAHVDALRTHLAP 165 (243)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555566655543
No 177
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=75.46 E-value=2 Score=33.17 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=28.9
Q ss_pred ccccccccccccc-------ccc---ccchhhHHHHHhh-hccCCCCCCC
Q psy10797 467 EFSAKFVNFRRKS-------YFF---VEFLDCLRTRYET-RQRKCPKCNA 505 (517)
Q Consensus 467 e~kC~iC~~r~K~-------CgH---vFC~~CIq~rl~t-R~RKCP~C~~ 505 (517)
+-.|.||.+...+ |.| .|=..|+++|+.. +.+.||.|+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~ 55 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCC
Confidence 3468888764322 545 6778899999986 4689999986
No 178
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=75.15 E-value=74 Score=32.15 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=78.7
Q ss_pred ccc-eeecccCcceee---eecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHH------Hhh---
Q psy10797 226 YHC-FDIFSLTSTLFV---SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDE------RKK--- 292 (517)
Q Consensus 226 ~~c-~~i~~l~~~~~~---~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~------rqk--- 292 (517)
+|. ..||.||.--.+ +-.-.+.|..+|+.=|..+..+|.. .....++.-|..-.+...+. +..
T Consensus 72 ~p~~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l----~~~~~~~~FL~~~~~~~w~~~~r~~~~~~~~g 147 (366)
T 3dyt_A 72 FGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVI----SESEVFQQFLNFRDEKEWKTGKRKAERDELAG 147 (366)
T ss_dssp HTTTSCCCCCC-----------CHHHHHHHHHHHHHHHHTCTTG----GGSHHHHHHHHCSSHHHHHHHHHHHHTCCCCG
T ss_pred CCCcCcCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhh----hCCcHHHHhhCCCchhhHHHHhhhhccCcccc
Confidence 344 556666654433 2344577899999999999999976 44455555554211111110 000
Q ss_pred ------c-------CcHHHHHH-------HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH---------
Q psy10797 293 ------L-------ADEEAMRK-------IKQLEDQTHQLQKQVATHK-QEEEALLNEMEVTGQAFEDMQE--------- 342 (517)
Q Consensus 293 ------l-------ad~Eal~r-------L~~lE~EieeLr~kL~s~e-qe~eALlsEIEsIgqAyEdmQe--------- 342 (517)
+ ...|+..+ +..++..+..|....+..- .....+-.+...+|+++.++-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 227 (366)
T 3dyt_A 148 VMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQG 227 (366)
T ss_dssp GGGGGGEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred hHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1 11233333 3455555555544444322 2234455667777777766654
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797 343 --QNSRLLQQLREKDDANFKLMTERIKSN 369 (517)
Q Consensus 343 --QNqrklqqL~EkED~n~KL~aEK~KAd 369 (517)
...+-+.++++.-+.+.++..+-++.+
T Consensus 228 ~~~L~~al~~l~~~~~~i~~l~~~qa~~d 256 (366)
T 3dyt_A 228 ETDLNDAITEAGKTYEEIASLVAEQPKKD 256 (366)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788999999999999998887776
No 179
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=75.00 E-value=58 Score=30.89 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 320 KQEEEALLNEMEVTGQAFEDMQEQNSRLL 348 (517)
Q Consensus 320 eqe~eALlsEIEsIgqAyEdmQeQNqrkl 348 (517)
-+..+++..||+.-+..++.+.....+++
T Consensus 148 l~~h~~l~~el~~~~~~i~~l~~~g~~L~ 176 (322)
T 1u4q_A 148 RKKHKRLEAELAAHEPAIQGVLDTGKKLS 176 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555554443
No 180
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=74.78 E-value=46 Score=29.58 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK 360 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~K 360 (517)
.++..++..||.+...|..+- .+.|..|=..-+.|=..+ .....+..++.++.+.+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E------~qry~~eka~AE~A~~~L-a~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQE------EARFNEERAQADAARQAL-AQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665532 222222222222222222 2224455555555555554
No 181
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.55 E-value=43 Score=29.17 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLH 448 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~q 448 (517)
..||..||=...-|++|-.+|.=|++-.+..+..++|.-..++ +++......++..++....+....+.|+.+
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~-------Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESR-------RQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777877777777777777777776666666666544343 333333333444444445555555666666
Q ss_pred HH
Q psy10797 449 LV 450 (517)
Q Consensus 449 Le 450 (517)
|.
T Consensus 81 L~ 82 (103)
T 4h22_A 81 LK 82 (103)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 182
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.64 E-value=37 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
++...+++|+...+...+....++.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~ 27 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEA 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444433
No 183
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.29 E-value=26 Score=29.31 Aligned_cols=62 Identities=26% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
|++-+..+.-++|++.++--++.-+-.||.....|..+.. .|+..|+.+++-....|.+|.+
T Consensus 14 ~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK-------~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 14 QEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATK-------AEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhhHHHHHHHHH
Confidence 4555556667888888888888888888888887777766 4666666666666666665554
No 184
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=71.62 E-value=61 Score=29.61 Aligned_cols=50 Identities=26% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
-+....|+.=++.|.+.++.-...+..|++-...+...+..+++.+...+
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK 127 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666555555555555554443
No 185
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=71.14 E-value=15 Score=31.27 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 352 ~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql 393 (517)
...|....++-.|-...-+-|..++.-|-+|+.|+.+-++.+
T Consensus 47 ~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 47 TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555666666778888888888888887776654
No 186
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=70.81 E-value=28 Score=30.49 Aligned_cols=67 Identities=24% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE-LHLRNQAMDLNKRKAIESAQSAAD 444 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE-L~~lkqale~~kkk~~E~sq~~~d 444 (517)
.|.+.+.|+.|+.....|+.- -.+||++.++.....=.++.|+ +..++.++...+.|+.++.+..++
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~i---ArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVT---ARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777666665433 3445666666655433444443 334555555556555555544443
No 187
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.72 E-value=47 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLT 415 (517)
Q Consensus 386 vk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs 415 (517)
++.|+......-++|+.||...+.|..++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555544444443
No 188
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=70.07 E-value=13 Score=30.44 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA 357 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~ 357 (517)
+|.-+.+|+.+++-.+...+.|+..|-.-.+..+.++.+...+..++.+.++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445555555666666666666666666666777777777777777666653
No 189
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.88 E-value=35 Score=29.26 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhHH
Q psy10797 274 EFRKFACVVRDSKRD 288 (517)
Q Consensus 274 elr~rlk~l~e~~~k 288 (517)
+|..+|..+++++..
T Consensus 6 ~L~~~L~~aEeaL~~ 20 (94)
T 3jsv_C 6 DLRQQLQQAEEALVA 20 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 190
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.39 E-value=49 Score=29.51 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHhhhHHHHhhcCcHHHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 269 IYGSLEFRKFACVVRDSKRDERKKLADEEAM---------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 269 i~~e~elr~rlk~l~e~~~k~rqklad~Eal---------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
+.++.+-+.--.-+++.+.+.+..+.+.|++ .--++|+++...-+++++.++.+...|+.++..-+...|.
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 340 MQEQNSRLLQQLREKD 355 (517)
Q Consensus 340 mQeQNqrklqqL~EkE 355 (517)
+...|.-+-..+....
T Consensus 97 lr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 97 LRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHhhchhhhhHhhhcc
No 191
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.26 E-value=12 Score=38.94 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
.+|++++.+++.|+.+..+++++.+.+..|++.+.+-+.+.+....++..++.|...
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456788888888888888888888888888888888888888777777777776543
No 192
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.52 E-value=46 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEAMHT 398 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~QlekQ~e 398 (517)
|..+......+..+++.+..++.....
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 193
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=68.38 E-value=11 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
||+.|++++++++++..+|.-||..+.|.|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455666666666777777777777666654
No 194
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=67.98 E-value=46 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
..+......|+..+..+.++.+.|...++.+.++-+.+.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666665544
No 195
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.97 E-value=20 Score=31.18 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10797 270 YGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 270 ~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eAL 326 (517)
+-=-+|+.++..+++.-.+-|+. ....-.++..|+.++++|+.....+.+++++-
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~--~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLE--SKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33336667777776555443333 22334788888888888888777777775543
No 196
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.23 E-value=55 Score=27.07 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 379 KDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNA 417 (517)
Q Consensus 379 KdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~l 417 (517)
...++.+++.++..+++.......+++.-..+.....++
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444554444443333333
No 197
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.44 E-value=1.4e+02 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 384 EQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 384 ~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
..++.|+..++.|...|+|||.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554
No 198
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=65.38 E-value=80 Score=28.61 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 413 VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI 451 (517)
Q Consensus 413 kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLee 451 (517)
+|..++..|..++....+|...+.++-.-.++++.+|+.
T Consensus 123 rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~ 161 (175)
T 4abx_A 123 ALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAG 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 556666666666666555543445555555556655553
No 199
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.41 E-value=32 Score=26.76 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
+.+|+.+.+.++.+++.|..||..+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 200
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=64.11 E-value=1.4e+02 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 315 QVATHKQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 315 kL~s~eqe~eALlsEIEsIgqAyEdm 340 (517)
.++.+-.++.....||..-.+|.+..
T Consensus 141 ~~~~~~~~~~~~~~e~~~k~~a~~af 166 (373)
T 3hhm_B 141 EYDRLYEEYTRTSQEIQMKRTAIEAF 166 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHH
Confidence 33344444444445555444554443
No 201
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=62.39 E-value=67 Score=26.67 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklq 349 (517)
..||+-++.+-.+|.+++.
T Consensus 5 ~gmgkevEnLi~EN~eLl~ 23 (77)
T 2w83_C 5 EFMGREVENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4566666666666666553
No 202
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=62.19 E-value=57 Score=25.79 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 403 LEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453 (517)
Q Consensus 403 LeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~ 453 (517)
-+|.|.-++.++.++..+...-..++...+..+.|+.+..+.|+.+|+.++
T Consensus 26 r~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677788888888777776666776667778888888888888877543
No 203
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=61.05 E-value=90 Score=28.18 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~ 352 (517)
.+.+..+|+.+......+......+|..+.
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566555555555555555555543
No 204
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=60.86 E-value=1.2e+02 Score=29.04 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAM 396 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ 396 (517)
.+..++..|+.+++..
T Consensus 136 ~~~~~~~~L~~e~~~l 151 (213)
T 1ik9_A 136 ENQAKNEHLQKENERL 151 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 205
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.64 E-value=55 Score=31.25 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
|+.+..|...|..+++.++++.++|..+|.++.+.-...+.++.+....+.=.+|
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~D 76 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKD 76 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHH
Confidence 4556667777777777777777777777777776666666655544443333333
No 206
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=60.29 E-value=50 Score=30.13 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
+-.++|+.|++|.++...++...-++.+.|+..|+..
T Consensus 89 eQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777777777777777777666666666666543
No 207
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=60.28 E-value=39 Score=31.84 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTHQLQKQ 315 (517)
Q Consensus 295 d~Eal~rL~~lE~EieeLr~k 315 (517)
+++...+++.++++++.++..
T Consensus 55 ~~~~~~~l~~a~a~l~~a~a~ 75 (277)
T 2f1m_A 55 PATYQATYDSAKGDLAKAQAA 75 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444433
No 208
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.93 E-value=58 Score=34.32 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
.+...++-++.++-..++.+++.++++-+++.++|
T Consensus 27 ~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 27 VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666555555
No 209
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.64 E-value=74 Score=26.30 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEK---ERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~---Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
++..+.+..+...+..+++.....+..++.+ |-.++ ..+|.++..+++.++.
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R---~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR---EEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHH
Confidence 3333444444444444444444444443332 22333 5666666666555543
No 210
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.02 E-value=39 Score=35.47 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 390 SLQIEAMHTAIRKLEEKERFLQTVLTNA 417 (517)
Q Consensus 390 k~QlekQ~e~I~kLeE~Er~L~~kLs~l 417 (517)
.+.+....+.|..|++.-..+++++..+
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444433344444443
No 211
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.98 E-value=87 Score=27.24 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 350 QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 350 qL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.+++.||+-.|.|.--+.-|+ +|.++.=||..|+-.++.+.+.+.++.-
T Consensus 3 sL~EvEEKyrKAMVsnAQLDN-------EKsal~YqVdlLKD~LEe~eE~~aql~R 51 (103)
T 4h22_A 3 SLAEVEEKYKKAMVSNAQLDN-------EKTNFMYQVDTLKDMLLELEEQLAESRR 51 (103)
T ss_dssp -----CCTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777766555443 5556666777777777777766665544
No 212
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.98 E-value=94 Score=27.31 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 389 LSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 389 Lk~QlekQ~e~I~kLeE 405 (517)
++.+.+.....|+.|.+
T Consensus 36 w~~k~E~~k~qV~~L~~ 52 (112)
T 1x79_B 36 IKQSSEDSSHQISALVL 52 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 213
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.75 E-value=73 Score=34.16 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
.+.+...++-++.++-..++.+++.++++-+++..||
T Consensus 27 ~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 27 DSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777777777777777776666666
No 214
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.62 E-value=58 Score=34.90 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 327 lsEIEsIgqAyEdmQeQ 343 (517)
..+|-.+.+.|++++.+
T Consensus 69 ~~~~~~ld~~~r~~~~~ 85 (501)
T 1wle_A 69 LPGIISTWQELRQLREQ 85 (501)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 215
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=58.33 E-value=1.4e+02 Score=29.76 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
+++....-++++.+.+..++++.+-..+..+.-+-+++...+..+.|++|.-.=|...|.
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D~~lk~ 231 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGDEVLRR 231 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444456788888888888888888888888888888777777777777666666655
No 216
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.20 E-value=79 Score=26.21 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
|....+....+.+..|++.|+.++|.+.-.|.++++.-+.+-..|
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888888888888877666554333
No 217
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.57 E-value=62 Score=26.87 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=21.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~ 352 (517)
+|..+++.++.|...|-..||...--.++|+++....+.++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555555555555555555553
No 218
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=57.35 E-value=2.1e+02 Score=30.72 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy10797 305 LEDQTHQLQKQVATHKQ 321 (517)
Q Consensus 305 lE~EieeLr~kL~s~eq 321 (517)
....+.+|+..|+.+++
T Consensus 93 V~~dl~~Le~~l~~isn 109 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQ 109 (461)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 33444455555544443
No 219
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.29 E-value=83 Score=26.14 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 375 AREEKDTLREQVQALSLQI 393 (517)
Q Consensus 375 amreKdaLe~Evk~Lk~Ql 393 (517)
+....+.+..+++.+..++
T Consensus 18 l~~~~~~l~~q~~~l~~~~ 36 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLEL 36 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433
No 220
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.22 E-value=35 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 408 RFLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 408 r~L~~kLs~lEKEL~~lkqale~~ 431 (517)
..++..+..+|.++..+++.++..
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777766666543
No 221
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=56.88 E-value=18 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIE 331 (517)
.++..++.+...|+.+...+++...++-+|++
T Consensus 16 skL~~Ae~~k~~Leek~~~~e~~~~~~~~Ele 47 (130)
T 3cl3_D 16 SRLEAATKECQALEGRARAASEQARQLESERE 47 (130)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444444444444444444443
No 222
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.36 E-value=30 Score=36.08 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy10797 351 LREKDDANFK 360 (517)
Q Consensus 351 L~EkED~n~K 360 (517)
+...-..+.|
T Consensus 47 l~~~~n~~sk 56 (421)
T 1ses_A 47 VQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 223
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=56.29 E-value=2e+02 Score=30.25 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALSLQ 392 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk~Q 392 (517)
-++|.+++.|.++.+..+..+...
T Consensus 132 ~~khq~l~~EL~~~e~~i~~v~~~ 155 (450)
T 3r6n_A 132 QEAFSIRMSQLEVKEKELNKLKQE 155 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHchHHHHHHHHH
Confidence 357777777777777777666544
No 224
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.05 E-value=2.4 Score=43.07 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred ccccccccccc---------cccccchhhHHHHH------hhhccCCCCCCC
Q psy10797 469 SAKFVNFRRKS---------YFFVEFLDCLRTRY------ETRQRKCPKCNA 505 (517)
Q Consensus 469 kC~iC~~r~K~---------CgHvFC~~CIq~rl------~tR~RKCP~C~~ 505 (517)
.|..|...+.- ||++||..|...++ ....|-|-.|-.
T Consensus 377 ~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 377 MCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ----------------------------------------------------
T ss_pred cCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 57778874422 99999999997654 334678888865
No 225
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.02 E-value=53 Score=27.08 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 409 FLQTVLTNAEKELHLRNQAMDLN 431 (517)
Q Consensus 409 ~L~~kLs~lEKEL~~lkqale~~ 431 (517)
.++..+..+|.+|..++..++.+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777666666544
No 226
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.72 E-value=91 Score=26.10 Aligned_cols=7 Identities=43% Similarity=0.420 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy10797 413 VLTNAEK 419 (517)
Q Consensus 413 kLs~lEK 419 (517)
+|.+.++
T Consensus 46 kL~eae~ 52 (81)
T 1wt6_A 46 QLREAEA 52 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 227
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=55.21 E-value=61 Score=26.92 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE-LHLRNQAMDLNKRKAIESAQSAA 443 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE-L~~lkqale~~kkk~~E~sq~~~ 443 (517)
|.+...|+.|+.....|+.- -.++|++.++.....=.++.|. +..++..+...+.|+.++.+..+
T Consensus 4 M~~l~eLq~e~~~~E~QL~~---A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVT---TRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665554444322 2345566555554333333333 33444444555555555444433
No 228
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=54.95 E-value=86 Score=25.59 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 407 ERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 407 Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
.+.++..+..+|.+|..++..++.+.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888777777776543
No 229
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.65 E-value=58 Score=34.30 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREEKDTLREQVQALS 390 (517)
Q Consensus 369 dQKyfaamreKdaLe~Evk~Lk 390 (517)
|+++..+..+.+.|.++...+.
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~s 58 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIA 58 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 230
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.63 E-value=9.5 Score=25.58 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
|.+|+++.+.++++..+|.-||..++
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 44666777777777777777776554
No 231
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=53.27 E-value=1.7e+02 Score=28.53 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 322 EEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 322 e~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
..++|.+||..-+.-++++.....++
T Consensus 49 kh~~le~El~a~e~~v~~v~~~g~~L 74 (283)
T 3pe0_A 49 SYSALMRELELKEKKIKELQNAGDRL 74 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444443333333
No 232
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.14 E-value=48 Score=27.14 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 386 vk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
++.|+..+.+-.+.|++.++.-+.+..+|...+.+++.++..++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554455555555554444555555555555555554443
No 233
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.12 E-value=5.7 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred cccccccccc--------cccccchhhHHHHHhhhccCCCCCC
Q psy10797 470 AKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCN 504 (517)
Q Consensus 470 C~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~ 504 (517)
|--|...+.+ |.+.||.+| |-.+..--..||.|.
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGCI 59 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTTC
T ss_pred ccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCCC
Confidence 5455555432 999999999 666677778999994
No 234
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.01 E-value=55 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsI 333 (517)
+|+.+.+.++.+++.|.+||..+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444333
No 235
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.92 E-value=0.85 Score=37.45 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.0
Q ss_pred cccccccccccc---------cccccchhhHHHHH-------hhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-------ETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-------~tR~RKCP~C~~ 505 (517)
-.|..|...|-- ||++||..|...++ ....|-|-.|-.
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~ 75 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYL 75 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHH
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHH
Confidence 468888876532 99999999987652 345677766644
No 236
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.36 E-value=27 Score=36.47 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
..|+.|+++|+.+.+.++++.+.+..|++.+.+.+.+.+....++..++.+..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467888888888888888888888888888888887777777777777766654
No 237
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.28 E-value=7 Score=40.69 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=30.0
Q ss_pred cccccccccccccc------cccccchhh---HHHHHhhhccCCCCCCC--CCCCc
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDC---LRTRYETRQRKCPKCNA--KANDY 510 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~C---Iq~rl~tR~RKCP~C~~--~~~Dv 510 (517)
=.++|++=..+.+. |.|+-|.+- ++-+-..+.-+||.|++ ...|+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 34889986665555 999988775 23333345569999999 44443
No 238
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.90 E-value=1e+02 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
..++.++++++.++..+......+.++|+.+.++.+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444
No 239
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.71 E-value=1.7e+02 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~ 359 (517)
++++++..|..|.+++...|+++.+|..+.+..-.+.|....
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566677777777777777777777666666443
No 240
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=51.49 E-value=35 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=16.1
Q ss_pred cccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797 268 NIYGSLEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 268 ~i~~e~elr~rlk~l~e~~~k~rqkl 293 (517)
+|..-++|+..+...+..+.-.+||+
T Consensus 3 ~M~~i~eLq~e~~~~E~QL~~A~QKL 28 (96)
T 2ic9_A 3 HMSTLKEVQDNITLHEQRLVTTRQKL 28 (96)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666776666666666665
No 241
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.91 E-value=27 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+++..+|.+++.|....+.+..+.+.|..|+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 242
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=50.91 E-value=1.5e+02 Score=27.12 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHH----HHHhcchhhhhccc
Q psy10797 440 QSAADLKLHLV----IIYTNGPARLEFGK 464 (517)
Q Consensus 440 q~~~dLk~qLe----el~Ek~~a~LEKLK 464 (517)
...++|+..+. +++++....+|.|+
T Consensus 155 ~~~e~lk~~l~Py~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 155 AHVDALRTHLAPYSDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 33455555543 45555555566665
No 243
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.83 E-value=30 Score=28.00 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
+.|..||.++.+|+...+.+..+++.|-.+|+.+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555554455444444444443
No 244
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.35 E-value=1.1e+02 Score=32.89 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHhhhHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797 271 GSLEFRKFACVVRDSKRDERKKL-ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331 (517)
Q Consensus 271 ~e~elr~rlk~l~e~~~k~rqkl-ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIE 331 (517)
.-.-+|+....+.+..++ +.+ .+.+...++-++.++...++.+++.++++-+++.++|.
T Consensus 42 D~~~ir~n~~~v~~~l~~--R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 42 DMESLCAYPEDAARALDL--RKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp CHHHHHHSHHHHHHHHHH--HTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHH--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556656666555544 223 22344567778888888888888888888777777764
No 245
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=49.69 E-value=2e+02 Score=28.23 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
.|+..+-.++.+++..+...-.++-.-++.|-.++
T Consensus 69 dklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E 103 (234)
T 3plt_A 69 DKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIE 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333333333333333333333333333333
No 246
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.43 E-value=60 Score=33.79 Aligned_cols=32 Identities=13% Similarity=0.351 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
..++-++.++-..++.+++.++++-+++.++|
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665
No 247
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.36 E-value=30 Score=29.52 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797 311 QLQKQVATHKQEEEALLNEMEVTG-QAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389 (517)
Q Consensus 311 eLr~kL~s~eqe~eALlsEIEsIg-qAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L 389 (517)
+|-.-|+..++|++++..|..... +.-++...+.+.-++++.-....+-.| -.+-++-|+..+.|+..|
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeL----------E~~h~kmKq~YEeEI~rL 80 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYER----------ELTHRKMKDAYEEEIKHL 80 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 444556677777777777776554 222344444444343333333333332 223355567777888888
Q ss_pred HHHHHH
Q psy10797 390 SLQIEA 395 (517)
Q Consensus 390 k~Qlek 395 (517)
+.+++.
T Consensus 81 r~eLe~ 86 (92)
T 3vp9_A 81 KLGLEQ 86 (92)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887764
No 248
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.46 E-value=1.4e+02 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy10797 439 AQSAADLKLHLV 450 (517)
Q Consensus 439 sq~~~dLk~qLe 450 (517)
..+.++|+.+++
T Consensus 89 ~~eKe~L~~ql~ 100 (110)
T 2v4h_A 89 VEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 333444444444
No 249
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.45 E-value=54 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+..++.++++|....+.++.+.+.|-.|+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 250
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=48.18 E-value=28 Score=24.14 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 382 LREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 382 Le~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
|+.+++.|++-+.+.++.+.+|+|.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777764
No 251
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.11 E-value=1.2e+02 Score=25.21 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+...+.++.+++.++..++.+.+.+..+++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333333333
No 252
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.07 E-value=84 Score=30.01 Aligned_cols=11 Identities=27% Similarity=0.157 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy10797 440 QSAADLKLHLV 450 (517)
Q Consensus 440 q~~~dLk~qLe 450 (517)
.-..||-..|-
T Consensus 72 ~i~~DL~e~LT 82 (190)
T 4emc_A 72 EVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHcc
Confidence 33344444443
No 253
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=47.66 E-value=73 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=15.1
Q ss_pred cccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797 268 NIYGSLEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 268 ~i~~e~elr~rlk~l~e~~~k~rqkl 293 (517)
+|..-++|+..+...+..+.-.+||+
T Consensus 3 ~M~~l~eLq~e~~~~E~QL~~A~QKL 28 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHEQRLVTTRQKL 28 (78)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666655
No 254
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.25 E-value=77 Score=25.54 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQ 343 (517)
..+..|.+|+.+++.++...+.+..|.+.+-.-.+.++..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555555444444444433
No 255
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=47.12 E-value=1.9e+02 Score=27.31 Aligned_cols=12 Identities=33% Similarity=0.177 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy10797 320 KQEEEALLNEME 331 (517)
Q Consensus 320 eqe~eALlsEIE 331 (517)
++.++.+..|++
T Consensus 136 Kk~Y~~~~~e~e 147 (301)
T 2efk_A 136 KRKFERDCREAE 147 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 256
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.02 E-value=1.1e+02 Score=26.38 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 373 KLAREEKDTLREQVQALSLQI 393 (517)
Q Consensus 373 faamreKdaLe~Evk~Lk~Ql 393 (517)
..+.++.+.|..|+..|+..+
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554443
No 257
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=47.01 E-value=1.5e+02 Score=26.18 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=27.7
Q ss_pred hhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 369 NQLHKLAREE-------KDTLREQVQALSLQIEAMHTA--------IRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430 (517)
Q Consensus 369 dQKyfaamre-------KdaLe~Evk~Lk~QlekQ~e~--------I~kLeE~Er~L~~kLs~lEKEL~~lkqale~ 430 (517)
++.|+..|.. ++.+...+..++.....-..+ ...+.+.-+.|+..+.+++.+|..+.+++..
T Consensus 16 ~~~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 16 ENLYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665 444555555554444332211 1124444555666777777777777777654
No 258
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.99 E-value=51 Score=34.32 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
.+...++-++.++-..++.+++.++++-+++.++|
T Consensus 26 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 26 VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34345555555555555555555555544444443
No 259
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.74 E-value=38 Score=25.90 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
+++..+.+.-++|-..|....++...|..||+.++
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555555666666666666554
No 260
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.65 E-value=1.3e+02 Score=25.21 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
+++.+-+.=+++-++.|.+- ..+...++.+++.|+...+.++.+.+.|..|+..+-..|-+
T Consensus 15 ~Y~~rR~rNN~AarrSR~kr-----k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKA-----KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444455555544332 12222333344444444444455555555555555544443
No 261
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.51 E-value=79 Score=33.87 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQ 385 (517)
Q Consensus 371 KyfaamreKdaLe~E 385 (517)
++..+..+.+.|.++
T Consensus 41 ~~r~~~~~~~~l~~~ 55 (485)
T 3qne_A 41 EWVKLRFDLDEHNKK 55 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 262
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=45.45 E-value=2.1e+02 Score=27.32 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=21.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 312 LQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 312 Lr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
+...+++.++..+.|..|-++|.+|+++..
T Consensus 68 adqa~~nv~eRek~l~kEk~si~~s~kef~ 97 (199)
T 2ap3_A 68 VKDLIKNADDRLKEFEKEEDAIKKSEQDFK 97 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777788888888888887754
No 263
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=45.06 E-value=39 Score=31.84 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
.+++.++.+++++++|+.++...+.++..+..|++.+
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888899999988888888888888887644
No 264
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.93 E-value=16 Score=31.21 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=31.3
Q ss_pred cccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
--|.||.+..-- |+---|.+|.+--...-+..||.|++
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt 66 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKT 66 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCC
Confidence 468999986221 99999999999877777789999998
No 265
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.58 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEE 324 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~e 324 (517)
.+++.-..|.|++.|+.++..++...+
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456666777777777777766665543
No 266
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=44.47 E-value=68 Score=32.24 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN 416 (517)
Q Consensus 383 e~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~ 416 (517)
..|+..+....+..+..+.-|.+....+...|+.
T Consensus 89 ~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf 122 (302)
T 2y3a_B 89 EKEMQRILLNSERLKSRIAEIHESRTKLEQDLRA 122 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhh
Confidence 4566666666666666666666655444444433
No 267
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.17 E-value=90 Score=24.14 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
+.+..|+.+++.|....+.+..+.+.|..|+..+...+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777665543
No 268
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=44.09 E-value=1.4e+02 Score=25.07 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL 351 (517)
+.-++-|..+.....+++.++
T Consensus 18 e~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444
No 269
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=44.01 E-value=1.9e+02 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370 (517)
Q Consensus 340 mQeQNqrklqqL~EkED~n~KL~aEK~KAdQ 370 (517)
..+....++.+..+..++...-+.||.|..-
T Consensus 95 aeEkL~~KME~~kEnReA~laal~erLkek~ 125 (143)
T 3ryc_E 95 AKEKLAQKMESNKENREAHLAAMLERLQEKD 125 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445567777888888888887778777543
No 270
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.84 E-value=1.4e+02 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 433 RKAIESAQSAADLKLHLVI 451 (517)
Q Consensus 433 kk~~E~sq~~~dLk~qLee 451 (517)
.++.++.++..+|+.++.+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666665553
No 271
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.44 E-value=66 Score=29.57 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE 405 (517)
+++.++..++++.+...+++.
T Consensus 67 ~~~~l~rdleasr~akk~~ea 87 (146)
T 2xnx_M 67 ELEAITREQEINRNLLGNAKL 87 (146)
T ss_dssp TTTTHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444443333
No 272
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=43.40 E-value=3.5e+02 Score=29.35 Aligned_cols=122 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA 395 (517)
Q Consensus 316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek 395 (517)
++-.++-+.+-..|-++|-|=+.+.+....+...++..+..-+.....|.-.|.+...++.++|..+ +.++..
T Consensus 337 ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~-------~n~~a~ 409 (602)
T 1cii_A 337 VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI-------RNQLSG 409 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred hhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD 444 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~d 444 (517)
-+.+|+.-+.++.....-....+.-....+..-+..-.+...++++.++
T Consensus 410 ~~~KiAE~KrK~dE~~aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe 458 (602)
T 1cii_A 410 INQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAG 458 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.40 E-value=55 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALL 327 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALl 327 (517)
++...++..++.+-.+|+.+++.++.+...|-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544443
No 274
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.03 E-value=1.3e+02 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT 381 (517)
Q Consensus 341 QeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda 381 (517)
|.=-.+++++..++|+.+..|..|..+-.+-.....+|.|.
T Consensus 40 q~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 40 QSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666677776666655544433333333333333
No 275
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.97 E-value=78 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe 322 (517)
-+.+-+.++.-|+.+++.+++.
T Consensus 76 tl~~R~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 76 TLQNRRAAVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555444444
No 276
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.91 E-value=8.1 Score=30.71 Aligned_cols=24 Identities=4% Similarity=-0.248 Sum_probs=18.2
Q ss_pred ccccccccccc---------cccccchhhHHHH
Q psy10797 469 SAKFVNFRRKS---------YFFVEFLDCLRTR 492 (517)
Q Consensus 469 kC~iC~~r~K~---------CgHvFC~~CIq~r 492 (517)
.|..|...+.- ||.+||..|...+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 58888875432 9999999997643
No 277
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=42.86 E-value=23 Score=35.67 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVA 317 (517)
Q Consensus 305 lE~EieeLr~kL~ 317 (517)
+..+++++|.++.
T Consensus 112 L~~dlEelR~~L~ 124 (307)
T 2l7b_A 112 LGADMEDVCGRLV 124 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555444
No 278
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.77 E-value=6.6 Score=34.32 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=18.5
Q ss_pred cccccccccccccccccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
.+++| ++||+.|+ +++. +.-+||.|+.
T Consensus 66 ~p~~C-------~~CG~~F~-----~~~~-kPsrCP~CkS 92 (105)
T 2gmg_A 66 KPAQC-------RKCGFVFK-----AEIN-IPSRCPKCKS 92 (105)
T ss_dssp CCCBB-------TTTCCBCC-----CCSS-CCSSCSSSCC
T ss_pred ECcCh-------hhCcCeec-----ccCC-CCCCCcCCCC
Confidence 55677 45999992 3333 3469999997
No 279
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=42.56 E-value=2.4e+02 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=10.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q psy10797 365 RIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 365 K~KAdQKyfaamreKdaLe~E 385 (517)
-.|+..+|+.+-++.+.+..+
T Consensus 159 l~KaK~~Y~~~c~e~e~a~~~ 179 (312)
T 3abh_A 159 VEAAKKAHHAACKEEKLAISR 179 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 280
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=42.51 E-value=76 Score=27.30 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE-LHLRNQAMDLNKRKAIESAQS 441 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE-L~~lkqale~~kkk~~E~sq~ 441 (517)
|.....|+.|+.....|+.- -.++|++.++.....=.++.|. +..++..+...+.|+.++.+.
T Consensus 4 M~~i~eLq~e~~~~E~QL~~---A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~ 67 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVT---TRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRE 67 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554444443322 2344555554444322233332 233444444444444444333
No 281
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=42.13 E-value=1.8e+02 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=8.1
Q ss_pred CcccccccccHHHHHHHHHH
Q psy10797 263 SDSASNIYGSLEFRKFACVV 282 (517)
Q Consensus 263 ~d~~~~i~~e~elr~rlk~l 282 (517)
+|..+++.+-..+.++.+.+
T Consensus 26 ~~~g~dl~~v~~ll~kh~~~ 45 (213)
T 1cun_A 26 EDYGRDLTGVQNLRKKHKRL 45 (213)
T ss_dssp CCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 34444444433443333333
No 282
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.92 E-value=8 Score=31.44 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=25.8
Q ss_pred cccccccccccc---------cccccchhhHHHHH-----hhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-----ETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-----~tR~RKCP~C~~ 505 (517)
-.|..|...+-- ||.+||..|...++ ....|-|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~ 71 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHT 71 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHH
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHH
Confidence 468888875532 99999999987543 234556655543
No 283
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.83 E-value=57 Score=33.21 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
+.++..++.+++..|+..+...+++...|...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~ 39 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQ 39 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 4455666667777776666666655555555555443
No 284
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.78 E-value=1.3e+02 Score=23.93 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 389 LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 389 Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
+++-+.++..+|++|-....++..+|.-+.+++..++....
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 44455567777888777777777777777777766655543
No 285
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.52 E-value=62 Score=32.98 Aligned_cols=14 Identities=0% Similarity=0.090 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 416 NAEKELHLRNQAMD 429 (517)
Q Consensus 416 ~lEKEL~~lkqale 429 (517)
+.+.++..++..++
T Consensus 23 ~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 23 SHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 33333333333333
No 286
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.48 E-value=87 Score=23.93 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
..+..+|.+++.|......+..+.+.|..|+..+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666665544
No 287
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.43 E-value=1.3e+02 Score=31.66 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQTVL 414 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL 414 (517)
|+..+...+..+...|+.|++.-....+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 121 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKI 121 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666665433333333
No 288
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.16 E-value=71 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
.=|..|+.++++|+.+++.++++.+.|...|..
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556665555555555555555543
No 289
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.02 E-value=2.2 Score=37.75 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=25.4
Q ss_pred cccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
-.|..|...+-- ||.+||..|...++. ..|-|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 368888875422 999999999887764 3778877755
No 290
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.80 E-value=2.3e+02 Score=26.48 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=20.2
Q ss_pred cccccccccccccccccccchhhHHHHHhhhccCCCCCCCCCCCceE
Q psy10797 466 REFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHR 512 (517)
Q Consensus 466 ~e~kC~iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~r 512 (517)
..|+|++ |||+.=. ...-+||.|+.+...+.+
T Consensus 170 ~~~~C~~-------CG~i~~g--------~~p~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 170 KFHLCPI-------CGYIHKG--------EDFEKCPICFRPKDTFTA 201 (202)
T ss_dssp CEEECSS-------SCCEEES--------SCCSBCTTTCCBGGGCEE
T ss_pred cEEEECC-------CCCEEcC--------cCCCCCCCCCCChHHhee
Confidence 3578877 4555321 123699999996665543
No 291
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.16 E-value=1e+02 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+.+.|+...++-.|-....+-|..+|.-|-+|+.|+.+-++.++
T Consensus 9 i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 9 VEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34455555666666666667788888888888888877776554
No 292
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=40.05 E-value=58 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEE 323 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~ 323 (517)
+.++.++.+|+.|..+++.+++..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 293
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=39.97 E-value=1.8e+02 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=8.4
Q ss_pred HHHHHHHhhhHHHHhhc
Q psy10797 277 KFACVVRDSKRDERKKL 293 (517)
Q Consensus 277 ~rlk~l~e~~~k~rqkl 293 (517)
..+.++.+.+.+++.-+
T Consensus 17 ~~l~~L~~lL~~E~~~L 33 (157)
T 2fup_A 17 GHANQLLQLVDEEFQAL 33 (157)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555544
No 294
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.90 E-value=14 Score=38.23 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=29.5
Q ss_pred cccccccccccccc------cccccchhh---HHHHHhhhccCCCCCCC--CCCCc
Q psy10797 466 REFSAKFVNFRRKS------YFFVEFLDC---LRTRYETRQRKCPKCNA--KANDY 510 (517)
Q Consensus 466 ~e~kC~iC~~r~K~------CgHvFC~~C---Iq~rl~tR~RKCP~C~~--~~~Dv 510 (517)
=.++|++=..+.+. |.|+-|.+- ++-+-..+.-+||.|++ ...|+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 34789886665554 999988764 22222344569999999 44444
No 295
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=38.97 E-value=2.2e+02 Score=25.92 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=38.1
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHH----------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 291 KKLADEEAMRKIKQLEDQTHQLQKQ----------------VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354 (517)
Q Consensus 291 qklad~Eal~rL~~lE~EieeLr~k----------------L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~Ek 354 (517)
+.++.+|+..||+...+++.+++.- +..+..+...+++..+ .+.-+.+...+.+++..+.+.
T Consensus 41 ~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~Lr~Dl~~li~slp--~~~kk~l~~La~~Lf~~le~L 118 (149)
T 1vyk_A 41 QPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKP--KDEKKSLQELTSKLFSSIDNL 118 (149)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776555533 3344445444444443 444444556666677777777
Q ss_pred HHHH
Q psy10797 355 DDAN 358 (517)
Q Consensus 355 ED~n 358 (517)
|.+.
T Consensus 119 D~AA 122 (149)
T 1vyk_A 119 DHAA 122 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 296
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=38.61 E-value=7.3 Score=33.67 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=33.5
Q ss_pred cccccccccccccc----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS----YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~----CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..|.|.-|=...|+ .-|-.|-.|+.-.+ ++...||.|+.
T Consensus 27 G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL-~~SdrCpIC~~ 69 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLVECNNHYLCLNCLTLLL-SVSNRCPICKM 69 (99)
T ss_dssp CCCCCCSSCSCCSSEEECSSCEEEHHHHHHTC-SSSSEETTTTE
T ss_pred CcccChhhccccCCeeeecchhhHHHHHHHHH-hhccCCcccCC
Confidence 45789999888888 67999999999977 56789999997
No 297
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=38.49 E-value=2.9e+02 Score=27.02 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 372 HKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 372 yfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
|...+++.-..|..++..+.--++....|.+|+-++- ...+|..+|.||...
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvra 143 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRA 143 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHH
Confidence 4445555555555555555555555555555554321 123455555555433
No 298
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=38.35 E-value=2.2e+02 Score=25.62 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhcch
Q psy10797 443 ADLKLHLVIIYTNGP 457 (517)
Q Consensus 443 ~dLk~qLeel~Ek~~ 457 (517)
+++....+.+..+..
T Consensus 190 ~~l~~~W~~L~~~~~ 204 (218)
T 3edu_A 190 QEVSAAWQALLDACA 204 (218)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444443
No 299
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.03 E-value=8.7 Score=31.30 Aligned_cols=25 Identities=4% Similarity=-0.279 Sum_probs=18.8
Q ss_pred cccccccccccc---------cccccchhhHHHH
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTR 492 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~r 492 (517)
-.|..|...|-- ||.+||..|...+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 368888876522 9999999997654
No 300
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=38.03 E-value=1.6e+02 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
.+..+-+..|...++.++.++.+.+.+++|.|....+....++|+|.
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777788888888888888777665555566666654
No 301
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=38.02 E-value=1.1e+02 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
++++.+-+.=+++-++.|.+- -.+...++..+++|......++.+.+.|..|+..+
T Consensus 14 ~~Y~~rR~rNN~AakrSR~kr-----k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKA-----KMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444555555544432 12222333334444444444444444444555443
No 302
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.90 E-value=8.7 Score=31.87 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=26.0
Q ss_pred ccccccccccc---------cccccchhhHHHHH------hhhccCCCCCCC
Q psy10797 469 SAKFVNFRRKS---------YFFVEFLDCLRTRY------ETRQRKCPKCNA 505 (517)
Q Consensus 469 kC~iC~~r~K~---------CgHvFC~~CIq~rl------~tR~RKCP~C~~ 505 (517)
.|..|...|-- ||.+||..|...++ ....|-|-.|-.
T Consensus 11 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~ 62 (88)
T 1wfk_A 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62 (88)
T ss_dssp BCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHH
T ss_pred CCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHH
Confidence 58888875422 99999999986543 235677777754
No 303
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.84 E-value=49 Score=25.28 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALL 327 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALl 327 (517)
|..|.++|+.+++.++++.+-|.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 304
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.81 E-value=3.5e+02 Score=27.75 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eAL 326 (517)
++--.+...+..+++..+|.
T Consensus 147 ~~~~~~~~e~~~k~~a~~af 166 (373)
T 3hhm_B 147 EEYTRTSQEIQMKRTAIEAF 166 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHH
Confidence 33444444444555554444
No 305
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.61 E-value=89 Score=27.71 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
...+++|-.-+-.+.++.+.|.+-++.++..=++ ...++.+|-.|.-.+.+.+..+.++++.+-.+
T Consensus 56 ~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~--------------Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 56 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE--------------QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777888888888877644333 23333344444444445555556666666655
Q ss_pred HHHH
Q psy10797 386 VQAL 389 (517)
Q Consensus 386 vk~L 389 (517)
++.+
T Consensus 122 v~~~ 125 (132)
T 1ykh_B 122 VDSM 125 (132)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 306
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.57 E-value=1.4e+02 Score=31.97 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQE 342 (517)
Q Consensus 327 lsEIEsIgqAyEdmQe 342 (517)
..+|-.+.+.|++++.
T Consensus 36 ~d~~~~ld~~~r~~~~ 51 (484)
T 3lss_A 36 VDAIIEADKKWRRTQF 51 (484)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445444444444333
No 307
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.35 E-value=2.1e+02 Score=26.62 Aligned_cols=16 Identities=19% Similarity=-0.008 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhHH
Q psy10797 273 LEFRKFACVVRDSKRD 288 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k 288 (517)
++=+++++++.++.++
T Consensus 70 ~EQq~ql~~I~~e~r~ 85 (175)
T 3lay_A 70 TEQQATAQKIYDDYYT 85 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544433
No 308
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=36.94 E-value=1.7e+02 Score=23.95 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 381 TLREQVQALSLQIEAMHTAIRKLEEK 406 (517)
Q Consensus 381 aLe~Evk~Lk~QlekQ~e~I~kLeE~ 406 (517)
++...++.|+.-+..-...|++|+|.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~ 40 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEV 40 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555443
No 309
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=36.83 E-value=1.9e+02 Score=24.46 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422 (517)
Q Consensus 344 NqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~ 422 (517)
.+.-+.++.++++.+.++- +....|..-.+.+...++.|.+.|.+.++.-......+....++|.
T Consensus 9 a~~~l~~i~eR~~eI~~Ie--------------~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~ 73 (109)
T 3hd7_B 9 SKQALSEIETRHSEIIKLE--------------NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666555542 2222333334455566677777777777655555545555555543
No 310
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=36.60 E-value=3.2e+02 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=17.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 362 MTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 362 ~aEK~KAdQKyfaamreKdaLe~E 385 (517)
..+-.|+..+|+.+-++.+....+
T Consensus 156 ~~~l~KaKk~Y~~~c~e~e~a~~~ 179 (350)
T 3aco_A 156 LKEVEAAKKAHHAACKEEKLAISR 179 (350)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888887766654
No 311
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.55 E-value=9.3 Score=36.04 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=24.8
Q ss_pred cccccccccccc---------cccccchhhHHHHH-------hhhccCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-------ETRQRKCPKC 503 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-------~tR~RKCP~C 503 (517)
-.|..|...+-- ||++||..|...++ ....|-|-.|
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C 213 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGC 213 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHH
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHH
Confidence 478889875422 99999999977543 2345666555
No 312
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.51 E-value=1.3e+02 Score=29.34 Aligned_cols=50 Identities=12% Similarity=0.376 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq 349 (517)
.|+..+.+++..|..+|+..+.|.+++.+-|+..-++..+++++.-+.+-
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLL 220 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45556666666777777777777777777776666666666666655543
No 313
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.38 E-value=11 Score=31.13 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=26.4
Q ss_pred cccccccccccc---------cccccchhhHHHHH-----hhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-----ETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-----~tR~RKCP~C~~ 505 (517)
-.|.+|...+-- ||++||..|...++ ....|-|-.|-.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~ 72 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYE 72 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHH
Confidence 468888875422 99999999987643 345667766644
No 314
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=36.36 E-value=2e+02 Score=24.60 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQT---HQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~Ei---eeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
+-|...|..+. .|....|+.++.+| +.+....+.++....-|.+|++...+.|
T Consensus 39 arLc~~Vd~t~------------~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 39 ARLCQQVDMTQ------------KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
No 315
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.10 E-value=1.2e+02 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 400 IRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432 (517)
Q Consensus 400 I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k 432 (517)
+..||...+.+..+.+.+|..++.++......+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555556666666666666665555544443
No 316
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=35.95 E-value=1.5 Score=38.48 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHhhcCcHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 276 RKFACVVRDSKRDERKKLADEEAM----RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342 (517)
Q Consensus 276 r~rlk~l~e~~~k~rqklad~Eal----~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe 342 (517)
..++..+...-+.-+.+.++.... +.+..||.++..|+.+++.+.+|.+.+..|++.+.+.|+++..
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~ 100 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQN 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.93 E-value=1.9e+02 Score=24.14 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy10797 378 EKDTLREQVQALS 390 (517)
Q Consensus 378 eKdaLe~Evk~Lk 390 (517)
.|+++..|+...+
T Consensus 25 AKQ~i~EELs~vr 37 (81)
T 1wt6_A 25 TRQSLSREMEAIR 37 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 318
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.73 E-value=2e+02 Score=30.75 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=31.8
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 292 KLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 292 klad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+..+.+...++-++.++-..++.+++.++++-+.+.+||..
T Consensus 29 R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 29 RFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556777788888888888888888888888888754
No 319
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.60 E-value=84 Score=28.64 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
...+++|-.-+-.+.++.+.|.+-++.++..=++ ...++.+|-.|.-.+.+.+..+.++++.+-++
T Consensus 56 ~~~~~ela~dli~kakqIe~LIdsLPg~~~seee--------------Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 56 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE--------------QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666677888888888877644333 22333333334444444444555555555555
Q ss_pred HHHH
Q psy10797 386 VQAL 389 (517)
Q Consensus 386 vk~L 389 (517)
++.+
T Consensus 122 v~~~ 125 (151)
T 1yke_B 122 VDSL 125 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 320
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=35.56 E-value=4.8e+02 Score=28.61 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10797 298 AMRKIKQLEDQTHQLQKQVAT 318 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s 318 (517)
+..++..+...-+.|+.....
T Consensus 448 I~~~~~~l~~~W~~L~~~~~~ 468 (863)
T 1sjj_A 448 VNARCQKICDQWDNLGALTQK 468 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 321
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.34 E-value=55 Score=24.28 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eAL 326 (517)
++++|.|+..|++++++++....+|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667766666666666555443
No 322
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.34 E-value=1.5e+02 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394 (517)
Q Consensus 354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle 394 (517)
+|....++-.|-....+-|..+|.-|-+|+.|+.+-++.++
T Consensus 17 lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 17 KEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444455666677777777777766665543
No 323
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=35.24 E-value=2.2e+02 Score=28.89 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 314 KQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 314 ~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
..+....++...-+.+++....+|-..++...++-.+.
T Consensus 20 ~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~ 57 (302)
T 3ibp_A 20 MALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC 57 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh
Confidence 33444445555556777888889999998888887765
No 324
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.21 E-value=95 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 AIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429 (517)
Q Consensus 399 ~I~kLeE~Er~L~~kLs~lEKEL~~lkqale 429 (517)
.+..|+.....|..++..+++|+..+++.+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555556666555555443
No 325
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.20 E-value=1.3e+02 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLE 404 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLe 404 (517)
..+..+++.|+.+|+..+-.-...|.-|+
T Consensus 9 enevaslenenetlkkknlhkkdliayle 37 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHH
Confidence 34455566666666555444444444333
No 326
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.09 E-value=94 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEd 339 (517)
++.|+.+++.++++.+.|..+|+.+....++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 35 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKE 35 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 327
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=34.92 E-value=3e+02 Score=26.05 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~ 317 (517)
++...+|..+..|...+.
T Consensus 40 ~rF~~le~~~~kL~k~~k 57 (237)
T 4avm_A 40 SNFYQQQAEGHKLYKDLK 57 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444444
No 328
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=34.72 E-value=92 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
..|++|++|+.++...+.++..+..|++.+
T Consensus 41 ~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 41 SFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467888888888888888888777776543
No 329
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=34.67 E-value=3.4e+02 Score=26.60 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10797 298 AMRKIKQLEDQTHQLQKQVATH----------KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK 367 (517)
Q Consensus 298 al~rL~~lE~EieeLr~kL~s~----------eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~K 367 (517)
+..++..+.+..+.++..++.. ..+...+..+|.-..+.++.+-++....+.+++..|..+.++..++.+
T Consensus 108 ~~~~f~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ikl~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~ 187 (339)
T 1sig_A 108 AREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK 187 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3466766666666666544421 222233333344446778888889999999999999999999989888
Q ss_pred hhhhHHHH
Q psy10797 368 SNQLHKLA 375 (517)
Q Consensus 368 AdQKyfaa 375 (517)
...+.|..
T Consensus 188 mpr~~fi~ 195 (339)
T 1sig_A 188 MPKKNFIT 195 (339)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 77776654
No 330
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=34.55 E-value=5e+02 Score=28.52 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 275 FRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT------HKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348 (517)
Q Consensus 275 lr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s------~eqe~eALlsEIEsIgqAyEdmQeQNqrkl 348 (517)
++.-+..+.+...+.+..+ .++.+.|..-+.+-+++|.++.. ..+-...|..++..+..++++..+-+....
T Consensus 439 l~~~~~~l~~l~~~~~~~L--~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~ 516 (704)
T 2xs1_A 439 VDQLIKELPELLQRNREIL--DESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVK 516 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333444444333333333 34556666666677788888763 344567899999999999999888887777
Q ss_pred HHHHHHHHHHHH
Q psy10797 349 QQLREKDDANFK 360 (517)
Q Consensus 349 qqL~EkED~n~K 360 (517)
..+.+.++.+.-
T Consensus 517 ~~~~~~~~~l~~ 528 (704)
T 2xs1_A 517 ECYQSHRDTIVL 528 (704)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776654433
No 331
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.38 E-value=82 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 AIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 399 ~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
.+.|||++-..|..+...++.+...++..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 355666666666666666666666665544
No 332
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=34.21 E-value=1.4e+02 Score=25.46 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTH--QLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 295 d~Eal~rL~~lE~Eie--eLr~kL~s~eqe~eALlsEI 330 (517)
++|...++..+..++. .+=..+-..+++.+.|+.+|
T Consensus 66 ~~e~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~I 103 (122)
T 2oeq_A 66 LPDEIEQAQKAMALAQQNEKLARLMALEQQMSITIAEV 103 (122)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444443 22233334444444444444
No 333
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.20 E-value=3.9e+02 Score=27.17 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHH
Q psy10797 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLM-TERIKSNQLHKLAREEKDTLRE 384 (517)
Q Consensus 331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~-aEK~KAdQKyfaamreKdaLe~ 384 (517)
+.+....++++..-.+.............+.. .+--|+..+|..+-++.+....
T Consensus 101 ~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~ 155 (406)
T 4dyl_A 101 SKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKR 155 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333334444444444 4555666677776665555443
No 334
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.09 E-value=2.1e+02 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 414 LTNAEKELHLRNQAMDLNKRKAIESA 439 (517)
Q Consensus 414 Ls~lEKEL~~lkqale~~kkk~~E~s 439 (517)
|..-.+++..++.+++.|++++.++.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555555555443
No 335
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=33.78 E-value=2.4e+02 Score=25.93 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------HHHHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM------------EVTGQAFEDMQ 341 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI------------EsIgqAyEdmQ 341 (517)
..|+.|+..-+.+++ +-||+.++...+. +.|+..+...-++.+-|-.|+ +.|-.||++.-
T Consensus 78 q~R~nlektAeeLRk-----aHPdVE~qA~~lr---dkLqaAVQ~t~qesqkLaKeVasn~eetN~KLaPkiK~Ay~dF~ 149 (166)
T 1eq1_A 78 QARQNVEKTAEELRK-----AHPDVEKEANAFK---DKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFV 149 (166)
T ss_dssp HHHHHHHHHHHGGGG-----CSHHHHHTCSSSH---HHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----hCchHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence 344444444444433 5577654433332 234455555556666666665 56888888876
Q ss_pred HHH
Q psy10797 342 EQN 344 (517)
Q Consensus 342 eQN 344 (517)
.+.
T Consensus 150 K~a 152 (166)
T 1eq1_A 150 KHA 152 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 336
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.36 E-value=5 Score=40.56 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.2
Q ss_pred cccccccccccccc-----------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 466 REFSAKFVNFRRKS-----------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 466 ~e~kC~iC~~r~K~-----------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
..=.|++|...+-- =.+++|+-|--+|- -..-+||.|+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-~~R~~C~~Cg~ 230 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-YVRIKCSHCEE 230 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE-CCTTSCSSSCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-ecCcCCcCCCC
Confidence 34579999985422 34789999988874 44569999998
No 337
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=33.31 E-value=2.1e+02 Score=31.25 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHH
Q psy10797 271 GSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT------HKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 271 ~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s------~eqe~eALlsEIEsIgqA 336 (517)
++++++.-++++++...+.+.+-... .....+|+=+.++|.+|+. .+++-+.+...++.+..+
T Consensus 525 s~~ei~~~~~~~~~~~~~D~~~~~~~---~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~w 593 (675)
T 3d2f_A 525 DAKKLNELIEKENEMLAQDKLVAETE---DRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEW 593 (675)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 45666666666654443322222112 3334556666677777752 223334444444444443
No 338
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.08 E-value=2.5e+02 Score=24.60 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.9
Q ss_pred cccccHHHH
Q psy10797 268 NIYGSLEFR 276 (517)
Q Consensus 268 ~i~~e~elr 276 (517)
-.++++++.
T Consensus 39 R~Y~~~dl~ 47 (142)
T 3gp4_A 39 RKFGAEDLR 47 (142)
T ss_dssp BCBCHHHHH
T ss_pred eeeCHHHHH
Confidence 455666554
No 339
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.26 E-value=1.4e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403 (517)
Q Consensus 366 ~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kL 403 (517)
.+|+++.-.+.+-+..|..+++.|.-+..+..+.|.+|
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333
No 340
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.17 E-value=55 Score=25.67 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 308 QTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 308 EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
.+.+|+.+++.++.+++.|.+||+.+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555666655543
No 341
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=31.97 E-value=3e+02 Score=25.11 Aligned_cols=50 Identities=6% Similarity=-0.015 Sum_probs=35.3
Q ss_pred cccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 270 YGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 270 ~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~ 319 (517)
..-+ .+.+.+.++.+...+-+....+|+-...+..+...+.+.+...+..
T Consensus 48 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~Y~~~f~~~ 98 (258)
T 2yfa_A 48 DTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKM 98 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 6677788888877777777777887777777777777666665543
No 342
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.89 E-value=2.3e+02 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQV 316 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL 316 (517)
.+|+.|+++++.|.+++
T Consensus 8 ~~i~~L~~q~~~L~~ei 24 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSL 24 (85)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 343
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=31.88 E-value=63 Score=33.03 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=36.3
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHH
Q psy10797 290 RKKLADEEAMRKIKQLEDQTHQLQKQVA------THKQEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 290 rqklad~Eal~rL~~lE~EieeLr~kL~------s~eqe~eALlsEIEsIgqAyEd 339 (517)
++-++.+++.++++.|.++|......+= -.+.++++|+.|+..++++|=+
T Consensus 3 ~~~~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~ 58 (332)
T 1ta8_A 3 QQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPD 58 (332)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCcc
Confidence 4455566666777777777777766642 3579999999999999988843
No 344
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=31.86 E-value=1.4e+02 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL 351 (517)
..+-|.++|...-|.|.-.+++.-++...|+..+
T Consensus 314 ~~~~ek~~Lk~asEii~s~gekise~~G~Kyk~l 347 (511)
T 1rh1_A 314 QENDEKTVLTKTSEVIISVGDKVGEYLGDKYKAL 347 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888888888888888877766665555
No 345
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.40 E-value=89 Score=24.43 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
..++..||.+++.|+...+.+..+.+.|-.++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888877776665
No 346
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=31.32 E-value=3.7e+02 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797 360 KLMTERIKSNQLHKLAREEKDTLREQ 385 (517)
Q Consensus 360 KL~aEK~KAdQKyfaamreKdaLe~E 385 (517)
+...+-.|+..+|+.+-++.+..+..
T Consensus 145 ~~~~~l~KaKk~Y~~~c~e~e~a~~~ 170 (337)
T 2x3v_A 145 KKMKELEAAKKAYHLACKEERLAMTR 170 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566777888877776654443
No 347
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.30 E-value=1.8e+02 Score=24.15 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNq 345 (517)
.++.--..+|-++++.+..+.++|..|++++.++-..+...+.
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556789999999999999999999999988877665543
No 348
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.30 E-value=86 Score=24.13 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALL 327 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALl 327 (517)
+.+.+|..+|+++.+++...+..-++++.|+
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777776666665554
No 349
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.22 E-value=63 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
+-+++|..+++.+++++..|..|++.+.+-
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777666543
No 350
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=30.92 E-value=3.1e+02 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=21.2
Q ss_pred cccccccccccccccccccchhhHHHHHhhhccCCCCCCCCCCCceEe
Q psy10797 466 REFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRL 513 (517)
Q Consensus 466 ~e~kC~iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rI 513 (517)
..|.|++ |||+.=. +. .-+||.|+.+...+.++
T Consensus 137 ~~~~C~~-------CG~i~~~-------~~-p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 137 KVYICPI-------CGYTAVD-------EA-PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CEEECTT-------TCCEEES-------CC-CSBCTTTCCBGGGCEEE
T ss_pred CeeEeCC-------CCCeeCC-------CC-CCCCCCCCCCHHHceec
Confidence 3477877 5666531 33 34999999966666553
No 351
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.89 E-value=98 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
++-.++|+.|++|.++...++...-++.+.++..|+..
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33448888888888887777777777777777666543
No 352
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.71 E-value=14 Score=35.26 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred cccccccccccc---------cccccchhhHHHHH-------hhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-------ETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-------~tR~RKCP~C~~ 505 (517)
-.|..|...+-- ||++||..|-..++ ..+.|-|-.|..
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~ 218 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 218 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHH
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHH
Confidence 378889875422 99999999987542 245677777754
No 353
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.68 E-value=2.3e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED 356 (517)
...+.|...++.+....+++..+-..+-.++.+...
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445544444444444444444444443
No 354
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.15 E-value=33 Score=35.75 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ 341 (517)
+..+.++..++....+.-.+..+|-.+-+.|++++
T Consensus 9 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 43 (425)
T 2dq3_A 9 EKPDYVKERLATRDKELVSLVDKVLELDKRRREII 43 (425)
T ss_dssp HCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 34444444444332210123344444444444433
No 355
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=29.86 E-value=2.3e+02 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsI 333 (517)
+...|.||.+|+..+.-+.++.+-|+.||=++
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 44567788888888888888888888887544
No 356
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=29.72 E-value=3.3e+02 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 332 VTGQAFEDMQEQNSRLLQQLREK 354 (517)
Q Consensus 332 sIgqAyEdmQeQNqrklqqL~Ek 354 (517)
.+..||-+++.|.+|...-+-++
T Consensus 19 ~v~~a~s~Id~qL~RR~dLipnL 41 (171)
T 2etd_A 19 EVQEXYSQIQNQLQRRADLIPNL 41 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444433333
No 357
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=29.36 E-value=1.6e+02 Score=29.54 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
..|.|..+...+.--+.++..++.++++-...++++++..+.+.+++..+|++++..++.+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLI 260 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466666666666667778888888888888888888888777788888888876654443
No 358
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.33 E-value=1.7e+02 Score=26.92 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=20.8
Q ss_pred ccccccccccccccccccchhhHHHHHhhhccCCCCCCCCCCCceE
Q psy10797 467 EFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHR 512 (517)
Q Consensus 467 e~kC~iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~r 512 (517)
.|+|++ |||++=.+ ....+||.|+.+..++..
T Consensus 155 ~~~C~~-------CG~~~~g~-------~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 155 KWRCRN-------CGYVHEGT-------GAPELCPACAHPKAHFEL 186 (191)
T ss_dssp EEEETT-------TCCEEEEE-------ECCSBCTTTCCBGGGEEE
T ss_pred eEEECC-------CCCEeeCC-------CCCCCCCCCcCCHHHHHh
Confidence 578877 56664322 223499999997666654
No 359
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.94 E-value=3.5e+02 Score=27.91 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10797 327 LNEMEVTGQAFEDMQE 342 (517)
Q Consensus 327 lsEIEsIgqAyEdmQe 342 (517)
..|++.+.+..+++..
T Consensus 75 ~~e~~~l~~~~~~le~ 90 (354)
T 3d5a_X 75 KAEREALLARKEALEK 90 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 360
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=28.93 E-value=1.7e+02 Score=24.32 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQT 309 (517)
Q Consensus 296 ~Eal~rL~~lE~Ei 309 (517)
++...++..+..++
T Consensus 64 ~e~~~~~~~l~~~i 77 (113)
T 2iaz_A 64 ASFQAKMEGFGKQI 77 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 361
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=28.77 E-value=2.4e+02 Score=22.99 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-EMEVTGQAFED-------MQEQNSRLLQQLREKDD 356 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALls-EIEsIgqAyEd-------mQeQNqrklqqL~EkED 356 (517)
+....|+.+..|.++|..++++.+++...+.. |++.+-.+|+. +..|+-.||.++=.+-|
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMNRKd 70 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTERTLKTQAVNKLAEIMNRKD 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 362
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.45 E-value=2.1e+02 Score=24.01 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQ 315 (517)
Q Consensus 305 lE~EieeLr~k 315 (517)
+++++++++.+
T Consensus 20 L~~ei~~~~a~ 30 (85)
T 3viq_B 20 LESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 363
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.25 E-value=1.5e+02 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 380 DTLREQVQALSLQIEAMHTAIRK 402 (517)
Q Consensus 380 daLe~Evk~Lk~QlekQ~e~I~k 402 (517)
+.|+.|+..++.+.++..+.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~ 28 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQ 28 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444443333333
No 364
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.20 E-value=3e+02 Score=27.19 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CcccccccccHHHHHHHHHHHhhhHHH--HhhcCcHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 263 SDSASNIYGSLEFRKFACVVRDSKRDE--RKKLADEEAM---RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 263 ~d~~~~i~~e~elr~rlk~l~e~~~k~--rqklad~Eal---~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
|+.-+..|+-..|++.-..+...+.=- |+.++..|.. .||+.|..--.-+-.+|+.+++++--|-.||..+..-.
T Consensus 142 ~e~I~~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 142 TAAISSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp CCGGGGSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy10797 338 EDMQE 342 (517)
Q Consensus 338 EdmQe 342 (517)
+.+++
T Consensus 222 ef~qE 226 (242)
T 3uux_B 222 DFLEE 226 (242)
T ss_dssp HHHTT
T ss_pred HHHHH
No 365
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=28.11 E-value=1.8e+02 Score=26.55 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVAT---------HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERI 366 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s---------~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~ 366 (517)
+||+..-+.+...+++|+.++.. -.++-+.|+.|++.+-..++.+-...++--. .-+.
T Consensus 7 AEAL~lRadl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~-------------~~~~ 73 (154)
T 3kdq_A 7 AEALAQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNS-------------VTEF 73 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------TSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccc
Confidence 55665556666777777777662 1234566777776664433332211111100 0011
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 367 KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK--LEE-------KERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 367 KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k--LeE-------~Er~L~~kLs~lEKEL~~lkqa 427 (517)
.-+...-.+...+|.|..+...++.-.+.-...-.+ -.| .-+.++.+...+.|++..+...
T Consensus 74 ~~~~tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~ 143 (154)
T 3kdq_A 74 SEGMTLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVD 143 (154)
T ss_dssp ETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHH
Confidence 112233356666777777766666655443321000 000 0145666666666666555443
No 366
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.00 E-value=1.2e+02 Score=22.58 Aligned_cols=26 Identities=27% Similarity=0.601 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10797 301 KIKQLEDQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~eqe~eAL 326 (517)
|.+.+|....+|..++..++.|+.+|
T Consensus 11 r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444444444444444444443
No 367
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=27.87 E-value=3.9e+02 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEdmQeQNqrklq 349 (517)
+..+++..||...+..++.+.....+++.
T Consensus 152 ~~h~~~~~~l~~~~~~v~~l~~~a~~L~~ 180 (323)
T 3edv_A 152 RMHTTFEHDIQALGTQVRQLQEDAARLQA 180 (323)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666555555555555543
No 368
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.82 E-value=3e+02 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 386 vk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
+...+.|++.-.+.+.+++++-..|.++.--+|.+++.++...
T Consensus 64 lnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 64 LDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344666677777788888887788888888888887776554
No 369
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=27.71 E-value=4.7e+02 Score=26.13 Aligned_cols=209 Identities=8% Similarity=0.052 Sum_probs=0.0
Q ss_pred ceeeeecchhhhHHHHHHhHhhhhc--CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHH-------HHHH
Q psy10797 237 TLFVSICTSAFQMSFYKSRWFDFRS--LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIK-------QLED 307 (517)
Q Consensus 237 ~~~~~~~~a~~~~~al~~~l~~~~~--~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~-------~lE~ 307 (517)
.+.-++...+.++..+...-..+.+ ++++..--..-.++..+-..+.+....-++++ .+++.... ....
T Consensus 176 ~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L--~~~~~~~~~~e~l~~~f~~ 253 (476)
T 1hci_A 176 AFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL--ERMEKLLETIDQLHLEFAK 253 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----HHHHHHHH
Q psy10797 308 QTHQLQKQVA-------------------THKQEEEALLNEMEVTGQAFEDM---QEQNSRLLQQLR-----EKDDANFK 360 (517)
Q Consensus 308 EieeLr~kL~-------------------s~eqe~eALlsEIEsIgqAyEdm---QeQNqrklqqL~-----EkED~n~K 360 (517)
.+.++..=++ .+-+..+.+..||+..+..+..+ .....+++.... +......+
T Consensus 254 ~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~ 333 (476)
T 1hci_A 254 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVT 333 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTCSSC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhcc
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy10797 361 LMTERIKSNQLHKLAREEKDTLREQVQAL-------SLQIEAMHTAIRKLEEKERFLQ-------TVLTNAEKELHLRNQ 426 (517)
Q Consensus 361 L~aEK~KAdQKyfaamreKdaLe~Evk~L-------k~QlekQ~e~I~kLeE~Er~L~-------~kLs~lEKEL~~lkq 426 (517)
+-.=..+=++....+..-+..|+..++.. +.=....++...=+.+.+..+. ..+..+-+++..+..
T Consensus 334 ~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~~~~~~~~~le~~l~~~~~~~~ 413 (476)
T 1hci_A 334 MDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEH 413 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 427 AMDLNKRKAIESAQSAADLKL 447 (517)
Q Consensus 427 ale~~kkk~~E~sq~~~dLk~ 447 (517)
.++.++..+..+......+..
T Consensus 414 el~~~~~~~~~l~~~~~~l~~ 434 (476)
T 1hci_A 414 NIINYKNNIDKLEGDHQLIQE 434 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
No 370
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.43 E-value=1.2e+02 Score=24.79 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 400 IRKLEEKERFLQTVLTNAEKELHLRNQ 426 (517)
Q Consensus 400 I~kLeE~Er~L~~kLs~lEKEL~~lkq 426 (517)
+..|+.....|..++..+++++..+++
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555443
No 371
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=27.36 E-value=3.1e+02 Score=23.87 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEALLN--EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT 363 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eALls--EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a 363 (517)
..++.+++.++.-++-+++|.++|.+ .++ +.+.+-++-+.++.+|...|..-.+++.
T Consensus 11 ~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~----~L~~i~~~K~~ll~~L~~~~~~R~~~l~ 69 (154)
T 3opc_A 11 SCLERENALVVEFLHALEAETEALMDRRAHE----SLQAAVQRKETLADDLAQLGAERDALLS 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777754 555 3344444455566666666666555543
No 372
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=27.25 E-value=3.7e+02 Score=24.74 Aligned_cols=18 Identities=0% Similarity=-0.071 Sum_probs=6.6
Q ss_pred cccccccHHHHHHHHHHH
Q psy10797 266 ASNIYGSLEFRKFACVVR 283 (517)
Q Consensus 266 ~~~i~~e~elr~rlk~l~ 283 (517)
..++.+-..+-++.+.++
T Consensus 44 g~dl~~v~~llkkh~~~~ 61 (250)
T 1quu_A 44 SASLTEVRALLRKHEAFE 61 (250)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 334333333333333333
No 373
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.20 E-value=3e+02 Score=23.62 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=7.2
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q psy10797 314 KQVATHKQEEEALLNEMEVT 333 (517)
Q Consensus 314 ~kL~s~eqe~eALlsEIEsI 333 (517)
++|...++..+-+..+++.+
T Consensus 15 KqL~~~~q~~~e~e~~k~eL 34 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKEL 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 374
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.19 E-value=78 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 401 RKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 401 ~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
++|+|.-|.|+.-+..+.+.+..+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555555554443
No 375
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.18 E-value=1.7e+02 Score=24.04 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK 419 (517)
..|...++.++.+|+..-..--.+++.+|..|..|...|..++.
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~ 63 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444444444433
No 376
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.17 E-value=32 Score=30.76 Aligned_cols=21 Identities=14% Similarity=-0.053 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhHHHHhhcC
Q psy10797 274 EFRKFACVVRDSKRDERKKLA 294 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqkla 294 (517)
.+.++|+.+...+.+.+++++
T Consensus 7 ~~K~Eiq~L~drLD~~~rKla 27 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQA 27 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777763
No 377
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.13 E-value=85 Score=27.05 Aligned_cols=63 Identities=24% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 362 MTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424 (517)
Q Consensus 362 ~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l 424 (517)
+..+..++..|..++.+.+.+-.++..=...++.+.+...+-.+.-+..+..|..+|+++..+
T Consensus 22 ~~~~~~~~~sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 22 QTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp ---CCCBCCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677788777777766665556677777777777777777778888888887766
No 378
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.13 E-value=6.4e+02 Score=27.43 Aligned_cols=11 Identities=45% Similarity=0.755 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTH 310 (517)
Q Consensus 300 ~rL~~lE~Eie 310 (517)
.||+.+|.+..
T Consensus 97 ~Kl~eLE~e~k 107 (526)
T 3iyk_A 97 AKLKELEDEQR 107 (526)
T ss_pred HHHHHHHHHHh
Confidence 56666665543
No 379
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.88 E-value=67 Score=31.82 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=7.2
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy10797 313 QKQVATHKQEEEALLNEME 331 (517)
Q Consensus 313 r~kL~s~eqe~eALlsEIE 331 (517)
...+..++++...|..||+
T Consensus 74 ~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 74 METLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 380
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.83 E-value=3.4e+02 Score=24.11 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 295 DEEAMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 295 d~Eal~rL~~lE~EieeLr~kL~ 317 (517)
..++..++..||.+...|..+-+
T Consensus 4 a~~V~s~l~~LEaeyq~L~~kE~ 26 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLANQEE 26 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766544
No 381
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.73 E-value=1.9e+02 Score=22.03 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
.+...++.+|+.....|...++++||.+.-+.
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 44556777788777777777788887776543
No 382
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.60 E-value=1.1e+02 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~ 317 (517)
.+...||.|+++|+..+.
T Consensus 15 ~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 15 SKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhc
Confidence 444445555555554443
No 383
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.38 E-value=1e+02 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 399 AIRKLEEKERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 399 ~I~kLeE~Er~L~~kLs~lEKEL~~lkqa 427 (517)
.+.||+|+-..|..+...++.|...++..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35566666555555555666665555443
No 384
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=26.21 E-value=51 Score=35.61 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=42.4
Q ss_pred ccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 267 SNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 267 ~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
+.+++++-|+-||+.+...++ .+.....+.++++|++|+.-|.+-+.-.+.+..|+..+-+.|-
T Consensus 421 se~Qa~aIl~mrL~rLt~le~--------~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g 484 (500)
T 3lpx_A 421 TAEQAKAIVDLQLYKLSGMEH--------DKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFG 484 (500)
T ss_dssp CHHHHHHHHTCBGGGGSHHHH--------HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhHHHHhhhHHH--------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 344555555555554443332 3445667778888888888888888888888888888877764
No 385
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.15 E-value=82 Score=25.40 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
++.+..|...++-|.+|+..|..++.+...|.++++..-..+.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444666677777778888888888887777777776665554
No 386
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.05 E-value=2.1e+02 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
+|++.++..++.|+..++.+++....+..+|
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 387
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=26.04 E-value=6.1e+02 Score=26.82 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=51.5
Q ss_pred cCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHH--------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 261 SLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEE--------AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 261 ~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~E--------al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+.||..+.-+..++-+.-+++++.+.+..---+ -+| .+.++.++..+++-.++.++..+...=.|-+.|+.
T Consensus 477 kgpdvsdlnqqitekenalkevkgayrealfsy-feeyqkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqida 555 (761)
T 4fye_A 477 KGPDVSDLNQQITEKENALKEVKGAYREALFSY-FEEYQKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDA 555 (761)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 457765555555566666666665544311100 111 12566666666666666555555555555667888
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Q psy10797 333 TGQAFED-MQEQNSRLLQQLREKD 355 (517)
Q Consensus 333 IgqAyEd-mQeQNqrklqqL~EkE 355 (517)
+.+||=. -..|..+-+++|.|.-
T Consensus 556 lrkayytehkgqinkalqelkeqi 579 (761)
T 4fye_A 556 LRKAYYTEHKGQINKALQELKEQI 579 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhc
Confidence 8877643 3345555555555443
No 388
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.92 E-value=1.2e+02 Score=26.75 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEAL---LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL-- 374 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eAL---lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa-- 374 (517)
.++..+......|+..+..+.+..+.| .+.++.+.+|.+.+..... .....++.
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~---------------------~~~~ilvplg 67 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE---------------------EKPEILVPIG 67 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---------------------SSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------CCceEEEEcC
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 375 ----------------------------AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE 420 (517)
Q Consensus 375 ----------------------------amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE 420 (517)
+-+.++-++..+..++.++++..+.+..+++.-+.+...+..+..+
T Consensus 68 ~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 68 AGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp SSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred CCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 389
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=25.86 E-value=3.5e+02 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKEL 421 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL 421 (517)
.+..|..+.+.+..+...|..+.+-+
T Consensus 84 ~np~V~~y~~Ae~~l~~LL~~I~~iI 109 (151)
T 2pih_A 84 EIPVIQEFRDSQMEVNDLLQLVAHTI 109 (151)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665544
No 390
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.61 E-value=2.8e+02 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE 338 (517)
+|+.+++|...++.++....-|++|.++..+-.+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555556666655544333
No 391
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.53 E-value=1.4e+02 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 410 LQTVLTNAEKELHLRNQAMDLNKRKAIESAQS 441 (517)
Q Consensus 410 L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~ 441 (517)
|.-++.++|-+|..-+++....++++..+.-.
T Consensus 60 L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~A 91 (130)
T 3cl3_D 60 LRMQGQSVEAALRMERQAASEEKRKLAQLQVA 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556555555555544445555544433
No 392
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.52 E-value=6.5e+02 Score=26.96 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10797 417 AEKELHLRNQAMDLNKRKAI 436 (517)
Q Consensus 417 lEKEL~~lkqale~~kkk~~ 436 (517)
.+..|..++..++..++++.
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~ 180 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQ 180 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 393
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.48 E-value=2.9e+02 Score=22.86 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 376 REEKDTLREQVQALSLQIE 394 (517)
Q Consensus 376 mreKdaLe~Evk~Lk~Qle 394 (517)
++..+.-.+|+.+|+..-+
T Consensus 17 ~E~~~q~qaEl~sLrrT~~ 35 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444444455555554433
No 394
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=25.37 E-value=1.6e+02 Score=26.38 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
|+.+.++++++...+..+..+..+++.-+.++..--+.+...+.+-+.|++++=
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkI 57 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLI 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777776644434444455556666655543
No 395
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=25.36 E-value=4.6e+02 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq 350 (517)
.+.....|...+..+.+.|.++|.....++.+
T Consensus 136 ~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~ 167 (279)
T 2xhe_B 136 RQSQHSSLSRKFVKVMTRYNDVQAENKRRYGE 167 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777888888888888888777766654
No 396
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=25.34 E-value=2.2e+02 Score=21.39 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEV 332 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEs 332 (517)
+|+.++.|...++.++....-|++|.++
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555443
No 397
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=25.20 E-value=79 Score=22.52 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEE 324 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~e 324 (517)
++..+..++|++|+.+...++++.-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 4566667777777777776666543
No 398
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.14 E-value=1.3e+02 Score=20.79 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy10797 301 KIKQLEDQTHQLQKQVATH 319 (517)
Q Consensus 301 rL~~lE~EieeLr~kL~s~ 319 (517)
.|+++..||+.|+-+++++
T Consensus 10 eiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 10 EIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 399
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=25.05 E-value=18 Score=28.65 Aligned_cols=12 Identities=58% Similarity=1.179 Sum_probs=7.6
Q ss_pred hhhccCCCCCCC
Q psy10797 494 ETRQRKCPKCNA 505 (517)
Q Consensus 494 ~tR~RKCP~C~~ 505 (517)
..|+|+||.|+.
T Consensus 2 ks~mr~C~~Cg~ 13 (60)
T 2aus_D 2 RFRIRKCPKCGR 13 (60)
T ss_dssp --CCEECTTTCC
T ss_pred CccceECCCCCC
Confidence 356777877776
No 400
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.70 E-value=1.2e+02 Score=21.67 Aligned_cols=26 Identities=23% Similarity=0.045 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 400 IRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 400 I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
+.||+|+-..|..+-++++++...++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45555554444444455555544443
No 401
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.45 E-value=2.8e+02 Score=24.18 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE 355 (517)
+.-|++.|...+++.+.|..||..+....+.+.....=-...|++-|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.44 E-value=2.7e+02 Score=25.29 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=18.0
Q ss_pred cccccccccccccc----------cccccchhhH
Q psy10797 466 REFSAKFVNFRRKS----------YFFVEFLDCL 489 (517)
Q Consensus 466 ~e~kC~iC~~r~K~----------CgHvFC~~CI 489 (517)
.+-.|.+|...++= |.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 45678888886432 9999999886
No 403
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.18 E-value=2e+02 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEEEALLNE-MEVTGQAFED 339 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~eALlsE-IEsIgqAyEd 339 (517)
.++.++++|+..++..+++...+..+ .+.+..+++.
T Consensus 230 ~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 266 (357)
T 3rrk_A 230 RMKERARLAPEELVGIREEVARLSRESGEALIALWTR 266 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554 4444444444
No 404
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.17 E-value=2.5e+02 Score=21.69 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405 (517)
Q Consensus 371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE 405 (517)
.|..+-+..+.|..|+..|+..++.-+..+++||-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 46677777888888888888777766666666654
No 405
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=24.17 E-value=4.5e+02 Score=24.65 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797 309 THQLQKQVATHKQEEEAL--------LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374 (517)
Q Consensus 309 ieeLr~kL~s~eqe~eAL--------lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa 374 (517)
+...|++++...-++++. ..||+.-...|+...++....+.++.+.+......+.+-++|.-.|+.
T Consensus 138 i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~ 211 (240)
T 2z0v_A 138 IGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHR 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444444 448888888888888888888888888876666677777777666665
No 406
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=24.14 E-value=1e+02 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq 335 (517)
++++.++.+++.+..+|= .+.+..+|+.+|..++.
T Consensus 22 ~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~~~~ 56 (147)
T 2rjz_A 22 AQMKEMEESFGALLRQLP-SDTEVPGLLEDITRTGL 56 (147)
T ss_dssp HHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHH
Confidence 555555555555555554 34566777777766654
No 407
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.09 E-value=1.1e+02 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797 307 DQTHQLQKQVATHKQEEEALLNEMEVTGQA 336 (517)
Q Consensus 307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqA 336 (517)
..+.+|+.+++.++.+++.|..||..+...
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544433
No 408
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.97 E-value=2.2e+02 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEI 330 (517)
+++.++.+|++.+...+.+.+...+.++.-+
T Consensus 56 Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 56 RKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666555555555555544433
No 409
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.87 E-value=4.4e+02 Score=24.40 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy10797 302 IKQLEDQTHQLQKQV--ATHKQEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE 378 (517)
Q Consensus 302 L~~lE~EieeLr~kL--~s~eqe~eALlsEI-EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamre 378 (517)
+..+..-..++..++ ....++.+++..+. +.+..-.++++++..-...++.+ +.......-
T Consensus 37 ~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~----------------~l~~~~e~l 100 (191)
T 1nfn_A 37 LRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRA----------------RLSKELQAA 100 (191)
T ss_dssp HHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH----------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Q psy10797 379 KDTLREQVQALSLQIEAMHTAIRK-LEEKERFLQTVLTNAEKELH-LRNQAMDLNKRKAIESAQSA-ADLKLHLVIIYTN 455 (517)
Q Consensus 379 KdaLe~Evk~Lk~QlekQ~e~I~k-LeE~Er~L~~kLs~lEKEL~-~lkqale~~kkk~~E~sq~~-~dLk~qLeel~Ek 455 (517)
+..+...+..|+.++.-..+.+.. +...-..++.+|.-.-.++. .+.+.++..+.++.-..... +.+...+++++++
T Consensus 101 r~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~veel~~~ 180 (191)
T 1nfn_A 101 QARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRER 180 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q psy10797 456 G 456 (517)
Q Consensus 456 ~ 456 (517)
.
T Consensus 181 L 181 (191)
T 1nfn_A 181 L 181 (191)
T ss_dssp -
T ss_pred h
No 410
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.50 E-value=2.5e+02 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk 347 (517)
||.+|..|+..+.+..+.-..|..=+..++.|..++|.+-...
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN~~ 44 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888889998888888888888888889999999988876543
No 411
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.18 E-value=3.9e+02 Score=23.57 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy10797 402 KLEEKERFL 410 (517)
Q Consensus 402 kLeE~Er~L 410 (517)
+|++.++..
T Consensus 44 KLkdA~~~~ 52 (113)
T 4fi5_A 44 KVRDAEKQY 52 (113)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344444333
No 412
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.07 E-value=81 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 297 EAMRKIKQLEDQTHQLQKQVA 317 (517)
Q Consensus 297 Eal~rL~~lE~EieeLr~kL~ 317 (517)
+...||..+|.+++.|+..+.
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 413
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.94 E-value=5.4e+02 Score=25.19 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQ 321 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eq 321 (517)
+++.++.++++..-. -.+.+.+++|..++.++-.++..+...+.
T Consensus 175 ~l~~~i~~lE~~l~~----~~~~~~l~~l~~lrr~l~~lrr~l~~~~~ 218 (339)
T 4ev6_A 175 NLEDELEELEDKLLA----GYDREVMEKILGLRKTLVYFHKSLIANRD 218 (339)
T ss_dssp HHHHHHHHHHHTSTT----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344444444443321 13456667777777777666666555443
No 414
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.80 E-value=23 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=20.2
Q ss_pred cccccccccccccc----cccccchhhHHHHHhhhccCCCCCC
Q psy10797 466 REFSAKFVNFRRKS----YFFVEFLDCLRTRYETRQRKCPKCN 504 (517)
Q Consensus 466 ~e~kC~iC~~r~K~----CgHvFC~~CIq~rl~tR~RKCP~C~ 504 (517)
+.|+|.+|...++. -.|+ ..-...+...||.|+
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~------~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHV------RSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHH------HHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHH------HHccCCCCCCCcCCC
Confidence 46899998887664 3332 111223556899986
No 415
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.69 E-value=1.3e+02 Score=23.20 Aligned_cols=20 Identities=10% Similarity=0.331 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10797 304 QLEDQTHQLQKQVATHKQEE 323 (517)
Q Consensus 304 ~lE~EieeLr~kL~s~eqe~ 323 (517)
..|.|+++|+.++..+++-.
T Consensus 25 ~Me~Ei~elr~RY~~KRqPI 44 (51)
T 2jo8_A 25 MMEQEIEEIRQKYQSKRQPI 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhH
Confidence 34557788888888777653
No 416
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=22.52 E-value=4.9e+02 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10797 320 KQEEEALLNEMEVTGQAFEDM 340 (517)
Q Consensus 320 eqe~eALlsEIEsIgqAyEdm 340 (517)
......++.|++.+++.-..+
T Consensus 66 ~~aw~~~~~~~e~~a~~h~~~ 86 (290)
T 3i2w_A 66 EAAWKGVLTESERISDVHMKI 86 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 417
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=22.52 E-value=5.2e+02 Score=24.79 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797 357 ANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ 392 (517)
Q Consensus 357 ~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q 392 (517)
.|.+|..|-.--+|++..+.+-|..|+-.++.-+.+
T Consensus 130 En~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~ 165 (214)
T 2cly_A 130 NNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMM 165 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666555555555444433
No 418
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.48 E-value=38 Score=25.72 Aligned_cols=15 Identities=27% Similarity=0.877 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCceEe
Q psy10797 499 KCPKCNAKANDYHRL 513 (517)
Q Consensus 499 KCP~C~~~~~Dv~rI 513 (517)
+||.|+.+..++..|
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (52)
T 1e8j_A 38 ACPVCGASKDAFEKQ 52 (52)
T ss_dssp CCSSSCCCTTSCEEC
T ss_pred cCCCCCCcHHHcEEC
Confidence 899999988777653
No 419
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.43 E-value=75 Score=35.76 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
+..+.+++++++|+.-|++.+.-.+.+..|+..+-+.|
T Consensus 409 ~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 409 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444455555555555554
No 420
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.29 E-value=1.5e+02 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHH
Q psy10797 309 THQLQKQVATHKQEE-EALLNEMEVTG 334 (517)
Q Consensus 309 ieeLr~kL~s~eqe~-eALlsEIEsIg 334 (517)
++++|..+.+.+++. +|+.+|+-..|
T Consensus 17 L~E~RkElqK~K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 17 LEEVKKELQKVKEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468888888877775 88888886554
No 421
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=22.26 E-value=1.7e+02 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=21.0
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10797 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQ 321 (517)
Q Consensus 293 lad~Eal~rL~~lE~EieeLr~kL~s~eq 321 (517)
+.++|-..||+.+++++++|+.+..++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 284 LNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888877665443
No 422
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.21 E-value=2.8e+02 Score=21.50 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVT 333 (517)
Q Consensus 319 ~eqe~eALlsEIEsI 333 (517)
.+.....|...|..|
T Consensus 28 i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 28 AQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444444
No 423
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=22.02 E-value=5.6e+02 Score=25.01 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10797 321 QEEEALLNEMEVTGQAFED 339 (517)
Q Consensus 321 qe~eALlsEIEsIgqAyEd 339 (517)
...+.+..|++.+++.-..
T Consensus 88 ~aw~~l~~e~e~~a~~H~~ 106 (350)
T 3aco_A 88 KAWMAFMSEAERVSELHLE 106 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443
No 424
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.01 E-value=3.1e+02 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhHHHHhhc
Q psy10797 273 LEFRKFACVVRDSKRDERKKL 293 (517)
Q Consensus 273 ~elr~rlk~l~e~~~k~rqkl 293 (517)
++|+..+...+..+.-.+||+
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKL 45 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKV 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554
No 425
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.94 E-value=4.3e+02 Score=23.58 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353 (517)
Q Consensus 319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E 353 (517)
.+...+.|..++..+.+.|...|.....++.+-.+
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~ 116 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888887777765544
No 426
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.85 E-value=3.3e+02 Score=22.23 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=33.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
.+|..++..++.|.+-|+.=+.++-.-..+.-+.|.++-.+....+-...-|
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4666667777777666666666666666666666666666665555544444
No 427
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.82 E-value=2.7e+02 Score=21.20 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIE 437 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E 437 (517)
+...|.+|++..-.|..++..++.......|..+..++-+.+
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
No 428
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=21.80 E-value=4e+02 Score=23.16 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHHHHhhhHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797 278 FACVVRDSKRDERKKLAD-EEAMRKIKQLEDQTHQLQKQVATHK 320 (517)
Q Consensus 278 rlk~l~e~~~k~rqklad-~Eal~rL~~lE~EieeLr~kL~s~e 320 (517)
.+.++.+.+.+|+.-+.. -|+. .|..+-++...|=.+++..+
T Consensus 19 ~l~~L~~lL~~E~~~L~~~~d~~-~L~~i~~~K~~ll~~L~~~~ 61 (154)
T 3opc_A 19 LVVEFLHALEAETEALMDRRAHE-SLQAAVQRKETLADDLAQLG 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666644 3332 33333333333434444333
No 429
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=21.76 E-value=6.1e+02 Score=26.21 Aligned_cols=8 Identities=0% Similarity=-0.172 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q psy10797 277 KFACVVRD 284 (517)
Q Consensus 277 ~rlk~l~e 284 (517)
.+++.+.+
T Consensus 9 ~~~~~~~~ 16 (365)
T 1gqe_A 9 NRIQDLTE 16 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 430
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.58 E-value=5.7e+02 Score=24.90 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 385 QVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425 (517)
Q Consensus 385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk 425 (517)
++++++..++...++|.+-++.-..+..++...|.++..++
T Consensus 85 rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~ 125 (242)
T 3c9i_A 85 RIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQ 125 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhh
Confidence 33444444555555555555544444444555544444443
No 431
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.57 E-value=4.8e+02 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=14.7
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHH
Q psy10797 361 LMTERIKSNQLHKLAREEKDTLR 383 (517)
Q Consensus 361 L~aEK~KAdQKyfaamreKdaLe 383 (517)
...+-.|+..+|+.+-++.+.+.
T Consensus 134 ~~~~l~Kak~~Y~~~c~e~e~~~ 156 (276)
T 2v0o_A 134 ITQALQKSKENYNAKCVEQERLK 156 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777877777666554
No 432
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.46 E-value=7.9e+02 Score=28.50 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=12.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhcchhh
Q psy10797 436 IESAQSAADLK-LHLVIIYTNGPAR 459 (517)
Q Consensus 436 ~E~sq~~~dLk-~qLeel~Ek~~a~ 459 (517)
.+..++.+++. .+.+.++++...+
T Consensus 962 ~~I~~R~~~L~~~~W~~L~~la~~R 986 (1010)
T 1g8x_A 962 PELTERKDTFFAQQWTGVKSSAETY 986 (1010)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554 4555555555443
No 433
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.18 E-value=1.6e+02 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQE 322 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe 322 (517)
+.|+.-|++|.+|+.++..+++.
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666665543
No 434
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.15 E-value=90 Score=23.13 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy10797 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEA 325 (517)
Q Consensus 296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eA 325 (517)
.|...|=+.+|+.|..|..+|+.+.+..++
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566667777777777777776666554
No 435
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.09 E-value=6.1e+02 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10797 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALL 327 (517)
Q Consensus 274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALl 327 (517)
.+..++.++++..-. -.+.+..++|..++.++-.||..+...+.-.+.|.
T Consensus 199 ~l~~~id~lE~~v~~----~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 248 (363)
T 2iub_A 199 KIDDEIDVLEEEVLE----RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 248 (363)
T ss_dssp HHHHHHHHHHHHTTS----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544321 12345567777777777777776666655555443
No 436
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.77 E-value=2.4e+02 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa 427 (517)
.+..+.|..|++.++.+......+.++...+++.
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777766666666655555544433
No 437
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.64 E-value=1.1e+02 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy10797 304 QLEDQTHQLQK 314 (517)
Q Consensus 304 ~lE~EieeLr~ 314 (517)
+||.++++|-.
T Consensus 5 QLE~kVEeLl~ 15 (36)
T 1kd8_A 5 QLEAEVEEIES 15 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 438
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.47 E-value=63 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=27.8
Q ss_pred cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797 468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA 505 (517)
Q Consensus 468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~ 505 (517)
|+|..|+....+ =|.++|..|-.++.. .+|+.|++
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~ 71 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHN 71 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCS
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCC
Confidence 789889886544 477899999877653 58999999
No 439
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.33 E-value=2.8e+02 Score=20.81 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10797 406 KERFLQTVLTNAEKELHLRNQA 427 (517)
Q Consensus 406 ~Er~L~~kLs~lEKEL~~lkqa 427 (517)
.|.+|..-++++..+++.+...
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 440
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.27 E-value=4.2e+02 Score=22.83 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361 (517)
Q Consensus 305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL 361 (517)
|+.++-+-+..+...+.+....+.=+.++..+.+....|-++...++.+.++.+.+|
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~L 79 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKL 79 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444445555555566666677777777777777766665555666666655555
No 441
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.27 E-value=1.5e+02 Score=33.77 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy 337 (517)
..++.+++++++|+.-|++.+.-.+.+..|+..+-+.|
T Consensus 703 ~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~y 740 (767)
T 2xkj_E 703 HEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444445555555555544
No 442
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.27 E-value=2.6e+02 Score=23.41 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10797 335 QAFEDMQEQNSRLLQQL 351 (517)
Q Consensus 335 qAyEdmQeQNqrklqqL 351 (517)
+-|..+.....+++.++
T Consensus 12 ~df~~l~~~i~~kl~~i 28 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARV 28 (102)
T ss_dssp HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444454444
No 443
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.22 E-value=4.2e+02 Score=22.85 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334 (517)
Q Consensus 300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIg 334 (517)
++|..+|+|-=+|..++...+-+.+-|..-+-.+|
T Consensus 56 ~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlg 90 (106)
T 1j1d_B 56 QTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQ 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55666777777777777776666666655554443
No 444
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.20 E-value=2.7e+02 Score=21.83 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797 396 MHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428 (517)
Q Consensus 396 Q~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal 428 (517)
+...+.+|++..-.|..++..+|-+.+...|.+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEi 41 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEI 41 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666655554444443
No 445
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=20.20 E-value=4.4e+02 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q psy10797 303 KQLEDQTHQLQKQVATHKQEEEAL 326 (517)
Q Consensus 303 ~~lE~EieeLr~kL~s~eqe~eAL 326 (517)
+.++.++...+..++...+..+.|
T Consensus 43 ~~~~~ei~~~~~~v~~v~~~g~~L 66 (213)
T 1cun_A 43 KRLEAELAAHEPAIQSVLDTGKKL 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444443333333
Done!