RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10797
(517 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 56.3 bits (136), Expect = 2e-08
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 279 ACVVRDSKRDERKKLADE----EAMRKIK-QLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
C R + E KKL E E +K+ LE++ QLQ+++ E+ +
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI----DEQNKEYKSLL-- 948
Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
+ +++ S ++LR + E + +EE LR+++ +
Sbjct: 949 -EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
+ + K + + L + L E+ L+ + +LN+R ++ + ++ L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELK--EQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Score = 52.0 bits (125), Expect = 4e-07
Identities = 16/162 (9%), Positives = 60/162 (37%), Gaps = 10/162 (6%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
+ + + + R+ +A E +K+K + +K E + +++
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKREL-KKLKIEARSVERYKKL----HIGLENKIMQLQ-- 934
Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
+ ++ ++ LL+++ + + + +++ EE +V +L +I
Sbjct: 935 -RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA 435
+ + + + +++ ++ + E +L ++
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHE--TEQLVSELKEQNT 1033
Score = 45.9 bits (109), Expect = 3e-05
Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 9/144 (6%)
Query: 286 KRDERKKLADEEAMRK-----IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
++K+ ++ K + LE +++ + + E + +
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQ----LHKLAREEKDTLREQVQALSLQIEAM 396
QE+ ++L ++L + + K L +E+ L+ + + L+ +I
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 397 HTAIRKLEEKERFLQTVLTNAEKE 420
I + EK+ +T +
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLN 1073
Score = 33.9 bits (78), Expect = 0.15
Identities = 15/77 (19%), Positives = 30/77 (38%)
Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
+ KK +E A + + E +L++Q K E+E L + + + E+
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 345 SRLLQQLREKDDANFKL 361
+ E D + +L
Sbjct: 1061 LVEETKQLELDLNDERL 1077
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 53.2 bits (127), Expect = 2e-08
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
S ++E E +M+ + ++ +L + ++ E L ++ Q D+Q
Sbjct: 6 SSLKEETAYWK-ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD 64
Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403
N RL ++ + KL + +S + + ++ R + L + + A L
Sbjct: 65 NQRLKYEVEALKE---KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121
Query: 404 EEKERFLQTVLTNAEKELHLRNQAMDLNK 432
E +R L + E+ L NQA++ N
Sbjct: 122 ERAKRATIMSLEDFEQRL---NQAIERNA 147
Score = 38.9 bits (90), Expect = 0.002
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
E + + E ++ Q E + LQ K E EAL ++E L
Sbjct: 38 EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDL 97
Query: 349 QQLREKDDANFKLMTE-RIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407
Q R + K + E ++ L + R +L + Q L+ IE +L+EKE
Sbjct: 98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157
Query: 408 RFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQ 440
L+++A DL + A+ Q
Sbjct: 158 SL-------LVSVQRLKDEARDLRQELAVRERQ 183
Score = 38.6 bits (89), Expect = 0.002
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354
E+ + Q Q L+ ++ + +E L + QA +D++ R E
Sbjct: 76 KEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK-RATIMSLED 134
Query: 355 DDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411
+ ER + +EK++L VQ L + + + E ++ +
Sbjct: 135 FEQRLNQAIERNAFLESEL---DEKESLLVSVQRLKDEARDLRQELAVRERQQEVTR 188
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 53.1 bits (127), Expect = 6e-08
Identities = 27/167 (16%), Positives = 67/167 (40%)
Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
K+ + KL E A+ + + E + + + E +L +++ T + E
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65
Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405
++L + + N+ +L EE D +E++ ++E A + E
Sbjct: 66 DAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125
Query: 406 KERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452
+ +++ E+++ ++ + K A ++ + ++ LVII
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 172
Score = 51.6 bits (123), Expect = 2e-07
Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 2/166 (1%)
Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
+++ D + + A + KQLED+ LQK++ + E + ++ + E
Sbjct: 15 KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELA 74
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
+++ + + + E ++ + A ++ + + ++ + +
Sbjct: 75 EKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 134
Query: 401 RKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
+K EEK + L A+ ++ + RK + +
Sbjct: 135 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Score = 48.5 bits (115), Expect = 2e-06
Identities = 19/166 (11%), Positives = 59/166 (35%), Gaps = 2/166 (1%)
Query: 283 RDSKRDERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
D + K + E A +K E L +++ ++E + + Q E+
Sbjct: 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA 116
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
++ + ++ + K + K A+ + + + ++ ++ + + +
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176
Query: 401 RKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
+ EE+ + E+E+ + + +A + +Q +
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE 222
Score = 46.6 bits (110), Expect = 8e-06
Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370
++K++ K ++E L+ + + ++++ +L +L E K ++
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQAMD 429
K A+E+ + ++ + +++ I+ EE+ Q L A ++L A +
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122
Query: 430 L-NKRKAIESAQSAADLKL 447
K IES + K+
Sbjct: 123 SERGMKVIESRAQKDEEKM 141
Score = 46.6 bits (110), Expect = 1e-05
Identities = 18/150 (12%), Positives = 51/150 (34%)
Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
K + + + + ++ E++ + Q+ K E + E + ++
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176
Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
R ++ + +L E K + + ++ +I+ + +++ E
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Query: 405 EKERFLQTVLTNAEKELHLRNQAMDLNKRK 434
+ F + +T EK + + K K
Sbjct: 237 TRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
Score = 45.8 bits (108), Expect = 1e-05
Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 16/176 (9%)
Query: 287 RDERKKLADE--EAMRKIKQLEDQTHQLQ--------------KQVATHKQEEEALLNEM 330
D K+L DE +K+K ED+ + K+ + + +L +
Sbjct: 33 EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI 92
Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
++ + + QE+ + LQ+L E + A + + E+ + Q++
Sbjct: 93 QLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK 152
Query: 391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
E ++ K +++ L AE+ L + + + L+
Sbjct: 153 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208
Score = 45.0 bits (106), Expect = 3e-05
Identities = 19/126 (15%), Positives = 49/126 (38%)
Query: 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR 383
+A+ +M++ E+ ++ + +D + +L E + + K +E D
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAA 443
E ++ ++E E L + E+EL + + +K E+ ++A
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 444 DLKLHL 449
+ + +
Sbjct: 122 ESERGM 127
Score = 41.2 bits (96), Expect = 5e-04
Identities = 20/158 (12%), Positives = 60/158 (37%), Gaps = 7/158 (4%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
+R + A++K+++ E + ++ + + E+ + E + E + Q
Sbjct: 100 DRAQERLATALQKLEEAEKAADESERGM----KVIESRAQKDE---EKMEIQEIQLKEAK 152
Query: 349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKER 408
+ D ++ + + + A E + + L +I+ + ++ LE +
Sbjct: 153 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE 212
Query: 409 FLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
E+E+ + + + + +A + +S L+
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250
Score = 29.6 bits (66), Expect = 2.0
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
E A R + +LE L+ ++ K + +A+ E++ A DM
Sbjct: 240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD---HALNDMTS 283
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 50.1 bits (119), Expect = 2e-07
Identities = 19/142 (13%), Positives = 56/142 (39%), Gaps = 4/142 (2%)
Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359
+++++ D ++ + + ++QE+N L + D +
Sbjct: 13 KQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYY 72
Query: 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419
+L + E L+ ++ +L +++ + + K+E + + Q +L ++EK
Sbjct: 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132
Query: 420 ELHLRNQAMDLNKRKAIESAQS 441
E ++++ ++S Q
Sbjct: 133 E----KNNLEIDLNYKLKSLQQ 150
Score = 44.3 bits (104), Expect = 2e-05
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 1/142 (0%)
Query: 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365
++ QLQKQ+ + ++ +M + S+L RE + N L +
Sbjct: 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64
Query: 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LR 424
++++ + + + R S I + I L+E+ + L+ L E E +
Sbjct: 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124
Query: 425 NQAMDLNKRKAIESAQSAADLK 446
+ K K LK
Sbjct: 125 DMLNHSEKEKNNLEIDLNYKLK 146
Score = 27.4 bits (60), Expect = 8.4
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
+ K E+ + K+ +D + +K+ + + L ++ Q E ++
Sbjct: 107 KHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQ---QRLEQEVNEHKVTK 163
Query: 349 QQLRE 353
+L +
Sbjct: 164 ARLTD 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 52.5 bits (126), Expect = 3e-07
Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 2/140 (1%)
Query: 284 DSKRDERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
+ ++ K L + I +LE + + +K ++ + L E + ++Q
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
Q + L QL +K++ + A ++ L + L +E+ A
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 402 KLEEKERFLQTVLTNAEKEL 421
K E+++R L L + EL
Sbjct: 1141 KAEKQKRDLSEELEALKTEL 1160
Score = 52.1 bits (125), Expect = 3e-07
Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 287 RDERKKLADEEAMR------------KIKQLEDQTHQLQKQVATHKQEEEAL---LNEME 331
D ++L +EEA R KIK++ED ++ Q +E + L ++++
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Query: 332 VTGQAFEDMQEQNSRLLQQL-REKDDANFKLMTERIKSNQLHKLARE---EKDTLREQVQ 387
E+ + ++L + + +L E +L K+ R+ E L EQ+
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077
Query: 388 ALSLQIEAMHTAIRKLE----------EKERFLQTVLTNAEKELHLRNQAM--DLNK-RK 434
L QI + + K E E E + +EL + DL +
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137
Query: 435 AIESAQSA 442
A A+
Sbjct: 1138 ARNKAEKQ 1145
Score = 51.4 bits (123), Expect = 5e-07
Identities = 34/182 (18%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 274 EFRKFACVVRDSKRDERKKLADE-----EAMRKIKQLEDQTHQLQKQVATHKQEEEALLN 328
E ++ A + +L +E E ++ +L + +++ ++A KQE E +L+
Sbjct: 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930
Query: 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA 388
EME E+ +E++ +L + ++ L + + + + EK T +++
Sbjct: 931 EME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 389 LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LRNQAMDLNKRKAIESAQSAADLKL 447
+ I M KL ++ + L+ +++ L +A +L K K + ++L++
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-KHESMISELEV 1046
Query: 448 HL 449
L
Sbjct: 1047 RL 1048
Score = 50.2 bits (120), Expect = 1e-06
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 8/170 (4%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK---QEEEALLNEMEVTGQAFED 339
+ + ++ +EE + +QL+ + ++Q+Q+ + +EEEA +++
Sbjct: 926 EEILHEMEARIEEEE--ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ---LEKVT 980
Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
+ ++ + +D N KL ER + E+ + L+ +
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 400 IRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
I +LE + + + EK + E A+LK L
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Score = 49.8 bits (119), Expect = 2e-06
Identities = 25/166 (15%), Positives = 72/166 (43%), Gaps = 3/166 (1%)
Query: 273 LEFRKFACVVRDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330
L F + + +E + +E + ++ E + +L+++ +E+ L ++
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901
Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
+ + + + +E RL + +E ++ ++ + + + + EK +++Q+ L
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQAMDLNKRKA 435
Q+E A +KL+ ++ + E ++ + +Q L K +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Score = 48.7 bits (116), Expect = 5e-06
Identities = 31/184 (16%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQK----------QVATHKQEEEALLNEMEV 332
+ E+KK+ + + +QLE++ QK ++ + + + ++
Sbjct: 943 SQQLQAEKKKMQQQMLDLE-EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL-----HKLAREEK--DTLREQ 385
+ + ++E+ S L L E+++ L + K + +L +EEK L +
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADL 445
+ L + +H I +L+ + L+ L E+EL ++ + + + +L
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 446 KLHL 449
+ H+
Sbjct: 1122 ESHI 1125
Score = 44.4 bits (105), Expect = 9e-05
Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
R ++KL E + +I +L+ Q +L+ Q+A ++E +A L +E +
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Query: 341 QEQNSRL---LQQLREKDDANFKLMTERIKSNQ-LHKLAREEKDTLREQVQALSLQIEAM 396
++ L + L+E ++ + K + L + K L + + + Q E
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELR 1174
Query: 397 HTAIRKLEEK 406
+ + ++K
Sbjct: 1175 GSDYKDDDDK 1184
Score = 32.1 bits (73), Expect = 0.52
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 11/145 (7%)
Query: 300 RKIKQLEDQTHQLQKQVATH---KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
K +Q + +Q V + L +E+ ++L+ +
Sbjct: 812 AKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKE 871
Query: 357 ANFKLMTERIKSNQLHKLAREEKDTLREQVQA-------LSLQIEAMHTAIRKLEEKERF 409
K E + Q H EEK+ L+E++QA + ++LEE
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931
Query: 410 LQTVLTNAEKEL-HLRNQAMDLNKR 433
++ + E+ L+ + + ++
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQ 956
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 48/319 (15%), Positives = 97/319 (30%), Gaps = 88/319 (27%)
Query: 226 YHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDS 285
Y DI S+ F+ +F + FD + + D +I E ++
Sbjct: 16 YQYKDILSV------------FEDAFVDN--FDCKDVQDMPKSILSKEEIDH---IIMSK 58
Query: 286 KRDER-KKLAD--------------EEAMRK-IKQLEDQTHQLQKQVATHKQEEEALLNE 329
+L EE +R K L Q+Q + + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 330 MEVTGQAFEDMQEQNSRLLQQLRE-----KDDANFKL--M-----------------TER 365
+ Q F + +LR+ + N + + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 366 IKSNQLH--KLAREEK-DTLREQVQALSLQIEAMHTA--------IRKLEEKERFLQTVL 414
++ L +T+ E +Q L QI+ T+ ++ + L+ +L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 415 TNAEKE---LHLRN-------QAMDLNKR-------KAIESAQSAADLKLHLVIIYTNGP 457
+ E L L N A +L+ + K + SAA H+ + + +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMT 297
Query: 458 ARLEFGKDREFSAKFVNFR 476
L + + K+++ R
Sbjct: 298 --LTPDEVKSLLLKYLDCR 314
Score = 45.2 bits (106), Expect = 4e-05
Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 60/255 (23%)
Query: 269 IYGSLEFRKFACVVRDSKRDERKKLADEEA-----MRKIKQLEDQTHQLQKQVATHKQEE 323
I G L K V D + + + ++ E LQK +
Sbjct: 155 IDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREK------DDA---------NFK---LMTER 365
+ + +Q + RLL+ + + N L+T R
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 366 IKS--NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHL 423
K + L A +L L+ +E + L L ++ L
Sbjct: 274 FKQVTDFL-SAATTTHISLDHHSMTLT------------PDEVKSLLLKYLDCRPQD--L 318
Query: 424 RNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFV 483
+ + N R + + A ++ +G A + K VN + +
Sbjct: 319 PREVLTTNPR-RL--SIIAESIR--------DGLATWDNWKH-------VNCDKLTTIIE 360
Query: 484 EFLDCLRTRYETRQR 498
L+ L E R+
Sbjct: 361 SSLNVLEP-AEYRKM 374
Score = 43.7 bits (102), Expect = 2e-04
Identities = 45/326 (13%), Positives = 93/326 (28%), Gaps = 89/326 (27%)
Query: 59 VRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSF 118
+DL + +N S++ +R + TT +SS
Sbjct: 315 PQDLPRE------VLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 119 GIFRLSSTVF--VYHCFSIFR----FSSSTVFVYHCFSIFRFSSSTVFVYHCFSIF--RF 170
+ L + ++ S+F + + + I V H +S+ +
Sbjct: 364 NV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 171 SSSTVFVYHCFSIFRFSSSTVFVYH-----------CFSIFRFSSSTVFVYHCFSIFRFS 219
ST+ + + + + H F + Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY----FYSH- 476
Query: 220 SSTIFVYHCFDI-----FSLTSTLFVSICTSAFQMSFYKSRWFDFRSL------SDSASN 268
+H +I +L +F DFR L +A N
Sbjct: 477 ----IGHHLKNIEHPERMTLFRMVF-----------------LDFRFLEQKIRHDSTAWN 515
Query: 269 IYGSL-----EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQE- 322
GS+ + + + + D+ D + R + + D ++++ + K
Sbjct: 516 ASGSILNTLQQLKFYKPYICDN---------DPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 323 --EEALLNEMEVTGQAFEDMQEQNSR 346
AL+ E FE+ +Q R
Sbjct: 567 LLRIALMAE---DEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.061
Identities = 62/391 (15%), Positives = 111/391 (28%), Gaps = 133/391 (34%)
Query: 229 FDIFSLTSTLFVSICTSA---FQM--SFYKSRWFDFRSLSDSASNIYGSLE-----FRKF 278
F IF L + C S +M ++ S SD +SNI + R+
Sbjct: 182 FKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 279 ACV------------VRDSK---------------RDERKKLAD--EEAMRKIKQLEDQT 309
V+++K R K++ D A L+ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHS 295
Query: 310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ----NSRLLQQLRE--KDDA----NF 359
L T + + LL +D+ + N R L + E +D N+
Sbjct: 296 MTL-----TPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 360 K-LMTERIKSNQLHKLAREEKDTLREQVQALSL-----QIEAMHTAIRKLEEKERFLQTV 413
K + +++ + L E R+ LS+ I + ++ + + + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 414 LTNAEKELHLRNQAMDLNKRKAIE--------SAQSAADLKLHLVII--YTNGPARLEF- 462
+ +LH + K I + + LH I+ Y N P +
Sbjct: 408 V----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSD 462
Query: 463 -------------------------GKDREFSAKFVNFRRKSYFFVE------------- 484
+ F F++FR F+E
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNAS 517
Query: 485 --FLDCLRT--RYETR-QRKCPKCNAKANDY 510
L+ L+ Y+ PK N
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 47.5 bits (112), Expect = 4e-06
Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 10/171 (5%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM-----EVTGQAFE 338
+E + + K+L LQK++A ++ E G E
Sbjct: 135 GQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVE 194
Query: 339 DMQEQNSRLLQQLREKDDANFKLMTERIKSN--QLHKLAREEKDTLREQVQALSLQIEAM 396
+ + + + + + ER+++ ++ R+ D ++EQV + ++E
Sbjct: 195 QGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQ 254
Query: 397 HTAIR-KLEEKERFLQTVLTNAEKELH--LRNQAMDLNKRKAIESAQSAAD 444
IR + E + L++ +++ Q + + +A +D
Sbjct: 255 AQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVEKVQAAEGTSAAPVPSD 305
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 45.1 bits (106), Expect = 1e-05
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 30/102 (29%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
D E E++RK + E+Q +LQ+ A K E+ +A +D++E
Sbjct: 78 DRLTQE------PESIRKWR--EEQRKRLQELDAASKVMEQEWRE------KAKKDLEEW 123
Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385
N R +Q+ EK +N+ +K ++
Sbjct: 124 NQRQSEQV-EK----------NKINNR-----IADKAFYQQP 149
Score = 44.4 bits (104), Expect = 2e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRK--IKQLEDQTH----QLQKQVATHKQEEEALL 327
E RK R + D K E+ R+ K LE+ Q++K ++ ++A
Sbjct: 93 EQRK-----RLQELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 328 NEME 331
+ +
Sbjct: 147 QQPD 150
Score = 40.1 bits (93), Expect = 6e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 315 QVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374
Q QE E++ E EQ RL +E D A ++ + +
Sbjct: 76 QADRLTQEPESIRKWRE----------EQRKRL----QELDAA------SKVMEQEWREK 115
Query: 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411
A+++ + ++ Q+E R ++ F Q
Sbjct: 116 AKKDLEEWNQRQSE---QVEKNKINNRIADKA--FYQ 147
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 22/96 (22%)
Query: 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRK 434
+E +++R+ + +++ + A + +E++ R A+K+L NQ K
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWR------EKAKKDLEEWNQRQSEQVEK 133
Query: 435 AIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSA 470
+ + A F + +
Sbjct: 134 NKINNRIADK----------------AFYQQPDADI 153
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 43.7 bits (103), Expect = 1e-05
Identities = 19/121 (15%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 288 DERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
E + +E +++ E + +L++++ + QE+ L +++ D +E+
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 346 RLLQQLREKD----DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
+L++ + + + N +L E + +L +K L ++ L I+ + +
Sbjct: 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELT----AKKRKLEDECSELKRDIDDLELTLA 128
Query: 402 K 402
K
Sbjct: 129 K 129
Score = 39.9 bits (93), Expect = 3e-04
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK 367
++ + +K++A+ K+E L +E + ++++E+ LLQ EK+D ++ E+
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQ---EKNDLQLQVQAEQDN 63
Query: 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQ 426
A E D L + L +++ M+ + EE L E E L+
Sbjct: 64 LAD----AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
Query: 427 AMDL 430
DL
Sbjct: 120 IDDL 123
Score = 31.4 bits (71), Expect = 0.28
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
+++ + + ++ +A K R + + +EK+ L+ QVQA +
Sbjct: 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEER 70
Query: 400 IRKLEEKERFLQTVLTNAEKELHL---RNQAMDLNKRKA 435
+L + + L+ + K L N + KRK
Sbjct: 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 46.7 bits (110), Expect = 2e-05
Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 18/184 (9%)
Query: 288 DERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347
+LA E + Q +Q A + E + +L++ E E+ +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE---------AEKARKE 705
Query: 348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407
L +L A E + + +R E + + L +++A AI E E
Sbjct: 706 LLELEAMSMA-----VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 408 RFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDRE 467
R + E EL ++L KA + A A + G R E
Sbjct: 761 RVKKV----REMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
Query: 468 FSAK 471
K
Sbjct: 817 MQVK 820
Score = 36.3 bits (83), Expect = 0.027
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEA--LLNEM 330
LE + V + + + + EA R + +L+ Q + E E +
Sbjct: 707 LELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVR 766
Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
E+ E QQL + FK MTE + + LA + + +Q+L
Sbjct: 767 EMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLG 826
Query: 391 LQ 392
L+
Sbjct: 827 LK 828
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 44.5 bits (105), Expect = 6e-05
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 280 CVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339
C + D + K+ + ++ LED HQ++ + + KQ +A+ +
Sbjct: 23 CGIADFLSTYQTKVD-----KDLQSLEDILHQVENKTSEVKQLIKAI-----------QL 66
Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
+ + + + M E I + T ++ L + +
Sbjct: 67 TYNPDESSKPNMIDAATLKSRKMLEEIMKYE------ASILTHDSSIRYLQEIYNSNNQK 120
Query: 400 IRKLEEKERFLQTVLTNAEKELHLRNQAM 428
I L+EK L+ K+ +
Sbjct: 121 IVNLKEKVAQLEAQCQEPCKDTVQIHDIT 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 4e-04
Identities = 79/560 (14%), Positives = 158/560 (28%), Gaps = 202/560 (36%)
Query: 18 LTLSRGKVEPNGGPSSLIPMSPHHKMMPGTGRDMKMIESDQVRDLKSQLNGQNTAKRSNH 77
LTLS G +E L+P + + Q+++ +++ + T +
Sbjct: 9 LTLSHGSLEH----VLLVPTASF-------------FIASQLQEQFNKILPEPTEGFAAD 51
Query: 78 LNQTFCVASLL------IAQLRRKTER----------MKKIEQ-----------AGTL-- 108
++ A L+ ++ L ++ + + E A L
Sbjct: 52 -DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 109 DETTPWDSSFGIFR--LSSTVFVYHCFSIFRFSSSTVF------VYHCFSIF-------- 152
+ T + + + +++ + + S+S +F +IF
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 153 -------RFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVY-HCFSIFRF-- 202
+ + V V + +FS+ + R + V+ +I +
Sbjct: 169 YFEELRDLYQTYHVLV---GDLIKFSAE-----TLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 203 ----SSSTVFVYHCFSIFRFSSSTIFVY---H----C----------FDIFSLTSTLFVS 241
+ ++ S I V H +
Sbjct: 221 NPSNTPDKDYLLSIP----ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 242 ICTSAFQMSFYKSRWFDFRSLSDSASNI-----------YGSLEFRKFACVVRDSKRDER 290
+ T+ ++ S W F A + Y + ++ DS +
Sbjct: 277 LVTAVA-IAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDSLEN-- 330
Query: 291 KKLADEEA---MRKIK-----QLEDQTHQLQKQVATHKQEEEALLN---EMEVTGQAFED 339
+E M I Q++D ++ + KQ E +L+N + V+G +
Sbjct: 331 ----NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-QS 385
Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
+ L LR K A L RI ++
Sbjct: 386 LY----GLNLTLR-KAKAPSGLDQSRIPFSE----------------------------- 411
Query: 400 IRKLEEKERFLQ-TV------LTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452
RKL+ RFL L A + DL + + +A D+++ +
Sbjct: 412 -RKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDL-VKNNVSF--NAKDIQIP---V 459
Query: 453 Y-TNGPARLEFGKD-REFSA 470
Y T G D R S
Sbjct: 460 YDTFD------GSDLRVLSG 473
Score = 37.7 bits (87), Expect = 0.012
Identities = 33/181 (18%), Positives = 56/181 (30%), Gaps = 66/181 (36%)
Query: 349 QQLREKDDANFKLMTERIK-----SNQLHKLAR----------EEKDTLREQVQALSLQ- 392
QL+E+ + TE + + + K +QV L L
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 393 IEA-------MHTAIRKLEEKERFLQTVLTNAEKELHLRN--QAMDLNKR---KAIESA- 439
E +H KL ++ T + + ++N A + KR K SA
Sbjct: 91 FENCYLEGNDIHALAAKLLQEND-----TTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 440 -QSAADLKLHLVIIYTNGPARL--EFGK--DREFSAKFVNFRRKSYFFVEFLDCLRTRYE 494
++ + G A+L FG + + YF + LR Y+
Sbjct: 146 FRAVGE-----------GNAQLVAIFGGQGNTD-----------DYF-----EELRDLYQ 178
Query: 495 T 495
T
Sbjct: 179 T 179
Score = 36.6 bits (84), Expect = 0.026
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 31/129 (24%)
Query: 4 LSSADIIFRQDYPMLTLSRGKVEPNGGPSSL-IPMSPHHKMMPGTGRDMKMIESDQVRDL 62
L A + +D L + V N + IP+ + G D++++ +
Sbjct: 432 LVPASDLINKD-----LVKNNVSFNA--KDIQIPV--YD---TFDGSDLRVLSGSISERI 479
Query: 63 KSQLNGQNTAKRSNHLNQTFCVASLLI-------AQLRRKTERMK-----KIEQAGTLDE 110
+ T A+ ++ + L T R K ++ AGTLD
Sbjct: 480 VDCI----IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 111 TTPWDSSFG 119
D +G
Sbjct: 536 NP--DDDYG 542
Score = 31.6 bits (71), Expect = 0.76
Identities = 49/364 (13%), Positives = 97/364 (26%), Gaps = 149/364 (40%)
Query: 230 DIFSLTSTLFVSICTSAFQM-----SFYKSRWFD------------FRSLSDSASNIY-- 270
DI +L + L T+ + ++ +R FR++ + + +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 271 ----GSLE--FRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEE 324
G+ + F +E + L + + L + + ++ + E
Sbjct: 160 FGGQGNTDDYF------------EELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAE 206
Query: 325 ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA-----------NFKLMTERIKSNQL-H 372
+ Q +L+ L + + L I QL H
Sbjct: 207 KVF------TQGLN--------ILEWLENPSNTPDKDYLLSIPISCPL----IGVIQLAH 248
Query: 373 -----KLAREEKDTLREQVQALSLQIEAMHTA--IRKLEEKERFLQTVLTNAEKELH--- 422
KL LR ++ + + + TA I + + E F + K +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV----SVRKAITVLF 304
Query: 423 ---LRNQ-------------------------AM----DLNKRKAIESAQSAADLKL--- 447
+R M +L ++ ++ + + L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAG 363
Query: 448 -HLVIIYTNGP---------------------ARLEFGKDR---EFSAKFVNFRRKSYFF 482
+ I NG A+ G D+ FS RK F
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS------ERKLKFS 417
Query: 483 VEFL 486
FL
Sbjct: 418 NRFL 421
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 38.7 bits (90), Expect = 5e-04
Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 18/110 (16%)
Query: 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK 360
++ Q + Q Q ++ KQ E +NE + + + D +K
Sbjct: 6 QLAQFQQLQQQAQ-AISVQKQTVEMQINETQKALEELSRAAD------------DAEVYK 52
Query: 361 ----LMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406
++ K +L +E+ +TL+ + + + Q E + +++++
Sbjct: 53 SSGNILIRVAKDELTEEL-QEKLETLQLREKTIERQEERVMKKLQEMQVN 101
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 39.8 bits (92), Expect = 5e-04
Identities = 21/134 (15%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 284 DSKRDERKKL-ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
+ K + + + A+ QL++ + L+++++ E + L ++ + +E
Sbjct: 20 EQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 79
Query: 343 QNSRLLQQLRE-----KDDANFKLMTERIKSNQLHKLAREEKDTLRE---QVQALSLQIE 394
+ +L +++ + D+AN + R + + L + + LRE + L+LQ++
Sbjct: 80 EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139
Query: 395 AMHTAIRKLEEKER 408
+ + L+ +
Sbjct: 140 NLKKVMHSLDNEST 153
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 40.7 bits (94), Expect = 0.001
Identities = 19/153 (12%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Query: 276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335
+K + + + RK + EE ++ + ++ Q E+E + V +
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE 497
Query: 336 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA 395
+ + + + ++ + + + E +K K+ + L+EQ + L+L+++
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT-EKMENDRVQLLKEQERTLALKLQE 556
Query: 396 MHTAIRK-LEEKERFLQTVLTNAEKELHLRNQA 427
+++ +++ R ++ + + + ++ R
Sbjct: 557 QEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 40.5 bits (93), Expect = 0.001
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 5/139 (3%)
Query: 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370
++K+ + L + + + ++ S + + ++ L R +
Sbjct: 47 DIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTL---RAGNAD 103
Query: 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQAMD 429
+ R+E L+ +++ + E +L + R L + R+
Sbjct: 104 AADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQ 163
Query: 430 LNKR-KAIESAQSAADLKL 447
KR K ++A A L
Sbjct: 164 AEKRQKDAQNADKKAADML 182
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 38.4 bits (89), Expect = 0.002
Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
++ K+++L + + L+ +VA K+ E E++ +++E+ + L+ +
Sbjct: 3 KQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLE 62
Query: 356 DANFKLMTERIK-SNQLHKL-------------AREEKDTLREQVQALSLQIEAMHTAIR 401
K + K ++ L A L + + L ++ A +
Sbjct: 63 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122
Query: 402 KLEEKERFLQTVLTNAEKELH-LRNQAMDLNK 432
+ E+ + L+ + + + L N+ L K
Sbjct: 123 AISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 32.3 bits (73), Expect = 0.21
Identities = 14/90 (15%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
S+++++ + + K+K+ E + ++ V ++ + L +E+ ++ + E+
Sbjct: 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128
Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKL 374
+L ++ E K + +L KL
Sbjct: 129 KQLEDKVEELLS---KNYHLENEVARLKKL 155
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 38.1 bits (89), Expect = 0.007
Identities = 21/173 (12%), Positives = 47/173 (27%), Gaps = 5/173 (2%)
Query: 275 FRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG 334
+ + + R + + ++ EAL E++
Sbjct: 815 VSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQK 874
Query: 335 QAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394
+ +Q+ N R+L++L + + SN+ + L+
Sbjct: 875 KIAVLLQKYN-RILKKLENWA----TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQS 929
Query: 395 AMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL 447
+ L L + N EL R + ++S+ L
Sbjct: 930 LEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982
Score = 37.7 bits (88), Expect = 0.010
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 271 GSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330
+ +A + K+K LE + Q + ++L ++
Sbjct: 886 ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 945
Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
E N + +L E+ D F ++ ++ +
Sbjct: 946 T----------ELNYNGVPELTERKDTFFA----------------QQWTGVKSSAETYK 979
Query: 391 LQIEAMHTAIRKLEE 405
+ A ++K+E+
Sbjct: 980 NTLLAELERLQKIED 994
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 35.9 bits (82), Expect = 0.011
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
DS +L ++ + + QL ++ Q E+++ A E E
Sbjct: 10 DSVEAVGAQLKVYH--QQYQDKSREYDQLYEEYTRTSQ-------ELQMKRTAIEAFNET 60
Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403
+Q + ++ ++ + + + E + + L +I +H + KL
Sbjct: 61 IKIFEEQGQTQEKSSKEYLERFRREGNEK-----EMQRILLNSERLKSRIAEIHESRTKL 115
Query: 404 EEKERFLQTVLTNAEKELH-LRNQAMDLNKRK 434
E++ R + +K ++ L+ M L K +
Sbjct: 116 EQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147
Score = 31.3 bits (70), Expect = 0.44
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQK---------QVATHKQEEEALLNEMEVTGQAFED 339
+ K+ A E IK E+Q +K + +++E + +L E +
Sbjct: 48 QMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAE 107
Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
+ E ++L Q+LR + N ++ R+ +D + + + ++
Sbjct: 108 IHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEW 167
Query: 400 IR 401
+
Sbjct: 168 LG 169
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 35.8 bits (82), Expect = 0.012
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 300 RKIKQLEDQTHQLQKQVATHKQ----------EEEALLNEMEVTGQAFE---DMQEQNSR 346
R+I+ +E++ + Q+++AT Q E E + +E Q E ++QE +
Sbjct: 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK 62
Query: 347 LLQQLREKDDANFKLMTERIKSNQLHKLAREEK-DTLREQVQALSLQIEAMHTAIRKLEE 405
+ + E D ++ + ++ + EE+ + + L +++ + ++ LE+
Sbjct: 63 EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122
Query: 406 KERFLQTVLTNAEKELHLRNQAMDLNKR 433
K K HL N+ L K
Sbjct: 123 KVE------ELLSKNYHLENEVARLKKL 144
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK
snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Length = 104
Score = 34.8 bits (79), Expect = 0.013
Identities = 10/75 (13%), Positives = 33/75 (44%)
Query: 276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335
R F+ + + ++ +E +++ +LE +++ + + E + L +
Sbjct: 13 RDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELEL 72
Query: 336 AFEDMQEQNSRLLQQ 350
+ ++ +N +LL +
Sbjct: 73 ELDRLRAENLQLLTE 87
Score = 27.9 bits (61), Expect = 3.3
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA 357
+ + ++ED+ ++L+ + L E++ + +N QQ R
Sbjct: 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQERAPLSK 101
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 36.3 bits (83), Expect = 0.015
Identities = 23/187 (12%), Positives = 63/187 (33%), Gaps = 20/187 (10%)
Query: 262 LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK 320
L D+ ++ + + R+ V D +K + K LE+ ++Q + +
Sbjct: 46 LLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ 105
Query: 321 QEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN---------- 369
++ + + + ++QE + L +L+EK + M +R +++
Sbjct: 106 KKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAP 165
Query: 370 -------QLHKLAREEKDTLREQVQALSLQIEAMHTAIR-KLEEKERFLQTVLTNAEKEL 421
+L K+ ++ + + + K + L+ L +
Sbjct: 166 YSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESF 225
Query: 422 HLRNQAM 428
+ +
Sbjct: 226 KVSFLSA 232
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 37.2 bits (86), Expect = 0.016
Identities = 20/144 (13%), Positives = 57/144 (39%), Gaps = 4/144 (2%)
Query: 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361
I Q+ ++ + Q+ + L ++ T +D+Q ++ ++L K++ +
Sbjct: 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960
Query: 362 MTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM-HTAIRKLEEKERF--LQTVLTNAE 418
+ + ++ Q ++ +++ L+ Q+ + +I A LE+ E L+ + E
Sbjct: 1961 LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLE 2020
Query: 419 KELHLRNQAMDLNKRKAIESAQSA 442
+ I + + +
Sbjct: 2021 NAA-NELKLKQDEIVATITALEKS 2043
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 36.3 bits (83), Expect = 0.016
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359
++ +QL+ + L ++ + +L E G+ F Q+ L Q L
Sbjct: 24 QEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLER------ 77
Query: 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394
+ A E+D + + A+ +IE
Sbjct: 78 ------------EREAIVERDEVGARKNAVDEEIE 100
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 34.7 bits (79), Expect = 0.017
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365
+ +L ++++ K + E + E + + ++ S L L E+
Sbjct: 14 DHLIERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLR------- 63
Query: 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKER 408
+ A ++ + LR ++ L Q E A R L E ER
Sbjct: 64 -------QQAADDCEFLRAELDELRRQREDTEKAQRSLSEIER 99
Score = 29.3 bits (65), Expect = 1.2
Identities = 12/81 (14%), Positives = 32/81 (39%)
Query: 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
E+ R + QL+ +L+ +A + + ++ E ++++ Q + R +
Sbjct: 37 ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSE 96
Query: 357 ANFKLMTERIKSNQLHKLARE 377
K + ++L + E
Sbjct: 97 IERKAQANEQRYSKLKEKYSE 117
Score = 29.3 bits (65), Expect = 1.3
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
V ++D + E QLE+ + Q+ V K L ++ +
Sbjct: 8 VNKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAA 67
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
+ L +L E + RE+ + + + + + +A
Sbjct: 68 DDCEFLRAELDEL------------------RRQREDTEKAQRSLSEIERKAQANEQRYS 109
Query: 402 KLEEKE 407
KL+EK
Sbjct: 110 KLKEKY 115
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 35.4 bits (81), Expect = 0.022
Identities = 23/136 (16%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 262 LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK 320
L D+ ++ + + R+ V D +K + K LE+ ++Q + +
Sbjct: 47 LLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ 106
Query: 321 QEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN------QLHK 373
++ + + + ++QE + L +L+EK + M +R +++ L
Sbjct: 107 KKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAP 166
Query: 374 LAREEKDTLREQVQAL 389
+ E + L +++AL
Sbjct: 167 YSDELRQRLAARLEAL 182
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 35.6 bits (81), Expect = 0.023
Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ-VATHKQEEEALLNE-----MEVTGQA 336
+ ++ +E ++ LE+Q +++ V TH AL+N+ +E A
Sbjct: 59 SKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAA 118
Query: 337 FEDMQEQNSRLLQQLR-----EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSL 391
+ Q R+L LR E+ + L + + + A++ + + +Q +
Sbjct: 119 LQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEE 178
Query: 392 QIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422
++ + + + L+ + H
Sbjct: 179 RVNQSLGLLDQNPHLAQELRPQIQELLHSEH 209
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 35.2 bits (81), Expect = 0.037
Identities = 21/147 (14%), Positives = 58/147 (39%), Gaps = 2/147 (1%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
++K + LE + ++ + ++L+ +D +E + Q+++
Sbjct: 39 NNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMA 98
Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH-TAIRKLEEKERFLQTVL 414
A + E + +Q + +E+ ++E+ +S + T ++ L +K + L+ L
Sbjct: 99 AARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAEL 158
Query: 415 TNAEKELH-LRNQAMDLNKRKAIESAQ 440
E + + + L+ I +
Sbjct: 159 AAHEPAIQGVLDTGKKLSDDNTIGKEE 185
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 33.0 bits (75), Expect = 0.047
Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365
+ QLQ+++ EEE L+ E+E + + + E ++ + D + E
Sbjct: 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62
Query: 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406
+ R++ + L ++++++ Q+ + KL++K
Sbjct: 63 ------SEFKRQQLE-LDDELKSVENQMRYAQMQLDKLKKK 96
Score = 26.8 bits (59), Expect = 6.7
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 289 ERKKLADEEAMRKIKQLE-------DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
+ L +E +++++ +E + ++Q + QEE E + ++
Sbjct: 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE 377
++ + Q+R QL KL ++
Sbjct: 74 DELKSVENQMRY-------------AQMQLDKLKKK 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 34.3 bits (78), Expect = 0.069
Identities = 18/146 (12%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEE--ALLNEMEVTGQAFE 338
+ +E+ L + + + ++ + +QK+++ K E E +L E ++ +
Sbjct: 48 ILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN 107
Query: 339 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398
+ L +++ K + L K E + E + +++ +
Sbjct: 108 QANREIENLQNEIKRKSEK----------QEDLKKEMLELEKLALELESLVENEVKNIKE 157
Query: 399 AIRKLEEKERFLQTVLTNAEKELHLR 424
+ + +K+ L + R
Sbjct: 158 TQQIIFKKKEDLVEKTEPKIYSFYER 183
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 34.2 bits (77), Expect = 0.070
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
+ +K + A + K + + + + + A + E+ +
Sbjct: 102 MESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRK 161
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
Q + LL+ L EK + +++ I+ N +EK + + + +
Sbjct: 162 YQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKME-SNKENREAHFAAMLE 220
Query: 402 KLEEKERFLQTVLTNAEKE 420
+L+EK++ + V N E +
Sbjct: 221 RLQEKDKHAEEVRKNKELK 239
Score = 34.2 bits (77), Expect = 0.082
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
+ +K +K+ + RK ++ E H +K+ + E E + +E + +E
Sbjct: 143 KMAKEKLAQKMESNKENRKYQEAELLKHLAEKR----EHEREVIQRAIEENNNWIKMAKE 198
Query: 343 QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384
+ ++ ++ +E +A+F M ER++ H + L+E
Sbjct: 199 KLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240
Score = 32.6 bits (73), Expect = 0.25
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
E +K + ++ + +L A ++ + E +++ K +E L +ME
Sbjct: 46 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKME-- 103
Query: 334 GQAFEDMQEQNSRLLQQLREKD-DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ 392
E+ + + +L++L+EKD A ++N K+A+E+ E +
Sbjct: 104 -SNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKY 162
Query: 393 IEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQ 440
EA ++ L EK + V+ A +E + + + +ES +
Sbjct: 163 QEA--ELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNK 208
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 32.9 bits (74), Expect = 0.071
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
Query: 284 DSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
++ E + L A + +QLE + LQ+Q + + +E +
Sbjct: 19 EAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAA 78
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394
+ R L QL+ F+ IKS+ + R+ L + Q L E
Sbjct: 79 SEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGS-ERKRGMQLEDLKQQLQQAEE 130
Score = 27.6 bits (60), Expect = 4.8
Identities = 19/111 (17%), Positives = 42/111 (37%)
Query: 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396
++QE SRL +E + ++ QL + QV L +Q +++
Sbjct: 8 LGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSV 67
Query: 397 HTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL 447
A+R + + L + H Q D + + ++ ++ ++L
Sbjct: 68 EAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQL 118
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 32.7 bits (74), Expect = 0.071
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 282 VRDSKRDERKKLADEEA----MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF 337
++ +R + + + + ++LE Q +LQ++V E ++ E++ +
Sbjct: 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKY 95
Query: 338 EDMQEQNSRLLQ 349
E +Q + +
Sbjct: 96 EALQNFARTVAR 107
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell
surface, secretory P metal binding protein; 2.00A {Homo
sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Length = 211
Score = 33.7 bits (76), Expect = 0.087
Identities = 25/162 (15%), Positives = 62/162 (38%), Gaps = 14/162 (8%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ-VATHKQEEEALLNE-----MEVTGQA 336
++ + ++K + + K++ LE + ++Q V TH EA+LN+ +E A
Sbjct: 53 KNLPKADKKAVI-QHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITA 111
Query: 337 FEDMQEQNSRLLQQLR-----EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSL 391
+ + + + L+ E+ D L K A + + + ++ +
Sbjct: 112 LQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYE 171
Query: 392 QIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKR 433
++ + + + +Q + E +N + D+ R
Sbjct: 172 RMNQSLSLLYNVPAVAEEIQDEV--DELLQKEQNYSDDIEGR 211
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 34.3 bits (78), Expect = 0.087
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 21/159 (13%)
Query: 285 SKRDERKKLADEEAMRK--------IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
S++D+ K EA+ + + QL ++ Q E+++ A
Sbjct: 2 SQQDQVVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQ-------ELQMKRTA 54
Query: 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396
E E +Q + ++ ++ + +E + + L +I +
Sbjct: 55 IEAFNETIKIFEEQGQTQEK-----CSKEYLERFRREGNEKEMQRILLNSERLKSRIAEI 109
Query: 397 HTAIRKLEEKERFLQTVLTNAEKELH-LRNQAMDLNKRK 434
H + KLE+ R + +K ++ L+ M L K +
Sbjct: 110 HESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIR 148
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 32.9 bits (74), Expect = 0.096
Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 2/122 (1%)
Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
+++ + + + + LE + + +K + + N V + E +
Sbjct: 16 KEALELAIDQASRDYH--RATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITR 73
Query: 343 QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK 402
+ L +L +E+ + EEK Q+L ++A A ++
Sbjct: 74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133
Query: 403 LE 404
+E
Sbjct: 134 VE 135
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A
{Homo sapiens}
Length = 81
Score = 31.7 bits (71), Expect = 0.10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQV 386
L ME + E+ Q + LLQ+LR +L ER + K + E L+EQV
Sbjct: 4 LVGMEKEQREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63
Query: 387 QALSLQIEAMHTAIRK 402
+IE +H+ + +
Sbjct: 64 ALKDAEIERLHSQLSR 79
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 34.1 bits (77), Expect = 0.12
Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372
QK++ + + + + +E ++ ED+Q++ + L+ + E +
Sbjct: 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR---------EHETNGVAK 54
Query: 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431
++E+ L++ L + + + I +L Q L N E R Q
Sbjct: 55 SDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACI 113
Score = 30.6 bits (68), Expect = 1.5
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 21/161 (13%)
Query: 287 RDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346
R+ + K+ E +IK LED + + T + E + + + + ++
Sbjct: 12 RNVKDKVMCIE--HEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYL 69
Query: 347 LLQQLREKDDANFKLMTERIKSNQLHKLARE-------------------EKDTLREQVQ 387
+L R++ + + Q + E D L+
Sbjct: 70 MLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFT 129
Query: 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428
++ ++ + ++KLEE E+ K +
Sbjct: 130 IVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRT 170
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 31.8 bits (72), Expect = 0.12
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR 383
EA+ +M++ E+ ++ + ++ +D +L E+ + K +E +
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64
Query: 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430
E V+ A KLE+ E+ T+AE E+ N+ + L
Sbjct: 65 ESVK----------EAQEKLEQAEK----KATDAEAEVASLNRRIQL 97
Score = 31.0 bits (70), Expect = 0.24
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 292 KLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351
KL E A+ + +Q E Q + + ++E++ L +++ T E E ++L
Sbjct: 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74
Query: 352 REKDDA 357
+ +
Sbjct: 75 EQAEKK 80
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 34.1 bits (77), Expect = 0.14
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 5/174 (2%)
Query: 260 RSLSDSASNIYG-SLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT 318
+ S + G +L F K + + + K A ++ + +++ E L+K+V
Sbjct: 580 KDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE----HLEKEVEK 635
Query: 319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE 378
+ + N+ME QA E + + ++ A + +L +
Sbjct: 636 KLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKI 695
Query: 379 KDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432
L++ ++ + K EE + L+ + + ++ +LN
Sbjct: 696 SKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNA 749
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 30.5 bits (69), Expect = 0.15
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 487 DCLRTRYETRQRKCPKCNAKA--NDYHRLYL 515
CLR CP C K YH +Y+
Sbjct: 35 QCLR-DSLKNANTCPTCRKKINHKRYHPIYI 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 30.6 bits (69), Expect = 0.16
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 487 DCLRTRYETRQRKCPKCNAKA--NDYHRLYL 515
CLR CP C K YH +Y+
Sbjct: 42 QCLR-DSLKNANTCPTCRKKINHKRYHPIYI 71
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 33.1 bits (75), Expect = 0.21
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 4/137 (2%)
Query: 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353
AD I QLE++ L K L N ++ T + + + L
Sbjct: 63 ADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWS 122
Query: 354 KDDANFKLMTERIKSNQLHKLAREEK-DTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
+ N E +E++ + L+++ L + H A K+E LQT
Sbjct: 123 DKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQL---VLNQHPASDKIEAYMDTLQT 179
Query: 413 VLTNAEKELHLRNQAMD 429
+ + + +
Sbjct: 180 QWSWILQITKCIDVHLK 196
Score = 28.1 bits (62), Expect = 8.4
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 289 ERKKLADEEAMRKIKQLED--QTHQLQKQVATHKQEEEALLNEME--VTGQAFEDMQEQN 344
+ + L++ Q ++ Q EA L ++ + + D
Sbjct: 179 TQWSWILQITKCIDVHLKENAAYFQFFEEA----QSTEAYLKGLQDSIRKKYPCDKNMPL 234
Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLARE----------EKDTLREQVQAL 389
LL+Q++E + K++ + + L +++ + ++AL
Sbjct: 235 QHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRAL 289
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 32.2 bits (73), Expect = 0.24
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 6/131 (4%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
+ + L + HQ +++ Q+ + EM +A + + Q R+
Sbjct: 61 SACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDAS 120
Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415
A + + LA + + V+ L + EA + E+ L+ T
Sbjct: 121 VAE-AWLIAQE-----PYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTT 174
Query: 416 NAEKELHLRNQ 426
KE + +
Sbjct: 175 LELKERQIAER 185
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo
sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Length = 121
Score = 31.4 bits (70), Expect = 0.25
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVAT------HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349
+ +R + + + TH LQ+++ + + A N + A D ++ +
Sbjct: 14 RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKV 73
Query: 350 QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE 394
+ +L E N + A E + LR + Q LS++I
Sbjct: 74 E---------ELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 0.28
Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
+ + + E ++ L +L ++E++ + VQ + + + A ++L EK L+
Sbjct: 314 DSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKK 373
Query: 413 VLTNAEKELH-----LRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDRE 467
+ + +K+L L ++ +RK + + G L+ K+++
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQ-------AGGSQTLKRDKEKK 426
Score = 28.6 bits (63), Expect = 5.2
Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM 362
+LE+ + + +E + + +E+ ++ Q ++ +A K
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 363 TERI--KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKER 408
+ + K ++L KL ++EK L ++ ++L ++ A E +
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQS 408
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic
vesicle, protein transport, transport, vacuole; 2.80A
{Saccharomyces cerevisiae}
Length = 152
Score = 31.4 bits (70), Expect = 0.35
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
D+ + L E ++I++L++ K + E V Q D+
Sbjct: 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQ 370
++++S+L+ + +K + + M I +
Sbjct: 123 KKEHSQLVARWLKKTEKETEAMNSEIDGTK 152
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 31.0 bits (71), Expect = 0.37
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE-----KERF------ 409
L E +++L + + E LR +Q L +++++ + LE K R+
Sbjct: 22 LNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81
Query: 410 LQTVLTNAEKELH 422
+Q ++ + E++L
Sbjct: 82 IQEMIGSVEEQLA 94
Score = 28.3 bits (64), Expect = 3.0
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-----EME 331
R + + I +E+Q QL+ ++ QE + LL+ E E
Sbjct: 73 GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 29.9 bits (68), Expect = 0.37
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-----EME 331
+ + + R + + E + +++ ++ E + LL+ +ME
Sbjct: 24 DSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.2 bits (68), Expect = 0.41
Identities = 11/66 (16%), Positives = 28/66 (42%)
Query: 292 KLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351
KL E A+ + +Q E +++ + + L ++ VT + + + E+ + L
Sbjct: 15 KLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74
Query: 352 REKDDA 357
++
Sbjct: 75 LFAEEN 80
Score = 30.2 bits (68), Expect = 0.47
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 28/110 (25%)
Query: 312 LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL 371
++K++ K ++E L+ E QA D + R Q + +L
Sbjct: 7 IKKKMQMLKLDKENALDRAE---QAEADKKAAEERSKQLEDDIVQLEKQL---------- 53
Query: 372 HKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421
++ + +D + E+ +H + L E AE E+
Sbjct: 54 -RVTEDSRDQVLEE----------LHKSEDSLLFAEE----NAAKAESEV 88
>1s8n_A Putative antiterminator; RV1626, structural genomics,
transcriptional antiterminator, component system, PSI;
1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB:
1sd5_A
Length = 205
Score = 31.2 bits (71), Expect = 0.51
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 374 LAREEKDT-LREQVQALSLQIEAMHTAIRKLEEKERFLQTV---LTNAEKELHLRNQAMD 429
++R + T L +V LS ++E RKL E+ + L +T + ++ AMD
Sbjct: 129 VSRFREITALEGEVATLSERLET-----RKLVERAKGLLQTKHGMTEPDAFKWIQRAAMD 183
Query: 430 LNKR 433
Sbjct: 184 RRTT 187
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 29.4 bits (67), Expect = 0.53
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-----EME 331
E + I +L+D+ +++++A H +E + LLN ++E
Sbjct: 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 31.9 bits (72), Expect = 0.56
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 28/126 (22%)
Query: 282 VRDSKRDERKKLAD-----EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
V+ RD + ++A + + ++++ + QKQ + EME
Sbjct: 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEME----- 152
Query: 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396
+ + L ++ +++ I D+L +++Q L I
Sbjct: 153 -----LHYNYIKDNLDNNIPSSLRVLRAVI-------------DSLHKKIQKLENAIATQ 194
Query: 397 HTAIRK 402
R
Sbjct: 195 TDYCRS 200
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 0.58
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
E+ + Q Q L+ ++ + +E L + QA +D+ E+ R E
Sbjct: 24 EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL-ERAKRATIVSLEDF 82
Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQ 387
+ ER N + +EK++L VQ
Sbjct: 83 EQRLNQAIER---NAFLESELDEKESLLVSVQ 111
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 31.0 bits (70), Expect = 0.59
Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 15/127 (11%)
Query: 300 RKIKQLEDQTHQLQKQVATHK------------QEEEALLNEMEVTGQAFEDMQEQNSRL 347
+ + + QK VA+ Q+ + +E++ +++ ++E ++
Sbjct: 7 QDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKV 66
Query: 348 LQQLREKDDANFKLMTERIKS--NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405
+Q + + E + + + L ++ TL + + Q + A L
Sbjct: 67 IQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQ-KDAKQAEAILSN 125
Query: 406 KERFLQT 412
+E L
Sbjct: 126 QEYTLAH 132
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 31.3 bits (70), Expect = 0.62
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 23/104 (22%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV--TGQAFEDMQEQNSR 346
R +++QL + L++Q+ + ++ + + +NS+
Sbjct: 13 PRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSK 72
Query: 347 LLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
L++ L+E AR++ LRE+V L
Sbjct: 73 LMETLKE---------------------ARQQLLALREEVDRLG 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 30.2 bits (69), Expect = 0.70
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 11/73 (15%)
Query: 361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE-----KERF------ 409
L + + + E + +Q L +I+ + L+ ++R
Sbjct: 20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD 79
Query: 410 LQTVLTNAEKELH 422
+ L E+ L
Sbjct: 80 ARNKLAELEEALQ 92
Score = 27.5 bits (62), Expect = 6.2
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-----EME 331
+R +LA ++A K+ +LE+ + ++ +A +E + L+N ++E
Sbjct: 71 QRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 31.8 bits (71), Expect = 0.71
Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 12/155 (7%)
Query: 277 KFACVVRDSKRDERKKLADEEAMRKIKQ---LEDQTHQLQKQVATHKQEEEALLNEMEVT 333
+ + ++ ++ERK L + + + + QK++ + + + + +E
Sbjct: 100 QMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHE 159
Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
++ ED+Q++ + L+ ++ + K QL L++ L +
Sbjct: 160 IKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLL---------LKKMYLMLDNKR 210
Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM 428
+ + I +L Q L N E R Q
Sbjct: 211 KEVVHKIIELLNVTELTQNALINDELVEWKRRQQS 245
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 30.7 bits (70), Expect = 0.74
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ +T+++ +L +AR+E D L+EQ++ + M T +R +
Sbjct: 100 RTVTDQV--GRLTAVARDEGDFLGEQFMQWFLQEQIEE----VALMATLVRVAD 147
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 29.0 bits (65), Expect = 0.77
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA 435
+ +K+ ++ + +A ++LE++ LQ L E EL ++++ + K
Sbjct: 12 KLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK- 70
Query: 436 IESAQSAAD 444
+E A A
Sbjct: 71 LELADKKAT 79
Score = 29.0 bits (65), Expect = 0.87
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 292 KLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351
KL E A+ + +Q E +++ + E AL +++ T + E ++L
Sbjct: 12 KLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71
Query: 352 REKDDA 357
D
Sbjct: 72 ELADKK 77
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.5 bits (70), Expect = 0.81
Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 8/145 (5%)
Query: 287 RDERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
R E ++A++ Q+++ + + + E L + A Q
Sbjct: 495 RAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP---SANPAKTMQG 551
Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
S ++ L+ ++ ER L + + + Q ++ +
Sbjct: 552 SEVVNVLKSLLSNLDEVKKER---EGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVT 608
Query: 405 EKERFLQTVLTNAEKELHLRNQAMD 429
E +R + T ++ L + +
Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLLK 633
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: a.2.5.1
Length = 133
Score = 29.9 bits (67), Expect = 0.85
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHL 423
L ++ + + + QV+ + Q+EA+ I +LE E+ L + E +
Sbjct: 2 ALAEIVAQ-LNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLV 54
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A
{Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1
PDB: 1sc5_A
Length = 239
Score = 30.6 bits (70), Expect = 0.87
Identities = 17/139 (12%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
R R R++ +++ +E + K+ +L ++ +E + E+ ++
Sbjct: 83 YLRSLDFGSR-QVREKERRI--KEVVEKL------KEKLGREP-----TDEEVAKELGIS 128
Query: 334 ----GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389
+ + + L+++ ++ + + + + RE + ++E
Sbjct: 129 TEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSSTNVEEEVIKRELTEKVKE----- 183
Query: 390 SLQIEAMHTAIRKLEEKER 408
A+ KL E+E+
Sbjct: 184 ---------AVSKLPEREK 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.87
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 97 ER--MKKIEQAGTLDETTPWDS--SFGIFRLSSTV 127
E+ +KK++ +L DS + I +T+
Sbjct: 18 EKQALKKLQ--ASLKLYAD-DSAPALAI---KATM 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.5 bits (68), Expect = 0.89
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LRNQAMDLNKRKAIES 438
D L ++ QI++ + L + L L E+ L+ Q LN +
Sbjct: 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61
Query: 439 AQSAADLK 446
Q++ +
Sbjct: 62 TQTSQQAE 69
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 31.4 bits (70), Expect = 0.90
Identities = 17/113 (15%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365
+ Q+ + H Q+ + ++E + E++Q+ + L+ + D +
Sbjct: 8 AAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGD-------MQ 60
Query: 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAE 418
+ + R++ L + + AL ++ + + L ++Q LT+ E
Sbjct: 61 DLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEE 113
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331
++K+ E + K+LE + L+++ + +E + L + +E
Sbjct: 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 29.9 bits (68), Expect = 1.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
K +++ I +L LA EEKD + EQV+ ++ + KL+
Sbjct: 95 KFISKSI--YELAALAEEEKDYSTRAFLEWFINEQVEE----EASVKKILDKLK 142
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ +T++I N+L +A +D + EQ + + + KLE
Sbjct: 104 QKITQQI--NKLAHVAFTSQDYSTFNFLQWYVAEQHEE----EKLFKGILDKLE 151
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 30.2 bits (67), Expect = 1.2
Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 274 EFRKFACVVRDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331
+F+K V + D ++K + + +++ +L + K+ ++ LN+ +
Sbjct: 95 DFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQND 154
Query: 332 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE 384
T Q + ++ + + KL K ++ ++EK + +
Sbjct: 155 ATQQ----------GVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQDVDQ 197
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane,
adapter prote organelle division; 2.70A {Saccharomyces
cerevisiae}
Length = 72
Score = 28.4 bits (63), Expect = 1.2
Identities = 8/56 (14%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 290 RKKLADEEAMR---KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
+K E +++ L + +L ++A +Q + L + ++ + ++E
Sbjct: 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 29.9 bits (68), Expect = 1.2
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ +T+ I + +LA EEKD + EQV+ + + + LE
Sbjct: 109 EFVTQSI--YNILELASEEKDHATVSFLKWFVDEQVEE----EDQVREILDLLE 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 27.8 bits (62), Expect = 1.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME 331
R++ + + QLED+ LQ ++A +E+E L +
Sbjct: 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/78 (10%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 292 KLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS-RLLQQ 350
++ + + +++ ++ +K++ K + ++ E +E +S +++ +
Sbjct: 24 RVEPAKLPKTVERFFEEWKDQRKEIERLKSV----IADLWA-DILMERAEEFDSMKVVAE 78
Query: 351 LREKDDANFKLMTERIKS 368
+ + D + + ER+
Sbjct: 79 VVDADMQALQKLAERLAE 96
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 30.6 bits (68), Expect = 1.4
Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
Query: 289 ERKKLADEEAMRK-IKQLEDQ---THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
E K + + ++K K LE L+K+V + + N+ME QA + Q+
Sbjct: 342 EAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQA--NSQKDE 399
Query: 345 SRLLQQLREKDDANFKLMTERIK------SNQLHKLAREEKDTLREQVQALSLQIEAMHT 398
L DA T+ +K S++L K++++ KD + + + + +
Sbjct: 400 IFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSK 459
Query: 399 AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIES------AQSAADLKLHLVII 452
A L+ + ++ + N E + N LN+ K ++ Q+ +DL+ + +
Sbjct: 460 AEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDV 519
Query: 453 YTN 455
N
Sbjct: 520 IIN 522
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 29.5 bits (67), Expect = 1.5
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ T + L + A D +QV + + + + K+
Sbjct: 96 QANTRSL--LNLAEAASTCHDFAVMAFLNPFHLQQVNE----EDKIGSILAKVT 143
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+T+RI ++L ++A +EKD + EQV+ + + KL
Sbjct: 97 VNVTKRI--HELVEMAMQEKDFATYNFLQWYVAEQVEE----EASALDIVEKLR 144
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function
project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Length = 112
Score = 28.8 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
+ L Q Q+Q+++ QEE + ++EVTG++
Sbjct: 7 KGGLGGLMKQAQQMQEKMQK-MQEE---IAQLEVTGES 40
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 30.2 bits (67), Expect = 1.7
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 296 EEAMRKIKQLEDQTHQLQKQV--ATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353
+ + I+Q +Q QL + A K++ + L +++ T + + L+Q+ +
Sbjct: 54 RDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEK 113
Query: 354 KDDANFKLMT---------ERIKSNQLHKLAREEKDTLRE 384
++ + T RI+ +Q L+R+ +
Sbjct: 114 ENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTR 153
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+L+T++I N+L A +D + EQ + + + I KL
Sbjct: 95 QLITQKI--NELAHAAMTNQDYPTFNFLQWYVSEQHEE----EKLFKSIIDKLS 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEAL 326
++ K+ + E K+ +L + +LQK+V +E L
Sbjct: 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat,
mitochondrial fission, mitochondri cytoplasm, apoptosis;
3.90A {Saccharomyces cerevisiae S288C}
Length = 242
Score = 29.8 bits (66), Expect = 1.7
Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 290 RKKLAD---EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
+K + +++ L + +L ++A +Q + L + ++ + ++E
Sbjct: 171 QKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYG 228
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 28.0 bits (62), Expect = 1.9
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 287 RDERKKLADEEAMRK--------IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338
+ +R+ L + + LE++ QL +QV KQE L E + E
Sbjct: 27 KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86
Query: 339 DMQ 341
+
Sbjct: 87 KLA 89
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor,
phosphoprotein, UBL conjugation, DNA-binding,
polymorphism; HET: DNA; 3.30A {Homo sapiens}
Length = 209
Score = 29.3 bits (64), Expect = 2.1
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
E+++ A EA+++ ++L + Q ++A K+E + L E Q ++ E+
Sbjct: 104 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV-QYMAELIER--LNG 160
Query: 349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
+ L + + + ++ + + E T E + S
Sbjct: 161 EPLDNFESLDNQEFDSEEETVEDSLVEDSEIGTCAEGTVSSS 202
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 29.8 bits (67), Expect = 2.3
Identities = 8/59 (13%), Positives = 24/59 (40%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354
+ + ++++ ++ L++ +H + + L V Q +Q+Q + Q
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 29.1 bits (66), Expect = 2.3
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ +T+ I N L + KD + EQ + + K++
Sbjct: 95 QFITKSI--NTLVEHMLTHKDYSTFNFLQWYVSEQHEE----EALFRGIVDKIK 142
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.9 bits (66), Expect = 2.3
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 296 EEAMRKIKQLEDQTHQLQKQV----ATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL 351
E+ + ++Q E + ++ H+Q +EAL+ + + T E ++ +LL
Sbjct: 641 EDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLT-- 698
Query: 352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL 389
+ I + L R+ K +EQ+
Sbjct: 699 ---------TIARTINEVENQILTRDAKGISQEQMNEF 727
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330
+++K+ + +K + L QLQ +V + E L +
Sbjct: 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA
replication, replication; HET: DNA MSE; 2.80A
{Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Length = 148
Score = 28.7 bits (64), Expect = 2.5
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 335 QAFEDMQEQNSRLLQQL----REKDDANFKLMTERIK----SNQLHKLAREEKDTLREQV 386
+ ++ + L ++L + + E + + L KL+ + +
Sbjct: 39 ENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIA 98
Query: 387 QAL------SLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKR 433
+ + + +L +ER L+N E+ L +L K+
Sbjct: 99 EQTFTDSLNHMFDSLLELRQEELIARER--THGLSNEERLE-LWTLNQELAKK 148
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein structure
initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 27.4 bits (61), Expect = 2.6
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEAL--LNEMEVTGQAFE--DMQEQNSRLLQQL 351
E+ + ++LE + +L+ +++ E+AL L+E + E LL+ L
Sbjct: 3 EQLSPRDQELEARLVELETRLSFQ---EQALTELSE-ALADARLTGARNAELIRHLLEDL 58
Query: 352 REKDDANF 359
+ F
Sbjct: 59 GKVRSTLF 66
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 28.0 bits (63), Expect = 2.6
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
QL ++K+ + +E+ + T ++
Sbjct: 5 FSQLGGLLDGMKKEFSQ-LEEK---NKDTIHTSKS 35
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 29.1 bits (65), Expect = 2.6
Identities = 19/154 (12%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL 361
+ L + L+ ++ H+ + L ++ + + Q + + + +
Sbjct: 38 VNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSM 97
Query: 362 MTERIKS-------NQLHKLAREEKDTLRE-QVQALSLQIEAMHTAIRKLEEKERFLQTV 413
R +Q + +E+ ++E ++ S T ++ L +K + L+
Sbjct: 98 AAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE 157
Query: 414 LTNAEKELH-LRNQAMDLNKRKAIESAQSAADLK 446
L E + + + L+ I + L
Sbjct: 158 LAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLA 191
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, leucine zipper, fusion protein; 1.9A
{Saccharomyces cerevisiae} SCOP: h.1.20.1
Length = 59
Score = 26.9 bits (60), Expect = 2.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN 328
++ K+++L + + L+ +VA K+ LLN
Sbjct: 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLN 35
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.2 bits (65), Expect = 3.2
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 15/140 (10%)
Query: 294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE 353
A I + +D +++ + LL + F E +L + E
Sbjct: 180 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAE----ILGLIDE 235
Query: 354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTV 413
K R + A + R A + + +++ ++ LQT
Sbjct: 236 K---------HRELPEDVGLDASTAESFHRVH-TAFERDVHLLGVQVQQFQDVATRLQTA 285
Query: 414 LTNAEKELHLRNQAMDLNKR 433
+ E ++N+ +++
Sbjct: 286 YAGEKAE-AIQNKEQEVSAA 304
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.5 bits (66), Expect = 3.2
Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 296 EEAM-RKIKQLEDQTHQLQKQVATHKQEEEALLNEME-----VTGQAFEDMQEQN----- 344
E + K+K+LED+ ++ + + +E E+E + G+A +++++
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 345 SRLLQQLR---EKDDANFKLMTERIKSNQLHKLAREEK--DTLREQVQALSLQIEAMHTA 399
++ + ++D + + ++ + E R+++ AL IE
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG 211
Query: 400 IR 401
++
Sbjct: 212 MQ 213
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} SCOP: h.1.28.1 PDB:
2zxx_A*
Length = 83
Score = 27.5 bits (60), Expect = 3.3
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
E+++ A EA+++ ++L + Q ++A + +E L E+ Q ++ E+
Sbjct: 27 EQRRKALYEALKENEKLHKEIEQKDSEIARLR-KENKDLAEVAEHVQYMAEVIER 80
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase,
actin-bindi protein binding, cytoskeleton regulator;
2.70A {Drosophila melanogaster}
Length = 190
Score = 28.9 bits (64), Expect = 3.4
Identities = 14/168 (8%), Positives = 53/168 (31%), Gaps = 5/168 (2%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME--VTGQAFEDMQ 341
+ ++K +E ++ + Q + Q+ ++ + L ++ + +
Sbjct: 9 PTNLIKQKM---DELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEA 65
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
+ + + L ++ + ++E+ L + L Q+E
Sbjct: 66 SKFRTHVDAVGNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKS 125
Query: 402 KLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
+E + + +L + +N + + + +++
Sbjct: 126 DIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKG 173
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 27.6 bits (62), Expect = 3.4
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN-----EME 331
+ + + R + E + +++ Q+ + E LL+ +ME
Sbjct: 33 DLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus
horikoshii}
Length = 151
Score = 28.4 bits (63), Expect = 3.6
Identities = 3/47 (6%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346
+++K+ ++ + Q +A ++ + + + + + + +
Sbjct: 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQ---EVQQKQSMTSFK 148
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear
membrane LEFT-handed coiled coil, right-handed coiled
coil; HET: MSE; 2.40A {Homo sapiens}
Length = 74
Score = 26.9 bits (60), Expect = 3.8
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLN 328
+ + R + + E + +++ ++ E + LL+
Sbjct: 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 40
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 28.5 bits (62), Expect = 3.9
Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK 360
K +++ ++++ + E+E L + ++ +L +QL + ++
Sbjct: 14 KKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAI 73
Query: 361 LMTERIKSNQLHKLAREEKDT--LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAE 418
L + +L+ EE+ +E V A S ++E + K ++E +
Sbjct: 74 LKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWM 133
Query: 419 KELHLRNQAMDLNKRKAIESA 439
KE + ++ +
Sbjct: 134 KEALKEEARQEEKEQDEMGQL 154
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 28.1 bits (62), Expect = 3.9
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 25/131 (19%)
Query: 294 ADEEAMRKIKQ-LEDQTHQLQKQVATHKQEEE--ALLNEMEVTGQAFEDMQEQNSRLLQQ 350
EE ++++ + ++ + K+ + + E + + + F ++ L
Sbjct: 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF-KAKKMADSLSLD 83
Query: 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410
+ KD +E L+ ++ A ++ E+ I++L+ +
Sbjct: 84 IENKD---------------------KEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122
Query: 411 QTVLTNAEKEL 421
Q + E EL
Sbjct: 123 QKNIVKLETEL 133
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 28.5 bits (64), Expect = 3.9
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 16/55 (29%)
Query: 360 KLMTERIKSNQLHKLAREEKDT----------LREQVQALSLQIEAMHTAIRKLE 404
KL E++ LH +A + D L EQV+A I+ + + +L
Sbjct: 141 KLTNEKL--LNLHSVATKNGDVQLADFVETEYLGEQVEA----IKRISEYVAQLR 189
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif,
transcription activator/DNA complex; 2.85A
{Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Length = 72
Score = 26.7 bits (59), Expect = 4.1
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ 315
+ C+++ R K+ +E ++ K+L L
Sbjct: 32 KNVPCILKRDFRRTYKRARNEAIEKRFKELTRTLTNLTSD 71
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 28.5 bits (64), Expect = 4.3
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 16/55 (29%)
Query: 360 KLMTERIKSNQLHKLAREEKDT----------LREQVQALSLQIEAMHTAIRKLE 404
KL +++ L +A + KD L EQV A ++ + +L
Sbjct: 136 KLNFQKL--QALQAIADKHKDAALCDFVEGGLLSEQVDA----VKEHAVYVSQLR 184
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 28.4 bits (64), Expect = 4.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 16/55 (29%)
Query: 360 KLMTERIKSNQLHKLAREEKDT----------LREQVQALSLQIEAMHTAIRKLE 404
K + + + +LHKLA ++ D L EQV+A I+ + + L
Sbjct: 109 KNVNQSL--LELHKLATDKNDPHLCDFIETHYLNEQVKA----IKELGDHVTNLR 157
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 27.2 bits (60), Expect = 4.4
Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA 388
EM+ + + M+E ++ + +E ++ N L+ ++ N L ++ +D + E +
Sbjct: 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK---NDLFGSMKQLEDKVEELLSK 71
Query: 389 LSLQIEAMHTAIRKLEEK 406
+ + + E+
Sbjct: 72 NYHLENEVARLKKLVGER 89
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 28.5 bits (63), Expect = 4.5
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 7/190 (3%)
Query: 285 SKRDERKKLAD-EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
D + + L + +K++ + + LL E E Q
Sbjct: 32 VGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAA 91
Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI-----EAMHT 398
+ + + E Q RE + L++ +AL + +
Sbjct: 92 LQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTR 151
Query: 399 AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPA 458
L++ + + + L +A + + K +L L+ +
Sbjct: 152 LEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKP-RHPAHPMRGRLPLLAVCDYKQV 210
Query: 459 RLEFGKDREF 468
+ K E
Sbjct: 211 EVTVHKGDEC 220
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 360 KLMTERIKSNQLHKLAREEKDT---------LREQVQALSLQIEAMHTAIRKLE 404
+ ++E I N + A + KD + EQ + + K+E
Sbjct: 109 QHISESI--NNIVDHAIKSKDHATFNFLQWYVAEQHEE----EVLFKDILDKIE 156
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 28.8 bits (64), Expect = 5.1
Identities = 11/116 (9%), Positives = 34/116 (29%), Gaps = 8/116 (6%)
Query: 281 VVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
V + R+ + + + + + + + E ++ +
Sbjct: 619 TVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHED 678
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396
E ++L + + ++ L +E L +Q Q ++E +
Sbjct: 679 TENVINGPEELYGTYEY--------LLGMRIWSLTKERYQKLLKQKQEKETELENL 726
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT
domain, intracellular trafficking, protein transport;
2.41A {Homo sapiens} SCOP: h.1.27.2
Length = 112
Score = 27.6 bits (60), Expect = 5.1
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
+ ++++L E+ +++ ED +HQ+ V + E L + QA D+QEQ
Sbjct: 23 EKTMKDKQEL--EDFIKQ--SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQ 78
Query: 344 NSRLLQQLREKDDANFKLMTE 364
+ L+Q + + +L +
Sbjct: 79 MAVLMQSREQVSEELVRLQKD 99
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 28.2 bits (62), Expect = 5.5
Identities = 22/177 (12%), Positives = 67/177 (37%), Gaps = 17/177 (9%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM--E 331
E ++ ++ K+ E++ E K ++ Q + + + + ++ + E+
Sbjct: 23 ELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKER 82
Query: 332 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK---SNQLHKL-AREEKDT--LREQ 385
+ + +E + + ++ + +TE + +L L E + ++++
Sbjct: 83 LEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKK 142
Query: 386 VQALSL-QIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQS 441
++A L +I+ M + +ER KE++ + + K + +
Sbjct: 143 LEAKRLDRIQVMMRSTSDKAAQERLK--------KEINNSHIQEVVQTIKLLTEKTA 191
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 27.8 bits (61), Expect = 5.7
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 297 EAMRKIKQ-LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354
+KI QT L++Q+ + + E ALL + ++ L Q+L E+
Sbjct: 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 27.7 bits (62), Expect = 5.7
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE 420
+++Q + I+ ++K+++K + +++A
Sbjct: 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANAT 138
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 26.2 bits (57), Expect = 5.8
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 284 DSKRDERKKLADEEAMR--------KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ 335
D + ++K + A R +K LE Q L++ ++ E + L ++
Sbjct: 5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV----- 59
Query: 336 AFEDMQEQNSRL 347
++E+ L
Sbjct: 60 --RQLEEELRIL 69
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.2 bits (62), Expect = 6.9
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 21/165 (12%)
Query: 289 ERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR 346
E KKL E + + ++ Q + + QE + ++ + E ++ ++
Sbjct: 34 ELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQ 93
Query: 347 LLQQLREKDDANFKLMTERIKSNQLHKLARE-------------------EKDTLREQVQ 387
LQQ R + + + ++ Q L E D L+ +
Sbjct: 94 TLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCE 153
Query: 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432
L+ I IR+ E + L E + D+
Sbjct: 154 KLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIIS 198
Score = 27.9 bits (61), Expect = 10.0
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL--- 361
+ + Q+ ++ + + NE+ + + QE Q+ +L
Sbjct: 10 MSQKHLQINQRFEELRLITQDTENEL----KKLQQTQEYFIIQYQESLRIQAQFAQLGQL 65
Query: 362 --MTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAE 418
+ L + + L+ + Q L + +K + R QT++ + E
Sbjct: 66 NPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDE 124
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 28.4 bits (63), Expect = 7.0
Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 4/133 (3%)
Query: 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
EA+ + + ++ + +++ E ++ A E + L ++D+
Sbjct: 139 EAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 198
Query: 357 ANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN 416
+ + ++ +LARE+ LR Q I+A + +E+ L V
Sbjct: 199 EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVF-- 256
Query: 417 AEKELHLRNQAMD 429
K+ L + D
Sbjct: 257 --KQFRLVPKQFD 267
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.6 bits (63), Expect = 7.0
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 179 HCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTS 236
+F S + V ++ RF++ Y FS + F S+
Sbjct: 495 ITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDF 552
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 27.3 bits (61), Expect = 8.0
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 16/55 (29%)
Query: 360 KLMTERIKSNQLHKLAREEKDT----------LREQVQALSLQIEAMHTAIRKLE 404
K + + + LH +A ++ D L E V+ I+ + I L+
Sbjct: 105 KSVNQAL--LDLHAVAADKSDPHMTDFLESPYLSESVET----IKKLGDHITSLK 153
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 27.3 bits (60), Expect = 8.0
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 291 KKLADEEAMRKIKQLEDQTHQLQKQVA-------------THKQEEEALLNEMEVTGQAF 337
K+ A+ E I + Q QL+++ + +E + N +
Sbjct: 27 KEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKR 86
Query: 338 EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK-DTLREQVQA 388
+++EQ LLQQ + + M + ++ QL + D L E++Q
Sbjct: 87 SELEEQKRNLLQQQAQVRELE---MDQIVEQGQLESSCEIKVGDNLVEKMQV 135
>2l82_A Designed protein OR32; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, de novo protein; NMR {Artificial gene}
Length = 162
Score = 27.4 bits (60), Expect = 8.4
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 289 ERKKLADEEAMRK-IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347
+ + + D+E R+ I+++ ++ QL V ++E + E+ +E+ +
Sbjct: 54 DVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWI-------KDFIEEAKERGVEV 106
Query: 348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQ 387
KDD K + +S+ + +K+ L EQV+
Sbjct: 107 FVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVR 146
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 27.3 bits (60), Expect = 8.6
Identities = 13/137 (9%), Positives = 47/137 (34%), Gaps = 15/137 (10%)
Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM--- 340
+ ++ + + + + + L+ + K + + E + Q F +
Sbjct: 40 NEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQD 99
Query: 341 -QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE-----------KDTLREQVQA 388
+ +S ++ +E+ + ++ +++ + R + +
Sbjct: 100 YRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKT 159
Query: 389 LSLQIEAMHTAIRKLEE 405
+++A H + KLE+
Sbjct: 160 ALAEVQARHQELLKLEK 176
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEAL 326
++ K+ + E K+ +L + +LQK+V +E L
Sbjct: 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei
structure initiative; 2.40A {Streptococcus pneumoniae}
SCOP: a.281.1.2
Length = 113
Score = 26.6 bits (59), Expect = 9.1
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 266 ASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEA 325
+ + G E++ K + AD EA + ++QK T + + +
Sbjct: 13 SRGLRGLPEYKAV-------KAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDAS 65
Query: 326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE 364
+ME G+ Q + LL + K +++
Sbjct: 66 FQAKMEGFGKQI-----QGNSLLSEFFTKQQQLAIYLSD 99
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 27.7 bits (62), Expect = 9.6
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 276 RKFACVVRDSKRDERKKLADE--EAMRKIKQL----EDQTHQLQKQVATHKQEEEALLNE 329
R FA VV D E +KLA+E +A ++++ K + E
Sbjct: 159 RGFA-VVAD----EIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKL 213
Query: 330 MEVTGQAFEDMQEQNSRLLQQLRE 353
+ + + R+ + L+
Sbjct: 214 ADEADEKLNSIVGAVERINEMLQN 237
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 27.5 bits (62), Expect = 9.9
Identities = 11/64 (17%), Positives = 33/64 (51%)
Query: 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL 447
AL +Q E + + +++ L + + ++ L +Q + L++ ++++ Q A++ L
Sbjct: 19 ALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPL 78
Query: 448 HLVI 451
++
Sbjct: 79 EDLL 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.390
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,453,786
Number of extensions: 436610
Number of successful extensions: 1909
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 244
Length of query: 517
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 419
Effective length of database: 3,965,535
Effective search space: 1661559165
Effective search space used: 1661559165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.2 bits)