RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10797
(517 letters)
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 39.0 bits (90), Expect = 0.001
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
K E A + + + + E + + + + + + L Q E +
Sbjct: 182 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY 241
Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
L+QL EK + + + + + KL +E++ L+E Q + M I+ L+
Sbjct: 242 QEHLKQLTEKMENDRVQLLKEQERTLALKL-QEQEQLLKEGFQK---ESRIMKNEIQDLQ 297
Query: 405 EK 406
K
Sbjct: 298 TK 299
Score = 33.6 bits (76), Expect = 0.045
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ---EQNS 345
+ K E RK Q E+ K + + + E + E
Sbjct: 158 QDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQ 217
Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEK-DTLREQVQALSLQIEAMHTAIRKLE 404
+ L E N ++M ++ +S Q H EK + R Q L E T KL+
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ-----LLKEQERTLALKLQ 272
Query: 405 EKERFLQTVLTNAEKELHLRNQAM 428
E+E+ L+ + + Q +
Sbjct: 273 EQEQLLKEGFQKESRIMKNEIQDL 296
Score = 32.0 bits (72), Expect = 0.13
Identities = 16/121 (13%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 275 FRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME--V 332
+ + K E +++ E A K L + + ++ + ++ + L ++ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 252
Query: 333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ 392
+ ++EQ L +L+E++ L + ++E ++ ++Q L +
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQ-------------LLKEGFQKESRIMKNEIQDLQTK 299
Query: 393 I 393
+
Sbjct: 300 M 300
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 35.6 bits (82), Expect = 0.006
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 316 VATHKQEE-EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL--- 371
V T KQ+ E L ++ Q EQ ++++ L++ D N+K + + L
Sbjct: 1 VVTEKQQMLEQHLQDVRKRVQ----DLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGN 56
Query: 372 -HKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430
+ R++ L + + AL ++ + + L ++Q LT+ E R Q +
Sbjct: 57 NQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIAC 116
Query: 431 N 431
Sbjct: 117 I 117
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 33.2 bits (76), Expect = 0.014
Identities = 17/110 (15%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 300 RKIKQLEDQTHQLQKQ---VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
+ ++ Q QLQ+Q ++ KQ E +NE + + ++ + +
Sbjct: 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR-AADDAEVYKSSG---- 55
Query: 357 ANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406
++ K +L E+ +TL+ + + + Q E + +++++
Sbjct: 56 ---NILIRVAKDELTEELQ-EKLETLQLREKTIERQEERVMKKLQEMQVN 101
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 34.6 bits (79), Expect = 0.020
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
R + + EA + Q++ Q + + E + + + +
Sbjct: 201 MRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQ--------GLAPQDRD 252
Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLA 375
+ QLR++ F E I++ L + A
Sbjct: 253 ARIAQLRQQ---TFTAPGEAIRAASLDRGA 279
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 33.7 bits (77), Expect = 0.027
Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372
QK++ + + + + +E ++ ED+Q++ + L+ + E +
Sbjct: 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR---------EHETNGVAK 54
Query: 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431
++E+ L++ L + + + I +L Q L N E R Q
Sbjct: 55 SDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACI 113
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 31.0 bits (70), Expect = 0.13
Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD-------ANFKLMT 363
++ Q+ ++ + E + +ME ++ E + L ++ KD +
Sbjct: 5 EIVAQLNIYQSQVELIQQQMEAVRATISEL-EILEKTLSDIQGKDGSETLVPVGAGSFIK 63
Query: 364 ERIKSNQ-----------LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
+K + K + ++++ Q L ++ M +R + + +
Sbjct: 64 AELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDI---MMK 120
Query: 413 VLTNAEK 419
+ AE+
Sbjct: 121 LSPQAEE 127
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 30.6 bits (69), Expect = 0.18
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 288 DERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347
R+ + EE +K++ E++ + ++ H E+ E+ + E+N+
Sbjct: 37 PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI------QKAIEENNNF 90
Query: 348 LQQLREKDDANFKLMTERIKSNQLHKLAR-EEKDTLREQVQ 387
++ +EK + E +++ L R +EKD E+V+
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 26.0 bits (57), Expect = 6.8
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQV--ATHKQEEEALLNEMEVTGQAFEDMQEQ 343
+ ++ + A+E + +L + ++ K EE F M ++
Sbjct: 46 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEEN---------NNFIKMAKE 96
Query: 344 NSRL-LQQLREKDDANFKLMTERIKSNQLH----KLAREEKD 380
++ +E +A+ M ER++ H + +E K+
Sbjct: 97 KLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 30.2 bits (68), Expect = 0.19
Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV----TGQAFEDMQEQNSRLLQQLREK 354
+ KI + ++ + + +E E+E + ++ + + Q + ++
Sbjct: 19 IDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 78
Query: 355 DDANFKLMTERIKSNQLHKLAREEKDTLRE 384
+ N RI+ Q L+R+ + + E
Sbjct: 79 EGLNRSSADLRIRKTQHSTLSRKFVEVMSE 108
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 29.8 bits (67), Expect = 0.29
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 362 MTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE- 420
M R QL++ + + R +L ++ E + T + K +E R ++ ++T A+ +
Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSL-VRHEIIKTTLPKAKELRRVVEPLITLAKTDS 59
Query: 421 LHLRNQAMDLNKRKAI 436
+ R A + I
Sbjct: 60 VANRRLAFARTRDNEI 75
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 31.0 bits (69), Expect = 0.44
Identities = 21/247 (8%), Positives = 58/247 (23%), Gaps = 13/247 (5%)
Query: 162 YHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSS 221
+ F I RF + F
Sbjct: 506 DKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGK 565
Query: 222 TIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACV 281
+I S + + + + ++ S I +E
Sbjct: 566 IKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQ-WEVEKYSFQVKFIKMIIEKEL---T 621
Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
V + R+ + + + + + + + E ++ +
Sbjct: 622 VTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDT 681
Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM-HTAI 400
E ++L + + ++ L +E L +Q Q ++E + +
Sbjct: 682 ENVINGPEELYGTYEY--------LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSA 733
Query: 401 RKLEEKE 407
+ + +
Sbjct: 734 KDIWNTD 740
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 28.9 bits (65), Expect = 0.45
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 282 VRDSKRDERKKLADEEAMRKI-----KQLEDQTHQLQKQVATHKQEEEA-----LLNEME 331
K + ADE A R QL Q Q+ + T ++ +A L+ + E
Sbjct: 20 FTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHE 79
Query: 332 VTGQAFEDMQEQNSRLLQQL 351
+ +++ S L+ +L
Sbjct: 80 KI-SQLMEAEQRMSMLIGEL 98
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein,
ArcB {Escherichia coli [TaxId: 562]}
Length = 118
Score = 28.8 bits (64), Expect = 0.56
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 330 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-------NQLHKLARE-EKDT 381
+ + M S L L +D +IK L +L ++ +
Sbjct: 25 TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPD 84
Query: 382 LREQVQALSLQIEAMHTAIRK-LEEKERFLQ 411
L + IE M R +E + ++
Sbjct: 85 LPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 115
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 28.1 bits (63), Expect = 1.1
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 11/80 (13%)
Query: 282 VRDSKRDERKKLADEEAMRKI-----KQLEDQTHQLQKQVATHK-----QEEEALLNEME 331
+ K + AD EA + Q E Q Q+ + +
Sbjct: 21 YKAVKAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGNS 80
Query: 332 VTGQAFEDMQEQNSRLLQQL 351
+ F Q+Q + L +
Sbjct: 81 LL-SEFFTKQQQLAIYLSDI 99
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 28.3 bits (63), Expect = 1.1
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 335 QAFEDMQEQNSRLLQQL----REKDDANFKLMTERIKS----NQLHKLAREE----KDTL 382
+ ++ + L ++L + + E + L KL+ + K+
Sbjct: 26 ENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIA 85
Query: 383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK-ELHLRNQAMD 429
+ + +R+ E R L+N E+ EL NQ +
Sbjct: 86 EQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELA 133
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 27.8 bits (62), Expect = 1.3
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQ------KQVATHK-----QEEEALLNEM 330
V KR E + +++ + Q++ Q K A + + L E+
Sbjct: 25 VDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEI 84
Query: 331 EVTGQAFEDMQEQNSRLLQQL 351
V Q F D Q + + LLQ +
Sbjct: 85 PVI-QEFRDSQMEVNDLLQLV 104
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 27.6 bits (61), Expect = 1.8
Identities = 8/71 (11%), Positives = 15/71 (21%), Gaps = 6/71 (8%)
Query: 121 FRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCF------SIFRFSSST 174
F +++ + H S + + S + T
Sbjct: 20 FPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILT 79
Query: 175 VFVYHCFSIFR 185
YH R
Sbjct: 80 ALAYHVVVGIR 90
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 28.0 bits (62), Expect = 2.1
Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 26/162 (16%)
Query: 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
+ +++Q+ Q QL+ Q+ T K E++ ++ + L
Sbjct: 5 KQGEQLEQMAQQLEQLKSQLETQKNMYESM------AK--TTNLGDLLGTSTNTLANNLP 56
Query: 357 ANFKLMTERIKSN-----QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411
N+K + ++ + + + + K +
Sbjct: 57 DNWKEVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRVMAE 116
Query: 412 TVLTNAEKEL----HLRNQ---------AMDLNKRKAIESAQ 440
N +EL L Q DL R
Sbjct: 117 KAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGA 158
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 27.2 bits (60), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRK 301
+ + + RD++ ERKK +A R
Sbjct: 94 KLKPLGFLTRDARVVERKKYGKHKARRA 121
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.1 bits (57), Expect = 3.0
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 487 DCLRTRYETRQRKCPKCNAKANDYHRLYL 515
CL + E+ + CP C + + +
Sbjct: 48 SCLTSWQESEGQGCPFCRCEIKGTEPIVV 76
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 381
Score = 28.1 bits (61), Expect = 3.1
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 1/102 (0%)
Query: 171 SSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFD 230
C S ++ C + S + S +
Sbjct: 41 GGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHT 100
Query: 231 IFSLTSTLFVS-ICTSAFQMSFYKSRWFDFRSLSDSASNIYG 271
F +T + + + SL ++ + G
Sbjct: 101 RFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAG 142
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 113
Score = 26.6 bits (59), Expect = 3.3
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTG------- 334
+ KR DE A R + D +L ++ + + +
Sbjct: 20 FQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE 79
Query: 335 --QAFEDMQEQNSRLLQQL 351
+++Q S + ++
Sbjct: 80 KLARLMALEQQMSITIAEV 98
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 27.7 bits (61), Expect = 4.0
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD 444
+ + +EA EK +F QT+ +K+ + ++ K ++ S D
Sbjct: 417 KLAKVDMEAFI------AEKLKFKQTLEQEWKKQA-IAKGRLNPESLKGVDEKSSYYD 467
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 27.1 bits (59), Expect = 5.6
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN 425
T + QA+ L +E + EK+ F++TV+ E++
Sbjct: 399 TKEKAQQAIGLNMEQIKA------EKQDFIKTVIPQWEEQARKNG 437
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 26.9 bits (58), Expect = 6.0
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 15/151 (9%)
Query: 281 VVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
++ +E+ + E +K+K + T + ++ + +E L E+T Q
Sbjct: 4 RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVL----ELTSQILG-A 58
Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
+ L RE + + + L + E L ++ H
Sbjct: 59 NPDFATLWNCRRE----VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 114
Query: 401 RKLEEKERFLQTVLTNAEKELHLRNQAMDLN 431
L N +EL L + ++ +
Sbjct: 115 WLLSRLPEP------NWARELELCARFLEAD 139
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 395
Score = 26.9 bits (58), Expect = 6.1
Identities = 22/217 (10%), Positives = 63/217 (29%), Gaps = 3/217 (1%)
Query: 210 YHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNI 269
+ +T+ + L + ++ + +R + +
Sbjct: 114 LLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVM 173
Query: 270 YGSLEFRKFACVVRD--SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALL 327
+ + + ++L D + ++ Q + + + +
Sbjct: 174 PMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEP 233
Query: 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQ 387
+ + Q + + +++ + K + I + ++ + A E V
Sbjct: 234 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVL 293
Query: 388 ALSLQIEAMHTAIRK-LEEKERFLQTVLTNAEKELHL 423
L+ E++ A + L E R L LT + L
Sbjct: 294 DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSL 330
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 25.3 bits (55), Expect = 6.8
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 487 DCLRTRYETRQRKCPKCNA 505
C+ + CP C
Sbjct: 48 ICILRCLKVMGSYCPSCRY 66
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 26.0 bits (57), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 274 EFRKFACVVRDSKRDERKK 292
E RK V RD+++ ERKK
Sbjct: 93 ELRKAGFVTRDARQVERKK 111
>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE)
{Yersinia pestis [TaxId: 632]}
Length = 197
Score = 26.4 bits (58), Expect = 7.7
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 22/109 (20%)
Query: 282 VRDSKRDER-----KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
R S +E+ K+ + E + + +L L + +A L
Sbjct: 6 ARVSDVEEQVNQYLSKVPELEQKQNVSELLS---LLSNSPNISLSQLKAYLE------GK 56
Query: 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385
E+ EQ ++L LR+ + L L + ++ E+
Sbjct: 57 SEEPSEQ-FKMLCGLRDALKGR-------PELAHLSHLVEQALVSMAEE 97
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 25.9 bits (57), Expect = 8.7
Identities = 8/72 (11%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 288 DERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM-----EVTGQAFEDMQE 342
+E + +E +L ++ ++ ++ E +A+L + +++
Sbjct: 66 EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 125
Query: 343 QNSRLLQQLREK 354
+ R L+++
Sbjct: 126 RLLRDADDLQKR 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.134 0.390
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,831,746
Number of extensions: 86084
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 55
Length of query: 517
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,185,626
Effective search space: 507447928
Effective search space used: 507447928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)