BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10800
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/80 (88%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Query: 1 MKKIEQAGT-LDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ 59
MKK+E +GT +DEVM+EEIREYKETLTCPSCKVKRKDAVL+KCFHVFC+DCLRTRYETRQ
Sbjct: 964 MKKMEMSGTTIDEVMIEEIREYKETLTCPSCKVKRKDAVLSKCFHVFCYDCLRTRYETRQ 1023
Query: 60 RKCPKCNAAFGANDYHRLYL 79
RKCPKCN AFGANDYHRLYL
Sbjct: 1024 RKCPKCNCAFGANDYHRLYL 1043
>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1
Length = 975
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 66/70 (94%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE+++EEI++YK LTCP C +++KDAVLTKCFHVFC++C++TRY+TRQRKCPKCNAAFG
Sbjct: 906 DEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFG 965
Query: 71 ANDYHRLYLG 80
AND+HR+Y+G
Sbjct: 966 ANDFHRIYIG 975
>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1
SV=2
Length = 975
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 66/70 (94%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE+++EEI++YK LTCP C +++KDAVLTKCFHVFC++C++TRY+TRQRKCPKCNAAFG
Sbjct: 906 DEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFG 965
Query: 71 ANDYHRLYLG 80
AND+HR+Y+G
Sbjct: 966 ANDFHRIYIG 975
>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2
SV=1
Length = 984
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 66/70 (94%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE+++EEI++YK LTCP C +++KDAVLTKCFHVFC++C++TRY+TRQRKCPKCNAAFG
Sbjct: 915 DEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFG 974
Query: 71 ANDYHRLYLG 80
AND+HR+Y+G
Sbjct: 975 ANDFHRIYIG 984
>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1
SV=2
Length = 973
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 66/70 (94%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE+++EEI++YK LTCP C +++KDAVLTKCFHVFC++C++TRY+TRQRKCPKCNAAFG
Sbjct: 904 DEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFG 963
Query: 71 ANDYHRLYLG 80
AND+HR+Y+G
Sbjct: 964 ANDFHRIYIG 973
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4
Length = 1001
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K+E DE++ EEI+EYK LTCP C ++KDAVLTKCFHVFC++C+R RYE RQRK
Sbjct: 923 RKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRK 982
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCNAAFGA+D+HR+Y+
Sbjct: 983 CPKCNAAFGAHDFHRIYI 1000
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K+E DE++ EEI+EYK LTCP C ++KDAVLTKCFHVFC++C+R RYE RQRK
Sbjct: 923 RKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRK 982
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCNAAFGA+D+HR+Y+
Sbjct: 983 CPKCNAAFGAHDFHRIYI 1000
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1
Length = 1001
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K+E DE++ EEI+EYK LTCP C ++KDAVLTKCFHVFC++C+R RYE RQRK
Sbjct: 923 RKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRK 982
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCNAAFGA+D+HR+Y+
Sbjct: 983 CPKCNAAFGAHDFHRIYI 1000
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1
SV=1
Length = 1002
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K+E DE++ EEI+EYK LTCP C ++KDAVLTKCFHVFC++C+R RYE RQRK
Sbjct: 924 RKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRK 983
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCNAAFGA+D+HR+Y+
Sbjct: 984 CPKCNAAFGAHDFHRVYI 1001
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2
Length = 1001
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K+E DE++ EEI+EYK LTCP C ++KDAVLTKCFHVFC++C+R RYE RQRK
Sbjct: 923 RKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRK 982
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCNAAFGA+D+HR+Y+
Sbjct: 983 CPKCNAAFGAHDFHRVYI 1000
>sp|Q60YN5|BRE1_CAEBR E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditis briggsae
GN=rfp-1 PE=3 SV=1
Length = 828
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 62/78 (79%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
K+ + A T D+V+ E R+ KETLTCPSCK + KD ++ KC+H+FC C++T Y+TRQRK
Sbjct: 751 KRNDSAQTGDQVLQEANRQMKETLTCPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRK 810
Query: 62 CPKCNAAFGANDYHRLYL 79
CPKCN+ FGAND+HR+++
Sbjct: 811 CPKCNSNFGANDFHRIFI 828
>sp|P34537|BRE1_CAEEL E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditis elegans
GN=rfp-1 PE=1 SV=2
Length = 837
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 59/73 (80%)
Query: 7 AGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 66
A + D+V+ E R+ KETLTCPSCK + KD ++ KC+H+FC C++T Y+TRQRKCPKCN
Sbjct: 765 AQSGDQVLEEANRQMKETLTCPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRKCPKCN 824
Query: 67 AAFGANDYHRLYL 79
+ FGAND+HR+++
Sbjct: 825 SNFGANDFHRIFI 837
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 52/79 (65%)
Query: 1 MKKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR 60
++ + + + + + +E+ E+KE L C +C + K+ V+TKC+H+FC C++ TRQ+
Sbjct: 800 LRSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQK 859
Query: 61 KCPKCNAAFGANDYHRLYL 79
KCP C+A+FG ND +Y+
Sbjct: 860 KCPTCSASFGPNDIKPIYI 878
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
indica GN=BRE1A PE=3 SV=2
Length = 884
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 12 EVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71
E + E++EY+ L C C ++K+ V+TKC+H+FC C++ RQR+CP C+ +FGA
Sbjct: 817 EKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGA 876
Query: 72 NDYHRLYL 79
ND +Y+
Sbjct: 877 NDVKPIYI 884
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
japonica GN=BRE1A PE=2 SV=3
Length = 884
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 12 EVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71
E + E++EY+ L C C ++K+ V+TKC+H+FC C++ RQR+CP C+ +FGA
Sbjct: 817 EKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGA 876
Query: 72 NDYHRLYL 79
ND +Y+
Sbjct: 877 NDVKPIYI 884
>sp|Q86KL1|BRE1_DICDI Probable E3 ubiquitin-protein ligase bre1 OS=Dictyostelium discoideum
GN=bre1 PE=3 SV=1
Length = 1080
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75
EE++ + L C C ++K+ V+ KCFHVFC +C+ + +TR+R+CP CN AF D H
Sbjct: 1017 EELKLINQRLRCTICNDRQKNYVIAKCFHVFCKECIYSNIDTRKRRCPSCNRAFAETDVH 1076
Query: 76 RLY 78
++Y
Sbjct: 1077 QIY 1079
>sp|Q4P3X7|BRE1_USTMA E3 ubiquitin-protein ligase BRE1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=BRE1 PE=3 SV=1
Length = 817
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79
L C SCK + ++ +LTKC+H FC +C+ +R +TRQRKCP C AF +D LYL
Sbjct: 762 LQCSSCKERYRNRILTKCYHTFCSECIDSRVQTRQRKCPHCALAFAVSDVQPLYL 816
>sp|Q07457|BRE1_YEAST E3 ubiquitin-protein ligase BRE1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRE1 PE=1 SV=1
Length = 700
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 5 EQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPK 64
+ G+ DE ++EE+ ++ + C C K+ + C HVFC +C + R R RKCP
Sbjct: 626 KNKGSSDEALVEELANFRTLVYCSLCSKNWKNMAIKTCGHVFCENCCKERLAARMRKCPT 685
Query: 65 CNAAFGANDYHRLYL 79
CN AF +ND ++L
Sbjct: 686 CNKAFSSNDLLTVHL 700
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+EI+E K L C C + K+ V+TKCFH+FC C++ E R RKCP C FG +D
Sbjct: 781 DEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSD 838
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+EI+E K L C C + K+ V+TKCFH+FC C++ E R RKCP C FG +D
Sbjct: 781 DEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSD 838
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
EE++ K L C C + K+ V+ KC+H+FC C++ E R RKCP C AFG ND
Sbjct: 837 EEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQND 894
>sp|O74563|BRL2_SCHPO E3 ubiquitin-protein ligase brl2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl2 PE=1 SV=1
Length = 680
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 16 EEIREYKETLTCPSCKVKR-KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74
EE++ ++ C C +R KD +++ C H FC+ C++ R ETRQR+CP C FGA+D
Sbjct: 616 EELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDV 675
Query: 75 HRLYL 79
++L
Sbjct: 676 IPIHL 680
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79
C C+ K+ + C HVFC DC+ R +R RKCP CN +FG NDY + L
Sbjct: 708 CTVCRRNFKNTAIKTCGHVFCKDCVEERLTSRSRKCPNCNRSFGNNDYMHITL 760
>sp|Q6FWF3|BRE1_CANGA E3 ubiquitin-protein ligase BRE1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=BRE1 PE=3 SV=1
Length = 693
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
++ M EE+ ++ + C C K+ + C HVFC DC + R R RKCP CN F
Sbjct: 625 EDSMAEELENFRTLVYCSLCSKNWKNMAIRTCGHVFCEDCCKERLAARMRKCPTCNKPFS 684
Query: 71 ANDYHRLYL 79
+ND ++L
Sbjct: 685 SNDLLMVHL 693
>sp|Q757D9|BRE1_ASHGO E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE1
PE=3 SV=1
Length = 643
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 8 GTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
G + + EE+ ++ + C C KD V+ C HVFC DC + R R RKCP CN
Sbjct: 572 GGDNGALAEELENFRTVVYCSLCSKNWKDTVIKTCGHVFCADCCKERLAARMRKCPTCNK 631
Query: 68 AFGANDYHRLYL 79
F +ND ++L
Sbjct: 632 GFSSNDLLVVHL 643
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
D +++EE E + L C C ++ ++ KC H++C +C+ +TR RKCP+C F
Sbjct: 1034 DHLLIEENNELRRRLICSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKCPQCKVPFD 1093
Query: 71 ANDYHRLYL 79
D +++L
Sbjct: 1094 KKDLQKIFL 1102
>sp|Q6BWW6|BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BRE1 PE=3 SV=2
Length = 691
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE LE +R + C C KD +T C HVFC C + R R R+CP CN F
Sbjct: 626 DERQLEALRSIAK---CSVCSKNWKDTAITVCGHVFCSGCTQERLAARLRRCPTCNKGFS 682
Query: 71 ANDYHRLYL 79
AND ++L
Sbjct: 683 ANDLLSIHL 691
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
DE LE +R + C C KD +T C HVFC C + R R R+CP CN F
Sbjct: 616 DEQQLEALRSIAK---CSVCSKNWKDTAITVCGHVFCSKCTQERLAARLRRCPSCNRGFS 672
Query: 71 ANDYHRLYL 79
AND ++L
Sbjct: 673 ANDLLSIHL 681
>sp|P0CQ62|BRE1_CRYNJ E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BRE1 PE=3 SV=1
Length = 820
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 78
L C C+ K V+ KC H FC CL R +RQRKCP C AF D LY
Sbjct: 765 LKCSCCEQNFKQQVIVKCMHTFCKQCLEQRIASRQRKCPACGLAFAKEDIQTLY 818
>sp|P0CQ63|BRE1_CRYNB E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BRE1 PE=3 SV=1
Length = 820
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 78
L C C+ K V+ KC H FC CL R +RQRKCP C AF D LY
Sbjct: 765 LKCSCCEQNFKQQVIVKCMHTFCKQCLEQRIASRQRKCPACGLAFAKEDIQTLY 818
>sp|Q6CWM4|BRE1_KLULA E3 ubiquitin-protein ligase BRE1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=BRE1 PE=3 SV=1
Length = 663
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
K + G + + EE+ ++ + C C K+ L C HVFC C + R R RK
Sbjct: 586 KTLLSNGGDNGALAEELENFRTIIYCSLCSKNWKNTALKTCGHVFCDVCCKERLAARMRK 645
Query: 62 CPKCNAAFGANDYHRLYL 79
CP CN F +ND ++L
Sbjct: 646 CPTCNKPFSSNDLLSIHL 663
>sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bre1
PE=3 SV=2
Length = 725
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79
C C+ K+ + C HVFC +C+ R +R RKCP CN +FG ND+ + L
Sbjct: 673 CTVCRRNFKNTAIKTCGHVFCKECVEERLTSRSRKCPNCNRSFGNNDHMHITL 725
>sp|Q6CF78|BRE1_YARLI E3 ubiquitin-protein ligase BRE1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=BRE1 PE=3 SV=1
Length = 700
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75
+EI E + C C KD L C HVFC C + R + R RKCP CN F ND
Sbjct: 637 DEIDELRSIAMCSLCSKNWKDTALKVCGHVFCHQCAQDRLDARLRKCPNCNKPFSQNDLL 696
Query: 76 RLYL 79
++L
Sbjct: 697 TVHL 700
>sp|Q7S304|BRE1_NEUCR E3 ubiquitin-protein ligase bre-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bre-1 PE=3 SV=1
Length = 707
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79
C C+ K+ +L C HVFC +C+ R R RKCP CN AF +D +L
Sbjct: 655 CSVCRSNFKNTILKGCGHVFCNECVDNRLANRMRKCPSCNKAFDRSDAMPAHL 707
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 19 REYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRY-ETRQRKCPKCNAAFGANDYHR 76
+E K L CP C KDA +++C H FC C+R ++ R CP CN G +
Sbjct: 8 KEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEK 67
Query: 77 L 77
L
Sbjct: 68 L 68
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 37 STFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKCNA 67
+ + ++ LTCP C + K L C H FC+ CL + +T R KCP+C A
Sbjct: 34 LEKIEQLLTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRA 85
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185
PE=2 SV=1
Length = 194
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
T C C KDAV++ C H+FCW CL ETR + CP C A + LY
Sbjct: 37 NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 16 EEIREYKETLTCPSCKVKR-KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74
+E + YK L C C K ++ C H FC +C+ YE + CP+C F +D
Sbjct: 628 QEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDI 687
Query: 75 HRLYL 79
++L
Sbjct: 688 LTIHL 692
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 14 MLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 66
+L + CP C ++A +TKC H FC+ C+ E R CPKCN
Sbjct: 125 LLNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNR-CPKCN 176
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 66
CP C ++A +TKC H FC+ C+ E R CPKCN
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNR-CPKCN 174
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1
SV=1
Length = 235
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK--CPKCNAAFGANDYHRLY 78
C C KDAV++ C H+FCW CL +TR CP C +A N +Y
Sbjct: 26 CNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIY 79
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 12 EVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
+ +LE ++ K+TL CP C + T C H +C++CL + + CP C
Sbjct: 70 KTLLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECL-LNWLKESKSCPTC 122
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
C C+ K+ L C H+FC C+ R R RKCP C+ AF D
Sbjct: 651 CTICRNNFKNTALKTCGHLFCNQCVDDRISNRMRKCPTCSRAFDKMD 697
>sp|Q6ZRF8|RN207_HUMAN RING finger protein 207 OS=Homo sapiens GN=RNF207 PE=2 SV=2
Length = 634
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
L CP C V+ + L CFH FC CLR R + CP C
Sbjct: 23 LVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLC 63
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR---KCPKCNAAFGAND 73
E +CP C A +T+C H+FCW C+ +R KCP C ++ D
Sbjct: 221 EVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKD 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,274,898
Number of Sequences: 539616
Number of extensions: 856669
Number of successful extensions: 4489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 4120
Number of HSP's gapped (non-prelim): 607
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)