Query psy10800
Match_columns 81
No_of_seqs 163 out of 1256
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lrq_A E3 ubiquitin-protein li 99.8 1.8E-19 6.2E-24 97.6 3.5 65 14-78 12-77 (100)
2 1g25_A CDK-activating kinase a 99.8 8.6E-19 2.9E-23 88.2 5.0 59 23-81 2-65 (65)
3 1t1h_A Gspef-atpub14, armadill 99.8 8.9E-19 3E-23 90.9 4.6 57 20-76 4-60 (78)
4 3ng2_A RNF4, snurf, ring finge 99.7 4.3E-19 1.5E-23 90.4 2.4 59 20-79 6-71 (71)
5 2ecy_A TNF receptor-associated 99.7 1.5E-18 5.1E-23 87.5 3.8 55 20-74 11-65 (66)
6 2xeu_A Ring finger protein 4; 99.7 1.5E-18 5.2E-23 86.7 3.2 56 23-79 2-64 (64)
7 1jm7_A BRCA1, breast cancer ty 99.7 3.1E-18 1E-22 94.0 4.2 70 8-77 5-76 (112)
8 2ysl_A Tripartite motif-contai 99.7 4.1E-18 1.4E-22 87.2 4.0 56 19-74 15-72 (73)
9 3fl2_A E3 ubiquitin-protein li 99.7 3.3E-18 1.1E-22 95.7 3.8 54 18-71 46-99 (124)
10 2ecw_A Tripartite motif-contai 99.7 1.5E-17 5.3E-22 87.0 5.3 60 19-78 14-78 (85)
11 2djb_A Polycomb group ring fin 99.7 6.3E-18 2.1E-22 86.6 3.7 58 19-77 10-68 (72)
12 3ztg_A E3 ubiquitin-protein li 99.7 1.4E-17 4.7E-22 88.7 4.5 56 20-75 9-67 (92)
13 4ayc_A E3 ubiquitin-protein li 99.7 7.1E-18 2.4E-22 95.9 3.5 52 19-71 48-99 (138)
14 2ct2_A Tripartite motif protei 99.7 1.3E-17 4.6E-22 87.9 4.1 59 19-77 10-74 (88)
15 2egp_A Tripartite motif-contai 99.7 1.3E-18 4.5E-23 90.3 0.1 58 19-76 7-70 (79)
16 2yur_A Retinoblastoma-binding 99.7 1.2E-17 4E-22 86.0 3.6 55 19-73 10-66 (74)
17 2ecv_A Tripartite motif-contai 99.7 2.5E-17 8.7E-22 86.2 3.7 59 19-77 14-77 (85)
18 2d8t_A Dactylidin, ring finger 99.7 1.3E-17 4.4E-22 85.2 1.4 56 21-77 12-67 (71)
19 2ysj_A Tripartite motif-contai 99.7 7.6E-17 2.6E-21 80.5 4.1 47 19-65 15-63 (63)
20 2kr4_A Ubiquitin conjugation f 99.7 6.3E-17 2.1E-21 85.4 3.9 57 20-77 10-66 (85)
21 1z6u_A NP95-like ring finger p 99.7 3.5E-17 1.2E-21 94.3 3.0 52 21-72 75-126 (150)
22 2y43_A E3 ubiquitin-protein li 99.7 3.4E-17 1.2E-21 88.3 2.7 58 18-76 16-74 (99)
23 2csy_A Zinc finger protein 183 99.7 9.7E-17 3.3E-21 83.7 4.2 50 20-70 11-60 (81)
24 3hct_A TNF receptor-associated 99.7 5.2E-17 1.8E-21 90.1 3.3 57 19-75 13-69 (118)
25 1rmd_A RAG1; V(D)J recombinati 99.7 4E-17 1.4E-21 90.2 2.6 54 22-75 21-74 (116)
26 2kre_A Ubiquitin conjugation f 99.6 1.1E-16 3.6E-21 86.9 4.0 58 19-77 24-81 (100)
27 1jm7_B BARD1, BRCA1-associated 99.6 1.6E-17 5.6E-22 92.1 0.7 62 12-76 10-72 (117)
28 4ap4_A E3 ubiquitin ligase RNF 99.6 9.2E-17 3.1E-21 90.0 3.6 58 22-80 5-69 (133)
29 2ckl_A Polycomb group ring fin 99.6 1.4E-16 4.9E-21 87.1 4.0 54 18-72 9-63 (108)
30 1wgm_A Ubiquitin conjugation f 99.6 2.4E-16 8.3E-21 85.1 4.5 58 19-77 17-75 (98)
31 2ea6_A Ring finger protein 4; 99.6 1.7E-16 5.7E-21 80.2 3.2 51 20-71 11-68 (69)
32 2ecj_A Tripartite motif-contai 99.6 2.7E-16 9.3E-21 77.1 3.4 47 19-65 10-58 (58)
33 2ckl_B Ubiquitin ligase protei 99.6 3.7E-17 1.3E-21 95.2 0.1 53 19-71 49-102 (165)
34 2ecn_A Ring finger protein 141 99.6 5.3E-17 1.8E-21 82.5 0.7 59 19-79 10-68 (70)
35 4ic3_A E3 ubiquitin-protein li 99.6 5.4E-17 1.8E-21 83.6 0.6 58 15-79 15-73 (74)
36 1e4u_A Transcriptional repress 99.6 5E-16 1.7E-20 80.8 4.2 57 20-76 7-67 (78)
37 3l11_A E3 ubiquitin-protein li 99.6 6.1E-17 2.1E-21 89.4 -0.5 49 22-70 13-61 (115)
38 2ect_A Ring finger protein 126 99.6 5.7E-16 2E-20 80.2 2.9 56 20-76 11-69 (78)
39 3knv_A TNF receptor-associated 99.6 2.2E-16 7.6E-21 90.2 1.3 52 19-70 26-77 (141)
40 4ap4_A E3 ubiquitin ligase RNF 99.6 5.2E-16 1.8E-20 86.9 2.3 57 22-79 70-133 (133)
41 2c2l_A CHIP, carboxy terminus 99.6 9.9E-16 3.4E-20 94.6 3.7 55 22-76 206-260 (281)
42 3hcs_A TNF receptor-associated 99.6 1.1E-15 3.6E-20 89.3 3.6 57 19-75 13-69 (170)
43 1iym_A EL5; ring-H2 finger, ub 99.6 1.1E-15 3.6E-20 74.3 3.1 49 21-70 2-54 (55)
44 2ecm_A Ring finger and CHY zin 99.6 1.6E-15 5.6E-20 73.6 3.6 47 23-70 4-54 (55)
45 2yu4_A E3 SUMO-protein ligase 99.6 1.5E-15 5.1E-20 81.4 3.7 56 21-76 4-68 (94)
46 2f42_A STIP1 homology and U-bo 99.6 2.5E-15 8.6E-20 88.7 4.1 57 21-77 103-159 (179)
47 1chc_A Equine herpes virus-1 r 99.5 2.2E-15 7.7E-20 76.0 2.8 48 22-70 3-51 (68)
48 2ecg_A Baculoviral IAP repeat- 99.5 9.4E-16 3.2E-20 79.0 1.4 58 15-79 16-74 (75)
49 2l0b_A E3 ubiquitin-protein li 99.5 3.2E-15 1.1E-19 79.6 3.0 49 22-71 38-89 (91)
50 2kiz_A E3 ubiquitin-protein li 99.5 5.8E-15 2E-19 74.7 3.9 50 21-71 11-63 (69)
51 1x4j_A Ring finger protein 38; 99.5 1.7E-15 5.8E-20 77.9 1.6 51 21-72 20-73 (75)
52 2yho_A E3 ubiquitin-protein li 99.5 1E-15 3.4E-20 79.8 0.5 61 13-80 7-68 (79)
53 1bor_A Transcription factor PM 99.5 1.2E-15 4.2E-20 74.6 0.4 47 22-72 4-50 (56)
54 2ep4_A Ring finger protein 24; 99.5 9.4E-15 3.2E-19 74.8 3.4 51 20-71 11-64 (74)
55 2y1n_A E3 ubiquitin-protein li 99.5 2E-14 6.7E-19 93.1 5.4 56 19-74 327-382 (389)
56 1v87_A Deltex protein 2; ring- 99.5 1.2E-14 4E-19 80.0 3.5 48 24-71 25-94 (114)
57 2vje_A E3 ubiquitin-protein li 99.5 1.6E-14 5.5E-19 72.4 3.6 54 23-79 7-63 (64)
58 2ecl_A Ring-box protein 2; RNF 99.5 3.7E-14 1.3E-18 74.0 3.2 50 23-73 14-78 (81)
59 2vje_B MDM4 protein; proto-onc 99.4 4.4E-14 1.5E-18 70.6 3.1 54 23-79 6-62 (63)
60 3htk_C E3 SUMO-protein ligase 99.4 1.2E-13 4.2E-18 85.3 2.6 58 19-76 176-237 (267)
61 3dpl_R Ring-box protein 1; ubi 99.4 5.5E-13 1.9E-17 72.8 3.6 47 23-70 36-100 (106)
62 2ea5_A Cell growth regulator w 99.3 5.7E-13 2E-17 67.5 3.3 52 22-80 13-65 (68)
63 2bay_A PRE-mRNA splicing facto 99.3 8.2E-13 2.8E-17 65.6 3.2 55 24-79 3-58 (61)
64 3t6p_A Baculoviral IAP repeat- 99.3 2.1E-13 7E-18 87.4 0.8 60 13-79 284-344 (345)
65 1wim_A KIAA0161 protein; ring 99.2 9.7E-13 3.3E-17 70.2 -0.1 54 22-75 3-70 (94)
66 2d8s_A Cellular modulator of i 99.1 2.9E-11 9.9E-16 62.9 3.3 50 23-72 14-71 (80)
67 4a0k_B E3 ubiquitin-protein li 99.1 5.4E-12 1.9E-16 69.9 0.2 47 24-71 48-112 (117)
68 2ct0_A Non-SMC element 1 homol 99.0 1.3E-09 4.6E-14 55.8 4.8 49 23-71 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.9 2.2E-09 7.5E-14 57.5 3.5 46 26-71 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.7E-08 1.3E-12 48.5 3.7 50 22-71 4-59 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 98.5 7.1E-09 2.4E-13 66.5 -0.7 50 22-71 306-373 (381)
72 3nw0_A Non-structural maintena 97.8 2.8E-05 9.6E-10 47.6 4.1 50 23-72 179-230 (238)
73 3m62_A Ubiquitin conjugation f 97.8 1.4E-05 4.9E-10 56.8 3.0 59 18-77 885-944 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 97.6 2.8E-05 9.5E-10 41.4 2.0 33 23-55 2-37 (101)
75 2cs3_A Protein C14ORF4, MY039 95.8 0.009 3.1E-07 30.7 3.0 36 22-57 13-52 (93)
76 3i2d_A E3 SUMO-protein ligase 95.0 0.039 1.3E-06 35.8 4.5 53 22-74 247-303 (371)
77 4fo9_A E3 SUMO-protein ligase 94.9 0.044 1.5E-06 35.5 4.5 52 23-74 214-269 (360)
78 2ko5_A Ring finger protein Z; 93.4 0.036 1.2E-06 29.3 1.6 46 24-72 28-74 (99)
79 1z60_A TFIIH basal transcripti 92.1 0.13 4.5E-06 24.8 2.4 40 25-65 16-58 (59)
80 3mjh_B Early endosome antigen 90.6 0.022 7.5E-07 24.5 -1.1 16 22-37 3-18 (34)
81 1weo_A Cellulose synthase, cat 90.3 0.67 2.3E-05 24.2 4.2 47 24-70 16-69 (93)
82 2lri_C Autoimmune regulator; Z 88.9 0.34 1.2E-05 23.7 2.3 46 22-69 10-60 (66)
83 1m3v_A FLIN4, fusion of the LI 88.2 0.27 9.3E-06 26.6 1.9 49 24-73 32-83 (122)
84 1vfy_A Phosphatidylinositol-3- 87.8 0.17 5.7E-06 25.2 0.8 30 23-52 10-43 (73)
85 2rgt_A Fusion of LIM/homeobox 86.9 1.4 4.8E-05 25.0 4.5 48 23-73 32-79 (169)
86 2xqn_T Testin, TESS; metal-bin 86.8 0.82 2.8E-05 24.5 3.3 46 24-72 30-76 (126)
87 1wil_A KIAA1045 protein; ring 86.5 0.75 2.6E-05 23.8 2.8 33 21-54 12-47 (89)
88 2yw8_A RUN and FYVE domain-con 84.7 0.25 8.4E-06 25.1 0.5 31 23-53 18-52 (82)
89 2lbm_A Transcriptional regulat 84.4 1.1 3.8E-05 25.2 3.1 44 24-67 63-116 (142)
90 1joc_A EEA1, early endosomal a 84.3 0.21 7.2E-06 27.5 0.1 28 25-52 70-101 (125)
91 1z2q_A LM5-1; membrane protein 84.1 0.26 9.1E-06 25.1 0.5 31 23-53 20-54 (84)
92 2k16_A Transcription initiatio 83.2 0.16 5.4E-06 25.3 -0.6 49 23-71 17-71 (75)
93 1f62_A Transcription factor WS 83.0 0.5 1.7E-05 21.5 1.1 42 26-67 2-49 (51)
94 1x4u_A Zinc finger, FYVE domai 82.9 0.29 1E-05 24.9 0.3 29 24-52 14-46 (84)
95 2jtn_A LIM domain-binding prot 81.6 1 3.5E-05 25.9 2.3 46 24-72 87-132 (182)
96 1wfk_A Zinc finger, FYVE domai 81.2 0.3 1E-05 25.2 -0.0 30 23-52 8-41 (88)
97 3t7l_A Zinc finger FYVE domain 80.0 0.36 1.2E-05 25.0 0.1 30 24-53 20-53 (90)
98 3mpx_A FYVE, rhogef and PH dom 79.5 0.37 1.3E-05 31.2 0.0 46 24-69 375-430 (434)
99 2xjy_A Rhombotin-2; oncoprotei 79.2 2.1 7.2E-05 23.0 3.0 48 23-71 28-78 (131)
100 2cup_A Skeletal muscle LIM-pro 79.1 0.93 3.2E-05 23.3 1.5 46 24-72 33-79 (101)
101 2l5u_A Chromodomain-helicase-D 78.9 0.87 3E-05 21.7 1.2 44 22-67 9-57 (61)
102 1dvp_A HRS, hepatocyte growth 78.8 0.44 1.5E-05 28.4 0.2 30 23-52 160-193 (220)
103 3ql9_A Transcriptional regulat 76.9 2.6 8.8E-05 23.4 2.9 44 24-67 57-110 (129)
104 1y02_A CARP2, FYVE-ring finger 76.4 0.53 1.8E-05 25.8 0.0 41 24-65 19-63 (120)
105 3zyq_A Hepatocyte growth facto 76.2 0.72 2.4E-05 27.7 0.6 30 23-52 163-196 (226)
106 1wep_A PHF8; structural genomi 76.1 5.3 0.00018 19.8 3.8 47 23-70 11-65 (79)
107 2o35_A Hypothetical protein DU 76.1 1 3.5E-05 23.9 1.1 12 46-57 43-54 (105)
108 3fyb_A Protein of unknown func 76.0 1 3.6E-05 23.9 1.1 12 46-57 42-53 (104)
109 2fiy_A Protein FDHE homolog; F 75.6 0.23 7.9E-06 31.5 -1.8 46 22-68 180-231 (309)
110 3v43_A Histone acetyltransfera 74.4 4.9 0.00017 21.3 3.6 45 22-66 3-62 (112)
111 1rut_X Flinc4, fusion protein 74.1 0.88 3E-05 26.3 0.6 47 24-71 32-81 (188)
112 1b8t_A Protein (CRP1); LIM dom 71.2 3.5 0.00012 23.8 2.7 35 23-57 33-68 (192)
113 2gmg_A Hypothetical protein PF 70.9 1.4 4.7E-05 23.7 0.8 31 35-71 66-96 (105)
114 1wyh_A SLIM 2, skeletal muscle 70.6 3.3 0.00011 19.7 2.2 11 25-35 6-16 (72)
115 2dar_A PDZ and LIM domain prot 68.8 1.7 5.8E-05 21.9 0.9 39 24-71 25-63 (90)
116 1nyp_A Pinch protein; LIM doma 68.5 2.5 8.6E-05 19.8 1.4 37 25-70 6-42 (66)
117 2d8v_A Zinc finger FYVE domain 68.2 1.9 6.4E-05 21.2 0.9 33 22-55 6-39 (67)
118 2jr6_A UPF0434 protein NMA0874 68.1 0.83 2.8E-05 22.5 -0.4 43 21-80 5-47 (68)
119 2d8z_A Four and A half LIM dom 68.0 2.9 9.9E-05 19.8 1.6 31 25-55 32-63 (70)
120 1wd2_A Ariadne-1 protein homol 67.8 1.9 6.5E-05 20.6 0.9 13 59-71 6-18 (60)
121 2kw0_A CCMH protein; oxidoredu 67.4 2.7 9.4E-05 21.8 1.5 23 10-32 9-31 (90)
122 2cur_A Skeletal muscle LIM-pro 67.3 5.9 0.0002 18.6 2.7 33 24-56 31-64 (69)
123 2pv0_B DNA (cytosine-5)-methyl 67.3 6.2 0.00021 25.8 3.4 45 24-68 93-148 (386)
124 1x61_A Thyroid receptor intera 67.0 8.4 0.00029 18.2 3.3 32 25-56 34-66 (72)
125 1wig_A KIAA1808 protein; LIM d 66.9 4 0.00014 19.7 2.0 21 26-46 7-27 (73)
126 2cor_A Pinch protein; LIM doma 66.7 3.6 0.00012 20.2 1.9 40 24-72 15-54 (79)
127 2d8x_A Protein pinch; LIM doma 66.5 3.9 0.00013 19.3 1.9 32 25-56 32-64 (70)
128 1x64_A Alpha-actinin-2 associa 66.1 4.6 0.00016 20.2 2.2 41 23-72 24-64 (89)
129 1v6g_A Actin binding LIM prote 65.1 2.9 0.0001 20.5 1.3 39 25-72 16-54 (81)
130 2jny_A Uncharacterized BCR; st 64.4 1.1 3.8E-05 22.0 -0.4 43 20-79 6-48 (67)
131 1x63_A Skeletal muscle LIM-pro 64.4 5.6 0.00019 19.4 2.3 38 25-71 16-55 (82)
132 2l43_A N-teminal domain from h 64.4 0.76 2.6E-05 23.7 -1.0 55 20-74 21-81 (88)
133 3lqh_A Histone-lysine N-methyl 64.3 1 3.5E-05 26.4 -0.6 47 24-70 2-65 (183)
134 2yt5_A Metal-response element- 62.7 0.27 9.4E-06 23.7 -2.8 48 22-69 4-62 (66)
135 1x4l_A Skeletal muscle LIM-pro 62.6 3.7 0.00013 19.6 1.4 11 25-35 6-16 (72)
136 2lv9_A Histone-lysine N-methyl 62.5 0.99 3.4E-05 23.6 -0.8 44 23-67 27-75 (98)
137 1wen_A Inhibitor of growth fam 62.3 4 0.00014 20.0 1.5 46 22-70 14-67 (71)
138 2jmo_A Parkin; IBR, E3 ligase, 61.4 0.18 6.3E-06 25.5 -3.7 31 24-54 25-68 (80)
139 1x62_A C-terminal LIM domain p 60.2 2.9 0.0001 20.4 0.8 37 24-69 15-51 (79)
140 2l4z_A DNA endonuclease RBBP8, 59.8 5.9 0.0002 21.3 2.0 27 24-50 61-88 (123)
141 1iml_A CRIP, cysteine rich int 59.8 4.9 0.00017 19.4 1.6 43 23-68 26-70 (76)
142 2hl7_A Cytochrome C-type bioge 59.7 3.8 0.00013 21.0 1.2 23 10-32 12-34 (84)
143 2dlo_A Thyroid receptor-intera 59.5 2.5 8.5E-05 20.7 0.4 29 25-53 42-72 (81)
144 2jne_A Hypothetical protein YF 59.4 0.13 4.4E-06 27.3 -4.5 41 24-70 32-72 (101)
145 1x6a_A LIMK-2, LIM domain kina 59.0 11 0.00037 18.3 2.8 13 43-55 63-75 (81)
146 2cu8_A Cysteine-rich protein 2 58.8 4.1 0.00014 19.6 1.2 11 25-35 10-20 (76)
147 2cuq_A Four and A half LIM dom 58.4 5.7 0.00019 19.3 1.7 10 26-35 17-26 (80)
148 1mm2_A MI2-beta; PHD, zinc fin 58.2 1.3 4.4E-05 21.1 -0.8 45 23-69 8-57 (61)
149 2l3k_A Rhombotin-2, linker, LI 57.8 12 0.00041 19.9 3.1 34 24-57 36-71 (123)
150 1x68_A FHL5 protein; four-and- 57.7 3.8 0.00013 19.8 1.0 37 25-70 6-46 (76)
151 1weu_A Inhibitor of growth fam 57.6 3.8 0.00013 21.2 1.0 46 22-70 34-87 (91)
152 3c5k_A HD6, histone deacetylas 57.4 3.4 0.00011 22.1 0.7 25 24-48 24-48 (109)
153 1wem_A Death associated transc 57.3 1.7 5.8E-05 21.5 -0.4 45 24-69 16-71 (76)
154 1x4k_A Skeletal muscle LIM-pro 56.5 5.4 0.00018 18.9 1.4 10 26-35 7-16 (72)
155 3a1b_A DNA (cytosine-5)-methyl 56.3 5.8 0.0002 22.8 1.6 42 24-67 79-133 (159)
156 1j2o_A FLIN2, fusion of rhombo 55.0 14 0.00047 19.3 3.0 36 23-58 29-67 (114)
157 1zbd_B Rabphilin-3A; G protein 54.5 2.3 7.9E-05 23.6 -0.2 30 23-52 54-88 (134)
158 3o36_A Transcription intermedi 54.1 1.6 5.4E-05 25.2 -1.0 46 24-69 4-52 (184)
159 2js4_A UPF0434 protein BB2007; 53.7 1.2 4.1E-05 22.0 -1.3 42 21-79 5-46 (70)
160 2ctu_A Zinc finger protein 483 53.5 3.1 0.00011 19.2 0.2 16 23-38 17-32 (73)
161 2dj7_A Actin-binding LIM prote 53.3 3.4 0.00012 20.4 0.3 12 24-35 15-26 (80)
162 2ehe_A Four and A half LIM dom 52.6 7.3 0.00025 19.0 1.5 39 25-72 16-56 (82)
163 1x3h_A Leupaxin; paxillin fami 51.5 13 0.00044 17.9 2.4 32 25-56 42-74 (80)
164 2d8y_A Eplin protein; LIM doma 51.5 10 0.00035 18.9 2.0 33 24-56 42-75 (91)
165 3vhs_A ATPase wrnip1; zinc fin 51.0 4 0.00014 16.1 0.3 12 24-35 6-17 (29)
166 2vpb_A Hpygo1, pygopus homolog 49.6 8.2 0.00028 18.5 1.4 30 22-51 6-40 (65)
167 2egq_A FHL1 protein; LIM domai 49.2 6 0.00021 19.0 0.9 39 25-72 16-59 (77)
168 2iyb_E Testin, TESS, TES; LIM 47.7 5.2 0.00018 18.7 0.5 10 26-35 4-13 (65)
169 2uzg_A Ubiquitin carboxyl-term 47.7 10 0.00035 19.7 1.6 26 24-49 25-53 (97)
170 1we9_A PHD finger family prote 47.5 4.6 0.00016 19.1 0.3 47 22-68 4-58 (64)
171 1xwh_A Autoimmune regulator; P 47.3 0.68 2.3E-05 22.4 -2.8 45 23-69 7-56 (66)
172 3u5n_A E3 ubiquitin-protein li 47.1 1.4 4.9E-05 26.0 -2.0 45 23-69 6-55 (207)
173 2zet_C Melanophilin; complex, 46.8 5.3 0.00018 22.7 0.5 29 23-51 67-100 (153)
174 3asl_A E3 ubiquitin-protein li 46.4 1.5 5.1E-05 21.5 -1.7 42 26-67 20-68 (70)
175 1wff_A Riken cDNA 2810002D23 p 45.9 11 0.00037 19.4 1.5 26 24-49 25-52 (85)
176 4gut_A Lysine-specific histone 45.1 9.4 0.00032 27.0 1.6 33 25-57 14-56 (776)
177 1fp0_A KAP-1 corepressor; PHD 44.3 4.8 0.00017 20.8 0.0 45 22-68 23-72 (88)
178 1l8d_A DNA double-strand break 44.2 6.4 0.00022 20.7 0.5 11 60-70 48-58 (112)
179 2jvx_A NF-kappa-B essential mo 43.8 7.3 0.00025 15.7 0.6 8 25-32 4-11 (28)
180 2ri7_A Nucleosome-remodeling f 42.5 5.6 0.00019 22.6 0.1 45 22-67 6-58 (174)
181 2ysm_A Myeloid/lymphoid or mix 41.7 3.6 0.00012 21.7 -0.7 33 23-55 6-41 (111)
182 2ku3_A Bromodomain-containing 41.7 23 0.00079 17.2 2.3 46 22-67 14-65 (71)
183 2co8_A NEDD9 interacting prote 41.5 12 0.00041 18.3 1.3 40 24-72 15-55 (82)
184 4g9i_A Hydrogenase maturation 40.9 8.8 0.0003 27.3 0.9 23 47-69 159-188 (772)
185 1ard_A Yeast transcription fac 40.7 13 0.00045 13.1 1.1 12 25-36 3-14 (29)
186 2ro1_A Transcription intermedi 40.6 4.1 0.00014 23.7 -0.7 44 25-68 3-49 (189)
187 3ttc_A HYPF, transcriptional r 39.5 9 0.00031 26.8 0.8 23 47-69 70-99 (657)
188 2m0e_A Zinc finger and BTB dom 39.3 16 0.00055 12.7 2.0 12 60-71 3-14 (29)
189 2e6s_A E3 ubiquitin-protein li 39.2 2.1 7.1E-05 21.5 -1.8 42 26-67 28-76 (77)
190 1znf_A 31ST zinc finger from X 37.7 17 0.00057 12.6 1.2 10 26-35 3-12 (27)
191 2yql_A PHD finger protein 21A; 37.1 0.8 2.7E-05 21.4 -3.4 42 23-66 8-54 (56)
192 1g47_A Pinch protein; LIM doma 37.0 9.5 0.00033 18.2 0.5 10 25-34 12-21 (77)
193 2ffw_A Midline-1; B-BOX, ring 37.0 27 0.00092 17.1 2.2 31 23-53 29-62 (78)
194 1klr_A Zinc finger Y-chromosom 37.0 18 0.00062 12.7 1.4 12 25-36 3-14 (30)
195 2kvh_A Zinc finger and BTB dom 36.7 13 0.00046 13.0 0.8 10 25-34 4-13 (27)
196 1p7a_A BF3, BKLF, kruppel-like 36.7 21 0.0007 13.6 1.5 13 24-36 11-23 (37)
197 6rxn_A Rubredoxin; electron tr 36.5 17 0.00058 16.3 1.2 13 20-32 26-38 (46)
198 2kvf_A Zinc finger and BTB dom 36.4 14 0.00048 13.0 0.9 11 25-35 4-14 (28)
199 3shb_A E3 ubiquitin-protein li 35.8 1.8 6.2E-05 21.7 -2.4 42 26-67 28-76 (77)
200 3ask_A E3 ubiquitin-protein li 35.8 2.4 8.2E-05 25.7 -2.2 42 26-67 176-224 (226)
201 2elr_A Zinc finger protein 406 35.7 21 0.00073 13.4 1.5 13 24-36 9-21 (36)
202 3f6q_B LIM and senescent cell 35.5 12 0.0004 17.4 0.7 27 24-50 11-39 (72)
203 2apo_B Ribosome biogenesis pro 35.5 22 0.00076 16.9 1.6 17 60-76 19-35 (60)
204 3d00_A Tungsten formylmethanof 35.3 8.5 0.00029 22.6 0.1 25 23-52 162-186 (191)
205 3gox_A Restriction endonucleas 33.4 28 0.00096 20.7 2.1 47 24-70 75-148 (200)
206 1a7i_A QCRP2 (LIM1); LIM domai 33.3 6.5 0.00022 19.1 -0.5 32 25-56 35-67 (81)
207 3vth_A Hydrogenase maturation 33.2 11 0.00039 26.7 0.5 23 47-69 164-193 (761)
208 2lvu_A Zinc finger and BTB dom 39.3 9.1 0.00031 13.4 0.0 10 26-35 4-13 (26)
209 1paa_A Yeast transcription fac 33.1 22 0.00076 12.5 1.2 12 25-36 3-14 (30)
210 2m0d_A Zinc finger and BTB dom 32.3 17 0.00059 12.7 0.8 11 25-35 4-14 (30)
211 1x4v_A Hypothetical protein LO 32.0 35 0.0012 16.3 2.0 38 24-65 12-52 (63)
212 2wbt_A B-129; zinc finger; 2.7 32.0 55 0.0019 16.7 3.1 14 58-71 99-112 (129)
213 1yk4_A Rubredoxin, RD; electro 31.3 23 0.00078 16.2 1.2 13 20-32 31-43 (52)
214 2yte_A Zinc finger protein 473 31.3 28 0.00095 13.7 1.5 15 23-37 9-23 (42)
215 2g45_A Ubiquitin carboxyl-term 31.2 19 0.00066 19.7 1.1 25 24-48 34-58 (129)
216 2b0o_E UPLC1; arfgap, structur 31.0 57 0.0019 19.8 3.4 37 16-52 34-70 (301)
217 2lvr_A Zinc finger and BTB dom 37.2 10 0.00035 13.6 0.0 11 25-35 4-14 (30)
218 1e8j_A Rubredoxin; iron-sulfur 30.6 19 0.00065 16.5 0.9 12 21-32 33-44 (52)
219 4rxn_A Rubredoxin; electron tr 30.6 24 0.00082 16.4 1.2 13 20-32 32-44 (54)
220 1lv3_A Hypothetical protein YA 30.3 14 0.00048 18.1 0.4 10 61-70 11-20 (68)
221 2v3b_B Rubredoxin 2, rubredoxi 30.2 24 0.00081 16.4 1.2 13 20-32 32-44 (55)
222 2lvt_A Zinc finger and BTB dom 36.3 11 0.00037 13.5 0.0 12 25-36 3-14 (29)
223 2elq_A Zinc finger protein 406 30.1 20 0.00069 13.6 0.9 13 24-36 9-21 (36)
224 2eos_A B-cell lymphoma 6 prote 29.9 32 0.0011 13.5 1.6 15 23-37 10-24 (42)
225 2elx_A Zinc finger protein 406 29.8 20 0.00068 13.4 0.8 13 24-36 7-19 (35)
226 1rik_A E6APC1 peptide; E6-bind 29.7 17 0.00059 12.7 0.6 12 25-36 3-14 (29)
227 2kwj_A Zinc finger protein DPF 29.6 9.9 0.00034 20.2 -0.2 12 41-52 28-39 (114)
228 2ct7_A Ring finger protein 31; 29.3 4 0.00014 20.6 -1.8 29 26-54 27-61 (86)
229 2enh_A Zinc finger protein 28 29.1 33 0.0011 13.9 1.6 15 23-37 11-25 (46)
230 2ytb_A Zinc finger protein 32; 29.1 32 0.0011 13.5 1.5 15 23-37 10-24 (42)
231 2en7_A Zinc finger protein 268 28.7 32 0.0011 13.6 1.5 15 23-37 11-25 (44)
232 2eov_A Zinc finger protein 484 28.4 34 0.0012 13.8 1.6 15 23-37 11-25 (46)
233 2eq2_A Zinc finger protein 347 28.3 35 0.0012 13.8 1.6 15 23-37 11-25 (46)
234 2eon_A ZFP-95, zinc finger pro 28.3 34 0.0012 13.9 1.6 15 23-37 11-25 (46)
235 2elt_A Zinc finger protein 406 28.3 22 0.00074 13.4 0.8 13 24-36 9-21 (36)
236 2jrp_A Putative cytoplasmic pr 27.8 40 0.0014 17.0 1.9 15 62-76 54-68 (81)
237 2enf_A Zinc finger protein 347 27.8 36 0.0012 13.7 1.6 15 23-37 11-25 (46)
238 2yti_A Zinc finger protein 347 27.7 35 0.0012 13.8 1.5 15 23-37 11-25 (46)
239 1rim_A E6APC2 peptide; E6-bind 27.7 30 0.001 12.9 1.2 12 25-36 3-14 (33)
240 1dx8_A Rubredoxin; electron tr 27.5 27 0.00091 17.1 1.2 14 19-32 35-48 (70)
241 2emg_A Zinc finger protein 484 27.2 36 0.0012 13.7 1.5 15 23-37 11-25 (46)
242 2kdx_A HYPA, hydrogenase/ureas 26.9 19 0.00064 19.2 0.6 21 41-68 78-99 (119)
243 2m0f_A Zinc finger and BTB dom 26.9 19 0.00064 12.5 0.5 12 25-36 3-14 (29)
244 1wev_A Riken cDNA 1110020M19; 26.7 13 0.00043 18.9 -0.1 46 24-69 16-73 (88)
245 2lq6_A Bromodomain-containing 26.5 64 0.0022 16.2 2.6 33 21-53 14-50 (87)
246 2kvg_A Zinc finger and BTB dom 26.5 17 0.00057 12.8 0.3 10 25-34 4-13 (27)
247 2ely_A Zinc finger protein 224 26.5 42 0.0014 13.5 1.7 15 23-37 11-25 (46)
248 2eoq_A Zinc finger protein 224 26.4 40 0.0014 13.6 1.6 15 23-37 11-25 (46)
249 2ep1_A Zinc finger protein 484 26.3 39 0.0014 13.5 1.6 15 23-37 11-25 (46)
250 2en9_A Zinc finger protein 28 26.3 38 0.0013 13.7 1.5 15 23-37 11-25 (46)
251 2eq1_A Zinc finger protein 347 26.2 38 0.0013 13.6 1.5 15 23-37 11-25 (46)
252 2els_A Zinc finger protein 406 26.0 24 0.00083 13.3 0.8 13 24-36 9-21 (36)
253 2elp_A Zinc finger protein 406 25.9 27 0.00092 13.3 0.9 13 24-36 9-21 (37)
254 2yth_A Zinc finger protein 224 25.8 40 0.0014 13.6 1.6 15 23-37 11-25 (46)
255 2eou_A Zinc finger protein 473 25.8 40 0.0014 13.4 1.5 15 23-37 11-25 (44)
256 2eoh_A Zinc finger protein 28 25.7 42 0.0014 13.5 1.6 15 23-37 11-25 (46)
257 2ytr_A Zinc finger protein 347 25.6 39 0.0013 13.6 1.5 15 23-37 11-25 (46)
258 2epz_A Zinc finger protein 28 25.6 40 0.0014 13.6 1.5 15 23-37 11-25 (46)
259 1srk_A Zinc finger protein ZFP 25.5 25 0.00086 13.1 0.8 13 24-36 7-19 (35)
260 1zfo_A LAsp-1; LIM domain, zin 25.5 16 0.00053 14.6 0.1 10 25-34 4-13 (31)
261 2emz_A ZFP-95, zinc finger pro 25.4 42 0.0014 13.5 1.6 15 23-37 11-25 (46)
262 2elz_A Zinc finger protein 224 25.3 41 0.0014 13.6 1.5 15 23-37 11-25 (46)
263 2emk_A Zinc finger protein 28 25.3 44 0.0015 13.5 1.6 15 23-37 11-25 (46)
264 2em6_A Zinc finger protein 224 25.1 43 0.0015 13.5 1.6 14 23-36 11-24 (46)
265 2eom_A ZFP-95, zinc finger pro 24.8 42 0.0014 13.6 1.5 15 23-37 11-25 (46)
266 2ytn_A Zinc finger protein 347 24.6 41 0.0014 13.5 1.5 15 23-37 11-25 (46)
267 2epx_A Zinc finger protein 28 24.6 45 0.0015 13.4 1.6 15 23-37 11-25 (47)
268 2em0_A Zinc finger protein 224 24.5 44 0.0015 13.4 1.6 15 23-37 11-25 (46)
269 2kn9_A Rubredoxin; metalloprot 24.3 27 0.00092 17.7 0.9 13 20-32 56-68 (81)
270 1x4w_A Hypothetical protein FL 24.3 19 0.00063 17.6 0.2 27 23-49 14-44 (67)
271 2kgg_A Histone demethylase jar 24.2 24 0.00081 15.8 0.6 41 26-66 4-52 (52)
272 2elv_A Zinc finger protein 406 24.2 29 0.00098 13.1 0.8 13 24-36 9-21 (36)
273 1wfh_A Zinc finger (AN1-like) 24.2 52 0.0018 15.9 1.8 27 23-49 14-41 (64)
274 2eq4_A Zinc finger protein 224 24.0 44 0.0015 13.4 1.5 15 23-37 11-25 (46)
275 2eop_A Zinc finger protein 268 24.0 44 0.0015 13.4 1.5 15 23-37 11-25 (46)
276 2ytq_A Zinc finger protein 268 23.7 48 0.0017 13.3 1.6 15 23-37 11-25 (46)
277 2ytm_A Zinc finger protein 28 23.2 45 0.0015 13.5 1.4 15 23-37 11-25 (46)
278 2el5_A Zinc finger protein 268 23.1 30 0.001 13.6 0.8 14 23-36 9-22 (42)
279 2lcq_A Putative toxin VAPC6; P 23.1 19 0.00066 20.1 0.2 9 61-69 150-158 (165)
280 2epv_A Zinc finger protein 268 22.7 31 0.0011 13.9 0.8 13 24-36 12-24 (44)
281 2elo_A Zinc finger protein 406 22.7 27 0.00091 13.2 0.6 13 24-36 9-21 (37)
282 2ytt_A Zinc finger protein 473 22.5 51 0.0017 13.2 1.5 15 23-37 11-25 (46)
283 2k5c_A Uncharacterized protein 22.5 21 0.00071 18.3 0.2 13 24-36 51-63 (95)
284 2yu5_A Zinc finger protein 473 22.4 34 0.0012 13.6 0.9 14 24-37 12-25 (44)
285 1yuz_A Nigerythrin; rubrythrin 22.3 65 0.0022 18.8 2.4 9 60-68 187-195 (202)
286 2eof_A Zinc finger protein 268 22.3 32 0.0011 13.6 0.8 15 23-37 11-25 (44)
287 2crr_A Stromal membrane-associ 22.2 1.1E+02 0.0038 16.9 3.8 37 16-52 21-57 (141)
288 1wg2_A Zinc finger (AN1-like) 22.0 62 0.0021 15.6 1.9 44 23-70 14-58 (64)
289 2eps_A POZ-, at HOOK-, and zin 21.6 61 0.0021 13.7 1.9 38 23-71 11-53 (54)
290 1s24_A Rubredoxin 2; electron 21.4 43 0.0015 17.2 1.3 11 21-31 65-75 (87)
291 1njq_A Superman protein; zinc- 21.3 33 0.0011 13.3 0.7 13 24-36 6-18 (39)
292 2epc_A Zinc finger protein 32; 21.1 36 0.0012 13.3 0.9 13 24-36 11-23 (42)
293 2emi_A Zinc finger protein 484 21.0 35 0.0012 13.8 0.8 15 23-37 11-25 (46)
294 2ept_A Zinc finger protein 32; 20.8 36 0.0012 13.3 0.8 13 24-36 10-22 (41)
295 2eml_A Zinc finger protein 28 20.8 36 0.0012 13.7 0.8 15 23-37 11-25 (46)
296 2ytf_A Zinc finger protein 268 20.8 36 0.0012 13.7 0.8 15 23-37 11-25 (46)
297 2kfq_A FP1; protein, de novo p 20.7 34 0.0012 12.6 0.7 10 25-34 3-12 (32)
298 2emj_A Zinc finger protein 28 20.7 36 0.0012 13.8 0.8 15 23-37 11-25 (46)
299 2eoj_A Zinc finger protein 268 20.6 31 0.0011 13.7 0.6 15 23-37 11-25 (44)
300 2em5_A ZFP-95, zinc finger pro 20.6 37 0.0013 13.7 0.9 15 23-37 11-25 (46)
301 2ytg_A ZFP-95, zinc finger pro 20.6 38 0.0013 13.7 0.9 15 23-37 11-25 (46)
302 2en3_A ZFP-95, zinc finger pro 20.5 39 0.0013 13.6 0.9 15 23-37 11-25 (46)
303 2em3_A Zinc finger protein 28 20.5 37 0.0013 13.7 0.8 15 23-37 11-25 (46)
304 2aus_D NOP10, ribosome biogene 20.4 43 0.0015 15.9 1.1 13 61-73 19-31 (60)
305 2yts_A Zinc finger protein 484 20.4 37 0.0013 13.6 0.8 14 23-36 11-24 (46)
306 2eoy_A Zinc finger protein 473 20.4 40 0.0014 13.6 0.9 15 23-37 11-25 (46)
307 2eow_A Zinc finger protein 347 20.2 37 0.0013 13.7 0.8 15 23-37 11-25 (46)
No 1
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=97.65 Aligned_cols=65 Identities=23% Similarity=0.567 Sum_probs=56.3
Q ss_pred HHHHHHhcCCcccCccCccCccCcee-cCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeee
Q psy10800 14 MLEEIREYKETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 78 (81)
Q Consensus 14 ~~~~~~~~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 78 (81)
.......+.+.+.|+||++.+.+|+. ++|||+||..||.+|+......||.||..+...++...+
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 34456677889999999999999999 999999999999999997657899999999887776653
No 2
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.76 E-value=8.6e-19 Score=88.19 Aligned_cols=59 Identities=20% Similarity=0.656 Sum_probs=51.6
Q ss_pred CcccCccCcc-CccCc----eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeecCC
Q psy10800 23 ETLTCPSCKV-KRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLGS 81 (81)
Q Consensus 23 ~~~~C~iC~~-~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 81 (81)
+++.|+||++ .+.+| +.++|||+||..|+.+|+......||.||+.+...++...++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~d 65 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFED 65 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecccC
Confidence 4678999999 88888 57899999999999999876667799999999999999887764
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.75 E-value=8.9e-19 Score=90.86 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=50.4
Q ss_pred hcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+..+...||.||..+...++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 356789999999999999999999999999999999865678999999998766654
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.74 E-value=4.3e-19 Score=90.44 Aligned_cols=59 Identities=34% Similarity=0.801 Sum_probs=52.5
Q ss_pred hcCCcccCccCccCccCc-------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 20 EYKETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
...+...|+||++.+.++ +.++|||+||..|+.+|+... ..||+||..+...++.++|+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeeccC
Confidence 345678999999999887 889999999999999999865 68999999999999998875
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=87.53 Aligned_cols=55 Identities=20% Similarity=0.527 Sum_probs=48.6
Q ss_pred hcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCc
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+......||.||+.+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4567899999999999999999999999999999997556789999999887654
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=86.68 Aligned_cols=56 Identities=34% Similarity=0.848 Sum_probs=50.5
Q ss_pred CcccCccCccCccCc-------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 23 ETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
+.+.|+||++.+.++ +.++|||.||..|+.+|+.. ...||.||+.+...++.++|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 467999999999876 78899999999999999986 478999999999999999885
No 7
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.73 E-value=3.1e-18 Score=94.00 Aligned_cols=70 Identities=26% Similarity=0.524 Sum_probs=57.2
Q ss_pred CCchHHHHHHHHhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCC--CCCCCCCcCcCcCCceee
Q psy10800 8 GTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~ 77 (81)
....+.+......+.+.+.|+||++.+.+|+.++|||+||..|+..|+.... ..||.||..+...++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 5 ALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp GSSHHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred HHHHHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 3344555556667778899999999999999999999999999999998543 479999999987776543
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=87.23 Aligned_cols=56 Identities=30% Similarity=0.611 Sum_probs=48.7
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhh--CCCCCCCCCcCcCcCCc
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKCNAAFGANDY 74 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~ 74 (81)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ....||+||+.+...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 456778999999999999999999999999999999973 34579999999887664
No 9
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=95.66 Aligned_cols=54 Identities=28% Similarity=0.658 Sum_probs=47.9
Q ss_pred HHhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 18 IREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+......||.||..+..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 445566789999999999999999999999999999998665689999999876
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=87.00 Aligned_cols=60 Identities=30% Similarity=0.697 Sum_probs=51.9
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhC-----CCCCCCCCcCcCcCCceeee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR-----QRKCPKCNAAFGANDYHRLY 78 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~ 78 (81)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+... ...||.||..+...++...+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 4466789999999999999999999999999999999873 46799999999887766543
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.3e-18 Score=86.57 Aligned_cols=58 Identities=28% Similarity=0.591 Sum_probs=50.1
Q ss_pred HhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
..+++.+.|+||++.+.+|+.+ +|||+||..|+.+|+.. ...||+||..+...++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4466789999999999999887 99999999999999985 4789999999987776543
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=88.74 Aligned_cols=56 Identities=27% Similarity=0.580 Sum_probs=47.5
Q ss_pred hcCCcccCccCccCccCceecC-CCChhHHHHHHHHHhhCC-CCCCCCCcCc-CcCCce
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQ-RKCPKCNAAF-GANDYH 75 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~-~~CP~Cr~~~-~~~~~~ 75 (81)
.+.+.+.|+||++.+.+|+.++ |||+||..|+.+|+.... ..||.||..+ ...++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 4677899999999999999999 999999999999997543 6799999997 344443
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.70 E-value=7.1e-18 Score=95.91 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=45.6
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
+.+.+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||+||+.+..
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred HhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 344567899999999999999999999999999999984 5779999998864
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=87.92 Aligned_cols=59 Identities=25% Similarity=0.594 Sum_probs=50.1
Q ss_pred HhcCCcccCccCccCccC----ceecCCCChhHHHHHHHHHhhC--CCCCCCCCcCcCcCCceee
Q psy10800 19 REYKETLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETR--QRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~ 77 (81)
+.+.+.+.|+||++.+.+ |+.++|||+||..|+.+|+... ...||+||..+...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 346678999999999998 9999999999999999999865 4679999999877665443
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-18 Score=90.26 Aligned_cols=58 Identities=21% Similarity=0.590 Sum_probs=49.8
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhC------CCCCCCCCcCcCcCCcee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETR------QRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~~CP~Cr~~~~~~~~~~ 76 (81)
+.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+... ...||.||..+...++..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 3466789999999999999999999999999999999853 467999999998766543
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=86.02 Aligned_cols=55 Identities=29% Similarity=0.596 Sum_probs=47.0
Q ss_pred HhcCCcccCccCccCccCceecC-CCChhHHHHHHHHHhhCC-CCCCCCCcCcCcCC
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQ-RKCPKCNAAFGAND 73 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 73 (81)
..+.+.+.|+||++.+.+|+.++ |||+||..||.+|+.... ..||.||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567899999999999999999 999999999999998643 57999999865443
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=86.16 Aligned_cols=59 Identities=25% Similarity=0.595 Sum_probs=50.8
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhh-----CCCCCCCCCcCcCcCCceee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET-----RQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~ 77 (81)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ....||.||..+...++...
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 456678999999999999999999999999999999986 25679999999987766543
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-17 Score=85.19 Aligned_cols=56 Identities=20% Similarity=0.414 Sum_probs=48.0
Q ss_pred cCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 21 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
..+.+.|+||++.+.+++.++|||.||..|+.+|+.. ...||+||..+...++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhccCC
Confidence 3457899999999999999999999999999999884 4789999999887655443
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=80.48 Aligned_cols=47 Identities=34% Similarity=0.699 Sum_probs=41.7
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhh--CCCCCCCC
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKC 65 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~~CP~C 65 (81)
+.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+.. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456778999999999999999999999999999999985 34579987
No 20
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.66 E-value=6.3e-17 Score=85.41 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=50.4
Q ss_pred hcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
.+.+.+.||||++++.+|++++|||+||..||.+|+.. ...||.|+..+...++...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEEC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchH
Confidence 45678999999999999999999999999999999995 5789999999987766543
No 21
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.5e-17 Score=94.34 Aligned_cols=52 Identities=31% Similarity=0.798 Sum_probs=46.9
Q ss_pred cCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 21 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+.+.|+||++.+.+|+.++|||+||..|+.+|+......||.||..+...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4457899999999999999999999999999999997656899999998865
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.66 E-value=3.4e-17 Score=88.31 Aligned_cols=58 Identities=22% Similarity=0.552 Sum_probs=49.2
Q ss_pred HHhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 18 IREYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
...+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.. ...||.||..+...++..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEE
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCc
Confidence 34455678999999999999888 99999999999999984 478999999998766554
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.7e-17 Score=83.71 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=44.9
Q ss_pred hcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
.....+.|+||++.+.+|++++|||+||..|+.+|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 34567899999999999999999999999999999985 467999999886
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.65 E-value=5.2e-17 Score=90.14 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=50.2
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCce
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (81)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+......||.||..+...++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence 356678999999999999999999999999999999987656899999998876554
No 25
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.65 E-value=4e-17 Score=90.25 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=48.0
Q ss_pred CCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCce
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (81)
.+.+.|+||++.+.+|+.++|||+||..|+.+|+......||.||..+...++.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 346899999999999999999999999999999997667899999998876654
No 26
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.65 E-value=1.1e-16 Score=86.86 Aligned_cols=58 Identities=7% Similarity=-0.006 Sum_probs=51.2
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
..+.+.+.||||++++.+|++++|||+||..||.+|+. ....||.|+..+...++.+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEEC
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceEC
Confidence 34567899999999999999999999999999999998 45789999999988776654
No 27
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.65 E-value=1.6e-17 Score=92.05 Aligned_cols=62 Identities=21% Similarity=0.492 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 12 EVMLEEIREYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 12 ~~~~~~~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.........+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+. ..||.||..+...++..
T Consensus 10 ~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 10 AHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCC
T ss_pred cchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccc
Confidence 33455667778899999999999999999 9999999999999987 67999999987666543
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.64 E-value=9.2e-17 Score=89.97 Aligned_cols=58 Identities=36% Similarity=0.871 Sum_probs=51.8
Q ss_pred CCcccCccCccCccCc-------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeecC
Q psy10800 22 KETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLG 80 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 80 (81)
.+.+.|+||++.+.+| +.++|||+||..|+.+|+.. ...||.||+.+...++..++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccccccC
Confidence 4678999999999888 89999999999999999985 4689999999999888888765
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.64 E-value=1.4e-16 Score=87.07 Aligned_cols=54 Identities=31% Similarity=0.643 Sum_probs=47.5
Q ss_pred HHhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 18 IREYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
...+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+... ..||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 34567789999999999999987 999999999999999854 7899999998764
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.63 E-value=2.4e-16 Score=85.14 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=51.2
Q ss_pred HhcCCcccCccCccCccCceecCCC-ChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
..+.+.+.||||++++.+|++++|| |+||..||.+|+.. ...||+|+..+...++.+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEEC
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEc
Confidence 3456789999999999999999999 99999999999985 5789999999988776654
No 31
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=80.21 Aligned_cols=51 Identities=33% Similarity=0.755 Sum_probs=44.5
Q ss_pred hcCCcccCccCccCccCc-------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 20 EYKETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
.+.+...|+||++.+.++ +.++|||.||..|+.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 356688999999999876 88999999999999999986 4789999998764
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=77.08 Aligned_cols=47 Identities=30% Similarity=0.735 Sum_probs=41.0
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhh--CCCCCCCC
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET--RQRKCPKC 65 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~~CP~C 65 (81)
+.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+.. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999999999999999999999999764 45679987
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.62 E-value=3.7e-17 Score=95.20 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=45.8
Q ss_pred HhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 19 REYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
..+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+......||.||..+..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3455678999999999999887 9999999999999999656789999998854
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-17 Score=82.53 Aligned_cols=59 Identities=24% Similarity=0.573 Sum_probs=49.5
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
..+.+...|+||++.+.+ +.++|||.||..|+.+|+. ....||+||..+...+...+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccccCC
Confidence 345668899999999998 8999999999999999988 5578999999998766554444
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.61 E-value=5.4e-17 Score=83.62 Aligned_cols=58 Identities=24% Similarity=0.572 Sum_probs=48.3
Q ss_pred HHHHHhcCCcccCccCccCccCceecCCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 15 LEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+....+.+...|+||++.+.+++.++|||. ||..|+..| ..||+||..+.. ..++|+
T Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~ 73 (74)
T 4ic3_A 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF--KQKILM 73 (74)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE--EEECBC
T ss_pred HHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC--cEEEee
Confidence 3445566778899999999999999999999 999999876 679999998865 566664
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.61 E-value=5e-16 Score=80.79 Aligned_cols=57 Identities=18% Similarity=0.419 Sum_probs=45.8
Q ss_pred hcCCcccCccCccCcc--CceecC--CCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 20 EYKETLTCPSCKVKRK--DAVLTK--CFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~--~~~~~~--CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.+++.+.||||++.+. ++..++ |||.||..|+.+++......||.||+.+....+..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3567899999999884 344444 99999999999998766678999999998776543
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.59 E-value=6.1e-17 Score=89.38 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=44.2
Q ss_pred CCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
.+.+.|+||++.+.+|+.++|||+||..|+.+|+......||.||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3468999999999999999999999999999999865678999999875
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=5.7e-16 Score=80.16 Aligned_cols=56 Identities=23% Similarity=0.509 Sum_probs=46.7
Q ss_pred hcCCcccCccCccCccCc---eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 20 EYKETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.......|+||++.+..+ +.++|||.||..|+.+|+.. ...||+||+.+...++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCC
Confidence 345678999999998765 56799999999999999984 478999999998776554
No 39
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.2e-16 Score=90.16 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=46.5
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
..+++.+.|+||++.+.+|+.++|||+||..||.+|+......||.||..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4567889999999999999999999999999999999866568999998753
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.58 E-value=5.2e-16 Score=86.89 Aligned_cols=57 Identities=35% Similarity=0.845 Sum_probs=50.9
Q ss_pred CCcccCccCccCccCc-------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 22 KETLTCPSCKVKRKDA-------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+...|+||++.+.++ +.++|||.||..|+.+|+... ..||.||..+..+++.++|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeeeC
Confidence 4578899999988776 888999999999999999854 68999999999999999985
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=9.9e-16 Score=94.59 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCcee
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.+.+.||||++.+.+|++++|||+||..||.+|+......||.|+.++...++.+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 3589999999999999999999999999999999876556999999998776654
No 42
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=89.35 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=50.2
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCce
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (81)
..+.+.+.|+||++.+.+|+.++|||+||..|+.+|+......||.||..+...++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh
Confidence 356778999999999999999999999999999999987656899999998876544
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=1.1e-15 Score=74.30 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=41.8
Q ss_pred cCCcccCccCccCccC---ceecC-CCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 21 YKETLTCPSCKVKRKD---AVLTK-CFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
+++...|+||++.+.+ ++.++ |||.||..|+.+|+.. ...||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4567899999999877 57776 9999999999999985 578999998764
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.57 E-value=1.6e-15 Score=73.58 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=41.3
Q ss_pred CcccCccCccCccC----ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 23 ETLTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 23 ~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
....|+||++.+.+ ++.++|||.||..|+.+|+... ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999865 6888999999999999999966 78999998764
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=81.40 Aligned_cols=56 Identities=29% Similarity=0.511 Sum_probs=46.9
Q ss_pred cCCcccCccCccCccCceecC-CCChhHHHHHHHHHhhC-----CCCCCC--CCcC-cCcCCcee
Q psy10800 21 YKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETR-----QRKCPK--CNAA-FGANDYHR 76 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~ 76 (81)
..+.+.||||+++|.+|++++ |||+||..||.+|+... ...||. |+.. +...++.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 456799999999999999995 99999999999999853 357999 8876 66666554
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.56 E-value=2.5e-15 Score=88.66 Aligned_cols=57 Identities=5% Similarity=-0.047 Sum_probs=49.9
Q ss_pred cCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 21 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
+.+.+.||||++++.+|++++|||+||..||..|+......||.|+.++...++.+.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 345799999999999999999999999999999998654579999999987776654
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.55 E-value=2.2e-15 Score=76.00 Aligned_cols=48 Identities=23% Similarity=0.685 Sum_probs=42.4
Q ss_pred CCcccCccCccCccCc-eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 22 KETLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
.....|+||++.+.++ +.++|||.||..|+.+|+... ..||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence 3467899999999986 788999999999999999854 78999999875
No 48
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-16 Score=79.05 Aligned_cols=58 Identities=24% Similarity=0.604 Sum_probs=46.7
Q ss_pred HHHHHhcCCcccCccCccCccCceecCCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 15 LEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+....+.+...|+||++.+.+++.++|||. ||..|+.. ...||+||..+.. ..++|+
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~--~~~i~~ 74 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF--KQKIFM 74 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC--CCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC--cEEEec
Confidence 3445556677899999999999999999999 99999963 2679999998865 455554
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=79.60 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=41.9
Q ss_pred CCcccCccCccCccC---ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 22 KETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
.+...|+||++.+.. ++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 356789999998876 677899999999999999984 4689999998754
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=74.70 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=42.1
Q ss_pred cCCcccCccCccCcc---CceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 21 YKETLTCPSCKVKRK---DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
......|+||++.+. .++.++|||.||..|+.+|+... ..||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 455789999999885 34788999999999999999864 679999998764
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-15 Score=77.91 Aligned_cols=51 Identities=25% Similarity=0.549 Sum_probs=43.5
Q ss_pred cCCcccCccCccCccCc---eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 21 YKETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
..+...|+||++.+..+ +.++|||.||..|+.+|+... ..||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCCC
Confidence 34578999999998776 778999999999999999864 6899999988653
No 52
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.53 E-value=1e-15 Score=79.78 Aligned_cols=61 Identities=26% Similarity=0.628 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCcccCccCccCccCceecCCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeecC
Q psy10800 13 VMLEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLG 80 (81)
Q Consensus 13 ~~~~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 80 (81)
.++++.+.+.+...|+||++.+.+++.++|||. ||..|+..+ ..||+||..+.. ..++|++
T Consensus 7 ~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~p 68 (79)
T 2yho_A 7 VLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH--VQHVYLP 68 (79)
T ss_dssp THHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE--EEECBCT
T ss_pred HHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC--eEEEEeC
Confidence 345556667778899999999999999999999 999998754 379999998865 4555543
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=1.2e-15 Score=74.63 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=40.7
Q ss_pred CCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||.||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 46789999999999999999999999999875 346799999987643
No 54
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-15 Score=74.83 Aligned_cols=51 Identities=29% Similarity=0.526 Sum_probs=42.9
Q ss_pred hcCCcccCccCccCccCc---eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 20 EYKETLTCPSCKVKRKDA---VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
.+.....|+||++.+..+ +.++|||.||..|+.+|+... ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 456678999999998766 344999999999999999865 589999998864
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.51 E-value=2e-14 Score=93.07 Aligned_cols=56 Identities=23% Similarity=0.523 Sum_probs=48.1
Q ss_pred HhcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCc
Q psy10800 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
+.......|+||++.+.+++.++|||.||..|+..|+......||+||..+.....
T Consensus 327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred hhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 44455689999999999999999999999999999998666789999999876443
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.2e-14 Score=79.96 Aligned_cols=48 Identities=35% Similarity=0.667 Sum_probs=39.9
Q ss_pred cccCccCccCccCce------------------ecCCCChhHHHHHHHHHhh----CCCCCCCCCcCcCc
Q psy10800 24 TLTCPSCKVKRKDAV------------------LTKCFHVFCWDCLRTRYET----RQRKCPKCNAAFGA 71 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~------------------~~~CgH~fc~~Ci~~~~~~----~~~~CP~Cr~~~~~ 71 (81)
+..|+||++.|..+. .++|||.||..||..|+.. ....||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 469999999986643 7899999999999999963 34579999998764
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.50 E-value=1.6e-14 Score=72.42 Aligned_cols=54 Identities=22% Similarity=0.572 Sum_probs=46.3
Q ss_pred CcccCccCccCccCceec--CCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
++..|+||++.+.+++.+ +|||. ||..|+.+|+. ....||+||+.+.. +.++|+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~--~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM--IVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE--EEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc--eEeeec
Confidence 467899999999999877 99999 89999999987 45779999998854 777776
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=74.02 Aligned_cols=50 Identities=28% Similarity=0.610 Sum_probs=40.1
Q ss_pred CcccCccCccCccC--------------ceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCC
Q psy10800 23 ETLTCPSCKVKRKD--------------AVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73 (81)
Q Consensus 23 ~~~~C~iC~~~~~~--------------~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
++..|+||++.+.+ ++.+ +|||.||..||.+|+... ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcchhh
Confidence 35679999998865 3344 699999999999999954 68999999886543
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=4.4e-14 Score=70.62 Aligned_cols=54 Identities=19% Similarity=0.557 Sum_probs=45.5
Q ss_pred CcccCccCccCccCceec--CCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
....|+||++...+++++ +|||. ||..|+.+++.. ...||+||+.+.. +.++|+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~--~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL--VIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE--EEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc--eEEEec
Confidence 356899999999998777 99998 999999998874 4789999999854 777764
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.2e-13 Score=85.31 Aligned_cols=58 Identities=29% Similarity=0.564 Sum_probs=49.1
Q ss_pred HhcCCcccCccCccCccCceec-CCCChhHHHHHHHHHhhC-CCCCCC--CCcCcCcCCcee
Q psy10800 19 REYKETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETR-QRKCPK--CNAAFGANDYHR 76 (81)
Q Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-~~~CP~--Cr~~~~~~~~~~ 76 (81)
......+.||||+++|.+|+.. .|||+||..||..|+... ...||. |+..+...++..
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 3456789999999999999974 999999999999999853 346999 999988777654
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=5.5e-13 Score=72.85 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=39.7
Q ss_pred CcccCccCccCccCc------------------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 23 ETLTCPSCKVKRKDA------------------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
+...|+||++.|..+ +.++|||.|+..||.+|+.. ...||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356899999988754 45799999999999999985 578999999865
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.7e-13 Score=67.48 Aligned_cols=52 Identities=23% Similarity=0.506 Sum_probs=43.5
Q ss_pred CCcccCccCccCccCceecCCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeecC
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLG 80 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 80 (81)
.+...|+||++...+++.++|||. ||..|+.. ...||+||..+.. +.++|.+
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc--eEEeecC
Confidence 457899999999999999999999 99999983 3679999998765 5666543
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.33 E-value=8.2e-13 Score=65.61 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=49.3
Q ss_pred cccCccCccCccCceec-CCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 24 TLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+.|||+++.+.+|+++ ++||+|+..+|.+|+... ..||+.+.++...++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 999999999999999854 56999999999999888764
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.32 E-value=2.1e-13 Score=87.37 Aligned_cols=60 Identities=32% Similarity=0.673 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCcccCccCccCccCceecCCCCh-hHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 13 VMLEEIREYKETLTCPSCKVKRKDAVLTKCFHV-FCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 13 ~~~~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+......+++...|+||++.+.+++.++|||. ||..|+..| ..||+||..+.. ..++|+
T Consensus 284 ~~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~--~~~i~~ 344 (345)
T 3t6p_A 284 SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG--TVRTFL 344 (345)
T ss_dssp CHHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE--EEECC-
T ss_pred cHHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC--eEEeec
Confidence 345566777888999999999999999999999 999999865 579999998864 556654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=9.7e-13 Score=70.20 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=41.7
Q ss_pred CCcccCccCccCccCcee---cCCCChhHHHHHHHHHhhC-------CCCCCC--CCcC--cCcCCce
Q psy10800 22 KETLTCPSCKVKRKDAVL---TKCFHVFCWDCLRTRYETR-------QRKCPK--CNAA--FGANDYH 75 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~---~~CgH~fc~~Ci~~~~~~~-------~~~CP~--Cr~~--~~~~~~~ 75 (81)
.+.+.|+||++.+..+.. ++|||.||..|+..++... ...||. |+.. +....+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 356899999999887743 3799999999999999742 246999 9988 6654443
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=62.94 Aligned_cols=50 Identities=22% Similarity=0.531 Sum_probs=41.2
Q ss_pred CcccCccCccCcc--CceecCCC-----ChhHHHHHHHHHhhCC-CCCCCCCcCcCcC
Q psy10800 23 ETLTCPSCKVKRK--DAVLTKCF-----HVFCWDCLRTRYETRQ-RKCPKCNAAFGAN 72 (81)
Q Consensus 23 ~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 72 (81)
+...|.||++.+. ++++++|+ |.|+..||.+|+.... ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4578999998774 56788996 9999999999998754 5799999988643
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.13 E-value=5.4e-12 Score=69.94 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=0.4
Q ss_pred cccCccCccCccCc------------------eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 24 TLTCPSCKVKRKDA------------------VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 24 ~~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
.-.|+||++.|.++ +.++|+|.|+..||.+|+.. ...||+||+.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 46899999988653 23589999999999999985 5789999998654
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.3e-09 Score=55.82 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=39.9
Q ss_pred CcccCccCccCccCcee-cCCCChhHHHHHHHHHhhCC-CCCCCCCcCcCc
Q psy10800 23 ETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETRQ-RKCPKCNAAFGA 71 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~-~~CP~Cr~~~~~ 71 (81)
....|+||.+.+..... ..|+|.|+..||.+||+... ..||.|+..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35789999998875533 38999999999999998642 679999998763
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.85 E-value=2.2e-09 Score=57.52 Aligned_cols=46 Identities=28% Similarity=0.699 Sum_probs=39.0
Q ss_pred cCccCccCccCc-eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 26 TCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 26 ~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
.|++|.-.+..- ..++|.|+||.+|+..|.+.....||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 588888777654 6779999999999999988777889999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.63 E-value=3.7e-08 Score=48.49 Aligned_cols=50 Identities=16% Similarity=0.397 Sum_probs=39.4
Q ss_pred CCcccCccCccCccCceecCCC--C---hhHHHHHHHHHhhC-CCCCCCCCcCcCc
Q psy10800 22 KETLTCPSCKVKRKDAVLTKCF--H---VFCWDCLRTRYETR-QRKCPKCNAAFGA 71 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~Cg--H---~fc~~Ci~~~~~~~-~~~CP~Cr~~~~~ 71 (81)
++...|.||++...++.++||. + .|+..|+.+|+... ...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3467899999877677778864 4 78999999999853 4679999988753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=7.1e-09 Score=66.46 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=38.6
Q ss_pred CCcccCccCccCccC----c----eecCCCChhHHHHHHHHHhhCC----------CCCCCCCcCcCc
Q psy10800 22 KETLTCPSCKVKRKD----A----VLTKCFHVFCWDCLRTRYETRQ----------RKCPKCNAAFGA 71 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~----~----~~~~CgH~fc~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 71 (81)
+....|+||+..+.+ | ....|||.|+..|+.+|+.... ..||+||++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346789999988765 2 1237999999999999997521 359999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.77 E-value=2.8e-05 Score=47.57 Aligned_cols=50 Identities=16% Similarity=0.447 Sum_probs=39.7
Q ss_pred CcccCccCccCccCceec-CCCChhHHHHHHHHHhhC-CCCCCCCCcCcCcC
Q psy10800 23 ETLTCPSCKVKRKDAVLT-KCFHVFCWDCLRTRYETR-QRKCPKCNAAFGAN 72 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 72 (81)
....|.+|.+.......- .|++.|+..|+..|++.. ...||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 367899999988765433 499999999999999864 35799999986543
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.76 E-value=1.4e-05 Score=56.84 Aligned_cols=59 Identities=10% Similarity=0.038 Sum_probs=50.5
Q ss_pred HHhcCCcccCccCccCccCceecCCC-ChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceee
Q psy10800 18 IREYKETLTCPSCKVKRKDAVLTKCF-HVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRL 77 (81)
Q Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
.....+.+.|||-.+++.+||+++-| ++|=...|.+|+.. ..+||+-|.++...++.+.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence 34556689999999999999999998 69999999999985 5789999999987776553
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.60 E-value=2.8e-05 Score=41.36 Aligned_cols=33 Identities=30% Similarity=0.689 Sum_probs=27.3
Q ss_pred CcccCccCccC-ccCcee--cCCCChhHHHHHHHHH
Q psy10800 23 ETLTCPSCKVK-RKDAVL--TKCFHVFCWDCLRTRY 55 (81)
Q Consensus 23 ~~~~C~iC~~~-~~~~~~--~~CgH~fc~~Ci~~~~ 55 (81)
+++.|++|.+. +..++. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 45789999975 667776 8999999999999743
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.84 E-value=0.009 Score=30.75 Aligned_cols=36 Identities=28% Similarity=0.747 Sum_probs=29.0
Q ss_pred CCcccCccCccCccCceecCC----CChhHHHHHHHHHhh
Q psy10800 22 KETLTCPSCKVKRKDAVLTKC----FHVFCWDCLRTRYET 57 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~C----gH~fc~~Ci~~~~~~ 57 (81)
...+.|.+|.+.+.+.-...| +|.||..|-..+++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346899999999988744444 799999999988875
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.039 Score=35.83 Aligned_cols=53 Identities=21% Similarity=0.500 Sum_probs=36.7
Q ss_pred CCcccCccCccCccCceec-CCCChhHHH--HHHHHH-hhCCCCCCCCCcCcCcCCc
Q psy10800 22 KETLTCPSCKVKRKDAVLT-KCFHVFCWD--CLRTRY-ETRQRKCPKCNAAFGANDY 74 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~-~CgH~fc~~--Ci~~~~-~~~~~~CP~Cr~~~~~~~~ 74 (81)
.-.+.||+-...+..|+.. .|.|..|.+ -+.... ......||+|.+.+...++
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 3478999999999999655 899984433 222222 2345679999998876554
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.88 E-value=0.044 Score=35.47 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=36.3
Q ss_pred CcccCccCccCccCceec-CCCChhHH--HHHHHHHh-hCCCCCCCCCcCcCcCCc
Q psy10800 23 ETLTCPSCKVKRKDAVLT-KCFHVFCW--DCLRTRYE-TRQRKCPKCNAAFGANDY 74 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~-~CgH~fc~--~Ci~~~~~-~~~~~CP~Cr~~~~~~~~ 74 (81)
-.+.||+-...+..|+.. .|.|..|. .-+..... .....||+|.+.+...++
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 368999999999999654 89998443 32222222 245679999998876654
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.45 E-value=0.036 Score=29.30 Aligned_cols=46 Identities=28% Similarity=0.698 Sum_probs=33.0
Q ss_pred cccCccCccCccCceecCC-CChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKDAVLTKC-FHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+-|..|.-..+ -++.| .|.+|..|+...+. ....||+|..++..+
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHh-hccCCcccCCcCCcc
Confidence 567777764444 35566 58889999997776 446699999887643
No 79
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=92.06 E-value=0.13 Score=24.80 Aligned_cols=40 Identities=33% Similarity=0.669 Sum_probs=29.0
Q ss_pred ccCccCccCccCce---ecCCCChhHHHHHHHHHhhCCCCCCCC
Q psy10800 25 LTCPSCKVKRKDAV---LTKCFHVFCWDCLRTRYETRQRKCPKC 65 (81)
Q Consensus 25 ~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~~CP~C 65 (81)
..|-.|+..+.+.. -..|++.||.+|=. ++.+....||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 46999998886543 33789999999943 445455679987
No 80
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=90.58 E-value=0.022 Score=24.53 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=11.9
Q ss_pred CCcccCccCccCccCc
Q psy10800 22 KETLTCPSCKVKRKDA 37 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~ 37 (81)
.+.+.||+|+..+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3468889988877665
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.30 E-value=0.67 Score=24.20 Aligned_cols=47 Identities=17% Similarity=0.495 Sum_probs=33.2
Q ss_pred cccCccCccCccC---c-eec---CCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 24 TLTCPSCKVKRKD---A-VLT---KCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 24 ~~~C~iC~~~~~~---~-~~~---~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
...|.||.+..-. . +.. .|+-..|..|++-=.+.....||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4689999986421 1 222 577777999997555555667999988775
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.86 E-value=0.34 Score=23.69 Aligned_cols=46 Identities=24% Similarity=0.567 Sum_probs=31.2
Q ss_pred CCcccCccCccCccCceec--CCCChhHHHHHHHHHhhC---CCCCCCCCcCc
Q psy10800 22 KETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYETR---QRKCPKCNAAF 69 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~~---~~~CP~Cr~~~ 69 (81)
.....|.||.+.- .+++ .|...|+..|+..-+... ...||.|....
T Consensus 10 ~~~~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456799998632 2333 788999999997655432 35699997654
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=88.16 E-value=0.27 Score=26.56 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.2
Q ss_pred cccCccCccCccC---ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCC
Q psy10800 24 TLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73 (81)
Q Consensus 24 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
-+.|..|...+.+ .....=|..||..|..+.+.. ...|..|...+....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 3788999888852 334456778999999887763 226999988887543
No 84
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=87.76 E-value=0.17 Score=25.19 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=21.7
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
++..|.+|...|.-- ---.||.+||..|..
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 346899999877532 122799999999864
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=86.85 E-value=1.4 Score=24.97 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=33.6
Q ss_pred CcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCC
Q psy10800 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
+-+.|..|...+.......=|..||..|..+.+. ..|..|...+...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCCc
Confidence 3578888988776543344578899999887665 45888877775443
No 86
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=86.76 E-value=0.82 Score=24.54 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=34.0
Q ss_pred cccCccCccCccCc-eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
-+.|..|...+... ....=|..||..|..+.+. ..|..|...+...
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCcC
Confidence 47888998877653 4445678899999876443 5699999988753
No 87
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.49 E-value=0.75 Score=23.80 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.7
Q ss_pred cCCcccCccCccCccCceec---CCCChhHHHHHHHH
Q psy10800 21 YKETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTR 54 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~ 54 (81)
+..+..|.||...-.+ .++ -|+.+|+..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 3457799999854433 344 47899999999985
No 88
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=84.71 E-value=0.25 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=22.4
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLRT 53 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~ 53 (81)
+...|.+|...|.-- ---.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 346899999877632 1227999999999753
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.37 E-value=1.1 Score=25.23 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=29.8
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHh----------hCCCCCCCCCc
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE----------TRQRKCPKCNA 67 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~----------~~~~~CP~Cr~ 67 (81)
+..|.+|.+--.--.--.|-.+||..|+.+-+. .....||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 568888886332111127889999999996553 24567999974
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.26 E-value=0.21 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.549 Sum_probs=20.9
Q ss_pred ccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 25 LTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 25 ~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
..|.+|...|.-. ---.||++||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 5799999877532 122799999999964
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.11 E-value=0.26 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=22.2
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLRT 53 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~ 53 (81)
+...|.+|...|.-- ---.||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 356899999877532 1227999999999653
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.19 E-value=0.16 Score=25.26 Aligned_cols=49 Identities=22% Similarity=0.632 Sum_probs=31.9
Q ss_pred CcccCccCccCccCc-eec--CCCChhHHHHHHHHHhh---CCCCCCCCCcCcCc
Q psy10800 23 ETLTCPSCKVKRKDA-VLT--KCFHVFCWDCLRTRYET---RQRKCPKCNAAFGA 71 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~-~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~~~~ 71 (81)
+...|++|....... ++. .|...|+..|+...... ....||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 456799998765442 333 67888999998633322 23569999766543
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.97 E-value=0.5 Score=21.55 Aligned_cols=42 Identities=29% Similarity=0.737 Sum_probs=26.1
Q ss_pred cCccCccCccCc-eec--CCCChhHHHHHHHHHhh---CCCCCCCCCc
Q psy10800 26 TCPSCKVKRKDA-VLT--KCFHVFCWDCLRTRYET---RQRKCPKCNA 67 (81)
Q Consensus 26 ~C~iC~~~~~~~-~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~ 67 (81)
.|.+|...-... +++ .|...|+..|+..-+.. +...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887644322 222 78888999998643332 2345999865
No 94
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.89 E-value=0.29 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=21.0
Q ss_pred cccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 24 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 24 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
...|.+|...|.-- ---.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 46899999877432 112799999999964
No 95
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=81.57 E-value=1 Score=25.90 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=27.6
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
-+.|..|...+.......=|..||..|..+.+. ..|..|+..+...
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 132 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCCSS
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccCCC
Confidence 366666666554432223456678888765443 4587887777543
No 96
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.24 E-value=0.3 Score=25.24 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=20.3
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
+...|.+|...|.-- ---.||.+||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 345799998876532 122788888888864
No 97
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=80.00 E-value=0.36 Score=24.96 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=21.5
Q ss_pred cccCccCccCccCc----eecCCCChhHHHHHHH
Q psy10800 24 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRT 53 (81)
Q Consensus 24 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~ 53 (81)
...|.+|...|.-- --..||.+||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45799999877522 2237999999999653
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=79.54 E-value=0.37 Score=31.18 Aligned_cols=46 Identities=20% Similarity=0.563 Sum_probs=0.0
Q ss_pred cccCccCccCccCc----eecCCCChhHHHHHHHHHhh------CCCCCCCCCcCc
Q psy10800 24 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYET------RQRKCPKCNAAF 69 (81)
Q Consensus 24 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~------~~~~CP~Cr~~~ 69 (81)
...|..|...|.-. --..||++||..|....+.. ..+.|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 46799999877522 22379999999998654321 124476665443
No 99
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=79.20 E-value=2.1 Score=22.99 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=34.3
Q ss_pred CcccCccCccCccC---ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 23 ETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 23 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
+-+.|..|...+.. .....=|..||..|..+.+.. ...|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 35888899888852 344556788999998876652 1268889888764
No 100
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=79.14 E-value=0.93 Score=23.29 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=32.0
Q ss_pred cccCccCccCccCc-eecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
-+.|..|...+... ....=|..||..|..+. ....|..|...+...
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCSS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCccccC
Confidence 47888888877543 33345778899987542 235699999988744
No 101
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.89 E-value=0.87 Score=21.72 Aligned_cols=44 Identities=20% Similarity=0.589 Sum_probs=29.3
Q ss_pred CCcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCCc
Q psy10800 22 KETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCNA 67 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~ 67 (81)
.....|.+|... ..+++ .|...|+..|+..-+.. ....||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999873 23333 78888999999754332 2346999965
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.85 E-value=0.44 Score=28.43 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=21.3
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
+...|.+|...|.-- ---.||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 457899998877522 122799999998854
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.86 E-value=2.6 Score=23.36 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=28.7
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHH----------hhCCCCCCCCCc
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRY----------ETRQRKCPKCNA 67 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~----------~~~~~~CP~Cr~ 67 (81)
+..|.+|.+--.-..--.|-..||..|+.+.+ ......|+.|+.
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45699997532211112788999999998752 124467999954
No 104
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=76.42 E-value=0.53 Score=25.82 Aligned_cols=41 Identities=24% Similarity=0.557 Sum_probs=24.9
Q ss_pred cccCccCccCccCc----eecCCCChhHHHHHHHHHhhCCCCCCCC
Q psy10800 24 TLTCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKC 65 (81)
Q Consensus 24 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~~CP~C 65 (81)
...|..|...|.-. ---.||.+||..|...... ..+.|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHH
Confidence 46899999877532 2238999999999654332 23445555
No 105
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.17 E-value=0.72 Score=27.73 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=21.6
Q ss_pred CcccCccCccCccCc----eecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~ 52 (81)
+...|.+|...|.-- ---.||.+||..|..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 356899998877532 223799999999864
No 106
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.14 E-value=5.3 Score=19.79 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=28.4
Q ss_pred CcccCccCccCcc--Cceec--CCCChhHHHHHHHHHh----hCCCCCCCCCcCcC
Q psy10800 23 ETLTCPSCKVKRK--DAVLT--KCFHVFCWDCLRTRYE----TRQRKCPKCNAAFG 70 (81)
Q Consensus 23 ~~~~C~iC~~~~~--~~~~~--~CgH~fc~~Ci~~~~~----~~~~~CP~Cr~~~~ 70 (81)
+...| +|..... ..++- .|...|+..|+.-... .....||.|+....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 35566 8887663 22222 6777888888841111 13467999987643
No 107
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=76.14 E-value=1 Score=23.93 Aligned_cols=12 Identities=42% Similarity=1.149 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhh
Q psy10800 46 FCWDCLRTRYET 57 (81)
Q Consensus 46 fc~~Ci~~~~~~ 57 (81)
||..|+.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999974
No 108
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.02 E-value=1 Score=23.87 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhh
Q psy10800 46 FCWDCLRTRYET 57 (81)
Q Consensus 46 fc~~Ci~~~~~~ 57 (81)
||..|+.+|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999974
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=75.57 E-value=0.23 Score=31.45 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCcccCccCccCccCceec----CCCC--hhHHHHHHHHHhhCCCCCCCCCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLT----KCFH--VFCWDCLRTRYETRQRKCPKCNAA 68 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~----~CgH--~fc~~Ci~~~~~~~~~~CP~Cr~~ 68 (81)
...-.||+|.....-.++. .=|+ .+|.-|-.+|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 4468999999877655443 2343 448888777655 33679999875
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.43 E-value=4.9 Score=21.34 Aligned_cols=45 Identities=18% Similarity=0.479 Sum_probs=26.3
Q ss_pred CCcccCccCccCc-------cCceec--CCCChhHHHHHH------HHHhhCCCCCCCCC
Q psy10800 22 KETLTCPSCKVKR-------KDAVLT--KCFHVFCWDCLR------TRYETRQRKCPKCN 66 (81)
Q Consensus 22 ~~~~~C~iC~~~~-------~~~~~~--~CgH~fc~~Ci~------~~~~~~~~~CP~Cr 66 (81)
...-.|.+|+..- .+.++. .|+..|+..|+. ..+......||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4556788887532 112222 788889889984 12333445566663
No 111
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=74.11 E-value=0.88 Score=26.34 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=32.8
Q ss_pred cccCccCccCccC---ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 24 TLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 24 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
-+.|..|...+.. .....=|..||..|..+.+.. ...|..|...+..
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred CcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 4788888887763 444455788899998876552 1258888887764
No 112
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=71.23 E-value=3.5 Score=23.77 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=25.5
Q ss_pred CcccCccCccCccCc-eecCCCChhHHHHHHHHHhh
Q psy10800 23 ETLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYET 57 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~ 57 (81)
+-+.|..|...+... ....=|..||..|..+.+..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 358888898877654 33345778999999988764
No 113
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.88 E-value=1.4 Score=23.66 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=19.1
Q ss_pred cCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 35 KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 35 ~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
..+.-..||+.|. . -+. ....||.|+.....
T Consensus 66 ~p~~C~~CG~~F~----~-~~~-kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 66 KPAQCRKCGFVFK----A-EIN-IPSRCPKCKSEWIE 96 (105)
T ss_dssp CCCBBTTTCCBCC----C-CSS-CCSSCSSSCCCCBC
T ss_pred ECcChhhCcCeec----c-cCC-CCCCCcCCCCCccC
Confidence 3445668999981 1 111 33679999887544
No 114
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.56 E-value=3.3 Score=19.66 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=5.9
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
..|..|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1wyh_A 6 SGCSACGETVM 16 (72)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCccCCCccc
Confidence 35555555554
No 115
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.78 E-value=1.7 Score=21.93 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=19.8
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|+.|.+.+...++..-+..|+..| ..|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 345666766665444444444443332 345566655543
No 116
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=68.54 E-value=2.5 Score=19.80 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=17.7
Q ss_pred ccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 25 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
..|+.|.+.+...++..-|..|+..| ..|..|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH---------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT---------CBCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCc---------CEECCCCCCCC
Confidence 35666665555444444444333322 33555655554
No 117
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.15 E-value=1.9 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCcccCccCccCccCceecCC-CChhHHHHHHHHH
Q psy10800 22 KETLTCPSCKVKRKDAVLTKC-FHVFCWDCLRTRY 55 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~C-gH~fc~~Ci~~~~ 55 (81)
++...|-||.+.- .-.-+.| |-.||..|+.+.-
T Consensus 6 ee~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 4567899999862 2234578 7899999988755
No 118
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.09 E-value=0.83 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=25.6
Q ss_pred cCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeecC
Q psy10800 21 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYLG 80 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 80 (81)
+-+.+.||+|...+.-.. . .+.-.|+.|+..+...+-.++.+.
T Consensus 5 LL~iL~CP~ck~~L~~~~--~---------------~~~LiC~~cg~~YPI~dGIPvmL~ 47 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ--D---------------KQELWSRQAKLAYPIKDGIPYMLE 47 (68)
T ss_dssp SSCCCBCSSSCCBCEEET--T---------------TTEEEETTTTEEEEEETTEECCCT
T ss_pred HhhheECCCCCCcCeEeC--C---------------CCEEEcCCCCcEecCCCCeeeeCh
Confidence 456789999997554210 0 122347777777766666655543
No 119
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.03 E-value=2.9 Score=19.81 Aligned_cols=31 Identities=16% Similarity=0.601 Sum_probs=14.5
Q ss_pred ccCccCccCccCc-eecCCCChhHHHHHHHHH
Q psy10800 25 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRY 55 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~ 55 (81)
+.|..|...+... ....=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 4555555544332 222334555666655433
No 120
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.84 E-value=1.9 Score=20.56 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=7.9
Q ss_pred CCCCCCCCcCcCc
Q psy10800 59 QRKCPKCNAAFGA 71 (81)
Q Consensus 59 ~~~CP~Cr~~~~~ 71 (81)
...||.|+..+..
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 3457777666654
No 121
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=67.41 E-value=2.7 Score=21.84 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=18.4
Q ss_pred chHHHHHHHHhcCCcccCccCcc
Q psy10800 10 LDEVMLEEIREYKETLTCPSCKV 32 (81)
Q Consensus 10 ~~~~~~~~~~~~~~~~~C~iC~~ 32 (81)
.+.........+...+.||+|+.
T Consensus 9 ~~~~~e~r~~~L~~~LRCpvCqn 31 (90)
T 2kw0_A 9 KDEAQEQQFRQLTEELRCPKCQN 31 (90)
T ss_dssp SSHHHHHHHHHHHHSSBCSCTTS
T ss_pred CCHHHHHHHHHHHHcCcCCCCCC
Confidence 45566667788889999999986
No 122
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.35 E-value=5.9 Score=18.62 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=20.9
Q ss_pred cccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 24 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 24 ~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
-+.|..|...+... ....=|..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 36777777766532 3334467778888776655
No 123
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.26 E-value=6.2 Score=25.82 Aligned_cols=45 Identities=16% Similarity=0.496 Sum_probs=29.2
Q ss_pred cccCccCccCccCcee--cCCCChhHHHHHHHHHhh---------CCCCCCCCCcC
Q psy10800 24 TLTCPSCKVKRKDAVL--TKCFHVFCWDCLRTRYET---------RQRKCPKCNAA 68 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~--~~CgH~fc~~Ci~~~~~~---------~~~~CP~Cr~~ 68 (81)
+..|.+|.+--.--.- -.|...||..||.+.+.. ....|-+|.-.
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4677777753221111 178899999999988843 34678888543
No 124
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.03 E-value=8.4 Score=18.17 Aligned_cols=32 Identities=16% Similarity=0.532 Sum_probs=17.6
Q ss_pred ccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 25 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 5666666655432 3334455666666665554
No 125
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.87 E-value=4 Score=19.70 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.8
Q ss_pred cCccCccCccCceecCCCChh
Q psy10800 26 TCPSCKVKRKDAVLTKCFHVF 46 (81)
Q Consensus 26 ~C~iC~~~~~~~~~~~CgH~f 46 (81)
.|+.|.+.+...++..-+..|
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~w 27 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHY 27 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCB
T ss_pred CcccCCCEecCeeEEeCCCCC
Confidence 455565555443333334333
No 126
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.67 E-value=3.6 Score=20.19 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=21.9
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
...|+.|.+.+...++..-|..|+..| ..|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 346777777666544444444443332 4466676666543
No 127
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.54 E-value=3.9 Score=19.33 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=14.5
Q ss_pred ccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 25 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4555555544432 1122344555555554443
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=66.09 E-value=4.6 Score=20.20 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=24.2
Q ss_pred CcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
....|..|.+.+...++..-+..|+..| ..|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCC
Confidence 3457888887766554444555444433 4577777766543
No 129
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.08 E-value=2.9 Score=20.47 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=21.8
Q ss_pred ccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 25 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
..|+.|.+.+...++..-+..|+..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC---------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT---------SSCSSSCCCCCSS
T ss_pred CcCccccCEeccceEEECCceeCccC---------CccccCCCCCCCC
Confidence 36777777666444444444444333 4466777766543
No 130
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=64.43 E-value=1.1 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=24.7
Q ss_pred hcCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
.+-+-+.||+|...+.-.. ..+.-.|+.|+..+...+-.++.+
T Consensus 6 ~LLeiL~CP~ck~~L~~~~-----------------~~g~LvC~~c~~~YPI~dGIPvmL 48 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRYLE-----------------SEQLLVNERLNLAYRIDDGIPVLL 48 (67)
T ss_dssp GGTCCCBCTTTCCBCEEET-----------------TTTEEEETTTTEEEEEETTEECCC
T ss_pred HHHHHhCCCCCCCcCeEeC-----------------CCCEEEcCCCCccccCCCCEeeeC
Confidence 3556789999987554210 012234777776666555555544
No 131
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.42 E-value=5.6 Score=19.39 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=19.2
Q ss_pred ccCccCccCcc--CceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCc
Q psy10800 25 LTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGA 71 (81)
Q Consensus 25 ~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|+.|.+.+. +.++..-+..|+..| ..|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEECcccccccc---------CchhhCCCccCC
Confidence 46666666555 333334444443332 346666666544
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.41 E-value=0.76 Score=23.67 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=33.9
Q ss_pred hcCCcccCccCccCcc--C-ceec--CCCChhHHHHHHHHHh-hCCCCCCCCCcCcCcCCc
Q psy10800 20 EYKETLTCPSCKVKRK--D-AVLT--KCFHVFCWDCLRTRYE-TRQRKCPKCNAAFGANDY 74 (81)
Q Consensus 20 ~~~~~~~C~iC~~~~~--~-~~~~--~CgH~fc~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~ 74 (81)
...+...|.||...-. . .+++ .|.-.|+..|+..-.. .....||.|........+
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 3456789999997541 1 2333 6777888899863221 134569999766554443
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.26 E-value=1 Score=26.38 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred cccCccCccCccCce----ec---CCCChhHHHHHHH------HHh----hCCCCCCCCCcCcC
Q psy10800 24 TLTCPSCKVKRKDAV----LT---KCFHVFCWDCLRT------RYE----TRQRKCPKCNAAFG 70 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~----~~---~CgH~fc~~Ci~~------~~~----~~~~~CP~Cr~~~~ 70 (81)
+..||||...+.+.- .+ .|...|+..|+.- .+. .....||.|+....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 356999998876541 33 5676777777621 111 01467999987543
No 134
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.69 E-value=0.27 Score=23.70 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=29.8
Q ss_pred CCcccCccCccCcc---Cceec--CCCChhHHHHHHHHH------hhCCCCCCCCCcCc
Q psy10800 22 KETLTCPSCKVKRK---DAVLT--KCFHVFCWDCLRTRY------ETRQRKCPKCNAAF 69 (81)
Q Consensus 22 ~~~~~C~iC~~~~~---~~~~~--~CgH~fc~~Ci~~~~------~~~~~~CP~Cr~~~ 69 (81)
.+...|.+|..... +.+++ .|...|+..|+..-+ ......|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34678999987532 23333 788888888876422 22346688886543
No 135
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.65 E-value=3.7 Score=19.57 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=5.8
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
..|..|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4l_A 6 SGCAGCTNPIS 16 (72)
T ss_dssp CSBTTTTBCCC
T ss_pred CCCcCCCcccc
Confidence 34555555544
No 136
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=62.47 E-value=0.99 Score=23.64 Aligned_cols=44 Identities=20% Similarity=0.525 Sum_probs=27.2
Q ss_pred CcccCccCccCccCceec---CCCChhHHHHHHHHHhh--CCCCCCCCCc
Q psy10800 23 ETLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYET--RQRKCPKCNA 67 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~~~~--~~~~CP~Cr~ 67 (81)
+.+.| ||........++ .|...|+..|+..-... ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34678 898765544334 67778888887532221 2356999964
No 137
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.31 E-value=4 Score=20.03 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=28.6
Q ss_pred CCcccCccCccCccCceec--C--CC-ChhHHHHHHHHHhh---CCCCCCCCCcCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLT--K--CF-HVFCWDCLRTRYET---RQRKCPKCNAAFG 70 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~--Cg-H~fc~~Ci~~~~~~---~~~~CP~Cr~~~~ 70 (81)
.+...| +|.......++. . |. ..|+..|+. +.. ....||.|+....
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 346778 898765444433 3 55 578888886 332 2356999976543
No 138
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=61.39 E-value=0.18 Score=25.50 Aligned_cols=31 Identities=26% Similarity=0.617 Sum_probs=21.0
Q ss_pred cccCcc--CccCccC-----ceec------CCCChhHHHHHHHH
Q psy10800 24 TLTCPS--CKVKRKD-----AVLT------KCFHVFCWDCLRTR 54 (81)
Q Consensus 24 ~~~C~i--C~~~~~~-----~~~~------~CgH~fc~~Ci~~~ 54 (81)
...||- |...+.. .+.= .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 567887 7765431 1333 58999999998764
No 139
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.23 E-value=2.9 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=19.9
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCc
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~ 69 (81)
...|..|.+.+...++..-+..|+..| +.|-.|+..+
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCC
Confidence 457777777665544444444443333 3355555554
No 140
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=59.84 E-value=5.9 Score=21.32 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=15.9
Q ss_pred cccCccCccCccCc-eecCCCChhHHHH
Q psy10800 24 TLTCPSCKVKRKDA-VLTKCFHVFCWDC 50 (81)
Q Consensus 24 ~~~C~iC~~~~~~~-~~~~CgH~fc~~C 50 (81)
...|..|.+.+... ++..-+..|+..|
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C 88 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC 88 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc
Confidence 45788888777655 3444454454444
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=59.82 E-value=4.9 Score=19.35 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=28.8
Q ss_pred CcccCccCccCccC-ceecCCCChhHH-HHHHHHHhhCCCCCCCCCcC
Q psy10800 23 ETLTCPSCKVKRKD-AVLTKCFHVFCW-DCLRTRYETRQRKCPKCNAA 68 (81)
Q Consensus 23 ~~~~C~iC~~~~~~-~~~~~CgH~fc~-~Ci~~~~~~~~~~CP~Cr~~ 68 (81)
+-+.|..|...+.. .....=|..||. .|..+.+. ..|..|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCc
Confidence 35788899887765 344455778898 58876554 457777543
No 142
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=59.68 E-value=3.8 Score=20.97 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=18.3
Q ss_pred chHHHHHHHHhcCCcccCccCcc
Q psy10800 10 LDEVMLEEIREYKETLTCPSCKV 32 (81)
Q Consensus 10 ~~~~~~~~~~~~~~~~~C~iC~~ 32 (81)
.+.........+...+.||+|..
T Consensus 12 ~~~~~e~r~~~l~~~LRCp~Cqn 34 (84)
T 2hl7_A 12 ASDAERERFRNLTQELRCPKCQN 34 (84)
T ss_dssp SSHHHHHHHHHHHHHEECTTSSS
T ss_pred CCHHHHHHHHHHHHcCcCCCCCC
Confidence 45566667788888999999986
No 143
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.47 E-value=2.5 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=11.9
Q ss_pred ccCccCccCccCc-eecC-CCChhHHHHHHH
Q psy10800 25 LTCPSCKVKRKDA-VLTK-CFHVFCWDCLRT 53 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~-CgH~fc~~Ci~~ 53 (81)
+.|..|...+... .... =|..||..|..+
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHH
Confidence 4455554444322 1111 234455555443
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=59.39 E-value=0.13 Score=27.30 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=24.2
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
+..||.|...+.-. =++.+|..|-..+.. ...||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc--cccCcchhhHHH
Confidence 48999999766421 123336666443222 245888887764
No 145
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.00 E-value=11 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=5.8
Q ss_pred CChhHHHHHHHHH
Q psy10800 43 FHVFCWDCLRTRY 55 (81)
Q Consensus 43 gH~fc~~Ci~~~~ 55 (81)
|..+|..|..+.+
T Consensus 63 ~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 63 ATLYCGKCHNEVV 75 (81)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CEEECHHHHHHHh
Confidence 3444444444433
No 146
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.85 E-value=4.1 Score=19.65 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=6.6
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
..|+.|.+.+.
T Consensus 10 ~~C~~C~~~I~ 20 (76)
T 2cu8_A 10 SKCPKCDKTVY 20 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCCcCCCCEeE
Confidence 45666666554
No 147
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.36 E-value=5.7 Score=19.26 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=4.5
Q ss_pred cCccCccCcc
Q psy10800 26 TCPSCKVKRK 35 (81)
Q Consensus 26 ~C~iC~~~~~ 35 (81)
.|+.|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 2cuq_A 17 RCARCSKTLT 26 (80)
T ss_dssp CCTTTCCCCC
T ss_pred cCCCCCCEec
Confidence 4444444443
No 148
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.20 E-value=1.3 Score=21.10 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=28.0
Q ss_pred CcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCCcCc
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCNAAF 69 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~~ 69 (81)
....|.+|...- .+++ .|...|+..|+..-+.. ....||.|....
T Consensus 8 ~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456799998632 2222 67778888887643332 235699997643
No 149
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=57.77 E-value=12 Score=19.87 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=23.9
Q ss_pred cccCccCccCcc--CceecCCCChhHHHHHHHHHhh
Q psy10800 24 TLTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYET 57 (81)
Q Consensus 24 ~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~ 57 (81)
-+.|..|...+. ......=|..||..|..+.+..
T Consensus 36 CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 477888888773 2344455778898888877764
No 150
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.74 E-value=3.8 Score=19.79 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=18.8
Q ss_pred ccCccCccCccC----ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 25 LTCPSCKVKRKD----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 25 ~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
..|+.|.+.+.. .++..-+..|+..| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCC
Confidence 467777776663 33333444443333 33555655554
No 151
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.59 E-value=3.8 Score=21.24 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=27.9
Q ss_pred CCcccCccCccCccCceec--C--CC-ChhHHHHHHHHHhh---CCCCCCCCCcCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLT--K--CF-HVFCWDCLRTRYET---RQRKCPKCNAAFG 70 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~--Cg-H~fc~~Ci~~~~~~---~~~~CP~Cr~~~~ 70 (81)
.+...| +|.......++. . |. ..|+..|+. +.. ....||.|+....
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345778 998865443322 3 54 568888875 322 2356999976543
No 152
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=57.45 E-value=3.4 Score=22.13 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=19.8
Q ss_pred cccCccCccCccCceecCCCChhHH
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCW 48 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~ 48 (81)
...|..|...-...+-|.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999876555678899999984
No 153
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.31 E-value=1.7 Score=21.47 Aligned_cols=45 Identities=22% Similarity=0.594 Sum_probs=28.3
Q ss_pred cccCccCccCccCceec---CCCChhHHHHHHHH------H--hhCCCCCCCCCcCc
Q psy10800 24 TLTCPSCKVKRKDAVLT---KCFHVFCWDCLRTR------Y--ETRQRKCPKCNAAF 69 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~------~--~~~~~~CP~Cr~~~ 69 (81)
.+.| +|.........+ .|...|+..|+.-. + ......||.|+...
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4667 898876543233 67788888998311 1 12457799997644
No 154
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.48 E-value=5.4 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=4.7
Q ss_pred cCccCccCcc
Q psy10800 26 TCPSCKVKRK 35 (81)
Q Consensus 26 ~C~iC~~~~~ 35 (81)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4k_A 7 GCQECKKTIM 16 (72)
T ss_dssp CBSSSCCCCC
T ss_pred CCccCCCccc
Confidence 4445544443
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.30 E-value=5.8 Score=22.78 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=27.9
Q ss_pred cccCccCccCccCceec----CCCChhHHHHHHHHHhhC---------CCCCCCCCc
Q psy10800 24 TLTCPSCKVKRKDAVLT----KCFHVFCWDCLRTRYETR---------QRKCPKCNA 67 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~----~CgH~fc~~Ci~~~~~~~---------~~~CP~Cr~ 67 (81)
+..|.+|.+-- .++. +|...||..||...+... ...|-+|.-
T Consensus 79 ~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 46777877522 1111 588899999999887642 356888854
No 156
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.95 E-value=14 Score=19.32 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.5
Q ss_pred CcccCccCccCccC---ceecCCCChhHHHHHHHHHhhC
Q psy10800 23 ETLTCPSCKVKRKD---AVLTKCFHVFCWDCLRTRYETR 58 (81)
Q Consensus 23 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~ 58 (81)
+-+.|..|...+.. .....=|..||..|..+.+...
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 35889999888863 3444457889999998887754
No 157
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=54.54 E-value=2.3 Score=23.62 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=20.5
Q ss_pred CcccCccCccCcc---Cc--eecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRK---DA--VLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~---~~--~~~~CgH~fc~~Ci~ 52 (81)
....|.+|...|. +. +-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4678999998773 22 334788888877743
No 158
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=54.11 E-value=1.6 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=27.9
Q ss_pred cccCccCccCccCceecCCCChhHHHHHHHHHhh---CCCCCCCCCcCc
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET---RQRKCPKCNAAF 69 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~~ 69 (81)
+..|.+|...-.--.--.|...|+..|+..-+.. +...||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999854221111167778888887543332 235699998654
No 159
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=53.70 E-value=1.2 Score=22.04 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=23.8
Q ss_pred cCCcccCccCccCccCceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcCCceeeec
Q psy10800 21 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79 (81)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 79 (81)
+-+.+.||+|...+.-.. ..+.-.|+.|+..+...+-.++.+
T Consensus 5 LL~iL~CP~ck~~L~~~~-----------------~~~~LiC~~cg~~YPI~dGIPvmL 46 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR-----------------AQAELVCNADRLAFPVRDGVPIML 46 (70)
T ss_dssp CCCCCBCTTTCCBEEEET-----------------TTTEEEETTTTEEEEEETTEECCC
T ss_pred HhhheECCCCCCcCEEeC-----------------CCCEEEcCCCCceecCCCCeeeeC
Confidence 456789999987554210 012234777776666555555443
No 160
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.55 E-value=3.1 Score=19.17 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=11.7
Q ss_pred CcccCccCccCccCce
Q psy10800 23 ETLTCPSCKVKRKDAV 38 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~ 38 (81)
..+.|++|...|....
T Consensus 17 ~~~~C~~C~k~f~~~~ 32 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRS 32 (73)
T ss_dssp SEEECSSSCCEEECCC
T ss_pred CCeeCCcccchhCCHH
Confidence 3578999988776553
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.33 E-value=3.4 Score=20.40 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=6.9
Q ss_pred cccCccCccCcc
Q psy10800 24 TLTCPSCKVKRK 35 (81)
Q Consensus 24 ~~~C~iC~~~~~ 35 (81)
...|+.|.+.+.
T Consensus 15 ~~~C~~C~~~I~ 26 (80)
T 2dj7_A 15 PSHCAGCKEEIK 26 (80)
T ss_dssp CSCCTTTCCCCS
T ss_pred CCCCcCcCCeeC
Confidence 345666666554
No 162
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.56 E-value=7.3 Score=18.98 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=21.4
Q ss_pred ccCccCccCcc--CceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 25 LTCPSCKVKRK--DAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 25 ~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
..|..|.+.+. ..++..-+..|+..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC---------FRCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT---------SBCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEEeCCccccccC---------CeecCCCCccCCC
Confidence 46888887776 333333344443333 3466777766543
No 163
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.52 E-value=13 Score=17.90 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=17.0
Q ss_pred ccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 25 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHHcC
Confidence 5666666655432 2223455666666655443
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.50 E-value=10 Score=18.90 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=21.0
Q ss_pred cccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 24 TLTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 24 ~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
-+.|..|...+... ....=|..||..|..+.+.
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 46777777666543 3334466788888776554
No 165
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=51.03 E-value=4 Score=16.15 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=8.4
Q ss_pred cccCccCccCcc
Q psy10800 24 TLTCPSCKVKRK 35 (81)
Q Consensus 24 ~~~C~iC~~~~~ 35 (81)
...||+|+..+-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 467899887543
No 166
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=49.61 E-value=8.2 Score=18.54 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=19.3
Q ss_pred CCcccCccCccCccCc-eec----CCCChhHHHHH
Q psy10800 22 KETLTCPSCKVKRKDA-VLT----KCFHVFCWDCL 51 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~-~~~----~CgH~fc~~Ci 51 (81)
.....|++|...+... ..+ .|...|+..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3457899999876533 122 57777888887
No 167
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=49.16 E-value=6 Score=19.00 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=22.0
Q ss_pred ccCccCccCccC-----ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 25 LTCPSCKVKRKD-----AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 25 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
..|+.|.+.+.. .++..-+..|+..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc---------CEehhcCCCCCCC
Confidence 467778776663 33333444444333 4577777776543
No 168
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=47.71 E-value=5.2 Score=18.69 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=5.8
Q ss_pred cCccCccCcc
Q psy10800 26 TCPSCKVKRK 35 (81)
Q Consensus 26 ~C~iC~~~~~ 35 (81)
.|+.|.+.+.
T Consensus 4 ~C~~C~~~I~ 13 (65)
T 2iyb_E 4 VCQGCHNAID 13 (65)
T ss_dssp ECTTTSSEEC
T ss_pred CCcCCCCeec
Confidence 4666666555
No 169
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=47.70 E-value=10 Score=19.69 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.1
Q ss_pred cccCccCccCccC-ceecC--CCChhHHH
Q psy10800 24 TLTCPSCKVKRKD-AVLTK--CFHVFCWD 49 (81)
Q Consensus 24 ~~~C~iC~~~~~~-~~~~~--CgH~fc~~ 49 (81)
...|..|...-.+ .+-|. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4589999854444 46777 99999844
No 170
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.50 E-value=4.6 Score=19.06 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=28.4
Q ss_pred CCcccCccCccCccC-ceec---CCCChhHHHHHHHHHh----hCCCCCCCCCcC
Q psy10800 22 KETLTCPSCKVKRKD-AVLT---KCFHVFCWDCLRTRYE----TRQRKCPKCNAA 68 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~-~~~~---~CgH~fc~~Ci~~~~~----~~~~~CP~Cr~~ 68 (81)
.+...|++|...+.+ ...+ .|...|+..|+.-... .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999987642 2223 5667777777742111 133568888654
No 171
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=47.28 E-value=0.68 Score=22.41 Aligned_cols=45 Identities=20% Similarity=0.506 Sum_probs=26.1
Q ss_pred CcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCCcCc
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCNAAF 69 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~~ 69 (81)
.+..|.||...- .+++ .|...|+..|+..-+.. ....||.|...-
T Consensus 7 ~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 456788888632 2222 67777777777542221 234588886543
No 172
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=47.12 E-value=1.4 Score=25.96 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=28.7
Q ss_pred CcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCCcCc
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCNAAF 69 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~~ 69 (81)
....|.+|...-. +++ .|...|+..|+..-+.. +...||.|+...
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3567999985321 222 68888888887543332 235699998653
No 173
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.83 E-value=5.3 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.508 Sum_probs=21.1
Q ss_pred CcccCccCccCcc---Cc--eecCCCChhHHHHH
Q psy10800 23 ETLTCPSCKVKRK---DA--VLTKCFHVFCWDCL 51 (81)
Q Consensus 23 ~~~~C~iC~~~~~---~~--~~~~CgH~fc~~Ci 51 (81)
....|.+|...|. +. +-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4689999998652 22 44478888888885
No 174
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=46.41 E-value=1.5 Score=21.53 Aligned_cols=42 Identities=24% Similarity=0.604 Sum_probs=24.5
Q ss_pred cCccCccCccCc-eec--CCCChhHHHHHHHHHhh---C-CCCCCCCCc
Q psy10800 26 TCPSCKVKRKDA-VLT--KCFHVFCWDCLRTRYET---R-QRKCPKCNA 67 (81)
Q Consensus 26 ~C~iC~~~~~~~-~~~--~CgH~fc~~Ci~~~~~~---~-~~~CP~Cr~ 67 (81)
.|.+|...-... +++ .|...|+..|+..-+.. + ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455666532222 333 67788888888643332 2 346888864
No 175
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.88 E-value=11 Score=19.38 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=19.5
Q ss_pred cccCccCccCcc--CceecCCCChhHHH
Q psy10800 24 TLTCPSCKVKRK--DAVLTKCFHVFCWD 49 (81)
Q Consensus 24 ~~~C~iC~~~~~--~~~~~~CgH~fc~~ 49 (81)
...|..|...+. .+..-.||..||..
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred CccchhhCCeecccCCeEcCCCCEeccc
Confidence 468999987544 36666899999984
No 176
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=45.07 E-value=9.4 Score=27.00 Aligned_cols=33 Identities=27% Similarity=0.660 Sum_probs=24.7
Q ss_pred ccCccCccCccC----------ceecCCCChhHHHHHHHHHhh
Q psy10800 25 LTCPSCKVKRKD----------AVLTKCFHVFCWDCLRTRYET 57 (81)
Q Consensus 25 ~~C~iC~~~~~~----------~~~~~CgH~fc~~Ci~~~~~~ 57 (81)
-.||+|.-...+ -..++||.+||..|...+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 468888754432 267799999999999987764
No 177
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.27 E-value=4.8 Score=20.75 Aligned_cols=45 Identities=18% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCCcC
Q psy10800 22 KETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCNAA 68 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~ 68 (81)
.....|.+|...- .+++ .|...|+..|+.+-+.. ....||.|...
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3467899998642 2222 67778888888654432 23569999754
No 178
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.25 E-value=6.4 Score=20.65 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=7.4
Q ss_pred CCCCCCCcCcC
Q psy10800 60 RKCPKCNAAFG 70 (81)
Q Consensus 60 ~~CP~Cr~~~~ 70 (81)
..||+|+..+.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 34888877655
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=43.82 E-value=7.3 Score=15.68 Aligned_cols=8 Identities=38% Similarity=1.356 Sum_probs=3.8
Q ss_pred ccCccCcc
Q psy10800 25 LTCPSCKV 32 (81)
Q Consensus 25 ~~C~iC~~ 32 (81)
+.||+|..
T Consensus 4 ~~CpvCk~ 11 (28)
T 2jvx_A 4 FCCPKCQY 11 (28)
T ss_dssp EECTTSSC
T ss_pred ccCccccc
Confidence 34555544
No 180
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=42.54 E-value=5.6 Score=22.57 Aligned_cols=45 Identities=20% Similarity=0.578 Sum_probs=27.6
Q ss_pred CCcccCccCccCccC-ceec---CCCChhHHHHHHHHHh----hCCCCCCCCCc
Q psy10800 22 KETLTCPSCKVKRKD-AVLT---KCFHVFCWDCLRTRYE----TRQRKCPKCNA 67 (81)
Q Consensus 22 ~~~~~C~iC~~~~~~-~~~~---~CgH~fc~~Ci~~~~~----~~~~~CP~Cr~ 67 (81)
.+...| +|...... ...+ .|...|+..|+.-... .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456788 99876532 2122 6778889999842111 23466999975
No 181
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=41.70 E-value=3.6 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=21.4
Q ss_pred CcccCccCccCccC-cee--cCCCChhHHHHHHHHH
Q psy10800 23 ETLTCPSCKVKRKD-AVL--TKCFHVFCWDCLRTRY 55 (81)
Q Consensus 23 ~~~~C~iC~~~~~~-~~~--~~CgH~fc~~Ci~~~~ 55 (81)
++..|.+|...-.. .++ ..|+..|+..|+...+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 45689999765432 212 2788888888886543
No 182
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.66 E-value=23 Score=17.22 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=28.5
Q ss_pred CCcccCccCccCc---cCceec--CCCChhHHHHHHHHHh-hCCCCCCCCCc
Q psy10800 22 KETLTCPSCKVKR---KDAVLT--KCFHVFCWDCLRTRYE-TRQRKCPKCNA 67 (81)
Q Consensus 22 ~~~~~C~iC~~~~---~~~~~~--~CgH~fc~~Ci~~~~~-~~~~~CP~Cr~ 67 (81)
.+...|.||...- .+.+++ .|.-.|+..|+..-.. .+...||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4467899998753 223433 7888888898863211 12345877754
No 183
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.53 E-value=12 Score=18.33 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=21.1
Q ss_pred cccCccCccCccC-ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcCcC
Q psy10800 24 TLTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72 (81)
Q Consensus 24 ~~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~~~ 72 (81)
...|..|.+.+.. ..+..-+..|+..| ..|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~C---------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSC---------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTT---------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCc---------CEEcCCCCCcCCC
Confidence 4578888886643 23333343333333 3466666665543
No 184
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=40.86 E-value=8.8 Score=27.30 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhCC-------CCCCCCCcCc
Q psy10800 47 CWDCLRTRYETRQ-------RKCPKCNAAF 69 (81)
Q Consensus 47 c~~Ci~~~~~~~~-------~~CP~Cr~~~ 69 (81)
|..|..+|-.... ..||.|.-.+
T Consensus 159 C~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 159 CDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred ChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 8999998876432 3599996543
No 185
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=40.70 E-value=13 Score=13.06 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=7.1
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 456666665543
No 186
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=40.57 E-value=4.1 Score=23.75 Aligned_cols=44 Identities=18% Similarity=0.485 Sum_probs=25.7
Q ss_pred ccCccCccCccCceecCCCChhHHHHHHHHHhh---CCCCCCCCCcC
Q psy10800 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYET---RQRKCPKCNAA 68 (81)
Q Consensus 25 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~~CP~Cr~~ 68 (81)
-.|.+|...-.--.--.|...|+..|+..-+.. +...||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 468888754221111257777888887543332 23569999764
No 187
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=39.45 E-value=9 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.639 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhCC-------CCCCCCCcCc
Q psy10800 47 CWDCLRTRYETRQ-------RKCPKCNAAF 69 (81)
Q Consensus 47 c~~Ci~~~~~~~~-------~~CP~Cr~~~ 69 (81)
|..|..+|-.... ..||.|.=.+
T Consensus 70 C~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 70 CPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred ChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 8999999876532 3599996544
No 188
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.33 E-value=16 Score=12.70 Aligned_cols=12 Identities=42% Similarity=1.209 Sum_probs=7.4
Q ss_pred CCCCCCCcCcCc
Q psy10800 60 RKCPKCNAAFGA 71 (81)
Q Consensus 60 ~~CP~Cr~~~~~ 71 (81)
..|+.|...+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 357777666643
No 189
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.16 E-value=2.1 Score=21.47 Aligned_cols=42 Identities=24% Similarity=0.597 Sum_probs=25.0
Q ss_pred cCccCccCccCc-eec--CCCChhHHHHHHHHHhh---C-CCCCCCCCc
Q psy10800 26 TCPSCKVKRKDA-VLT--KCFHVFCWDCLRTRYET---R-QRKCPKCNA 67 (81)
Q Consensus 26 ~C~iC~~~~~~~-~~~--~CgH~fc~~Ci~~~~~~---~-~~~CP~Cr~ 67 (81)
.|.+|...-... +++ .|...|+..|+..-+.. + ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 667787543222 333 67788888888643332 2 345888854
No 190
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=37.66 E-value=17 Score=12.55 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=5.1
Q ss_pred cCccCccCcc
Q psy10800 26 TCPSCKVKRK 35 (81)
Q Consensus 26 ~C~iC~~~~~ 35 (81)
.|.+|...|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4555555444
No 191
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.12 E-value=0.8 Score=21.37 Aligned_cols=42 Identities=29% Similarity=0.712 Sum_probs=23.4
Q ss_pred CcccCccCccCccCceec--CCCChhHHHHHHHHHhh---CCCCCCCCC
Q psy10800 23 ETLTCPSCKVKRKDAVLT--KCFHVFCWDCLRTRYET---RQRKCPKCN 66 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~---~~~~CP~Cr 66 (81)
....|.+|... ..+++ .|...|+..|+..-+.. ....||.|.
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45678899864 22222 67777777777543221 123466663
No 192
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.02 E-value=9.5 Score=18.20 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=5.5
Q ss_pred ccCccCccCc
Q psy10800 25 LTCPSCKVKR 34 (81)
Q Consensus 25 ~~C~iC~~~~ 34 (81)
..|+.|.+.+
T Consensus 12 ~~C~~C~~~I 21 (77)
T 1g47_A 12 ATCERCKGGF 21 (77)
T ss_dssp CBCSSSCCBC
T ss_pred CCchhcCCcc
Confidence 4556665544
No 193
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=37.00 E-value=27 Score=17.14 Aligned_cols=31 Identities=26% Similarity=0.696 Sum_probs=23.0
Q ss_pred CcccCccCccCc-cC--ceecCCCChhHHHHHHH
Q psy10800 23 ETLTCPSCKVKR-KD--AVLTKCFHVFCWDCLRT 53 (81)
Q Consensus 23 ~~~~C~iC~~~~-~~--~~~~~CgH~fc~~Ci~~ 53 (81)
....|.+|.... .. ..-+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 367899998643 22 25668999999999875
No 194
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.99 E-value=18 Score=12.66 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=7.0
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 456666665544
No 195
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.71 E-value=13 Score=13.00 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=4.6
Q ss_pred ccCccCccCc
Q psy10800 25 LTCPSCKVKR 34 (81)
Q Consensus 25 ~~C~iC~~~~ 34 (81)
+.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 3455554443
No 196
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=36.69 E-value=21 Score=13.62 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=8.3
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4677777666554
No 197
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=36.46 E-value=17 Score=16.29 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=8.1
Q ss_pred hcCCcccCccCcc
Q psy10800 20 EYKETLTCPSCKV 32 (81)
Q Consensus 20 ~~~~~~~C~iC~~ 32 (81)
.+.++..||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4455567777764
No 198
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.36 E-value=14 Score=12.97 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.4
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
+.|++|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 44555554443
No 199
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=35.80 E-value=1.8 Score=21.73 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=23.0
Q ss_pred cCccCccCccCceec---CCCChhHHHHHHHHHhh---CC-CCCCCCCc
Q psy10800 26 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYET---RQ-RKCPKCNA 67 (81)
Q Consensus 26 ~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~~~~---~~-~~CP~Cr~ 67 (81)
.|.+|...-....++ .|...|+..|+..-+.. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455555433222233 67778888887644332 12 56888864
No 200
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.76 E-value=2.4 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=22.7
Q ss_pred cCccCccCccCceec---CCCChhHHHHHHHHHhh---C-CCCCCCCCc
Q psy10800 26 TCPSCKVKRKDAVLT---KCFHVFCWDCLRTRYET---R-QRKCPKCNA 67 (81)
Q Consensus 26 ~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~~~~---~-~~~CP~Cr~ 67 (81)
.|.+|...-....++ .|...|+..|+..-+.. + ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577777532222222 67788888888754432 2 345999864
No 201
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.67 E-value=21 Score=13.42 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=8.3
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4667777666654
No 202
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.51 E-value=12 Score=17.44 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=13.2
Q ss_pred cccCccCccCccCc--eecCCCChhHHHH
Q psy10800 24 TLTCPSCKVKRKDA--VLTKCFHVFCWDC 50 (81)
Q Consensus 24 ~~~C~iC~~~~~~~--~~~~CgH~fc~~C 50 (81)
...|..|.+.+... ++..-|..|+..|
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C 39 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC 39 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC
Confidence 34677777665532 3333344444444
No 203
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=35.50 E-value=22 Score=16.93 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=10.0
Q ss_pred CCCCCCCcCcCcCCcee
Q psy10800 60 RKCPKCNAAFGANDYHR 76 (81)
Q Consensus 60 ~~CP~Cr~~~~~~~~~~ 76 (81)
..||.|+.........+
T Consensus 19 ~~CP~CG~~T~~~hPar 35 (60)
T 2apo_B 19 EICPKCGEKTVIPKPPK 35 (60)
T ss_dssp SBCSSSCSBCBCCCCCC
T ss_pred ccCcCCCCcCCCCCCCC
Confidence 34888877665544333
No 204
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=35.33 E-value=8.5 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.584 Sum_probs=18.5
Q ss_pred CcccCccCccCccCceecCCCChhHHHHHH
Q psy10800 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLR 52 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~ 52 (81)
....|++|.+.+.+. |-..|..|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 456799998877665 7778888853
No 205
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=33.38 E-value=28 Score=20.69 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=27.2
Q ss_pred cccCccCccCc-----cCceecCCC----ChhHHHHHHHH-------------HhhCC-----CCCCCCCcCcC
Q psy10800 24 TLTCPSCKVKR-----KDAVLTKCF----HVFCWDCLRTR-------------YETRQ-----RKCPKCNAAFG 70 (81)
Q Consensus 24 ~~~C~iC~~~~-----~~~~~~~Cg----H~fc~~Ci~~~-------------~~~~~-----~~CP~Cr~~~~ 70 (81)
...|+.|.+.- ......+=| ++.|..|.... +..+. ..||+|+....
T Consensus 75 ~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 75 KKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred CeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 46799997632 111222234 67899996532 22233 35999988765
No 206
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.25 E-value=6.5 Score=19.15 Aligned_cols=32 Identities=22% Similarity=0.583 Sum_probs=15.6
Q ss_pred ccCccCccCccCc-eecCCCChhHHHHHHHHHh
Q psy10800 25 LTCPSCKVKRKDA-VLTKCFHVFCWDCLRTRYE 56 (81)
Q Consensus 25 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~ 56 (81)
+.|..|...+... ....=+..||..|..+.+.
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 5556665554432 2222345566666655433
No 207
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=33.15 E-value=11 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.625 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCC-------CCCCCCCcCc
Q psy10800 47 CWDCLRTRYETRQ-------RKCPKCNAAF 69 (81)
Q Consensus 47 c~~Ci~~~~~~~~-------~~CP~Cr~~~ 69 (81)
|..|..+|-.... ..||.|.-.+
T Consensus 164 C~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 164 CEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 8999988776432 3599996543
No 208
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.33 E-value=9.1 Score=13.36 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.6
Q ss_pred cCccCccCcc
Q psy10800 26 TCPSCKVKRK 35 (81)
Q Consensus 26 ~C~iC~~~~~ 35 (81)
.|++|...|.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 4455544443
No 209
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.08 E-value=22 Score=12.53 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=6.6
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 456666655543
No 210
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.32 E-value=17 Score=12.75 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.7
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
+.|.+|...|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 45555555444
No 211
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.96 E-value=35 Score=16.33 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=22.8
Q ss_pred cccCcc--CccCccCceecC-CCChhHHHHHHHHHhhCCCCCCCC
Q psy10800 24 TLTCPS--CKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKC 65 (81)
Q Consensus 24 ~~~C~i--C~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~~CP~C 65 (81)
...|.. |...-..|+.=. |+..||.. -.+. ....|+.=
T Consensus 12 ~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~---HR~~-e~H~C~~~ 52 (63)
T 1x4v_A 12 TNKCERAGCRQREMMKLTCERCSRNFCIK---HRHP-LDHDCSGE 52 (63)
T ss_dssp CCCCCSTTCCCCCSSCCBCSSSCCBCCHH---HHST-TSSCCCST
T ss_pred CCCCCccCCCCCCccceECCCCCcccCcc---cCCc-cCCcCCCC
Confidence 568888 887643444444 99999874 1222 33557643
No 212
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=31.95 E-value=55 Score=16.70 Aligned_cols=14 Identities=29% Similarity=0.902 Sum_probs=9.8
Q ss_pred CCCCCCCCCcCcCc
Q psy10800 58 RQRKCPKCNAAFGA 71 (81)
Q Consensus 58 ~~~~CP~Cr~~~~~ 71 (81)
....|+.|.+.+..
T Consensus 99 ~~~~C~~C~k~f~~ 112 (129)
T 2wbt_A 99 HTKVCPVCKKEFTS 112 (129)
T ss_dssp CCCBCTTTCCBCSS
T ss_pred CCCCCCCCCcccCC
Confidence 34668888887754
No 213
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.35 E-value=23 Score=16.23 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=8.1
Q ss_pred hcCCcccCccCcc
Q psy10800 20 EYKETLTCPSCKV 32 (81)
Q Consensus 20 ~~~~~~~C~iC~~ 32 (81)
.+.++..||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4555667777764
No 214
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.30 E-value=28 Score=13.67 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 9 KPYSCAECKETFSDN 23 (42)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeECCCCCCccCCH
Confidence 357788887776653
No 215
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=31.21 E-value=19 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=17.4
Q ss_pred cccCccCccCccCceecCCCChhHH
Q psy10800 24 TLTCPSCKVKRKDAVLTKCFHVFCW 48 (81)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~CgH~fc~ 48 (81)
...|..|...-..-+-|.|||+.|.
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCg 58 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCG 58 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCcCceEEeccCCccccC
Confidence 3578888765444467789998763
No 216
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=31.02 E-value=57 Score=19.79 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHhcCCcccCccCccCccCceecCCCChhHHHHHH
Q psy10800 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLR 52 (81)
Q Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~ 52 (81)
...........|.-|...--..+.+..|..+|..|.-
T Consensus 34 ~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~ 70 (301)
T 2b0o_E 34 AEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSG 70 (301)
T ss_dssp HHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHH
T ss_pred HHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHH
Confidence 3445566788999998754444788999999999954
No 217
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=37.18 E-value=10 Score=13.55 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=4.9
Q ss_pred ccCccCccCcc
Q psy10800 25 LTCPSCKVKRK 35 (81)
Q Consensus 25 ~~C~iC~~~~~ 35 (81)
+.|++|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 34454544443
No 218
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.59 E-value=19 Score=16.50 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=7.0
Q ss_pred cCCcccCccCcc
Q psy10800 21 YKETLTCPSCKV 32 (81)
Q Consensus 21 ~~~~~~C~iC~~ 32 (81)
+.++..||+|..
T Consensus 33 lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 33 LPDDWACPVCGA 44 (52)
T ss_dssp SCTTCCCSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 445556776654
No 219
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=30.55 E-value=24 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=8.1
Q ss_pred hcCCcccCccCcc
Q psy10800 20 EYKETLTCPSCKV 32 (81)
Q Consensus 20 ~~~~~~~C~iC~~ 32 (81)
.+.++..||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 4555667777764
No 220
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=30.26 E-value=14 Score=18.13 Aligned_cols=10 Identities=30% Similarity=0.963 Sum_probs=8.2
Q ss_pred CCCCCCcCcC
Q psy10800 61 KCPKCNAAFG 70 (81)
Q Consensus 61 ~CP~Cr~~~~ 70 (81)
.||+|++++.
T Consensus 11 ~CP~Cgkp~~ 20 (68)
T 1lv3_A 11 NCPTCGKTVV 20 (68)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCCCCccc
Confidence 4999998874
No 221
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.16 E-value=24 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=7.7
Q ss_pred hcCCcccCccCcc
Q psy10800 20 EYKETLTCPSCKV 32 (81)
Q Consensus 20 ~~~~~~~C~iC~~ 32 (81)
.+.++..||+|..
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 3455566777754
No 222
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.33 E-value=11 Score=13.48 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.2
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 355566555443
No 223
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.07 E-value=20 Score=13.59 Aligned_cols=13 Identities=15% Similarity=0.672 Sum_probs=8.5
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4677777766654
No 224
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.94 E-value=32 Score=13.54 Aligned_cols=15 Identities=13% Similarity=0.499 Sum_probs=9.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 10 KPYPCEICGTRFRHL 24 (42)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCccCCH
Confidence 356788887766553
No 225
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.83 E-value=20 Score=13.36 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=7.9
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4667777665544
No 226
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.70 E-value=17 Score=12.73 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=6.6
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 456666655543
No 227
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.60 E-value=9.9 Score=20.19 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=8.7
Q ss_pred CCCChhHHHHHH
Q psy10800 41 KCFHVFCWDCLR 52 (81)
Q Consensus 41 ~CgH~fc~~Ci~ 52 (81)
.|+..|+..|+.
T Consensus 28 ~C~~~~H~~Cl~ 39 (114)
T 2kwj_A 28 DCGRSGHPTCLQ 39 (114)
T ss_dssp SSCCEECTTTTT
T ss_pred CCCCccchhhCC
Confidence 677777777764
No 228
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.31 E-value=4 Score=20.63 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=19.4
Q ss_pred cCccCccCccC-----ceec-CCCChhHHHHHHHH
Q psy10800 26 TCPSCKVKRKD-----AVLT-KCFHVFCWDCLRTR 54 (81)
Q Consensus 26 ~C~iC~~~~~~-----~~~~-~CgH~fc~~Ci~~~ 54 (81)
.||-|...+.. .+.- .|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 48888764421 1333 49999999887665
No 229
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.13 E-value=33 Score=13.91 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=10.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 11 KPYECDVCRKAFSHH 25 (46)
T ss_dssp SSCBCTTTCCBCSSS
T ss_pred CCcCCCCcCchhCCH
Confidence 357888888777654
No 230
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.11 E-value=32 Score=13.45 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=9.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 356788877766543
No 231
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.71 E-value=32 Score=13.64 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 11 KPYVCNECGKAFRSK 25 (44)
T ss_dssp SSSCCTTTCCCCSSH
T ss_pred cCeECCCCCCccCCH
Confidence 357788887776653
No 232
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.36 E-value=34 Score=13.76 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=10.9
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 11 KPYKCSDCGKSFTWK 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred CCccCCccChhhCCH
Confidence 357888888877654
No 233
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.31 E-value=35 Score=13.76 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=10.5
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq2_A 11 KPYQCNECGKAFSQT 25 (46)
T ss_dssp CSSSCCSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 357888888777653
No 234
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.30 E-value=34 Score=13.88 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=10.6
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 11 KPYKCQVCGKAFRVS 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cccCCCCCCcccCcH
Confidence 357888888777653
No 235
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.27 E-value=22 Score=13.39 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=8.2
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4677777665544
No 236
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.80 E-value=40 Score=17.04 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=7.8
Q ss_pred CCCCCcCcCcCCcee
Q psy10800 62 CPKCNAAFGANDYHR 76 (81)
Q Consensus 62 CP~Cr~~~~~~~~~~ 76 (81)
|+.|+..++.+.+.-
T Consensus 54 C~~C~~LiSkkrv~f 68 (81)
T 2jrp_A 54 CQNGHGLISKKRVNF 68 (81)
T ss_dssp CTTTTCCCCTTSSEE
T ss_pred eccCCCEeecceEEE
Confidence 555555555555443
No 237
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.79 E-value=36 Score=13.74 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=10.4
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 357888887777653
No 238
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.72 E-value=35 Score=13.76 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=10.3
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2yti_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCh
Confidence 357888887777653
No 239
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.65 E-value=30 Score=12.94 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=7.2
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 456666665543
No 240
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.51 E-value=27 Score=17.09 Aligned_cols=14 Identities=21% Similarity=0.947 Sum_probs=9.6
Q ss_pred HhcCCcccCccCcc
Q psy10800 19 REYKETLTCPSCKV 32 (81)
Q Consensus 19 ~~~~~~~~C~iC~~ 32 (81)
..+.++..||+|..
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 34566778888874
No 241
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.16 E-value=36 Score=13.74 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=10.3
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 11 NPFICSECGKVFTHK 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 357888887776653
No 242
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.91 E-value=19 Score=19.19 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=13.9
Q ss_pred CCCChhHHHHHHHHHhhCCC-CCCCCCcC
Q psy10800 41 KCFHVFCWDCLRTRYETRQR-KCPKCNAA 68 (81)
Q Consensus 41 ~CgH~fc~~Ci~~~~~~~~~-~CP~Cr~~ 68 (81)
.||+.|=. ..... .||.|+..
T Consensus 78 ~CG~~~e~-------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 78 DCSHVFKP-------NALDYGVCEKCHSK 99 (119)
T ss_dssp SSSCEECS-------CCSTTCCCSSSSSC
T ss_pred CCCCEEeC-------CCCCCCcCccccCC
Confidence 67887633 22345 79999876
No 243
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.90 E-value=19 Score=12.54 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=6.7
Q ss_pred ccCccCccCccC
Q psy10800 25 LTCPSCKVKRKD 36 (81)
Q Consensus 25 ~~C~iC~~~~~~ 36 (81)
+.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 456666655543
No 244
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.74 E-value=13 Score=18.90 Aligned_cols=46 Identities=17% Similarity=0.587 Sum_probs=29.4
Q ss_pred cccCccCccCcc---Cceec--CCCChhHHHHHHHHHh-------hCCCCCCCCCcCc
Q psy10800 24 TLTCPSCKVKRK---DAVLT--KCFHVFCWDCLRTRYE-------TRQRKCPKCNAAF 69 (81)
Q Consensus 24 ~~~C~iC~~~~~---~~~~~--~CgH~fc~~Ci~~~~~-------~~~~~CP~Cr~~~ 69 (81)
...|.+|...-. +.+++ .|...|+..|+..-+. .....|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 578999987533 34444 6777888888764332 2345688886544
No 245
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=26.53 E-value=64 Score=16.23 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=22.0
Q ss_pred cCCcccCccCccCc-cCce---ecCCCChhHHHHHHH
Q psy10800 21 YKETLTCPSCKVKR-KDAV---LTKCFHVFCWDCLRT 53 (81)
Q Consensus 21 ~~~~~~C~iC~~~~-~~~~---~~~CgH~fc~~Ci~~ 53 (81)
.+..+.|.||.+.- -..+ ...|.-.|...|..+
T Consensus 14 ~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 14 ARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred HHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 34578999997642 2222 236888898999865
No 246
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.48 E-value=17 Score=12.83 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=4.5
Q ss_pred ccCccCccCc
Q psy10800 25 LTCPSCKVKR 34 (81)
Q Consensus 25 ~~C~iC~~~~ 34 (81)
+.|++|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 3455554433
No 247
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=26.47 E-value=42 Score=13.55 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=11.1
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 11 KPFKCVECGKGFSRR 25 (46)
T ss_dssp CSBCCSSSCCCBSST
T ss_pred CCcccCccCcccCCH
Confidence 357899888877654
No 248
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.41 E-value=40 Score=13.58 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=10.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 11 KPFKCDICGKSFCGR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCcCCchhCCH
Confidence 357888888777654
No 249
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.34 E-value=39 Score=13.54 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=10.3
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep1_A 11 KPYECSDCGKSFIKK 25 (46)
T ss_dssp CSSCCSSSCCCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 357888887777653
No 250
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.33 E-value=38 Score=13.68 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=10.5
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en9_A 11 KLFKCNECKKTFTQS 25 (46)
T ss_dssp CCCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 357888888777653
No 251
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.24 E-value=38 Score=13.63 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=10.3
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq1_A 11 KPYKCNECGKAFRAH 25 (46)
T ss_dssp CCCCCTTTTCCCSSH
T ss_pred CCeECCcCChhhCCH
Confidence 357888887776653
No 252
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.02 E-value=24 Score=13.32 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=8.2
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4667777666554
No 253
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.86 E-value=27 Score=13.27 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=7.7
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4567776665543
No 254
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.82 E-value=40 Score=13.59 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=10.5
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yth_A 11 KPFQCEECGKRFTQN 25 (46)
T ss_dssp SSBCCSSSCCCBSSH
T ss_pred cCCCCCCCCcccCCH
Confidence 357888888777653
No 255
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.80 E-value=40 Score=13.44 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|.+|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (44)
T 2eou_A 11 TTSECQECGKIFRHS 25 (44)
T ss_dssp CCCCCTTTCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 357788887777653
No 256
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.68 E-value=42 Score=13.54 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=10.1
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoh_A 11 KPYECKECRKTFIQI 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCCcCchhCCH
Confidence 357788887766653
No 257
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.59 E-value=39 Score=13.55 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=10.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 357888888777654
No 258
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.57 E-value=40 Score=13.55 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=10.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 11 KPFDCIDCGKAFSDH 25 (46)
T ss_dssp CSBCCTTTCCCBSSH
T ss_pred CCeECCCCCceeCCH
Confidence 357888888777654
No 259
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.51 E-value=25 Score=13.10 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=7.6
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|.+|...|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 4567766665543
No 260
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.47 E-value=16 Score=14.65 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=6.5
Q ss_pred ccCccCccCc
Q psy10800 25 LTCPSCKVKR 34 (81)
Q Consensus 25 ~~C~iC~~~~ 34 (81)
..|+.|....
T Consensus 4 ~~C~~C~k~V 13 (31)
T 1zfo_A 4 PNCARCGKIV 13 (31)
T ss_dssp CBCSSSCSBC
T ss_pred CcCCccCCEE
Confidence 3678887644
No 261
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.43 E-value=42 Score=13.54 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=10.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emz_A 11 RPFKCNECGKGFGRR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 357888888777654
No 262
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.30 E-value=41 Score=13.59 Aligned_cols=15 Identities=13% Similarity=0.414 Sum_probs=10.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 357888888777653
No 263
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=25.26 E-value=44 Score=13.45 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=11.0
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 11 KPYECKECGKAFSQT 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CceECCCCCchhCCH
Confidence 357888888877654
No 264
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.05 E-value=43 Score=13.51 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=9.9
Q ss_pred CcccCccCccCccC
Q psy10800 23 ETLTCPSCKVKRKD 36 (81)
Q Consensus 23 ~~~~C~iC~~~~~~ 36 (81)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em6_A 11 KCYKCDVCGKEFSQ 24 (46)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred CCeECCCCCcccCC
Confidence 35788888777665
No 265
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.82 E-value=42 Score=13.57 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=10.4
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 11 RGHRCSDCGKFFLQA 25 (46)
T ss_dssp SSCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCeeCCh
Confidence 357888888777653
No 266
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.64 E-value=41 Score=13.53 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=10.6
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 357888888777653
No 267
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.58 E-value=45 Score=13.39 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=10.6
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 11 KPYECIECGKAFIQN 25 (47)
T ss_dssp CSBCCSSSCCCBSSH
T ss_pred CCEECCccCchhCCh
Confidence 357888888777654
No 268
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=24.50 E-value=44 Score=13.41 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.6
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 11 KTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 357888888777653
No 269
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.33 E-value=27 Score=17.67 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=7.7
Q ss_pred hcCCcccCccCcc
Q psy10800 20 EYKETLTCPSCKV 32 (81)
Q Consensus 20 ~~~~~~~C~iC~~ 32 (81)
.+.++..||+|..
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 3445567777764
No 270
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.28 E-value=19 Score=17.63 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.6
Q ss_pred CcccCccCccCccCc----eecCCCChhHHH
Q psy10800 23 ETLTCPSCKVKRKDA----VLTKCFHVFCWD 49 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~ 49 (81)
....|..|.....-+ ..-.||..||..
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhc
Confidence 356899998766543 233789999874
No 271
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.19 E-value=24 Score=15.84 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=21.3
Q ss_pred cCccCccCccCc--eec---CCCChhHHHHHH---HHHhhCCCCCCCCC
Q psy10800 26 TCPSCKVKRKDA--VLT---KCFHVFCWDCLR---TRYETRQRKCPKCN 66 (81)
Q Consensus 26 ~C~iC~~~~~~~--~~~---~CgH~fc~~Ci~---~~~~~~~~~CP~Cr 66 (81)
.|.+|...+.+. ++. .|..-|+..|+. .-.......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467787766432 222 355566666653 11112456688874
No 272
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.19 E-value=29 Score=13.08 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=8.1
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4667777665544
No 273
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.18 E-value=52 Score=15.86 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=19.4
Q ss_pred CcccCccCccCccC-ceecCCCChhHHH
Q psy10800 23 ETLTCPSCKVKRKD-AVLTKCFHVFCWD 49 (81)
Q Consensus 23 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~ 49 (81)
....|..|...+.- +..-.||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 35789999875443 4555799999974
No 274
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.04 E-value=44 Score=13.40 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 11 KLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCBTTTTBCCSCH
T ss_pred CCeECCCCCCccCch
Confidence 357888888777654
No 275
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.01 E-value=44 Score=13.37 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=10.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 357888888777654
No 276
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.71 E-value=48 Score=13.32 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=10.7
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 357888888777654
No 277
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=45 Score=13.47 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=11.0
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 357888888877654
No 278
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.14 E-value=30 Score=13.59 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=9.4
Q ss_pred CcccCccCccCccC
Q psy10800 23 ETLTCPSCKVKRKD 36 (81)
Q Consensus 23 ~~~~C~iC~~~~~~ 36 (81)
..+.|++|...|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2el5_A 9 NPYECSECGKAFNR 22 (42)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCccCCCcChhhCC
Confidence 34678888776654
No 279
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.07 E-value=19 Score=20.13 Aligned_cols=9 Identities=33% Similarity=1.132 Sum_probs=7.3
Q ss_pred CCCCCCcCc
Q psy10800 61 KCPKCNAAF 69 (81)
Q Consensus 61 ~CP~Cr~~~ 69 (81)
.||.|+..+
T Consensus 150 ~Cp~CG~~~ 158 (165)
T 2lcq_A 150 VCPDCGSKV 158 (165)
T ss_dssp BCTTTCCBE
T ss_pred cCCCCCCcc
Confidence 599998764
No 280
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.70 E-value=31 Score=13.85 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=8.8
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (44)
T 2epv_A 12 PYECNECGKAFIW 24 (44)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCc
Confidence 4678877766654
No 281
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.66 E-value=27 Score=13.24 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=8.1
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4667777665544
No 282
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.48 E-value=51 Score=13.25 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.0
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 11 KPYQCSECGKSFSGS 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred CCeeCCCCCcccCCH
Confidence 357888888877664
No 283
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.48 E-value=21 Score=18.29 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.5
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.||.|.+.|..
T Consensus 51 ~FkCP~CgEEFyG 63 (95)
T 2k5c_A 51 VFKCPVCGEEFYG 63 (95)
T ss_dssp EEECTTTCCEEET
T ss_pred hhcCCCccHHHhc
Confidence 5899999987754
No 284
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.40 E-value=34 Score=13.64 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=9.8
Q ss_pred cccCccCccCccCc
Q psy10800 24 TLTCPSCKVKRKDA 37 (81)
Q Consensus 24 ~~~C~iC~~~~~~~ 37 (81)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 12 PFKCSKCDRVFTQR 25 (44)
T ss_dssp SEECSSSSCEESSS
T ss_pred CeECCCCCchhCCH
Confidence 57788887766654
No 285
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.29 E-value=65 Score=18.84 Aligned_cols=9 Identities=44% Similarity=1.062 Sum_probs=7.2
Q ss_pred CCCCCCCcC
Q psy10800 60 RKCPKCNAA 68 (81)
Q Consensus 60 ~~CP~Cr~~ 68 (81)
..||.|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999765
No 286
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.28 E-value=32 Score=13.64 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eof_A 11 KPYECNECQKAFNTK 25 (44)
T ss_dssp CSEECTTTCCEESCH
T ss_pred CCeECCCCCcccCCH
Confidence 357788887766653
No 287
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.20 E-value=1.1e+02 Score=16.92 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHhcCCcccCccCccCccCceecCCCChhHHHHHH
Q psy10800 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLR 52 (81)
Q Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~ 52 (81)
...........|.-|...--..+.++-|-..|..|.-
T Consensus 21 ~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~Csg 57 (141)
T 2crr_A 21 SKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAG 57 (141)
T ss_dssp HHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHH
T ss_pred HHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhH
Confidence 3444556678999998764444777778778988865
No 288
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.00 E-value=62 Score=15.57 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=25.8
Q ss_pred CcccCccCccCccC-ceecCCCChhHHHHHHHHHhhCCCCCCCCCcCcC
Q psy10800 23 ETLTCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70 (81)
Q Consensus 23 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~~~ 70 (81)
....|..|...+.- +..-.||..||..=-. .....|++--+...
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~----~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSHRY----PEKHECSFDFKEVG 58 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSSCS----STTTTCCCCCSCSC
T ss_pred cCCcChhhCCcccccCeEeecCCEecccCCC----ccccCCCcchhHHh
Confidence 35689999875443 4445899999874110 12245766544433
No 289
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.59 E-value=61 Score=13.71 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcccCccCccCccCceecCCCChhHHHHHHHHHh-----hCCCCCCCCCcCcCc
Q psy10800 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYE-----TRQRKCPKCNAAFGA 71 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 71 (81)
..+.|++|...|... .-+...+. .....|+.|.+.+..
T Consensus 11 k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 357788887766653 22222222 123569999887754
No 290
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.37 E-value=43 Score=17.17 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=5.3
Q ss_pred cCCcccCccCc
Q psy10800 21 YKETLTCPSCK 31 (81)
Q Consensus 21 ~~~~~~C~iC~ 31 (81)
+.++..||+|.
T Consensus 65 lPddW~CPvCg 75 (87)
T 1s24_A 65 IPDDWCCPDCG 75 (87)
T ss_dssp CCTTCCCSSSC
T ss_pred CCCCCCCCCCC
Confidence 33444555554
No 291
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.30 E-value=33 Score=13.26 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=8.3
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|.+|...|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4677777666554
No 292
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=21.14 E-value=36 Score=13.30 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=8.8
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2epc_A 11 PYLCGQCGKSFTQ 23 (42)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4678877766654
No 293
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.96 E-value=35 Score=13.75 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.1
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2emi_A 11 RHYECSECGKAFIQK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCCCCCCCCcccCCH
Confidence 357788887766553
No 294
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.76 E-value=36 Score=13.27 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.7
Q ss_pred cccCccCccCccC
Q psy10800 24 TLTCPSCKVKRKD 36 (81)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (81)
.+.|++|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (41)
T 2ept_A 10 VYECQECGKSFRQ 22 (41)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCCcCC
Confidence 4677777766654
No 295
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.76 E-value=36 Score=13.72 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=10.4
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eml_A 11 KPYECSVCGKAFSHR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCcCCccCCH
Confidence 357888888776653
No 296
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.75 E-value=36 Score=13.68 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=10.1
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytf_A 11 KPFECSECQKAFNTK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcCCCCCCcccCCH
Confidence 357788887766553
No 297
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.72 E-value=34 Score=12.60 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=5.2
Q ss_pred ccCccCccCc
Q psy10800 25 LTCPSCKVKR 34 (81)
Q Consensus 25 ~~C~iC~~~~ 34 (81)
+.|.+|...|
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 4566555444
No 298
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.68 E-value=36 Score=13.76 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emj_A 11 KPFECAECGKSFSIS 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCEECCCCCcccCCH
Confidence 357788887776653
No 299
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=31 Score=13.75 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=10.0
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eoj_A 11 NPYECCECGKVFSRK 25 (44)
T ss_dssp CSCEETTTTEECSSH
T ss_pred cCeeCCCCCCccCCH
Confidence 357788887766553
No 300
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=37 Score=13.72 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=10.5
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 11 KSHQCHECGRGFTLK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCcCCCccCCH
Confidence 357888888777653
No 301
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.56 E-value=38 Score=13.66 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=11.1
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytg_A 11 KPFKCGECGKSYNQR 25 (46)
T ss_dssp CSEECTTTCCEESSS
T ss_pred CCeECCCCCcccCCH
Confidence 357899888877664
No 302
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.55 E-value=39 Score=13.60 Aligned_cols=15 Identities=13% Similarity=0.446 Sum_probs=10.8
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 11 KPFQCKECGMNFSWS 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCcccChhhCCH
Confidence 357888888777654
No 303
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.46 E-value=37 Score=13.69 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=10.3
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2em3_A 11 KPYECKVCSKAFTQK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCcccCCH
Confidence 357888887776653
No 304
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.44 E-value=43 Score=15.92 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=7.2
Q ss_pred CCCCCCcCcCcCC
Q psy10800 61 KCPKCNAAFGAND 73 (81)
Q Consensus 61 ~CP~Cr~~~~~~~ 73 (81)
.||.|+.......
T Consensus 19 ~CP~CG~~t~~ah 31 (60)
T 2aus_D 19 TCPVCGEKTKVAH 31 (60)
T ss_dssp BCTTTCSBCEESS
T ss_pred cCcCCCCccCCCC
Confidence 3677766554433
No 305
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=37 Score=13.64 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=9.6
Q ss_pred CcccCccCccCccC
Q psy10800 23 ETLTCPSCKVKRKD 36 (81)
Q Consensus 23 ~~~~C~iC~~~~~~ 36 (81)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yts_A 11 KPYICNECGKSFIQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCEECCCCChhhCC
Confidence 35778888776654
No 306
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=40 Score=13.61 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=10.0
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCS 25 (46)
T ss_dssp CCEECSSSCCEESSS
T ss_pred CCEECcCCCCcCCCH
Confidence 347788887766553
No 307
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.16 E-value=37 Score=13.65 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.2
Q ss_pred CcccCccCccCccCc
Q psy10800 23 ETLTCPSCKVKRKDA 37 (81)
Q Consensus 23 ~~~~C~iC~~~~~~~ 37 (81)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eow_A 11 KPYKCNECGKAFRAR 25 (46)
T ss_dssp CCEECTTSCCEESSH
T ss_pred CCeeccccCChhcCH
Confidence 357788887766653
Done!