RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10800
(81 letters)
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 56.7 bits (136), Expect = 2e-11
Identities = 14/63 (22%), Positives = 20/63 (31%)
Query: 11 DEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
E C C KD + C H+ C CL + E+ + CP C
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
Query: 71 AND 73
+
Sbjct: 379 GTE 381
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 50.9 bits (122), Expect = 1e-10
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 23 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75
++CP C + V T+C HVFC CLR CP C YH
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKRYH 60
Query: 76 RLYL 79
+Y+
Sbjct: 61 PIYI 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 50.6 bits (121), Expect = 2e-10
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 23 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYH 75
T++CP C + V T+C HVFC CLR CP C YH
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKRYH 67
Query: 76 RLYL 79
+Y+
Sbjct: 68 PIYI 71
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 48.7 bits (116), Expect = 1e-09
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
C C+ ++ V+TKC H FC C + +C C+
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQ 57
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 44.8 bits (106), Expect = 3e-08
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72
C C V C HVFC+ C++ ++C C +
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPED 62
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 45.3 bits (107), Expect = 4e-08
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 5 EQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCP 63
+DE +E I E C C K +DA C + C+ C+R ++ +CP
Sbjct: 6 HHHSHMDEQSVESI---AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCP 62
Query: 64 KCNAAFGAND 73
C A +
Sbjct: 63 HCRAPLQLRE 72
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 43.2 bits (102), Expect = 1e-07
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+ C C + T+C H FC C+ + KC C + +
Sbjct: 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 43.4 bits (102), Expect = 3e-07
Identities = 15/72 (20%), Positives = 26/72 (36%)
Query: 1 MKKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR 60
+ ++ + + +ET C C+ + T C H C DCL + +
Sbjct: 29 LASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVF 88
Query: 61 KCPKCNAAFGAN 72
CP C G +
Sbjct: 89 SCPACRYDLGRS 100
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 42.8 bits (101), Expect = 4e-07
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 15 LEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
L ++ + L C C A+ + +C H +C C+R ++ + + +CP C
Sbjct: 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIR-KFLSYKTQCPTCCVTV 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 43.4 bits (102), Expect = 6e-07
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 17 EIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKCNAAF 69
R L CP C K+ + TK C H FC DC+ T + ++CP C
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 43.1 bits (101), Expect = 7e-07
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK 61
+K + +EV+ + L C C +AV C H FC C+ + R+ +
Sbjct: 42 EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIN-EWMKRKIE 100
Query: 62 CPKCNAAFGANDY 74
CP C + Y
Sbjct: 101 CPICRKDIKSKTY 113
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 40.9 bits (96), Expect = 1e-06
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 7 AGTLDEVMLEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKC 65
+ L E+ Y + C CK DA +T+C H FC C+ R+ +CPKC
Sbjct: 1 GSSGSSGNLSELTPY---ILCSICKGYLIDATTITECLHTFCKSCIV-RHFYYSNRCPKC 56
Query: 66 NA 67
N
Sbjct: 57 NI 58
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 41.9 bits (98), Expect = 2e-06
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+++ C C+ V T+CFH C DCL+ ++ + CP C G N
Sbjct: 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 40.9 bits (96), Expect = 2e-06
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 14 MLEEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTR-YETRQRKCPKCNAAF 69
+ E + L C CK DAV+ C + +C +C+RT E+ + CP C+
Sbjct: 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 40.0 bits (94), Expect = 2e-06
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
E + L C C+ + K L C H C CL E +CP C
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPIC 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 40.1 bits (94), Expect = 3e-06
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK-----CPKCNAAF 69
KE +TCP C K+ V C H FC C+ YE+ + CP C +
Sbjct: 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 39.7 bits (93), Expect = 4e-06
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAF 69
+E + CP C + V C H FC C+ ET KCP C +
Sbjct: 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 40.5 bits (94), Expect = 6e-06
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+ + C +C+ + +C H +C CL + + + C C +
Sbjct: 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 39.8 bits (93), Expect = 7e-06
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76
+ CP C + ++AV T C H FC C+ KCP N N
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 38.6 bits (90), Expect = 1e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDCLRTR-YETRQRKCPKCNAAFGAND 73
E + L C CK DAV+ C + +C +C+RT E+ + CP C+ + D
Sbjct: 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 39.1 bits (91), Expect = 1e-05
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+ ++++C C+ D V T C H+FC C+ + CP C D
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 37.7 bits (88), Expect = 1e-05
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 65
+E + CP C + V C H FC C+ ET KCP C
Sbjct: 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 37.7 bits (88), Expect = 1e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 65
+ +C C K+ V+ +C H FC C+ +E +R CP C
Sbjct: 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 38.7 bits (90), Expect = 2e-05
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFG 70
C C + V C H C C ++ E CP C
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 37.6 bits (87), Expect = 2e-05
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 23 ETLTCPSCKVKR-----KDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74
+ CP CK + ++ C H C C+ + CP+C +++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 38.0 bits (88), Expect = 3e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 22 KETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
++ L C C ++ V L C H+FC +C+ T CP C
Sbjct: 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPA 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 37.8 bits (88), Expect = 3e-05
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQ--RKCPKCNAAF 69
++ L CP C K+ V TKC H+FC C+ ++ +CP C
Sbjct: 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 36.8 bits (85), Expect = 5e-05
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 23 ETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
T++CP C + V T+C HVFC CLR CP C
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRK 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 36.5 bits (85), Expect = 7e-05
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK-----CPKCNAAF 69
KE +TCP C + C H FC CL ++ CP C ++
Sbjct: 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 37.1 bits (85), Expect = 9e-05
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 33 KRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLYL 79
+ V T+C HVFC CLR + CP C YH +Y+
Sbjct: 88 NGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIYI 133
Score = 32.8 bits (74), Expect = 0.004
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 22 KETLTCPSC-------KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
T++CP C + V T+C HVFC CLR + CP C
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 36.3 bits (84), Expect = 1e-04
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 10 LDEVMLEEIREYKETLTCPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAA 68
+ +I E L C C DA + +C H FC C+ ET + CP C+
Sbjct: 1 MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQ 59
Query: 69 FGANDYHR 76
Sbjct: 60 VHKTRPLL 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 37.0 bits (85), Expect = 1e-04
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHR 76
+ CP C + ++AV T C H FC C+ KCP N N
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 34.9 bits (81), Expect = 2e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRK------CPKCNAAF 69
+E +TCP C + + C H C C+ + CP C ++
Sbjct: 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 33.9 bits (78), Expect = 6e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 26 TCPSCKVKRKD-AVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
CP C + ++ C H FC+ C+ + CP C
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPV 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 34.0 bits (77), Expect = 0.001
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 15 LEEIREYKETLTCPSCKVKRKDAV--LTKCFHVFCWDCLRTRYETRQRK----CPKCNAA 68
+E++ K V LTKC H F CL Y + CP C
Sbjct: 32 MEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91
Query: 69 FG 70
+G
Sbjct: 92 YG 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 33.3 bits (75), Expect = 0.002
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 27 CPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
C C + K + C HVFC+DC + + CP C+
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSD 45
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 34.2 bits (77), Expect = 0.002
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTK-CFHVFCWDC---LRTRYET 57
I++ T D + +L CP K++ C H+ C+D L+ +
Sbjct: 193 ALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK 252
Query: 58 RQRKCPKCNAAFGAND 73
CP C+
Sbjct: 253 PTWICPVCDKKAAYES 268
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 32.0 bits (73), Expect = 0.004
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 22 KETLTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCPKC 65
+E L CP C ++ L C H C CL + +CP C
Sbjct: 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 30.1 bits (68), Expect = 0.022
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 12 EVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKC 65
V+ E++R+ KE + C C + ++ C H C C + + CP C
Sbjct: 6 RVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAA-----QLQSCPVC 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 29.3 bits (66), Expect = 0.036
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
+++ + C C R D +L C H FC C+ ++ R R CP C
Sbjct: 7 GRVKQLTDEEECCICMDGRADLILP-CAHSFCQKCID-KWSDRHRNCPIC 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 30.3 bits (67), Expect = 0.037
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 22 KETLTCPSCKVKRKDAVL-TKCFHVFCWDCLRTRYETR-QRKCPK--CNAAFGAND 73
K LTCP + ++ KC HVF D ++ + R CP+ C+ D
Sbjct: 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 29.0 bits (65), Expect = 0.058
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 16 EEIREYKETLTCPSCKVKRKDAVLTKCFHVF-CWDCLRTRYETRQRKCPKC 65
E++R +E C C + V C H+ C C KCP C
Sbjct: 17 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC-----AEAVDKCPMC 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.067
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 23/60 (38%)
Query: 18 IREYKETLTC---PSCK---------VKRKDAVLTKCFHVF--------CWDCLRTRYET 57
I+ Y P K V +A + +F ++ LR Y+T
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYFEELRDLYQT 179
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 28.4 bits (63), Expect = 0.081
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 26 TCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQ-RKCPKCNAAF 69
C C + + C C+ +++ +CP CN +
Sbjct: 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 29.3 bits (65), Expect = 0.087
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 8 GTLDEVMLEEIREYKETL-TCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQ-RKCPK 64
+ E+ Y + + C C + + C C+ +++ +CP
Sbjct: 163 RAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222
Query: 65 CNAAF 69
CN +
Sbjct: 223 CNDYW 227
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 28.2 bits (62), Expect = 0.12
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 22 KETLTCPSCKVKRKDAVLTKCF----HVFCWDCLRTRYETRQR----KCPKC 65
L C C + +D +C H FC+ C R + + CP
Sbjct: 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 27.2 bits (61), Expect = 0.18
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 27 CPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
CP C R A + C H+ C +CP C+
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYE-EMLKEGYRCPLCSG 51
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 27.5 bits (61), Expect = 0.22
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 23 ETLTCPSC---KVKRKDAVLTKCFHVFCWDCLRTRYET-------RQRKCPKCN 66
+ C C + + +C +FC CL+ E CP
Sbjct: 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 0.24
Identities = 11/43 (25%), Positives = 12/43 (27%), Gaps = 14/43 (32%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
LTCP CKV V R+ C C
Sbjct: 20 IVLTCPECKVYPPKIV--------------ERFSEGDVVCALC 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 27.4 bits (60), Expect = 0.26
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 22 KETLTCPSCK----VKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
++ + CP C + + C + C C CP C + +
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.2 bits (60), Expect = 0.31
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 26 TCPSCKVKRKDA----VLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
C C+ + K V +C H F C+ + R CP C +
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQDW 74
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF
domain, transcription, RNA binding protein; 2.27A
{Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6
a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 27.9 bits (63), Expect = 0.32
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 5 EQAGTLDEVMLEEIRE---YKETLTCPSCKVKRKDAVL 39
E G+LD+ L + E Y L +R+ A+L
Sbjct: 47 EVTGSLDDTQLRMLEERLRYLREL------EERRGAIL 78
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.5 bits (62), Expect = 0.39
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 12 EVMLEEIREYKETLTCPSCKVKR-KDAVL 39
E M E + + CP C R K +L
Sbjct: 418 EQMKERYEGFMRDVPCPVCAGTRLKPEIL 446
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 27.5 bits (62), Expect = 0.42
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 12 EVMLEEIREYKETLTCPSCKVKR-KDAVL 39
+ + E++ +Y CP+C+ R K L
Sbjct: 409 DYIREQMEKYMAEQPCPTCQGYRLKKESL 437
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.7 bits (60), Expect = 0.67
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 12 EVMLEEIREYKETLTCPSCKVKR-KDAVL 39
M + ++ Y + CP C KR + L
Sbjct: 272 ASMKKRVQGYMISEECPLCHGKRLRQEAL 300
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 1 MKKIEQAG-------------TLDEVMLEEIREYKETL 25
M+ IEQAG TL + + + +R+ + L
Sbjct: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKL 816
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS,
T4PB, inner membrane membrane, transmembrane, transport
protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB:
2vmb_A* 2vma_A*
Length = 123
Score = 25.3 bits (56), Expect = 1.9
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 5 EQAGTLDEVMLEEIREYKE 23
E++G LD V LE + +Y E
Sbjct: 87 EKSGHLDSV-LERLADYAE 104
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 25.6 bits (55), Expect = 2.1
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 10/39 (25%)
Query: 41 KCFHVFCWDCL----------RTRYETRQRKCPKCNAAF 69
KC CL +T E +CP C A
Sbjct: 333 KCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus
biogenesis, protein transpor; 2.05A {Thermus
thermophilus}
Length = 116
Score = 24.9 bits (55), Expect = 2.5
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 5 EQAGTLDEVMLEEIREYKE 23
E +G LD + L+ + + E
Sbjct: 87 ETSGGLDLI-LDRLASFLE 104
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 25.1 bits (55), Expect = 3.1
Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 43 FHVFCWDCLR---TRYETRQRKCPKCNAAFGANDYH 75
V CW C+ Y + C C
Sbjct: 500 GDVCCWICIPCEPYEYLVDEFTCMDCGPGQWPTADL 535
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 24.8 bits (54), Expect = 4.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 11 DEVMLEEIREYKETLTCP 28
+ V EE+ + T P
Sbjct: 162 ESVSPEELSRLRGNATTP 179
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 24.4 bits (54), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCP 28
K+I+QA D+V+ + I EY++ P
Sbjct: 450 KEIQQASNPDDVLKQRIAEYRKLFANP 476
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 23.2 bits (50), Expect = 6.2
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 22 KETLTCPSCKVKRKDAVLTKCFH-VFCWDCLRTRYETRQRKCPKC 65
+ + C C+ + VL C H C C++ ++CP C
Sbjct: 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK-----YFQQCPMC 52
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Length = 83
Score = 23.3 bits (50), Expect = 7.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 7 AGTLDEVMLEEIREYKETLTCPSC 30
G ++ L+++ E ++ CPSC
Sbjct: 28 CGDRFQIYLDDMFEGEKVAVCPSC 51
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 24.1 bits (53), Expect = 7.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 KKIEQAGTLDEVMLEEIREYKETLTCP 28
K+I+ A D + E+I EY+ P
Sbjct: 451 KEIKAADDPDAMRAEKIEEYQNAFNTP 477
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 23.5 bits (51), Expect = 7.5
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 16 EEIREYKETLTCPSCK---VKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
E+ + + CP C VK A C H F C+ + CP C
Sbjct: 32 EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVC 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 23.6 bits (52), Expect = 9.1
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 12 EVMLEEI-REYKETLTCPSCKVKR-KDAVL 39
M E + + + TC C +R L
Sbjct: 368 PEMKEWLEKNFIVQRTCSVCGGRRLNREAL 397
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 23.5 bits (51), Expect = 9.1
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1 MKKIEQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDC 50
+ + +A D ++ ++Y+ CP C V + V + + + C
Sbjct: 128 SRYLSRASITDILLSHRTKDYQHL--CPKCGVGVLEPVYNEKGEIKVFRC 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.449
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,260,456
Number of extensions: 59936
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 109
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)