RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10800
(81 letters)
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 53.0 bits (127), Expect = 1e-11
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+ ++++C C+ D V T C H+FC C+ + CP C D
Sbjct: 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 42.3 bits (99), Expect = 1e-07
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNA 67
C C KD + C H+ C CL + E+ + CP C
Sbjct: 22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 66
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 42.7 bits (100), Expect = 2e-07
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 10 LDEVMLEEIR----EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQR--KCP 63
L + +EE++ ++ L CP C K+ V TKC H+FC C+ ++ +CP
Sbjct: 3 LSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
Query: 64 KCNAAFGANDYHR 76
C
Sbjct: 63 LCKNDITKRSLQE 75
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 37.9 bits (88), Expect = 4e-06
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 23 ETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
+ L C C+ + K L C H C CL E +CP C A +
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPICQAPW 47
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 35.1 bits (80), Expect = 7e-05
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 23 ETLTCPSC-----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDY 74
+ CP C + ++ C H C C+ + CP+C +++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 32.7 bits (74), Expect = 7e-04
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 20 EYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
E+ E CP KD V+ + ++ + + CPK
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.5 bits (73), Expect = 0.001
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 16 EEIREYKETLTCPSCK-VKRKDAVLTKCFHVFCWDCLRTRYETRQRKC 62
+ ++ L C C + R+ L C H+FC +C+ T C
Sbjct: 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC 61
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 31.1 bits (70), Expect = 0.002
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 27 CPSCKVKRKDAV-LTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
CP C + C H FC+ C+ R+ + CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCIT-RWIRQNPTCPLCKVPV 50
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 30.0 bits (66), Expect = 0.012
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 26 TCPSCKVKRKDAVLTKCFHVFCWDC----LRTRYETRQRKCPKCNAAFG 70
T LTKC H F C + +CP C +G
Sbjct: 45 TDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 29.4 bits (65), Expect = 0.015
Identities = 4/60 (6%), Positives = 13/60 (21%)
Query: 19 REYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGANDYHRLY 78
R+ + L ++ +T + + + P +
Sbjct: 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 61
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 27.5 bits (61), Expect = 0.049
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 22 KETLTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
+ + C C + + L +C H F +C+ CP C
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLC 49
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 27.0 bits (59), Expect = 0.077
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 25 LTCPSC----KVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAFGAN 72
+ CP C ++ + C + C C CP C + +
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 26.3 bits (57), Expect = 0.29
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 27 CPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNAAF 69
S + C H F + C+ R+ ++ CP N +
Sbjct: 42 QASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREW 83
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 23.6 bits (50), Expect = 1.6
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 25 LTCPSCKVKRKDAVLTK-CFHVFCWDCLRTRYETRQRKCPKCNAAFGAND 73
+ C + VL+ +F L +Y P N +
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLE-QYVKDTGNDPITNEPLSIEE 49
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 23.5 bits (50), Expect = 2.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
LTC SCKV K A K ++ T + R++ CP C
Sbjct: 20 LTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 60
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 23.6 bits (50), Expect = 2.5
Identities = 6/59 (10%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 9 TLDEVMLEEIREYKETLTCP-SCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCN 66
L + E + + P + VL + + Q +
Sbjct: 7 GLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRS 65
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 82
Score = 22.8 bits (49), Expect = 3.7
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 12 EVMLEEIREYKETLTCPSC 30
++ L+++ E ++ CPSC
Sbjct: 32 QIYLDDMFEGEKVAVCPSC 50
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 324
Score = 23.3 bits (50), Expect = 4.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 5 EQAGTLDEVMLEEIREYKETLTCPSCKVKRKDAVLTK 41
E G+LD+ L + E L +R+ A+L
Sbjct: 47 EVTGSLDDTQLRMLEERLRYLR---ELEERRGAILAS 80
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 23.2 bits (49), Expect = 4.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 12 EVMLEEIREY-KETLTCPSCKVKRKDAVLTKCFHVFCW 48
L+ ++Y +ET C C+ K K V+ + H
Sbjct: 5 SSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSV 42
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 22.0 bits (47), Expect = 7.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 12 EVMLEEIREYKETLTCPSCK 31
+ E++ ++ TCPSC
Sbjct: 33 AITKEDLENGEDVATCPSCS 52
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 22.0 bits (46), Expect = 9.1
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 25 LTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKC 65
TC CK K V ++ + + R+ +C C
Sbjct: 18 RTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFC 58
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 22.0 bits (46), Expect = 9.9
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 22 KETLTCPSC---KVKRKDAVLTKCFHVFCWDCLRTRYETRQR-------KCPKCN 66
+ C C + + +C +FC CL+ E + CP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.137 0.449
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,720
Number of extensions: 13440
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 50
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)