BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10801
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 41/173 (23%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ DGT YSA ++L+TV L +L+ I F PPL K + AI L
Sbjct: 574 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGA--------------- 618
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFW------TQHDEQTLFKDM---------------- 101
G I+KI ++FP ++W QG FF ++ +F DM
Sbjct: 619 GIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGE 678
Query: 102 --AHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
A D ++VLQ + L F +P+P + + WS +P + +Y
Sbjct: 679 AVASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAY 729
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 41/173 (23%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ DGT YSA ++L+TV L +L+ I F PPL K + AI L
Sbjct: 566 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGA--------------- 610
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFW------TQHDEQTLFKDM---------------- 101
G I+KI ++FP ++W QG FF ++ +F DM
Sbjct: 611 GIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGE 670
Query: 102 --AHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
A D ++VLQ + L F +P+P + + WS +P + +Y
Sbjct: 671 AVASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAY 721
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 41/173 (23%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ DGT YSA ++L+TV L +L+ I F PPL K + AI L
Sbjct: 586 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGA--------------- 630
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFW------TQHDEQTLFKDM---------------- 101
G I+KI ++FP ++W QG FF ++ +F DM
Sbjct: 631 GIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGE 690
Query: 102 --AHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
A D ++VLQ + L F +P+P + + WS +P + +Y
Sbjct: 691 AVASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAY 741
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 40/171 (23%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIK--GLAVETSVLYFVLFQGL 61
+ D + YSAD ++++ SLGVL+S+LI F P LP + AI +AV T
Sbjct: 251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYT----------- 299
Query: 62 AFGTIDKIFIRFPKKWWPE-----------DYQGFHFFWTQHDEQTLFKDMAHPEIFDFE 110
KIF++FP+K+WPE +G++ W + ++Q ++ + D E
Sbjct: 300 ------KIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 111 ---------KVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+ +A+IM++ R G +P+ I+ W + ++G++
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 403
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 36/169 (21%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ D + YSAD ++++ SLGVL+S+LI F P LP + AI + +
Sbjct: 251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTM---------- 300
Query: 64 GTIDKIFIRFPKKWWPE-----------DYQGFHFFWTQHDEQTLFKDMAHPEIFDFE-- 110
IF++FP+K+WPE +G++ W + ++Q ++ + D E
Sbjct: 301 -----IFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 355
Query: 111 -------KVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+ +A+IM++ R G +P+ I+ W + ++G++
Sbjct: 356 RIEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 403
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 616 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 660
Query: 68 KIFIRFPKKWWPEDYQGF-------------HFFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 661 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 720
Query: 115 ADIMRLFRHFLGGAY---IIPEPIRIVRSVWSINPHFRGSY 152
I+ L G + +P+P V S W +P RGSY
Sbjct: 721 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 761
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 489
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 490 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 549
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 550 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 590
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 489
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 490 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 549
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 550 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 590
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 446 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 490
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 491 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 550
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 551 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 591
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 489
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 490 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 549
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 550 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 590
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 489
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 490 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 549
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 550 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 590
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 494 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 538
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 539 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 598
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 599 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 639
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 10 YSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTID 67
Y D +L T+ LGVLK + FVPPLP +A+ Q + FG ++
Sbjct: 498 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRMGFGNLN 542
Query: 68 KIFIRFPKKWWPEDYQGFH-------------FFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
K+ + F + +W F FW + L +A E +
Sbjct: 543 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 602
Query: 115 ADIM-RLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
I+ R G G+ +P+P V S W +P RGSY
Sbjct: 603 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 643
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 34.3 bits (77), Expect = 0.030, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 24/85 (28%)
Query: 6 DGTQYSADRILITVSLGVL------KSNL---ITFVPPLPPKNLNAIKGLAVETSVLYFV 56
DGT Y+AD ++ITV VL + NL I F PPL P +A
Sbjct: 240 DGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA-------------- 285
Query: 57 LFQGLAFGTIDKIFIRFPKKWWPED 81
F + FG + K+ F + W +
Sbjct: 286 -FDKIHFGALGKVIFEFEECCWSNE 309
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 3 GSADGTQYSADRILITVSLGVL------KSNL---ITFVPPLPPKNLNAIKGLAVETSVL 53
DGT Y+AD ++ITV VL + NL I F PPL P +A
Sbjct: 237 NCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA----------- 285
Query: 54 YFVLFQGLAFGTIDKIFIRFPKKWWPED 81
F + FG + K+ F + W +
Sbjct: 286 ----FDKIHFGALGKVIFEFEECCWSNE 309
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 3 GSADGTQYSADRILITVSLGVL------KSNL---ITFVPPLPPKNLNAIKGLAVETSVL 53
DGT Y+AD ++ITV VL + NL I F PPL P +A
Sbjct: 237 NCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA----------- 285
Query: 54 YFVLFQGLAFGTIDKIFIRFPKKWWPED 81
F + FG + K+ F + W +
Sbjct: 286 ----FDKIHFGALGKVIFEFEECCWSNE 309
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 3 GSADGTQYSADRILITVSLGVL------KSNL---ITFVPPLPPKNLNAIKGLAVETSVL 53
DGT Y+AD ++ITV VL + NL I F PPL P +A
Sbjct: 237 NCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA----------- 285
Query: 54 YFVLFQGLAFGTIDKIFIRFPKKWWPED 81
F + FG + K+ F + W +
Sbjct: 286 ----FDKIHFGALGKVIFEFEECCWSNE 309
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 3 GSADGTQYSADRILITVSLGVL------KSNL---ITFVPPLPPKNLNAIKGLAVETSVL 53
DGT Y+AD ++ITV VL + NL I F PPL P +A
Sbjct: 237 NCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA----------- 285
Query: 54 YFVLFQGLAFGTIDKIFIRFPKKWWPED 81
F + FG + K+ F + W +
Sbjct: 286 ----FDKIHFGALGKVIFEFEECCWSNE 309
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 11 SADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIF 70
+AD +++ + + I F PPLPPK +A++ + + KIF
Sbjct: 299 TADYVIVCTTSRAARR--IKFEPPLPPKKAHALRSVHYRSGT---------------KIF 341
Query: 71 IRFPKKWWPEDYQGFH 86
+ KK+W +D G H
Sbjct: 342 LTCTKKFWEDD--GIH 355
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
D + +AD +++ + + I F PPLPPK +A++ + +
Sbjct: 281 DTSSNTADYVIVCTTSRAARR--IQFEPPLPPKKQHALRSVHYRSGT------------- 325
Query: 66 IDKIFIRFPKKWWPEDYQGFH 86
KIF+ K+W +D G H
Sbjct: 326 --KIFLTCSSKFWEDD--GIH 342
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 11 SADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIF 70
+AD +++ + + I F PPLPPK +A++ + + KIF
Sbjct: 286 TADYVIVCTTSRATRR--IKFEPPLPPKKAHALRSVHYRSGT---------------KIF 328
Query: 71 IRFPKKWWPEDYQGFH 86
+ KK+W + +G H
Sbjct: 329 LTCTKKFWED--EGIH 342
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 11 SADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIF 70
+AD +++ + ++ LI F PPL PK +A++ + + KIF
Sbjct: 286 TADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGT---------------KIF 328
Query: 71 IRFPKKWWPEDYQGFH 86
+ K+W +D G H
Sbjct: 329 LTCTTKFWEDD--GIH 342
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFW-------TQHDEQTLFKDMAH 103
VLY ++ G+A+ +F+R P + P++ QG TQ Q + ++ H
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTH 596
>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
Length = 323
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 64 GTIDKIFIRFPKKWWPEDYQG 84
G I K+F+ P+K+ P DY G
Sbjct: 264 GAIRKVFVEHPEKFDPRDYLG 284
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 64 GTIDKIFIRFPKKWWPEDYQG 84
G I K+F+ P+K+ P DY G
Sbjct: 264 GAIRKVFVEHPEKFDPRDYLG 284
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 64 GTIDKIFIRFPKKWWPEDYQG 84
G I K+F+ P+K+ P DY G
Sbjct: 264 GAIRKVFVEHPEKFDPRDYLG 284
>pdb|2ILA|A Chain A, Structure Of Interleukin 1alpha At 2.7-Angstroms
Resolution
Length = 155
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 87 FFWTQHDEQTLFKDMAHPEIF 107
FFW H + F +AHP +F
Sbjct: 107 FFWETHGTKNYFTSVAHPNLF 127
>pdb|2KKI|A Chain A, Solution Structure Of Human Interleukin 1a
pdb|2L5X|A Chain A, Solution Structure Of Il1a-S100a13 Complex
pdb|2L5X|D Chain D, Solution Structure Of Il1a-S100a13 Complex
Length = 151
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 87 FFWTQHDEQTLFKDMAHPEIF 107
FFW H + F +AHP +F
Sbjct: 103 FFWETHGTKNYFTSVAHPNLF 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.145 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,840,940
Number of Sequences: 62578
Number of extensions: 185875
Number of successful extensions: 563
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 43
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)