Query psy10801
Match_columns 153
No_of_seqs 150 out of 1175
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:51:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0685|consensus 100.0 1.1E-31 2.4E-36 231.5 9.0 135 1-153 264-429 (498)
2 PLN02976 amine oxidase 99.9 9.3E-26 2E-30 214.2 12.5 134 2-153 976-1131(1713)
3 PLN02676 polyamine oxidase 99.9 7.1E-25 1.5E-29 192.0 13.9 133 2-153 265-419 (487)
4 PLN02568 polyamine oxidase 99.9 6E-24 1.3E-28 188.4 14.0 137 2-153 275-468 (539)
5 PLN03000 amine oxidase 99.9 9.1E-24 2E-28 194.6 14.6 136 2-153 411-567 (881)
6 PLN02529 lysine-specific histo 99.9 1.7E-22 3.7E-27 184.3 14.4 133 6-153 390-543 (738)
7 PLN02328 lysine-specific histo 99.9 5.6E-22 1.2E-26 182.1 14.1 133 4-153 468-623 (808)
8 KOG0029|consensus 99.9 1E-21 2.2E-26 173.0 12.6 134 2-153 250-404 (501)
9 PLN02268 probable polyamine ox 99.9 3.4E-21 7.3E-26 164.7 13.6 131 2-153 231-380 (435)
10 COG1231 Monoamine oxidase [Ami 99.8 1.4E-18 3E-23 150.0 10.3 132 2-152 241-392 (450)
11 PF01593 Amino_oxidase: Flavin 99.7 5E-16 1.1E-20 127.8 10.7 134 2-153 244-398 (450)
12 TIGR00562 proto_IX_ox protopor 99.0 2.9E-09 6.2E-14 91.5 11.1 121 2-144 258-403 (462)
13 PLN02576 protoporphyrinogen ox 98.8 7E-08 1.5E-12 84.0 12.1 126 5-150 278-437 (496)
14 PRK12416 protoporphyrinogen ox 98.7 1.9E-07 4.1E-12 80.8 11.3 120 2-147 259-408 (463)
15 TIGR03467 HpnE squalene-associ 98.7 3.2E-07 7E-12 77.0 11.6 119 5-147 236-368 (419)
16 PRK11883 protoporphyrinogen ox 98.6 5.2E-07 1.1E-11 76.9 11.5 118 2-145 254-397 (451)
17 TIGR02731 phytoene_desat phyto 98.3 4.3E-06 9.3E-11 72.1 9.9 124 2-149 250-402 (453)
18 PRK07233 hypothetical protein; 98.1 3.7E-05 8.1E-10 65.0 10.8 124 4-152 235-380 (434)
19 PLN02612 phytoene desaturase 98.0 4.1E-05 8.9E-10 68.7 10.0 62 2-80 345-406 (567)
20 PRK07208 hypothetical protein; 96.8 0.0047 1E-07 53.6 7.3 52 9-78 266-317 (479)
21 COG1232 HemY Protoporphyrinoge 96.7 0.022 4.8E-07 50.2 10.5 115 3-143 248-388 (444)
22 TIGR02733 desat_CrtD C-3',4' d 94.5 0.1 2.2E-06 45.6 6.1 36 8-45 279-314 (492)
23 PLN02487 zeta-carotene desatur 92.8 1.8 3.9E-05 39.3 11.3 51 6-75 343-395 (569)
24 TIGR02732 zeta_caro_desat caro 90.1 0.57 1.2E-05 41.2 5.1 49 8-75 269-319 (474)
25 TIGR02734 crtI_fam phytoene de 83.7 1.6 3.5E-05 38.2 4.2 25 2-26 255-279 (502)
26 COG3380 Predicted NAD/FAD-depe 81.3 1.9 4.1E-05 36.4 3.5 124 2-142 138-279 (331)
27 TIGR02730 carot_isom carotene 66.4 20 0.00044 31.4 6.4 21 2-22 265-285 (493)
28 KOG1276|consensus 58.8 74 0.0016 28.6 8.4 115 5-143 290-434 (491)
29 KOG2820|consensus 53.2 11 0.00023 32.9 2.2 21 1-21 190-210 (399)
30 PF13738 Pyr_redox_3: Pyridine 51.7 11 0.00024 28.1 2.0 19 2-20 117-135 (203)
31 PF01266 DAO: FAD dependent ox 37.7 21 0.00045 28.6 1.7 19 2-21 183-201 (358)
32 TIGR03197 MnmC_Cterm tRNA U-34 33.1 39 0.00084 28.3 2.6 20 2-21 169-188 (381)
33 COG0445 GidA Flavin-dependent 32.6 37 0.00081 31.3 2.5 20 2-21 137-156 (621)
34 COG0492 TrxB Thioredoxin reduc 31.7 35 0.00076 28.5 2.1 28 2-37 95-122 (305)
35 COG2081 Predicted flavoprotein 31.4 45 0.00097 29.4 2.7 18 2-19 146-163 (408)
36 PF08211 dCMP_cyt_deam_2: Cyti 30.5 64 0.0014 23.7 3.1 33 2-45 60-92 (124)
37 TIGR03169 Nterm_to_SelD pyridi 27.2 40 0.00088 27.9 1.8 18 2-19 86-103 (364)
38 PF01134 GIDA: Glucose inhibit 27.0 51 0.0011 28.8 2.4 20 2-21 131-150 (392)
39 PF08248 Tryp_FSAP: Tryptophyl 26.9 36 0.00078 14.9 0.7 7 74-80 1-7 (12)
40 COG0665 DadA Glycine/D-amino a 25.9 54 0.0012 27.0 2.3 19 2-21 192-210 (387)
41 TIGR01292 TRX_reduct thioredox 25.4 66 0.0014 25.3 2.6 19 2-20 91-109 (300)
42 COG2509 Uncharacterized FAD-de 25.1 62 0.0013 29.1 2.5 19 2-20 209-227 (486)
43 PLN02463 lycopene beta cyclase 24.4 66 0.0014 28.3 2.6 18 2-19 148-165 (447)
44 COG0287 TyrA Prephenate dehydr 22.2 45 0.00098 27.6 1.1 53 10-65 63-127 (279)
45 PRK07846 mycothione reductase; 22.2 79 0.0017 27.5 2.7 18 2-19 119-136 (451)
46 PF03807 F420_oxidored: NADP o 21.9 61 0.0013 21.3 1.5 15 12-26 62-76 (96)
47 PTZ00363 rab-GDP dissociation 21.7 81 0.0018 27.8 2.6 19 2-20 269-287 (443)
48 TIGR02352 thiamin_ThiO glycine 21.7 83 0.0018 25.2 2.6 20 2-22 173-192 (337)
49 TIGR01790 carotene-cycl lycope 21.3 85 0.0018 26.1 2.6 21 2-22 120-140 (388)
50 PRK06847 hypothetical protein; 20.5 89 0.0019 25.7 2.6 20 2-21 142-161 (375)
No 1
>KOG0685|consensus
Probab=99.97 E-value=1.1e-31 Score=231.48 Aligned_cols=135 Identities=41% Similarity=0.799 Sum_probs=117.2
Q ss_pred CEEccCCCEEEcCEEEEecChHHHhhCC-ccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCC
Q psy10801 1 MDGSADGTQYSADRILITVSLGVLKSNL-ITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWP 79 (153)
Q Consensus 1 ~V~t~~G~~~~ad~vIvTvPl~vLk~~~-i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~ 79 (153)
+|+|+||+++.||+|||||||||||+.+ --|.|+||..|++||++ +++|+.+||||+|+++||+
T Consensus 264 ~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~---------------lgfGtv~KiFLE~E~pfwp 328 (498)
T KOG0685|consen 264 KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIER---------------LGFGTVNKIFLEFEEPFWP 328 (498)
T ss_pred EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHh---------------ccCCccceEEEEccCCCCC
Confidence 4789999999999999999999999743 37999999999999999 9999999999999999999
Q ss_pred CCCCceEEEeccCCcccccc--CCCc----------------------------ccccccHHHHHHHHHHHHHHHhCCCC
Q psy10801 80 EDYQGFHFFWTQHDEQTLFK--DMAH----------------------------PEIFDFEKVLQADIMRLFRHFLGGAY 129 (153)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~--~~~~----------------------------~~l~~f~~~~~~~~~~~L~~~~g~~~ 129 (153)
.+.+++.++|.+.+...+.. +.|. ..+++ +++++.++..|++++++.
T Consensus 329 ~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsd--Eev~e~~~~~lr~fl~n~- 405 (498)
T KOG0685|consen 329 SDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSD--EEVLEGLTKLLRKFLKNP- 405 (498)
T ss_pred CCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCH--HHHHHHHHHHHHHhcCCC-
Confidence 99999999999887221110 1111 12333 889999999999999976
Q ss_pred CCCCCeEEEEecCCCCCCCCcCCC
Q psy10801 130 IIPEPIRIVRSVWSINPHFRGSYR 153 (153)
Q Consensus 130 ~~~~p~~~~~~~W~~dp~~~Gsys 153 (153)
.+|+|.++.+++|.+|||+|||||
T Consensus 406 ~iP~p~kilRs~W~snp~frGSYS 429 (498)
T KOG0685|consen 406 EIPKPKKILRSQWISNPFFRGSYS 429 (498)
T ss_pred CCCCchhhhhhcccCCCccCceee
Confidence 899999999999999999999997
No 2
>PLN02976 amine oxidase
Probab=99.93 E-value=9.3e-26 Score=214.15 Aligned_cols=134 Identities=28% Similarity=0.579 Sum_probs=107.2
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|+|.+|++|.||+||||||+++|+.+.|.|.|+||++|++||++ ++||..+||+|+|+++||+++
T Consensus 976 VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqr---------------LgfG~lnKV~LeFdrpFW~~d 1040 (1713)
T PLN02976 976 VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQR---------------LGFGVLNKVVLEFPEVFWDDS 1040 (1713)
T ss_pred EEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHh---------------hccccceEEEEEeCCccccCC
Confidence 67899999999999999999999987899999999999999999 999999999999999999876
Q ss_pred CCceEEEeccCCc----------------cccccCCCc------ccccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEE
Q psy10801 82 YQGFHFFWTQHDE----------------QTLFKDMAH------PEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVR 139 (153)
Q Consensus 82 ~~~~~~~~~~~~~----------------~~~~~~~~~------~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~ 139 (153)
..+++..|++.+. ..+.+..+. ..+.+ +++++.+++.|+++||+. .+++|+.+.+
T Consensus 1041 ~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSD--EE~Ve~ALe~LrKlFG~~-~iPdPv~~vv 1117 (1713)
T PLN02976 1041 VDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSS--SDHVNHALMVLRKLFGEA-LVPDPVASVV 1117 (1713)
T ss_pred CCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCH--HHHHHHHHHHHHHHcCcc-cccCcceeEE
Confidence 4444433322110 001100000 01222 788899999999999965 5789999999
Q ss_pred ecCCCCCCCCcCCC
Q psy10801 140 SVWSINPHFRGSYR 153 (153)
Q Consensus 140 ~~W~~dp~~~Gsys 153 (153)
++|..|||++||||
T Consensus 1118 TrWssDPySrGSYS 1131 (1713)
T PLN02976 1118 TDWGRDPFSYGAYS 1131 (1713)
T ss_pred ecCCCCCCcCcccc
Confidence 99999999999996
No 3
>PLN02676 polyamine oxidase
Probab=99.92 E-value=7.1e-25 Score=191.97 Aligned_cols=133 Identities=35% Similarity=0.672 Sum_probs=104.4
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|+|.+|++++||+||||+|+++|+++.|.|+|+||+.|++||++ ++||..+||+++|+++||+++
T Consensus 265 V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~---------------l~~g~~~Kv~l~f~~~FW~~~ 329 (487)
T PLN02676 265 VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQ---------------FDMAVYTKIFLKFPYKFWPSG 329 (487)
T ss_pred EEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHh---------------CCceeeEEEEEEeCCCCCCCC
Confidence 78899999999999999999999987899999999999999999 999999999999999999874
Q ss_pred CCceEEEeccCC-----------cc-----ccccCCCc------ccccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEE
Q psy10801 82 YQGFHFFWTQHD-----------EQ-----TLFKDMAH------PEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVR 139 (153)
Q Consensus 82 ~~~~~~~~~~~~-----------~~-----~~~~~~~~------~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~ 139 (153)
.....+.+.+.+ .. .+...... ..+.+ +++++.++++|+++||. .+++|+.+..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~--e~~~~~vl~~L~~~~g~--~~~~p~~~~~ 405 (487)
T PLN02676 330 PGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPD--SETKAEIMEVLRKMFGP--NIPEATDILV 405 (487)
T ss_pred CCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCH--HHHHHHHHHHHHHHhCC--CCCCcceEEe
Confidence 222111221111 00 00000000 01222 77889999999999986 5889999999
Q ss_pred ecCCCCCCCCcCCC
Q psy10801 140 SVWSINPHFRGSYR 153 (153)
Q Consensus 140 ~~W~~dp~~~Gsys 153 (153)
++|++|||++|||+
T Consensus 406 ~~W~~dp~s~Gsys 419 (487)
T PLN02676 406 PRWWSNRFFKGSYS 419 (487)
T ss_pred cccCCCCCCCcccC
Confidence 99999999999996
No 4
>PLN02568 polyamine oxidase
Probab=99.91 E-value=6e-24 Score=188.37 Aligned_cols=137 Identities=26% Similarity=0.463 Sum_probs=105.0
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhC----CccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSN----LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKW 77 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~----~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~f 77 (153)
|+|++|++++||+||+|+|+++|+++ .|.|.|+||+.|++||++ ++||..+||+++|+++|
T Consensus 275 V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~---------------l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 275 LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISR---------------LGFGVVNKLFVELSPRP 339 (539)
T ss_pred EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHh---------------cCCceeeEEEEEecCCC
Confidence 67889999999999999999999964 478999999999999999 99999999999999999
Q ss_pred CCC-----CCCceEEEeccCCccc--------------ccc-CCCcccccccH-------------HHHHHHHHHHHHHH
Q psy10801 78 WPE-----DYQGFHFFWTQHDEQT--------------LFK-DMAHPEIFDFE-------------KVLQADIMRLFRHF 124 (153)
Q Consensus 78 W~~-----~~~~~~~~~~~~~~~~--------------~~~-~~~~~~l~~f~-------------~~~~~~~~~~L~~~ 124 (153)
|.+ +...+.++|...+... +.. ..-.+.|.+|. +++++.+++.|+++
T Consensus 340 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~ 419 (539)
T PLN02568 340 DGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSF 419 (539)
T ss_pred CCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 865 2233455655433200 000 00011222221 78999999999999
Q ss_pred hCCCCC--------------------CCCCeEEEEecCCCCCCCCcCCC
Q psy10801 125 LGGAYI--------------------IPEPIRIVRSVWSINPHFRGSYR 153 (153)
Q Consensus 125 ~g~~~~--------------------~~~p~~~~~~~W~~dp~~~Gsys 153 (153)
||.... .++|++++.++|++|||++||||
T Consensus 420 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 420 LKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred cCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 985311 25799999999999999999997
No 5
>PLN03000 amine oxidase
Probab=99.91 E-value=9.1e-24 Score=194.56 Aligned_cols=136 Identities=29% Similarity=0.565 Sum_probs=105.2
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|+|. +++|+||+||||+|++||+++.|.|.|+||++|++||++ ++||..+||++.|+++||+++
T Consensus 411 V~~~-~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~r---------------L~~G~l~KViL~Fd~~FW~~d 474 (881)
T PLN03000 411 VIAG-NQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKR---------------LGFGLLNKVAMLFPYVFWSTD 474 (881)
T ss_pred EEEC-CcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHc---------------CCCcceEEEEEEeCCccccCC
Confidence 4444 358999999999999999988899999999999999999 999999999999999999887
Q ss_pred CCceEEEeccCCcc-c--cc-c--C-CCccccccc------------H-HHHHHHHHHHHHHHhCCC-CCCCCCeEEEEe
Q psy10801 82 YQGFHFFWTQHDEQ-T--LF-K--D-MAHPEIFDF------------E-KVLQADIMRLFRHFLGGA-YIIPEPIRIVRS 140 (153)
Q Consensus 82 ~~~~~~~~~~~~~~-~--~~-~--~-~~~~~l~~f------------~-~~~~~~~~~~L~~~~g~~-~~~~~p~~~~~~ 140 (153)
...++.++++.... . .. . . .-.+.|..| . +++++.++++|+++||.. ..+++|+.+.++
T Consensus 475 ~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivt 554 (881)
T PLN03000 475 LDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCT 554 (881)
T ss_pred CCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEc
Confidence 55565554332211 0 00 0 0 000111111 1 788999999999999742 146899999999
Q ss_pred cCCCCCCCCcCCC
Q psy10801 141 VWSINPHFRGSYR 153 (153)
Q Consensus 141 ~W~~dp~~~Gsys 153 (153)
+|..|||++||||
T Consensus 555 rW~~DPysrGSYS 567 (881)
T PLN03000 555 RWGGDPFSLGSYS 567 (881)
T ss_pred cCCCCCCCCcccc
Confidence 9999999999997
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=99.89 E-value=1.7e-22 Score=184.33 Aligned_cols=133 Identities=30% Similarity=0.602 Sum_probs=102.0
Q ss_pred CCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCCCCce
Q psy10801 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGF 85 (153)
Q Consensus 6 ~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~~~~~ 85 (153)
+|++++||+||||||+++|++..|.|.|+||++|++||++ ++||..+||++.|+++||+++...+
T Consensus 390 ~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~r---------------L~yG~v~KV~L~F~~~FW~~~~~~f 454 (738)
T PLN02529 390 GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDR---------------LGFGLLNKVAMVFPSVFWGEELDTF 454 (738)
T ss_pred CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHc---------------CCCceeEEEEEEeCCccccCCCCce
Confidence 4568999999999999999987899999999999999999 9999999999999999998764445
Q ss_pred EEEeccCCcc-c--cc-c---CCCccccccc------------H-HHHHHHHHHHHHHHhCCC-CCCCCCeEEEEecCCC
Q psy10801 86 HFFWTQHDEQ-T--LF-K---DMAHPEIFDF------------E-KVLQADIMRLFRHFLGGA-YIIPEPIRIVRSVWSI 144 (153)
Q Consensus 86 ~~~~~~~~~~-~--~~-~---~~~~~~l~~f------------~-~~~~~~~~~~L~~~~g~~-~~~~~p~~~~~~~W~~ 144 (153)
+.++...... . .. . ..-.+.+..| . +++++.+++.|+++||.. ..+++|+.+..++|.+
T Consensus 455 G~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~ 534 (738)
T PLN02529 455 GCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGS 534 (738)
T ss_pred EEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCc
Confidence 4443221110 0 00 0 0000111111 1 688999999999999842 1467999999999999
Q ss_pred CCCCCcCCC
Q psy10801 145 NPHFRGSYR 153 (153)
Q Consensus 145 dp~~~Gsys 153 (153)
|||++||||
T Consensus 535 DP~s~GsYS 543 (738)
T PLN02529 535 DPLSYGSYS 543 (738)
T ss_pred CCCCCCCcc
Confidence 999999997
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.88 E-value=5.6e-22 Score=182.11 Aligned_cols=133 Identities=26% Similarity=0.518 Sum_probs=105.0
Q ss_pred ccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCCCC
Q psy10801 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQ 83 (153)
Q Consensus 4 t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~~~ 83 (153)
+.+|++++||+||||+|+++|+++.|.|.|+||++|++||++ ++||..+||++.|+++||+.+..
T Consensus 468 ~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~---------------l~yG~~~KV~L~F~~~FW~~~~d 532 (808)
T PLN02328 468 YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQR---------------LGYGLLNKVALLFPYNFWGGEID 532 (808)
T ss_pred EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHc---------------CCCcceEEEEEEeCCccccCCCC
Confidence 567889999999999999999988899999999999999999 99999999999999999987655
Q ss_pred ceEEEeccCCccc----------------cccCCCc------ccccccHHHHHHHHHHHHHHHhCCC-CCCCCCeEEEEe
Q psy10801 84 GFHFFWTQHDEQT----------------LFKDMAH------PEIFDFEKVLQADIMRLFRHFLGGA-YIIPEPIRIVRS 140 (153)
Q Consensus 84 ~~~~~~~~~~~~~----------------~~~~~~~------~~l~~f~~~~~~~~~~~L~~~~g~~-~~~~~p~~~~~~ 140 (153)
.++.++++..... +....+. ..+.+ +++++.++++|+++||.. ..+++|+.+..+
T Consensus 533 ~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsd--eE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vt 610 (808)
T PLN02328 533 TFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSP--VESVKRVLQILRGIFHPKGIVVPDPVQAVCT 610 (808)
T ss_pred ceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCH--HHHHHHHHHHHHHHhCcccccccCcceEEEe
Confidence 5555543221110 0000000 01222 778899999999999842 136799999999
Q ss_pred cCCCCCCCCcCCC
Q psy10801 141 VWSINPHFRGSYR 153 (153)
Q Consensus 141 ~W~~dp~~~Gsys 153 (153)
+|..|||++|||+
T Consensus 611 rW~~DP~s~GSYS 623 (808)
T PLN02328 611 RWGKDCFTYGSYS 623 (808)
T ss_pred cCCCCCCcCCCCC
Confidence 9999999999996
No 8
>KOG0029|consensus
Probab=99.87 E-value=1e-21 Score=172.97 Aligned_cols=134 Identities=32% Similarity=0.633 Sum_probs=104.9
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|+..+|..|+||+||||+|++||+.+.|.|.|+||.+|.+||++ +++|..+||++.|+.+||+.+
T Consensus 250 ~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~---------------lg~g~~~Kv~l~F~~~fW~~~ 314 (501)
T KOG0029|consen 250 VTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDR---------------LGFGLVNKVILEFPRVFWDQD 314 (501)
T ss_pred EEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHh---------------cCCCceeEEEEEeccccCCCC
Confidence 34456666999999999999999999999999999999999999 999999999999999999755
Q ss_pred CCceEEE------------eccCCccc---cccC-CC-----cccccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEe
Q psy10801 82 YQGFHFF------------WTQHDEQT---LFKD-MA-----HPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRS 140 (153)
Q Consensus 82 ~~~~~~~------------~~~~~~~~---~~~~-~~-----~~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~ 140 (153)
..-++.. |+-.+... +... .+ ...+.+ +++++.+|.+|+++|+.. .+++|+++.++
T Consensus 315 ~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~k~f~~~-~~~~p~~~~vt 391 (501)
T KOG0029|consen 315 IDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSD--SEIVKKAMKLLRKVFGSE-EVPDPLDALVT 391 (501)
T ss_pred cCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCH--HHHHHHHHHHHHHHhccC-cCCCccceeee
Confidence 3333322 22221110 0000 00 012233 889999999999999954 79999999999
Q ss_pred cCCCCCCCCcCCC
Q psy10801 141 VWSINPHFRGSYR 153 (153)
Q Consensus 141 ~W~~dp~~~Gsys 153 (153)
+|+.|+++.|+|+
T Consensus 392 ~w~~d~~~~gsys 404 (501)
T KOG0029|consen 392 RWGTDPLSGGSYS 404 (501)
T ss_pred eecccccCCcccc
Confidence 9999999999996
No 9
>PLN02268 probable polyamine oxidase
Probab=99.86 E-value=3.4e-21 Score=164.74 Aligned_cols=131 Identities=29% Similarity=0.473 Sum_probs=101.6
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|++.+|+++.||+||+|+|+++|++..|.|.|+||+.|+++|++ ++||...|+++.|+++||++.
T Consensus 231 v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~---------------~~~g~~~Kv~l~f~~~fw~~~ 295 (435)
T PLN02268 231 VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISD---------------LGVGIENKIALHFDSVFWPNV 295 (435)
T ss_pred EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHh---------------CCccceeEEEEEeCCCCCCCC
Confidence 67888989999999999999999877799999999999999999 999999999999999999864
Q ss_pred CCceEEEec---------cCCcc----cccc---CCCcc---cccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEecC
Q psy10801 82 YQGFHFFWT---------QHDEQ----TLFK---DMAHP---EIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVW 142 (153)
Q Consensus 82 ~~~~~~~~~---------~~~~~----~~~~---~~~~~---~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~~W 142 (153)
..++.+.. ..... .+.. ..... .+.+ +++++.+++.|+++||. .++|+.+..++|
T Consensus 296 -~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~--~e~~~~v~~~L~~~~~~---~~~p~~~~~~~W 369 (435)
T PLN02268 296 -EFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSD--EAAANFAMSQLKKMLPD---ATEPVQYLVSRW 369 (435)
T ss_pred -ceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCH--HHHHHHHHHHHHHHcCC---CCCccEEEeccc
Confidence 11222111 11000 0100 00001 1222 78999999999999974 568999999999
Q ss_pred CCCCCCCcCCC
Q psy10801 143 SINPHFRGSYR 153 (153)
Q Consensus 143 ~~dp~~~Gsys 153 (153)
..|||++|+|+
T Consensus 370 ~~dp~~~G~~~ 380 (435)
T PLN02268 370 GSDPNSLGCYS 380 (435)
T ss_pred CCCCCCCccCC
Confidence 99999999996
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.77 E-value=1.4e-18 Score=149.98 Aligned_cols=132 Identities=24% Similarity=0.382 Sum_probs=100.1
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|+|.+.++|.||+||||+|+.+|. .|+|+|+||+.+++|++. ..||..+|+.++|++|||+++
T Consensus 241 Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~---------------~~y~~~~K~~v~f~rpFWee~ 303 (450)
T COG1231 241 VTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKG---------------VPYGSATKIGVAFSRPFWEEA 303 (450)
T ss_pred EEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcC---------------cCcchheeeeeecCchhhhhc
Confidence 667775799999999999999996 499999999999999999 999999999999999999876
Q ss_pred C--CceEE-------EeccCC-ccc----ccc-CCCcc---cccccH-HHHHHHHHHHHHHHhCCCCCCCCCeEE-EEec
Q psy10801 82 Y--QGFHF-------FWTQHD-EQT----LFK-DMAHP---EIFDFE-KVLQADIMRLFRHFLGGAYIIPEPIRI-VRSV 141 (153)
Q Consensus 82 ~--~~~~~-------~~~~~~-~~~----~~~-~~~~~---~l~~f~-~~~~~~~~~~L~~~~g~~~~~~~p~~~-~~~~ 141 (153)
. .|..+ ++.++. ... +.+ ..+.. .+.++. +++++.++..|.++||+ +..++.+. ...+
T Consensus 304 ~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~--~a~~~f~~~~~~~ 381 (450)
T COG1231 304 GILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGD--EAADPFDYGASVD 381 (450)
T ss_pred ccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCCh--hhccccccceeee
Confidence 4 33322 221111 110 111 11111 223333 88999999999999997 36666666 9999
Q ss_pred CCCCCCCCcCC
Q psy10801 142 WSINPHFRGSY 152 (153)
Q Consensus 142 W~~dp~~~Gsy 152 (153)
|+.|||+.|+|
T Consensus 382 W~~dpwt~G~~ 392 (450)
T COG1231 382 WSKDPWTLGGT 392 (450)
T ss_pred cccCCcCCccc
Confidence 99999999955
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.66 E-value=5e-16 Score=127.79 Aligned_cols=134 Identities=31% Similarity=0.588 Sum_probs=100.9
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|++.||++++||+||||+|+++|++ |.|.|+||+.++++|++ ++++...||++.|+.+||+.+
T Consensus 244 v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~---------------~~~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 244 VTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIEN---------------LPYSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp EEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHT---------------EEEEEEEEEEEEESSGGGGST
T ss_pred cccccceEEecceeeecCchhhhhh--hhhcccccccccccccc---------------cccCcceeEEEeeeccccccc
Confidence 6788999999999999999999986 89999999999999999 999999999999999999886
Q ss_pred CCceEEEeccCCcc-c-c---------ccC-C---Cc-----ccccccH-HHHHHHHHHHHHHHhCCCCCCCCCeEEEEe
Q psy10801 82 YQGFHFFWTQHDEQ-T-L---------FKD-M---AH-----PEIFDFE-KVLQADIMRLFRHFLGGAYIIPEPIRIVRS 140 (153)
Q Consensus 82 ~~~~~~~~~~~~~~-~-~---------~~~-~---~~-----~~l~~f~-~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~ 140 (153)
....+.++.+.... . . .+. . +. ..+.+.. +++++.+++.|+++++.. ..++|.++.++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~-~~~~~~~~~~~ 385 (450)
T PF01593_consen 307 IDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGA-SIPDPIDITVT 385 (450)
T ss_dssp TTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTG-GGGEESEEEEE
T ss_pred ccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccc-ccccccccccc
Confidence 33333333322100 0 0 000 0 00 0111111 779999999999999953 57899999999
Q ss_pred cCCCCCCCCcCCC
Q psy10801 141 VWSINPHFRGSYR 153 (153)
Q Consensus 141 ~W~~dp~~~Gsys 153 (153)
+|..+||.+|+|+
T Consensus 386 ~w~~~~~~~~~~~ 398 (450)
T PF01593_consen 386 RWSRDPYPRGSYS 398 (450)
T ss_dssp ECTTSTTTSSSCE
T ss_pred ccccccccccccc
Confidence 9999999999884
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.02 E-value=2.9e-09 Score=91.54 Aligned_cols=121 Identities=13% Similarity=0.238 Sum_probs=86.1
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|++.+|+++.||+||+|+|+..+.. +.|++|+.+.+++++ +.++...|+.+.|++++|+..
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~---------------l~~~~~~~v~l~~~~~~~~~~ 318 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDK---------------IHSPPVANVNLGFPEGSVDGE 318 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhc---------------CCCCceEEEEEEEchHHcCCC
Confidence 5677888999999999999999864 458899999999999 999999999999999999765
Q ss_pred CCceEEEeccCCcc---------------cccc---------CCCcccccccH-HHHHHHHHHHHHHHhCCCCCCCCCeE
Q psy10801 82 YQGFHFFWTQHDEQ---------------TLFK---------DMAHPEIFDFE-KVLQADIMRLFRHFLGGAYIIPEPIR 136 (153)
Q Consensus 82 ~~~~~~~~~~~~~~---------------~~~~---------~~~~~~l~~f~-~~~~~~~~~~L~~~~g~~~~~~~p~~ 136 (153)
..+++++....... ...+ ..+...+.... +++++.+++.|++++|-+ .+|..
T Consensus 319 ~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~---~~p~~ 395 (462)
T TIGR00562 319 LEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNIN---NEPEM 395 (462)
T ss_pred CCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCC---CCCcE
Confidence 44444433211100 0000 00001111111 789999999999999742 24888
Q ss_pred EEEecCCC
Q psy10801 137 IVRSVWSI 144 (153)
Q Consensus 137 ~~~~~W~~ 144 (153)
...++|..
T Consensus 396 ~~v~rw~~ 403 (462)
T TIGR00562 396 LCVTRWHR 403 (462)
T ss_pred EEEeEccc
Confidence 89999964
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=98.80 E-value=7e-08 Score=84.00 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=84.8
Q ss_pred cCCC-EEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCC---
Q psy10801 5 ADGT-QYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPE--- 80 (153)
Q Consensus 5 ~~G~-~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~--- 80 (153)
.+|+ ++.||+||+|+|+.+++. +. +++++..++++++ +.+....++.+.|++++|+.
T Consensus 278 ~~g~~~~~ad~VI~a~P~~~l~~--ll--~~~~~~~~~~l~~---------------~~~~~~~~v~l~~~~~~~~~~~~ 338 (496)
T PLN02576 278 PEGKVNVTAKAVVMTAPLYVVSE--ML--RPKSPAAADALPE---------------FYYPPVAAVTTSYPKEAVKRERL 338 (496)
T ss_pred CCCceeEEeCEEEECCCHHHHHH--Hh--cccCHHHHHHhcc---------------CCCCceEEEEEEEchHHcccccc
Confidence 3564 699999999999999986 33 3466778899999 99999999999999999976
Q ss_pred ---CCCceEEEeccCCc-c------------c--cccC---------CCcccccccH-HHHHHHHHHHHHHHhCCCCCCC
Q psy10801 81 ---DYQGFHFFWTQHDE-Q------------T--LFKD---------MAHPEIFDFE-KVLQADIMRLFRHFLGGAYIIP 132 (153)
Q Consensus 81 ---~~~~~~~~~~~~~~-~------------~--~~~~---------~~~~~l~~f~-~~~~~~~~~~L~~~~g~~~~~~ 132 (153)
...+++.++..... . . ..+. .....+.... +++++.+++.|++++|.. ..+
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~-~~~ 417 (496)
T PLN02576 339 IDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKP-GAP 417 (496)
T ss_pred cCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCC-CCC
Confidence 33455443321110 0 0 0000 0001111111 889999999999999864 445
Q ss_pred CCeEEEEecCCCC--CCCCc
Q psy10801 133 EPIRIVRSVWSIN--PHFRG 150 (153)
Q Consensus 133 ~p~~~~~~~W~~d--p~~~G 150 (153)
+|.....++|... .|..|
T Consensus 418 ~p~~~~~~~w~~a~P~~~~g 437 (496)
T PLN02576 418 PPKVVGVRVWPKAIPQYLLG 437 (496)
T ss_pred CCcEEEEeEcCcccCCCCcC
Confidence 7777888999863 35554
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.70 E-value=1.9e-07 Score=80.75 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=82.1
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~ 81 (153)
|++.+|+++.||+||+|+|+.++.. +.+.|+|++ .+++ +.+....|+++.|++++|.-.
T Consensus 259 v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~~----~~~~---------------~~~~~~~~v~l~~~~~~~~~~ 317 (463)
T PRK12416 259 ISFANHESIQADYVVLAAPHDIAET--LLQSNELNE----QFHT---------------FKNSSLISIYLGFDILDEQLP 317 (463)
T ss_pred EEECCCCEEEeCEEEECCCHHHHHh--hcCCcchhH----HHhc---------------CCCCceEEEEEEechhhcCCC
Confidence 5677888999999999999999964 778888764 3566 777899999999998877433
Q ss_pred CCceEEEeccCCc------------------c--ccc----c--CCCc---ccccccHHHHHHHHHHHHHHHhCCCCCCC
Q psy10801 82 YQGFHFFWTQHDE------------------Q--TLF----K--DMAH---PEIFDFEKVLQADIMRLFRHFLGGAYIIP 132 (153)
Q Consensus 82 ~~~~~~~~~~~~~------------------~--~~~----~--~~~~---~~l~~f~~~~~~~~~~~L~~~~g~~~~~~ 132 (153)
..+++++-.+... . .+. + .... ..+.+ +++.+.+++.|+++||- ..
T Consensus 318 ~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d--ee~~~~~~~~L~~~lG~---~~ 392 (463)
T PRK12416 318 ADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSE--EELVRVALYDIEKSLGI---KG 392 (463)
T ss_pred CCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCH--HHHHHHHHHHHHHHhCC---CC
Confidence 3344333211110 0 000 0 0000 11223 88899999999999985 35
Q ss_pred CCeEEEEecCCC-CCC
Q psy10801 133 EPIRIVRSVWSI-NPH 147 (153)
Q Consensus 133 ~p~~~~~~~W~~-dp~ 147 (153)
+|+.+..++|.. .|.
T Consensus 393 ~p~~~~v~~W~~a~P~ 408 (463)
T PRK12416 393 EPEVVEVTNWKDLMPK 408 (463)
T ss_pred CceEEEEEEccccCCC
Confidence 899999999973 664
No 15
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.67 E-value=3.2e-07 Score=76.99 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=75.8
Q ss_pred cCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCCC-C
Q psy10801 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDY-Q 83 (153)
Q Consensus 5 ~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~~-~ 83 (153)
.+|+++.||+||+|+|+.+++. + .|+ +.+.+++++ +.++...|+++.|+++||.+.. .
T Consensus 236 ~~g~~~~~d~vi~a~p~~~~~~--l--l~~--~~~~~~l~~---------------~~~~~~~~v~l~~~~~~~~~~~~~ 294 (419)
T TIGR03467 236 SGGETLPADAVVLAVPPRHAAS--L--LPG--EDLGALLTA---------------LGYSPITTVHLRLDRAVRLPAPMV 294 (419)
T ss_pred cCCccccCCEEEEcCCHHHHHH--h--CCC--chHHHHHhh---------------cCCcceEEEEEEeCCCcCCCCCee
Confidence 4678899999999999999975 3 232 257788888 9999999999999999985431 1
Q ss_pred c-----eEEEeccCCcc---ccc----c-CCCcccccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEecCCCCCC
Q psy10801 84 G-----FHFFWTQHDEQ---TLF----K-DMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPH 147 (153)
Q Consensus 84 ~-----~~~~~~~~~~~---~~~----~-~~~~~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~~W~~dp~ 147 (153)
+ ...++...... ... + ........+ +++++.+++.|+++||.. ....++.....+|....|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 368 (419)
T TIGR03467 295 GLVGGLAQWLFDRGQLAGEPGYLAVVISAARDLVDLPR--EELADRIVAELRRAFPRV-AGAKPLWARVIKEKRATF 368 (419)
T ss_pred eecCCceeEEEECCcCCCCCCEEEEEEecchhhccCCH--HHHHHHHHHHHHHhcCcc-ccCCccceEEEEccCCcc
Confidence 1 11111111110 000 0 000011222 788999999999999863 234566666666655444
No 16
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.61 E-value=5.2e-07 Score=76.91 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=78.5
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCC-CC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWW-PE 80 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW-~~ 80 (153)
|++++|+++.||+||+|+|+.+++. +.+. +...+++++ +.++...|+++.|+++|+ ..
T Consensus 254 v~~~~g~~~~~d~vI~a~p~~~~~~--l~~~----~~~~~~~~~---------------~~~~~~~~v~l~~~~~~~~~~ 312 (451)
T PRK11883 254 IVLSNGGEIEADAVIVAVPHPVLPS--LFVA----PPAFALFKT---------------IPSTSVATVALAFPESATNLP 312 (451)
T ss_pred EEECCCCEEEcCEEEECCCHHHHHH--hccC----hhHHHHHhC---------------CCCCceEEEEEEeccccCCCC
Confidence 4677899999999999999999986 4332 345688888 999999999999999863 22
Q ss_pred CCCce-----------EEEeccCC--ccccccC--------CCc----ccccccHHHHHHHHHHHHHHHhCCCCCCCCCe
Q psy10801 81 DYQGF-----------HFFWTQHD--EQTLFKD--------MAH----PEIFDFEKVLQADIMRLFRHFLGGAYIIPEPI 135 (153)
Q Consensus 81 ~~~~~-----------~~~~~~~~--~~~~~~~--------~~~----~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~ 135 (153)
+..++ ...|+... .....+. .+. ....+ +++++.+++.|++++|. ..+|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~g~---~~~~~ 387 (451)
T PRK11883 313 DGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATD--EELVAFVLADLSKVMGI---TGDPE 387 (451)
T ss_pred CceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCH--HHHHHHHHHHHHHHhCC---CCCce
Confidence 22221 11122111 0000000 010 11222 78999999999999985 23678
Q ss_pred EEEEecCCCC
Q psy10801 136 RIVRSVWSIN 145 (153)
Q Consensus 136 ~~~~~~W~~d 145 (153)
.+..++|...
T Consensus 388 ~~~~~rw~~a 397 (451)
T PRK11883 388 FTIVQRWKEA 397 (451)
T ss_pred EEEEeecCcc
Confidence 8999999864
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.32 E-value=4.3e-06 Score=72.13 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=78.3
Q ss_pred EEccCCC-----EEEcCEEEEecChHHHhhCCccccCC-Cc-HHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeC
Q psy10801 2 DGSADGT-----QYSADRILITVSLGVLKSNLITFVPP-LP-PKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFP 74 (153)
Q Consensus 2 V~t~~G~-----~~~ad~vIvTvPl~vLk~~~i~F~P~-Lp-~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~ 74 (153)
|++.+|+ ++.||+||+|+|+..+.. + -|+ ++ ....+.+++ +.++...|+.+.|+
T Consensus 250 v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~--l--L~~~~~~~~~~~~~~~---------------~~~~~~~~v~l~~~ 310 (453)
T TIGR02731 250 FVLADGEGQRRFEVTADAYVSAMPVDIFKL--L--LPQPWKQMPFFQKLNG---------------LEGVPVINVHIWFD 310 (453)
T ss_pred EEEecCCCCceeEEECCEEEEcCCHHHHHh--h--CchhhhcCHHHHHhhc---------------CCCCcEEEEEEEEc
Confidence 3455555 799999999999998864 3 132 21 223445555 67789999999999
Q ss_pred CCCCCCCCCceEEEeccC---------------Cc-ccccc------CCCcccccccHHHHHHHHHHHHHHHhCCCCCCC
Q psy10801 75 KKWWPEDYQGFHFFWTQH---------------DE-QTLFK------DMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIP 132 (153)
Q Consensus 75 ~~fW~~~~~~~~~~~~~~---------------~~-~~~~~------~~~~~~l~~f~~~~~~~~~~~L~~~~g~~~~~~ 132 (153)
+++|... ++.+..... ++ ..+.. ..+ ..+.+ +++++.+++.|+++||+.....
T Consensus 311 ~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--ee~~~~v~~~L~~~~~~~~~~~ 385 (453)
T TIGR02731 311 RKLTTVD--HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADW-IGRSD--EEIIDATMAELAKLFPNHIKAD 385 (453)
T ss_pred cccCCCC--ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhh-hcCCH--HHHHHHHHHHHHHhCCcccCCC
Confidence 9988643 111111110 00 00000 000 11223 8899999999999998620123
Q ss_pred CCeEEEEecCCCCCCCC
Q psy10801 133 EPIRIVRSVWSINPHFR 149 (153)
Q Consensus 133 ~p~~~~~~~W~~dp~~~ 149 (153)
++.++..++|..+||+.
T Consensus 386 ~~~~~~~~~~~~~p~a~ 402 (453)
T TIGR02731 386 SPAKILKYKVVKTPRSV 402 (453)
T ss_pred CCceEEEEEEEECCCce
Confidence 67888999999999984
No 18
>PRK07233 hypothetical protein; Provisional
Probab=98.09 E-value=3.7e-05 Score=65.02 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=75.2
Q ss_pred ccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCC----CCC
Q psy10801 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKK----WWP 79 (153)
Q Consensus 4 t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~----fW~ 79 (153)
+.+|++++||+||+|+|+..+.. +.|++|+..++++++ +.+....++.+.|+++ +|.
T Consensus 235 ~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~ 295 (434)
T PRK07233 235 EVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRR---------------IDYQGVVCMVLKLRRPLTDYYWL 295 (434)
T ss_pred EeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcc---------------cCccceEEEEEEecCCCCCCcee
Confidence 35677899999999999998874 337888888888888 8888888999999987 453
Q ss_pred C--C-CCceE-EEecc-CCccc-cccCC------Ccc------cccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEec
Q psy10801 80 E--D-YQGFH-FFWTQ-HDEQT-LFKDM------AHP------EIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSV 141 (153)
Q Consensus 80 ~--~-~~~~~-~~~~~-~~~~~-~~~~~------~~~------~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~~ 141 (153)
. + ...+. .++.. .+... ..+.. +.. .+.. +++++.+++.|++++|+. ...+++.. .
T Consensus 296 ~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~p~~-~~~~~~~~---~ 369 (434)
T PRK07233 296 NINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSD--EELLDRFLSYLRKMFPDF-DRDDVRAV---R 369 (434)
T ss_pred eecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCH--HHHHHHHHHHHHHhCCCC-ChhheeeE---E
Confidence 2 1 11111 11111 11100 00000 000 1122 778899999999999853 22234433 4
Q ss_pred CCCCCCCCcCC
Q psy10801 142 WSINPHFRGSY 152 (153)
Q Consensus 142 W~~dp~~~Gsy 152 (153)
|...+|+.+.|
T Consensus 370 ~~r~~~a~~~~ 380 (434)
T PRK07233 370 ISRAPYAQPIY 380 (434)
T ss_pred EEEeccccccc
Confidence 44456665544
No 19
>PLN02612 phytoene desaturase
Probab=98.01 E-value=4.1e-05 Score=68.71 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=44.6
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCC
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPE 80 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~ 80 (153)
|.+.+|+++.||+||+|+|+.+++.-.-...+ |....+.+++ +.++...|+.+.|+++||..
T Consensus 345 v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~--~~~~~~~l~~---------------l~~~~v~~v~l~~dr~~~~~ 406 (567)
T PLN02612 345 FLLTNGSVVEGDVYVSATPVDILKLLLPDQWK--EIPYFKKLDK---------------LVGVPVINVHIWFDRKLKNT 406 (567)
T ss_pred EEECCCcEEECCEEEECCCHHHHHHhCcchhc--CcHHHHHHHh---------------cCCCCeEEEEEEECcccCCC
Confidence 45678999999999999999999852111111 1123344556 66788999999999999864
No 20
>PRK07208 hypothetical protein; Provisional
Probab=96.79 E-value=0.0047 Score=53.57 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=44.4
Q ss_pred EEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCC
Q psy10801 9 QYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWW 78 (153)
Q Consensus 9 ~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW 78 (153)
++.||+||+|+|+..+... +.|++|+...+++++ +.+....++.+.|+++.+
T Consensus 266 ~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~~---------------l~~~~~~~v~l~~~~~~~ 317 (479)
T PRK07208 266 TVTADQVISSMPLRELVAA---LDPPPPPEVRAAAAG---------------LRYRDFITVGLLVKELNL 317 (479)
T ss_pred EEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHhC---------------CCcceeEEEEEEecCCCC
Confidence 6899999999999988742 457889999999999 888889999999998754
No 21
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.65 E-value=0.022 Score=50.16 Aligned_cols=115 Identities=18% Similarity=0.290 Sum_probs=65.2
Q ss_pred EccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCC------
Q psy10801 3 GSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKK------ 76 (153)
Q Consensus 3 ~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~------ 76 (153)
.+.+|..+.||.||+|+|+.+|-. +-++.+ -..++.+ +.+-+..=+++-++++
T Consensus 248 ~~~~g~~~~~D~VI~t~p~~~l~~----ll~~~~--~~~~~~~---------------~~~~s~~~vv~~~~~~~~~~~~ 306 (444)
T COG1232 248 VDVGGEKITADGVISTAPLPELAR----LLGDEA--VSKAAKE---------------LQYTSVVTVVVGLDEKDNPALP 306 (444)
T ss_pred EEcCCceEEcceEEEcCCHHHHHH----HcCCcc--hhhhhhh---------------ccccceEEEEEEeccccccCCC
Confidence 457888999999999999999853 444422 2456666 6665566666666654
Q ss_pred --CC---CCCCCce-EEEeccC-----Ccc--cc----c---cCCCcccccccHHHHHHHHHHHHHHHhCCCCCCCCCeE
Q psy10801 77 --WW---PEDYQGF-HFFWTQH-----DEQ--TL----F---KDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIR 136 (153)
Q Consensus 77 --fW---~~~~~~~-~~~~~~~-----~~~--~~----~---~~~~~~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~ 136 (153)
+| +++...+ ...|++. .+. .+ . ++.+.....+ +|+++.+++.|.++++-. .+|..
T Consensus 307 ~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~d--ee~~~~~l~~L~~~~~~~---~~~~~ 381 (444)
T COG1232 307 DGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSD--EELVAAVLDDLKKLGGIN---GDPVF 381 (444)
T ss_pred CceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCH--HHHHHHHHHHHHHHcCcC---cchhh
Confidence 23 0110001 1222221 110 00 0 1111122334 899999999999999853 34545
Q ss_pred EEEecCC
Q psy10801 137 IVRSVWS 143 (153)
Q Consensus 137 ~~~~~W~ 143 (153)
+..++|.
T Consensus 382 ~~v~r~~ 388 (444)
T COG1232 382 VEVTRWK 388 (444)
T ss_pred eeeeecc
Confidence 5555553
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.45 E-value=0.1 Score=45.65 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=29.1
Q ss_pred CEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHc
Q psy10801 8 TQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKG 45 (153)
Q Consensus 8 ~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~ 45 (153)
+++.||+||+|+|+..+.+ +...|.+|++..+.+++
T Consensus 279 ~~~~ad~VI~~~~~~~~~~--ll~~~~~~~~~~~~~~~ 314 (492)
T TIGR02733 279 LNVKADDVVANLPPQSLLE--LLGPLGLPPGYRKRLKK 314 (492)
T ss_pred EEEECCEEEECCCHHHHHH--hcCcccCCHHHHHHHhc
Confidence 6799999999999998864 43457888877777777
No 23
>PLN02487 zeta-carotene desaturase
Probab=92.80 E-value=1.8 Score=39.34 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCCEEEcCEEEEecChHHHhhCCccccCCCcHH--HHHHHHcccccccceeEeeeeeeeeccccEEEEEeCC
Q psy10801 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPK--NLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPK 75 (153)
Q Consensus 6 ~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~--k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~ 75 (153)
+++++.||+||+|+|+..++. +.|++++. ..+.+++ +..-.+.-+.|.|++
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~----Llp~~~~~~~~~~~l~~---------------L~~~pi~tv~L~~d~ 395 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKR----LLPEQWREYEFFDNIYK---------------LVGVPVVTVQLRYNG 395 (569)
T ss_pred CceEEECCEEEECCCHHHHHH----hCCchhhccHHHhHHhc---------------CCCeeEEEEEEEecc
Confidence 355799999999999998874 34555322 2455566 544556666777764
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=90.13 E-value=0.57 Score=41.20 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=34.0
Q ss_pred CEEEcCEEEEecChHHHhhCCccccCCCcH--HHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCC
Q psy10801 8 TQYSADRILITVSLGVLKSNLITFVPPLPP--KNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPK 75 (153)
Q Consensus 8 ~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~--~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~ 75 (153)
+++.||+||+|+|...++. ..|+++. ...+.+++ +......-+.+.|++
T Consensus 269 ~~~~aD~VVlA~p~~~~~~----Ll~~~~~~~~~~~~l~~---------------l~~~pi~~v~l~~~~ 319 (474)
T TIGR02732 269 KVIKADAYVAACDVPGIKR----LLPQEWRQFEEFDNIYK---------------LDAVPVATVQLRYDG 319 (474)
T ss_pred eEEECCEEEECCChHHHHh----hCChhhhcCHHHhhHhc---------------CCCCCeEEEEEEecc
Confidence 5689999999999998864 2344321 24556666 666667777777764
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=83.66 E-value=1.6 Score=38.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.8
Q ss_pred EEccCCCEEEcCEEEEecChHHHhh
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKS 26 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~ 26 (153)
|++++|+++.||+||+|+++..+-.
T Consensus 255 V~~~~g~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 255 VHLADGERLDADAVVSNADLHHTYR 279 (502)
T ss_pred EEECCCCEEECCEEEECCcHHHHHH
Confidence 5678899999999999999865543
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=81.30 E-value=1.9 Score=36.36 Aligned_cols=124 Identities=15% Similarity=0.247 Sum_probs=69.4
Q ss_pred EEccC-CCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCC---C
Q psy10801 2 DGSAD-GTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKK---W 77 (153)
Q Consensus 2 V~t~~-G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~---f 77 (153)
++|++ ++.+.+|.||+|+|.+....-.-.-.-.||...++++.. ..|...--++|-|+.+ -
T Consensus 138 l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~---------------V~y~Pc~s~~lg~~q~l~~P 202 (331)
T COG3380 138 LHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALAD---------------VVYAPCWSAVLGYPQPLDRP 202 (331)
T ss_pred EEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhcc---------------ceehhHHHHHhcCCccCCCC
Confidence 45644 566999999999999765431001124688888888888 7787777788888843 3
Q ss_pred CCCC-CCceEEEeccCCcc----ccccCCCc-ccccccH--------HHHHHHHHHHHHHHhCCCCCCCCCeEEEEecC
Q psy10801 78 WPED-YQGFHFFWTQHDEQ----TLFKDMAH-PEIFDFE--------KVLQADIMRLFRHFLGGAYIIPEPIRIVRSVW 142 (153)
Q Consensus 78 W~~~-~~~~~~~~~~~~~~----~~~~~~~~-~~l~~f~--------~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~~W 142 (153)
|+.. .++-..-|-..+.. ...++.|. ..-.+|. ++.+..+......++|. ..++|.-...+.|
T Consensus 203 ~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~--~~~~p~~s~~H~W 279 (331)
T COG3380 203 WPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD--RLPEPDWSDAHRW 279 (331)
T ss_pred CCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC--CCCcchHHHhhcc
Confidence 4432 12222233332211 11122222 1112222 44555555566666665 4677776666666
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=66.38 E-value=20 Score=31.39 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=17.5
Q ss_pred EEccCCCEEEcCEEEEecChH
Q psy10801 2 DGSADGTQYSADRILITVSLG 22 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~ 22 (153)
|.+.+|+++.||+||++..+.
T Consensus 265 v~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 265 VKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred EEeCCCCEEEcCEEEECCChH
Confidence 567889999999999988553
No 28
>KOG1276|consensus
Probab=58.79 E-value=74 Score=28.58 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred cCCCE-EEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCCCC
Q psy10801 5 ADGTQ-YSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQ 83 (153)
Q Consensus 5 ~~G~~-~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~~~ 83 (153)
.+|++ ..-+++..|+|.-++.+ ..|.+-+...++..+ +.+-.+.=|.+.|++.==.-..+
T Consensus 290 ~~~~~~~~~~~~~~t~~~~k~a~----ll~~~~~sls~~L~e---------------i~y~~V~vVn~~yp~~~~~~pl~ 350 (491)
T KOG1276|consen 290 HSGTQRVVVSYDAATLPAVKLAK----LLRGLQNSLSNALSE---------------IPYVPVAVVNTYYPKEKIDLPLQ 350 (491)
T ss_pred CCCceeeeccccccccchHHhhh----hccccchhhhhhhhc---------------CCCCceEEEEEeccCcccccccc
Confidence 34443 34566667999988864 556677777788888 88888888899998742112345
Q ss_pred ceEEEeccCCcc---cc---ccC------------------CCcc-----cccccHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy10801 84 GFHFFWTQHDEQ---TL---FKD------------------MAHP-----EIFDFEKVLQADIMRLFRHFLGGAYIIPEP 134 (153)
Q Consensus 84 ~~~~~~~~~~~~---~~---~~~------------------~~~~-----~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p 134 (153)
||+.+-...... .+ +.. .|.. ..+. ++.++.+.+.|++++|-. .+|
T Consensus 351 GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~--ee~~~~v~~alq~~Lgi~---~~P 425 (491)
T KOG1276|consen 351 GFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSP--EELVNAVTSALQKMLGIS---NKP 425 (491)
T ss_pred cceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCCCCCH--HHHHHHHHHHHHHHhCCC---CCc
Confidence 666543311111 00 000 0110 0111 889999999999999853 357
Q ss_pred eEEEEecCC
Q psy10801 135 IRIVRSVWS 143 (153)
Q Consensus 135 ~~~~~~~W~ 143 (153)
....++-|.
T Consensus 426 ~~~~v~l~~ 434 (491)
T KOG1276|consen 426 VSVNVHLWK 434 (491)
T ss_pred ccccceehh
Confidence 766666665
No 29
>KOG2820|consensus
Probab=53.15 E-value=11 Score=32.86 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.5
Q ss_pred CEEccCCCEEEcCEEEEecCh
Q psy10801 1 MDGSADGTQYSADRILITVSL 21 (153)
Q Consensus 1 ~V~t~~G~~~~ad~vIvTvPl 21 (153)
.|.|.+|..|.|+++|+|+=.
T Consensus 190 ~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 190 SVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred EEEeccCCeeecceEEEEecH
Confidence 478999999999999999754
No 30
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=51.73 E-value=11 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=13.7
Q ss_pred EEccCCCEEEcCEEEEecC
Q psy10801 2 DGSADGTQYSADRILITVS 20 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvP 20 (153)
|++.+|++++||+||+|.=
T Consensus 117 v~~~~~~~~~a~~VVlAtG 135 (203)
T PF13738_consen 117 VTTRDGRTIRADRVVLATG 135 (203)
T ss_dssp EEETTS-EEEEEEEEE---
T ss_pred EEEEecceeeeeeEEEeee
Confidence 6788888999999999954
No 31
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=37.71 E-value=21 Score=28.61 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.6
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|.|++|+ ++||+||+|.=.
T Consensus 183 v~~~~g~-i~ad~vV~a~G~ 201 (358)
T PF01266_consen 183 VRTSDGE-IRADRVVLAAGA 201 (358)
T ss_dssp EEETTEE-EEECEEEE--GG
T ss_pred ccccccc-cccceeEecccc
Confidence 6789997 999999999644
No 32
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=33.09 E-value=39 Score=28.29 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.5
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|+|.+|++++||+||+|.=.
T Consensus 169 v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 169 LLDANGEVIAASVVVLANGA 188 (381)
T ss_pred EEeCCCCEEEcCEEEEcCCc
Confidence 56788888999999999654
No 33
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=32.55 E-value=37 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.6
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|.|.+|..|.|+.||+|.=.
T Consensus 137 V~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 137 VVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred EEeCCCCeeecCEEEEeecc
Confidence 67899999999999999653
No 34
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=31.72 E-value=35 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.1
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcH
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPP 37 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~ 37 (153)
|+|.+|+ |+|++||+|.- ...+.|.+|.
T Consensus 95 v~t~~~~-~~ak~vIiAtG-------~~~~~~~~~~ 122 (305)
T COG0492 95 VKTDKGT-YEAKAVIIATG-------AGARKLGVPG 122 (305)
T ss_pred EEECCCe-EEEeEEEECcC-------CcccCCCCCc
Confidence 6788997 99999999954 3467777773
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=31.39 E-value=45 Score=29.39 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=16.4
Q ss_pred EEccCCCEEEcCEEEEec
Q psy10801 2 DGSADGTQYSADRILITV 19 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTv 19 (153)
+.|++|++++||.+|+|.
T Consensus 146 l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 146 LDTSSGETVKCDSLILAT 163 (408)
T ss_pred EEcCCCCEEEccEEEEec
Confidence 678999999999999985
No 36
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=30.50 E-value=64 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEccCCCEEEcCEEEEecChHHHhhCCccccCCCcHHHHHHHHc
Q psy10801 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKG 45 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~vLk~~~i~F~P~Lp~~k~~ai~~ 45 (153)
+.|.||+.|.+.++ +.-.|.|.||+-....++.
T Consensus 60 L~~~~G~i~~G~y~-----------EnAAfNPSl~PlQ~AL~~~ 92 (124)
T PF08211_consen 60 LLTSDGRIYTGRYA-----------ENAAFNPSLPPLQAALVQA 92 (124)
T ss_dssp EEETTS-EEEEE-B-------------TTSTT-B-HHHHHHHHH
T ss_pred EEeCCCCEEEEEEE-----------eecccCCChHHHHHHHHHH
Confidence 45678877777664 2358999999886555544
No 37
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=27.22 E-value=40 Score=27.89 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=15.7
Q ss_pred EEccCCCEEEcCEEEEec
Q psy10801 2 DGSADGTQYSADRILITV 19 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTv 19 (153)
|.+.+|+++++|++|+|.
T Consensus 86 V~~~~g~~~~yD~LviAt 103 (364)
T TIGR03169 86 VLLANRPPLSYDVLSLDV 103 (364)
T ss_pred EEECCCCcccccEEEEcc
Confidence 677889899999999985
No 38
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=26.95 E-value=51 Score=28.79 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.3
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|.|.+|+.+.||.||+|.=.
T Consensus 131 V~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 131 VVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEETTSEEEEECEEEE-TTT
T ss_pred EEeCCCCEEecCEEEEeccc
Confidence 67889999999999998644
No 39
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=26.86 E-value=36 Score=14.88 Aligned_cols=7 Identities=43% Similarity=1.284 Sum_probs=4.7
Q ss_pred CCCCCCC
Q psy10801 74 PKKWWPE 80 (153)
Q Consensus 74 ~~~fW~~ 80 (153)
+++||+.
T Consensus 1 ekpfw~p 7 (12)
T PF08248_consen 1 EKPFWPP 7 (12)
T ss_pred CCccCCC
Confidence 4678864
No 40
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=25.88 E-value=54 Score=27.01 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.9
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|.|.+|+ ++||+||+|.=.
T Consensus 192 v~t~~g~-i~a~~vv~a~G~ 210 (387)
T COG0665 192 VETDGGT-IEADKVVLAAGA 210 (387)
T ss_pred EEeCCcc-EEeCEEEEcCch
Confidence 6788886 999999999653
No 41
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.36 E-value=66 Score=25.27 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=15.7
Q ss_pred EEccCCCEEEcCEEEEecC
Q psy10801 2 DGSADGTQYSADRILITVS 20 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvP 20 (153)
|++.+|+++++|++|++.=
T Consensus 91 v~~~~~~~~~~d~liiAtG 109 (300)
T TIGR01292 91 VKTGDGKEYTAKAVIIATG 109 (300)
T ss_pred EEeCCCCEEEeCEEEECCC
Confidence 4566788999999999874
No 42
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=25.13 E-value=62 Score=29.14 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=17.0
Q ss_pred EEccCCCEEEcCEEEEecC
Q psy10801 2 DGSADGTQYSADRILITVS 20 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvP 20 (153)
|.+++|.++.||+||+++=
T Consensus 209 v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 209 VKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred EEccCCcEEecCEEEEccC
Confidence 6788999999999999974
No 43
>PLN02463 lycopene beta cyclase
Probab=24.35 E-value=66 Score=28.29 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=16.3
Q ss_pred EEccCCCEEEcCEEEEec
Q psy10801 2 DGSADGTQYSADRILITV 19 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTv 19 (153)
|+|++|++++||.||.|-
T Consensus 148 V~~~dG~~i~A~lVI~Ad 165 (447)
T PLN02463 148 VVCDDGVKIQASLVLDAT 165 (447)
T ss_pred EEECCCCEEEcCEEEECc
Confidence 678899999999999996
No 44
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.23 E-value=45 Score=27.59 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEcCEEEEecChHHHhhCCccccCCCcH------------HHHHHHHcccccccceeEeeeeeeeecc
Q psy10801 10 YSADRILITVSLGVLKSNLITFVPPLPP------------KNLNAIKGLAVETSVLYFVLFQGLAFGT 65 (153)
Q Consensus 10 ~~ad~vIvTvPl~vLk~~~i~F~P~Lp~------------~k~~ai~~~~~~~~~~~~~~~~~l~~g~ 65 (153)
-.||.||++||....-.-.-...|.|++ .-.+|++.+. +..+ .|+-.+|+. |+
T Consensus 63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~-~~~~-~~vg~HPM~-G~ 127 (279)
T COG0287 63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL-PGDV-RFVGGHPMF-GP 127 (279)
T ss_pred ccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc-cCCC-eeEecCCCC-CC
Confidence 3479999999998765421245555552 2345555522 2233 666666665 54
No 45
>PRK07846 mycothione reductase; Reviewed
Probab=22.22 E-value=79 Score=27.50 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.2
Q ss_pred EEccCCCEEEcCEEEEec
Q psy10801 2 DGSADGTQYSADRILITV 19 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTv 19 (153)
|++.+|+++++|++|++.
T Consensus 119 V~v~~g~~~~~d~lViAT 136 (451)
T PRK07846 119 LRTGDGEEITADQVVIAA 136 (451)
T ss_pred EEECCCCEEEeCEEEEcC
Confidence 567788899999999985
No 46
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=21.95 E-value=61 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=11.0
Q ss_pred cCEEEEecChHHHhh
Q psy10801 12 ADRILITVSLGVLKS 26 (153)
Q Consensus 12 ad~vIvTvPl~vLk~ 26 (153)
||.||+++|+..+..
T Consensus 62 advvilav~p~~~~~ 76 (96)
T PF03807_consen 62 ADVVILAVKPQQLPE 76 (96)
T ss_dssp TSEEEE-S-GGGHHH
T ss_pred CCEEEEEECHHHHHH
Confidence 899999999987754
No 47
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=21.73 E-value=81 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.094 Sum_probs=15.9
Q ss_pred EEccCCCEEEcCEEEEecC
Q psy10801 2 DGSADGTQYSADRILITVS 20 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvP 20 (153)
|++++|++++||+||+..+
T Consensus 269 V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 269 VKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred EEECCCcEEECCEEEECcc
Confidence 6788999999999998543
No 48
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=21.69 E-value=83 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=16.0
Q ss_pred EEccCCCEEEcCEEEEecChH
Q psy10801 2 DGSADGTQYSADRILITVSLG 22 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~ 22 (153)
|.|.+| +++||+||+|.=..
T Consensus 173 v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 173 IVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred EEcCCC-EEECCEEEEcCChh
Confidence 566777 79999999997654
No 49
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=21.29 E-value=85 Score=26.12 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.0
Q ss_pred EEccCCCEEEcCEEEEecChH
Q psy10801 2 DGSADGTQYSADRILITVSLG 22 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl~ 22 (153)
|++.+|++++||.||.|-...
T Consensus 120 v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 120 VYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred EEeCCCCEEEeCEEEECCCCc
Confidence 567788899999999998864
No 50
>PRK06847 hypothetical protein; Provisional
Probab=20.46 E-value=89 Score=25.73 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.4
Q ss_pred EEccCCCEEEcCEEEEecCh
Q psy10801 2 DGSADGTQYSADRILITVSL 21 (153)
Q Consensus 2 V~t~~G~~~~ad~vIvTvPl 21 (153)
|.+.+|++++||.||+|--.
T Consensus 142 v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 142 VTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEcCCCEEEcCEEEECcCC
Confidence 45678999999999998653
Done!