RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10801
(153 letters)
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 76.4 bits (188), Expect = 5e-17
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 40/169 (23%)
Query: 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
DG AD +++TV LGVLK I F+PPLP AI + L FG+
Sbjct: 243 DGRTIEADAVIVTVPLGVLKR--ILFLPPLPAAKQEAI---------------RNLGFGS 285
Query: 66 IDKIFIRFPKKWWPEDYQGFHFFWTQHDEQ------TLFKDMAHPEI------------- 106
+ K+F+ F +WPE+ F T + T + +
Sbjct: 286 VSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAAREL 345
Query: 107 --FDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR 153
E++L+A ++R R LG +P+P+ + S W +P+ RGSY
Sbjct: 346 EDLSDEELLEA-VLRDLRKLLGPED-VPDPVNFLVSDWHTDPYARGSYS 392
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 74.8 bits (184), Expect = 2e-16
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 43/170 (25%)
Query: 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIK--GLAVETSVLYFVLFQGLAF 63
DG+ Y A ++++VSLGVL+S+LI F PPLP + AI +AV T
Sbjct: 269 DGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYT------------- 315
Query: 64 GTIDKIFIRFPKKWWPE-----------DYQGFHFFWTQHDEQ------TLFKDMAHPEI 106
KIF++FP K+WP + +G++ FW QH E LF + E
Sbjct: 316 ----KIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFW-QHLENEYPGSNVLFVTVTDEES 370
Query: 107 FDFE----KVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
E +A+IM + R G IPE I+ W N F+GSY
Sbjct: 371 RRIEQQPDSETKAEIMEVLRKMFGPN--IPEATDILVPRWWSNRFFKGSY 418
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 63.5 bits (154), Expect = 2e-12
Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 7 GTQ-YSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
G Q Y D +L TV LGVLK+ I FVP LP + L+ IK L FG
Sbjct: 414 GNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIK---------------RLGFGL 458
Query: 66 IDKIFIRFPKKWWPED------------YQG----FHFFWTQHDEQTLFKDMAHPEIFDF 109
++K+ + FP +W D Y+G F+ + L +A F
Sbjct: 459 LNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKF 518
Query: 110 EKVLQADIMRLFRHFLGGAY-----IIPEPIRIVRSVWSINPHFRGSY 152
E + D + H L G Y +P+P++ V + W +P GSY
Sbjct: 519 ETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSY 566
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 62.8 bits (153), Expect = 2e-12
Identities = 47/169 (27%), Positives = 63/169 (37%), Gaps = 46/169 (27%)
Query: 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
DGT + AD +I V LGVLK+N+I F P LP AI L V G
Sbjct: 235 DGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGV---------------GI 279
Query: 66 IDKIFIRFPKKWWP---------EDYQGFHFFWTQHDEQTLFKDMAHPEI---------F 107
+KI + F +WP G +F H K HP +
Sbjct: 280 ENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLH------KATGHPVLVYMPAGRLAR 333
Query: 108 DFEKVLQAD----IMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
D EK+ M + L A EP++ + S W +P+ G Y
Sbjct: 334 DIEKLSDEAAANFAMSQLKKMLPDA---TEPVQYLVSRWGSDPNSLGCY 379
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 62.2 bits (151), Expect = 4e-12
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 50/176 (28%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+++G+++ D +LITV LG LK+ I F PPLP ++I Q L F
Sbjct: 978 TSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSI---------------QRLGF 1022
Query: 64 GTIDKIFIRFPKKWWPE--DYQG------------FHFFWTQHDEQTLFKDMAHPEI--- 106
G ++K+ + FP+ +W + DY G F FW + K + P +
Sbjct: 1023 GVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCF-MFW------NVKKTVGAPVLIAL 1075
Query: 107 ------FDFEKVLQAD----IMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
D + + +D + + R G A ++P+P+ V + W +P G+Y
Sbjct: 1076 VVGKAAIDGQSMSSSDHVNHALMVLRKLFGEA-LVPDPVASVVTDWGRDPFSYGAY 1130
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 51.8 bits (124), Expect = 2e-08
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLIT----FVPPLPPKNLNAIKGLAVETSVLYFVLFQG 60
ADG+ +AD +++TVSLGVLK+ + F PPLP +AI
Sbjct: 278 ADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAI---------------SR 322
Query: 61 LAFGTIDKIFIRF--PKKWWPEDYQGF---HFFWTQHDEQTLFK 99
L FG ++K+F+ PED F + + D +
Sbjct: 323 LGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHD 366
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 135 IRIVRSVWSINPHFRGSY 152
+++++S W +P F GSY
Sbjct: 450 VKVLKSKWGTDPLFLGSY 467
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 50.8 bits (121), Expect = 4e-08
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 36/169 (21%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
A G ++ D +L TV LGVLK I F P LP + +AI Q L +G
Sbjct: 469 AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAI---------------QRLGYG 513
Query: 65 TIDKIFIRFPKKWWPEDYQGF------------HFFWTQHDEQT----LFKDMAHPEIFD 108
++K+ + FP +W + F F + + + L +A
Sbjct: 514 LLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVK 573
Query: 109 FEKVLQADIMRLFRHFLGGAY-----IIPEPIRIVRSVWSINPHFRGSY 152
FE + + ++ L G + ++P+P++ V + W + GSY
Sbjct: 574 FETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSY 622
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 50.7 bits (121), Expect = 5e-08
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 37/168 (22%)
Query: 7 GTQ-YSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
G+Q + AD +L TV LGVLK I F P LP + L AI L FG
Sbjct: 390 GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAID---------------RLGFGL 434
Query: 66 IDKIFIRFPKKWWPEDYQG-------------FHFFWTQHDEQ---TLFKDMAHPEIFDF 109
++K+ + FP +W E+ F F+ H L +A F
Sbjct: 435 LNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRF 494
Query: 110 EKVLQADIMRLFRHFLGGAY-----IIPEPIRIVRSVWSINPHFRGSY 152
E + ++ L G Y +P+PI+ + + W +P GSY
Sbjct: 495 ENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSY 542
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 35.9 bits (83), Expect = 0.005
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ D QY AD +L+T+ L +L I F P LP + A KG+ +
Sbjct: 243 ADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVP---------------Y 285
Query: 64 GTIDKIFIRFPKKWWPED 81
G+ KI + F + +W E
Sbjct: 286 GSATKIGVAFSRPFWEEA 303
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 31.8 bits (72), Expect = 0.13
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 26/114 (22%)
Query: 1 MDGSADGTQYSADRILITVSLGVLK----------SNLITFVPPLPPKNLNAIKGLAVET 50
+D +AD + ++D IL+ SL VL+ N++ ++ N + + V +
Sbjct: 627 VDTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVAS 686
Query: 51 SVLYF-------VLFQGL---------AFGTIDKIFIRFPKKWWPEDYQGFHFF 88
+ + F +L Q L + +D+ F++ P +W + F
Sbjct: 687 AFIPFLPMLSLHLLIQNLLYDFSQLTLPWDKMDREFLKKPHQWEQKGMGRFMLC 740
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 30.3 bits (68), Expect = 0.36
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 22 GVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPED 81
G + ++T VPPLPP L+ + G Y+ F+ + + D W D
Sbjct: 433 GPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD---------WGIRD 483
Query: 82 YQGFHFFWTQHDE 94
G+ F + D+
Sbjct: 484 EDGYTFILGRTDD 496
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 29.0 bits (65), Expect = 1.2
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 55 FVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQ 114
++ F+ L G + WW Y HF D T D P+ + FE
Sbjct: 767 WLFFRYLVVGVYVGLATVGGFVWW---YLLTHFTGCDEDSFTTCPDFEDPDCYVFEGKQP 823
Query: 115 ADIMRL 120
A + L
Sbjct: 824 ARTISL 829
>gnl|CDD|218815 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST). This
family consists of several bacterial
Arylsulfotransferase proteins. Arylsulfotransferase
(ASST) transfers a sulfate group from phenolic sulfate
esters to a phenolic acceptor substrate.
Length = 459
Score = 28.1 bits (63), Expect = 1.8
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 11/30 (36%)
Query: 74 PKKWWPEDYQ-----------GFHFFWTQH 92
+ WP++YQ F + W QH
Sbjct: 305 DPEGWPKEYQKKLLTPVDAEGDFDWTWGQH 334
>gnl|CDD|238048 cd00100, IL1, Interleukin-1 homologes; Cytokines with various
biological functions. Interleukin 1 alpha and beta are
also known as hematopoietin and catabolin. This family
also contains interleukin-1 receptor antagonists
(inhibitors).
Length = 144
Score = 27.0 bits (60), Expect = 3.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 85 FHFFWTQHDEQTLFKDMAHPEIF 107
F FFW + + F+ A P F
Sbjct: 94 FVFFWEEIGNKNYFESAAFPNWF 116
>gnl|CDD|185081 PRK15127, PRK15127, multidrug efflux system protein AcrB;
Provisional.
Length = 1049
Score = 27.6 bits (61), Expect = 3.7
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 52 VLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQG 84
VLY ++ G+A+ +F+R P + P++ QG
Sbjct: 543 VLYLIIVVGMAY-----LFVRLPSSFLPDEDQG 570
>gnl|CDD|182492 PRK10483, PRK10483, tryptophan permease; Provisional.
Length = 414
Score = 27.0 bits (60), Expect = 3.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 21 LGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLA 62
+G K+ L+TF+PP+ + GL LY + + GLA
Sbjct: 320 MGRFKTALLTFLPPV-------VGGLLFPNGFLYAIGYAGLA 354
>gnl|CDD|234030 TIGR02834, spo_ytxC, putative sporulation protein YtxC. This
uncharacterized protein is part of a panel of proteins
conserved in all known endospore-forming Firmicutes
(low-GC Gram-positive bacteria), including
Carboxydothermus hydrogenoformans, and nowhere else
[Cellular processes, Sporulation and germination].
Length = 276
Score = 26.9 bits (60), Expect = 4.9
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 68 KIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRH 123
I + + +++T +E +A+ + K ++I ++ R
Sbjct: 69 DIIVEHKEDELILKIIEESYYFTDQEEIEQILAIANSILTGERKDDPSEIYKMNRK 124
>gnl|CDD|227328 COG4995, COG4995, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 420
Score = 26.6 bits (59), Expect = 5.7
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 6 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
DG QY ++ I S G+ L P L +NL + E S F L F
Sbjct: 183 DGKQYLIEKYAIATSPGL---QLTDSKP-LRQQNLKVLAAGLSEPSGPARTGFDALPF 236
>gnl|CDD|224661 COG1747, COG1747, Uncharacterized N-terminal domain of the
transcription elongation factor GreA [Function unknown].
Length = 711
Score = 26.8 bits (59), Expect = 6.6
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 7 GTQYSADRILITVSLGVLKS--NLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
G +Y R LIT + K L P PPK+L +K LA V+ L F
Sbjct: 655 GQRYLGVRQLITEAEETAKEFGLLSEKCPQFPPKDLLVLKSLAE-------VVQPSLKFE 707
Query: 65 T 65
Sbjct: 708 D 708
>gnl|CDD|219721 pfam08118, MDM31_MDM32, Yeast mitochondrial distribution and
morphology (MDM) proteins. Proteins in this family are
yeast mitochondrial inner membrane proteins MDM31 and
MDM32. These proteins are required for the maintenance
of mitochondrial morphology, and the stability of
mitochondrial DNA.
Length = 503
Score = 26.4 bits (58), Expect = 7.3
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 86 HFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIM------RLFRHFL 125
H W D+ +K++ P F+ D++ FR F
Sbjct: 197 HVHWKADDDARNYKNVHQPGDFEISNFKMNDVLFTLYQPGGFRPFQ 242
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 26.3 bits (59), Expect = 8.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 6 DGTQYSADRILITV 19
+G +Y+AD ILI
Sbjct: 126 NGERYTADHILIAT 139
>gnl|CDD|237340 PRK13300, PRK13300, tRNA CCA-pyrophosphorylase; Provisional.
Length = 447
Score = 26.0 bits (58), Expect = 8.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 40 LNAIKGLAVETSVLYFVLFQG-LAFGT-------IDKIFIRFPKKW 77
+ ++ E + V G A GT ID IF+ FPK
Sbjct: 28 IERLEEAIKELGLDAEVELVGSTARGTWLSGDRDID-IFVLFPKDT 72
>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating
Proteins (GAP). ArfGAP is a GTPase activating protein
which regulates the ADP ribosylation factor Arf, a
member of the Ras superfamily of GTP-binding proteins.
The GTP-bound form of Arf is involved in Golgi
morphology and is involved in recruiting coat proteins.
ArfGAP is responsible for the GDP-bound form of Arf
which is necessary for uncoating the membrane and
allowing the Golgi to fuse with an acceptor compartment.
These proteins contain an N-terminal ArfGAP domain
containing the characteristic zinc finger motif
(Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain.
C2 domains were first identified in Protein Kinase C
(PKC). C2 domains fold into an 8-standed beta-sandwich
that can adopt 2 structural arrangements: Type I and
Type II, distinguished by a circular permutation
involving their N- and C-terminal beta strands. Many C2
domains are Ca2+-dependent membrane-targeting modules
that bind a wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a single
C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin which
only have a single C2 domain. C2 domains with a calcium
binding region have negatively charged residues,
primarily aspartates, that serve as ligands for calcium
ions.
Length = 145
Score = 25.4 bits (56), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 93 DEQTLFKD--MAHPEIFDFEKVLQADIMRLFRHFLGGAYI 130
D+ T KD M E D E +++A + R GG I
Sbjct: 69 DKDTFSKDDSMGEAE-IDLEPLVEAAKLDHLRDTPGGTQI 107
>gnl|CDD|234304 TIGR03671, cca_archaeal, CCA-adding enzyme.
Length = 408
Score = 26.0 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 42 AIKGLAVETSVLYFVLFQG-LAFGT-------IDKIFIRFPKKW 77
++ + E V V+ G A GT ID IFI FPK
Sbjct: 29 RLEEIIEELGVDAEVVLVGSYARGTWLKGDRDID-IFILFPKDT 71
>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional.
Length = 989
Score = 26.2 bits (57), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 120 LFRHFLGGAYIIPEPIRIVRSVWSINP 146
++ ++ Y+ P P R+ +VWSI P
Sbjct: 47 VYEEYIRSGYLKPHPSRMYYNVWSILP 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.145 0.465
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,277,749
Number of extensions: 769632
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 48
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.8 bits)