RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10801
(153 letters)
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 123 bits (310), Expect = 3e-34
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 36/169 (21%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ D + YSAD ++++ SLGVL+S+LI F P LP + AI
Sbjct: 251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAI---------------YQFDM 295
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVL---------- 113
KIF++FP+K+WPE F + + + VL
Sbjct: 296 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 355
Query: 114 ----------QADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+A+IM++ R G +P+ I+ W + ++G++
Sbjct: 356 RIEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 403
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 104 bits (260), Expect = 4e-27
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 35/168 (20%)
Query: 4 SADGTQYSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGL 61
++ Y D +L T+ LGVLK + FVPPLP +A+ Q +
Sbjct: 439 TSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRM 483
Query: 62 AFGTIDKIFIRFPKKWWPEDYQGFHF-------------FWTQHDEQTLFKDMAHPEIFD 108
FG ++K+ + F + +W F FW + L +A
Sbjct: 484 GFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGI 543
Query: 109 FEK----VLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
E V+ + + + G + +P+P V S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 590
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 104 bits (260), Expect = 5e-27
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 35/168 (20%)
Query: 4 SADGTQYSADRILITVSLGVLKSN--LITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGL 61
++ Y D +L T+ LGVLK + FVPPLP +A+ Q +
Sbjct: 610 TSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV---------------QRM 654
Query: 62 AFGTIDKIFIRFPKKWWPEDYQGFHF-------------FWTQHDEQTLFKDMAHPEIFD 108
FG ++K+ + F + +W F FW + L +A
Sbjct: 655 GFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGI 714
Query: 109 FEK----VLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
E V+ + + + G + +P+P V S W +P RGSY
Sbjct: 715 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 761
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 100 bits (250), Expect = 9e-26
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 38/166 (22%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
+ A R+++ V + I++ PPLP + Q + G
Sbjct: 250 DGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMH---------------QHQSLG 292
Query: 65 TIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHP------------------EI 106
+ K+ + +W ED F Q ++ + H
Sbjct: 293 LVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFE 352
Query: 107 FDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
E+ I+ +LG EP+ S W RG Y
Sbjct: 353 LSAEERKAT-ILASLARYLGPK--AEEPVVYYESDWGSEEWTRGCY 395
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 96.4 bits (240), Expect = 2e-24
Identities = 22/168 (13%), Positives = 45/168 (26%), Gaps = 37/168 (22%)
Query: 4 SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
+ + Y A ++ + + I F PPLP I +
Sbjct: 249 TLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMI---------------TRVPL 291
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQ------TLFKDMAHPEIFDF-------- 109
G++ K + + + +W + + + + I F
Sbjct: 292 GSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARK 351
Query: 110 -----EKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
++ + L+ LG EP+ W + G Y
Sbjct: 352 LARLTKEERLKKLCELYAKVLGSLEA-LEPVHYEEKNWCEEQYSGGCY 398
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 85.4 bits (211), Expect = 2e-20
Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 37/161 (22%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
DG ++ A R++ T+ L VL + I F P L + ++A+ Q
Sbjct: 294 RDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAM---------------QAGHVS 336
Query: 65 TIDKIFIRFPKKWW--------PEDYQGFHFFWTQHDEQ-----TLFKDMAHPEIFDFEK 111
K+ K P + + H ++
Sbjct: 337 MCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANH---IQPDE 393
Query: 112 VLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
++ ++ G R+V W + +G++
Sbjct: 394 DVRE-TLKAVGQLAPGT---FGVKRLVFHNWVKDEFAKGAW 430
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 84.1 bits (208), Expect = 5e-20
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 25/152 (16%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
DG + A +++ + + I F P LP + + I + G
Sbjct: 241 KDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVI---------------EEGHGG 283
Query: 65 TIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIF----DFEKVLQADIMRL 120
KI I + G F T +D + + F F+ +
Sbjct: 284 QGLKILIHVRGAEAGIECVGDGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKDA 343
Query: 121 FRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
++L E + I W +P F G +
Sbjct: 344 VLYYLPEV----EVLGIDYHDWIADPLFEGPW 371
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 73.0 bits (179), Expect = 4e-16
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 39/172 (22%)
Query: 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGL 61
S + +AD +++ + ++ I F PPL PK +A+ + +
Sbjct: 277 TLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHAL---------------RSV 319
Query: 62 AFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHP----------------- 104
+ + KIF+ K+W +D T + ++ +
Sbjct: 320 HYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDAN 379
Query: 105 --EIFDFEKVLQADIMRLFR--HFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+ DF+ + H L I V WS++ + G
Sbjct: 380 FFQALDFKDCADI-VFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGI 430
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 73.3 bits (179), Expect = 4e-16
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 ADGTQYSADRILITVSLGVLKSNL---------ITFVPPLPPKNLNAIKGLAVETSVLYF 55
DGT Y+AD ++ITV VL ++ I F PPL P +A
Sbjct: 239 EDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAF------------ 286
Query: 56 VLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDE 94
+ FG + K+ F + W + +E
Sbjct: 287 ---DKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 58.7 bits (142), Expect = 4e-11
Identities = 17/178 (9%), Positives = 43/178 (24%), Gaps = 54/178 (30%)
Query: 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGL 61
+AD + T+ ++ LP L A+ +
Sbjct: 275 TAGGSKKSITADYAICTIPPHLVG----RLQNNLPGDVLTAL---------------KAA 315
Query: 62 AFGTIDKIFIRFPKKWWPEDYQGFHF---------------------------FWTQHDE 94
+ K+ I + ++WW + + + +++
Sbjct: 316 KPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVVAYYSSGKR 375
Query: 95 QTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
Q F+ + H + + G Y + W + ++
Sbjct: 376 QEAFESLTHRQRLA-------KAIAEGSEIHGEKY-TRDISSSFSGSWRRTKYSESAW 425
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 54.2 bits (130), Expect = 2e-10
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 17/81 (20%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
A ++ D ++T+ L+ + PP K A+ +
Sbjct: 1 AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAV---------------IETHYD 43
Query: 65 TIDKIFIRFPKKWWPEDYQGF 85
K+ + F ++WW +
Sbjct: 44 QATKVLLEFSRRWWEFTEADW 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.18
Identities = 21/165 (12%), Positives = 40/165 (24%), Gaps = 47/165 (28%)
Query: 13 DRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLY------FVLFQGLA-FGT 65
++T + L N++ ++ L VL G+ G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG- 162
Query: 66 IDKIFIRFPKKWW----------PEDYQGFHFFW------TQHDE-----QTLFKDM--- 101
K W + F FW + Q L +
Sbjct: 163 ----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 102 --AHPEIFDFEKVLQADI-MRLFRHFLGGAYIIPEPIRIVRSVWS 143
+ + K+ I L R Y + ++ +V +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQN 255
Score = 29.4 bits (65), Expect = 0.51
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 24/66 (36%)
Query: 72 RFPKKWWPED------------YQGFHFFWTQHDEQ-TLFKDMAHPEIF-DFEKVLQADI 117
PK + +D + G H +H E+ TLF +F DF + L+ I
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDF-RFLEQKI 507
Query: 118 MRLFRH 123
RH
Sbjct: 508 ----RH 509
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 30.2 bits (68), Expect = 0.21
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 119 RLFRHFLGGAYIIPEPIRIVRSVWSINPHFRG 150
+ + G Y P ++ IN F G
Sbjct: 118 IIMKALWTGQYRYISPKDFKITIGKINDQFAG 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.26
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 20 SLGVLKSNLITFVPPLPPKNLNAIKGLAVETSV 52
+L L+++L + P LA++ ++
Sbjct: 21 ALKKLQASLKLYADDSAP-------ALAIKATM 46
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 29.9 bits (67), Expect = 0.35
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 79 PEDYQGFHFFWTQHDEQTLFKDMAHPEIFD--FEKVLQADIMRLFRHFLGGAYIIPEPIR 136
P + ++ + D D ++ A + I
Sbjct: 164 PYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIY 223
Query: 137 IVRSVWSINPHFRG 150
++ W IN + G
Sbjct: 224 LLTCAWKINQNLAG 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.58
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 31/98 (31%)
Query: 47 AVETSVL-----YFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQT----- 96
++E +L +F+ Q + + F K PE +GF DE T
Sbjct: 15 SLEHVLLVPTASFFIASQ------LQEQFN----KILPEPTEGF----AADDEPTTPAEL 60
Query: 97 LFKDMAH-------PEIFDFEKVLQADIMRLFRHFLGG 127
+ K + + ++ F++VL + +L G
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 28.6 bits (64), Expect = 0.79
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 134 PIRIVRSVWSINPHFRG 150
P + P F G
Sbjct: 79 PSEFKTQIQRYAPRFVG 95
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 28.8 bits (64), Expect = 0.87
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 35 LPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDE 94
P N+ LA+ AF DK F+ F + ED+ G HD+
Sbjct: 272 APQVGKNSATFLAL--------FLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDD 323
Query: 95 QT 96
Sbjct: 324 LM 325
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 28.0 bits (62), Expect = 1.2
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 119 RLFRHFLGGAYIIPEPIRIVRSVWSINPHFRG 150
L + G P V P F G
Sbjct: 64 ELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSG 95
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 26.4 bits (58), Expect = 3.9
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 110 EKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+ + + G + W +P+ G
Sbjct: 56 DAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEA 98
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 26.8 bits (58), Expect = 4.1
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 85 FHFFWTQHDEQTLFKDMAHP-EIF 107
FH W T+ + P E+F
Sbjct: 505 FHAHWFCAGTDTVLGATSDPLELF 528
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 26.4 bits (57), Expect = 4.7
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 85 FHFFWTQHDEQTLFKDMAHP-EIF 107
FH W T+ + P E+F
Sbjct: 194 FHAHWFCAGTDTVLGATSDPLELF 217
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 26.4 bits (57), Expect = 5.4
Identities = 11/45 (24%), Positives = 14/45 (31%)
Query: 93 DEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRI 137
E F + DFE+V R I P PI +
Sbjct: 98 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINL 142
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 26.0 bits (58), Expect = 6.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 78 WPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLG 126
W D +G F+ + +Q D +K+ + H LG
Sbjct: 178 WTHDGKGM--FYNAYPQQDGKSDGTETSTNLHQKL--------YYHVLG 216
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 25.6 bits (56), Expect = 7.3
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 92 HDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRI 137
E F + DFE+V R I P PI +
Sbjct: 77 TTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINL 122
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 25.5 bits (57), Expect = 8.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 4 SADGTQYSADRILITV 19
G +Y+A ILI
Sbjct: 141 EVSGKKYTAPHILIAT 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.465
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,542,923
Number of extensions: 146099
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 42
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)