RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10801
(153 letters)
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
[TaxId: 4577]}
Length = 112
Score = 59.1 bits (142), Expect = 8e-13
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 21/109 (19%)
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVL---------- 113
KIF++FP+K+WPE F + + + VL
Sbjct: 3 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 62
Query: 114 ----------QADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
+A+IM++ R G +P+ I+ W + ++G++
Sbjct: 63 RIEQQSDEQTKAEIMQVLRKMFPG-KDVPDATDILVPRWWSDRFYKGTF 110
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 58.7 bits (141), Expect = 1e-12
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 63 FGTIDKIFIRFPKKWWPEDYQGFHF-------------FWTQHDEQTLFKDMAHPEIFDF 109
FG ++K+ + F + +W F FW + L +A
Sbjct: 2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIM 61
Query: 110 EKVLQADIMRLFRHFL---GGAYIIPEPIRIVRSVWSINPHFRGSY 152
E + I+ L G+ +P+P V S W +P RGSY
Sbjct: 62 ENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY 107
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 49.0 bits (116), Expect = 5e-09
Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 20/108 (18%)
Query: 64 GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDF-------------- 109
G++ K + + + +W + + + ++
Sbjct: 3 GSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARK 62
Query: 110 -----EKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
++ + L+ LG EP+ W + G Y
Sbjct: 63 LARLTKEERLKKLCELYAKVLGSLE-ALEPVHYEEKNWCEEQYSGGCY 109
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
(Calloselasma rhodostoma) [TaxId: 8717]}
Length = 113
Score = 45.2 bits (106), Expect = 1e-07
Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 20/110 (18%)
Query: 63 FGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKD--------------MAHPEIFD 108
+ + KIF+ K+W +D T + ++ +
Sbjct: 2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANF 61
Query: 109 FEKV----LQADIMRLFRHFLG--GAYIIPEPIRIVRSVWSINPHFRGSY 152
F+ + + I V WS++ + G
Sbjct: 62 FQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGI 111
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 39.4 bits (90), Expect = 7e-05
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 2 DGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGL 46
S + +AD +++ + ++ LI F PPL PK +A++ +
Sbjct: 274 TLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSV 316
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 39.2 bits (89), Expect = 8e-05
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
D + YSAD ++++ SLGVL+S+LI F P LP + AI
Sbjct: 248 EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAI---------------YQFWPV 292
Query: 65 TIDKIFIRFPKKWWPED 81
+++ + + P
Sbjct: 293 GVNR--YEYDQLRAPVG 307
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 38.2 bits (87), Expect = 2e-04
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 5 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
+ Y A ++ + + I F PPLP I + + +
Sbjct: 245 LNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVD 302
Query: 65 TIDKIFIRFPKKWWPEDYQGF 85
I F + G+
Sbjct: 303 R-----IYFAGTETATHWSGY 318
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 26.2 bits (57), Expect = 2.0
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 65 TIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAH-----PEIFDFEKVLQADIMR 119
I ++ + + + + + F F + H + LFKD AH P D + L + +
Sbjct: 259 LIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVT 318
Query: 120 LFRHF 124
R+
Sbjct: 319 AIRNL 323
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 25.8 bits (55), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 66 IDKIFIRFPKKWWPEDYQG 84
I+ R PK+ W E+ +G
Sbjct: 300 IEHNVNRKPKRIWTENPEG 318
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 24.4 bits (53), Expect = 7.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 79 PEDYQGFHFFWTQHDEQTLFKDMAH 103
P FH F +Q+L +M +
Sbjct: 143 PRKSSHFHIFMGNDSQQSLLNEMEN 167
>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130
cytokine-binding domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 23.5 bits (49), Expect = 9.7
Identities = 14/78 (17%), Positives = 24/78 (30%)
Query: 32 VPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQ 91
V P PP NL+ I + + + + I K I++ K Q
Sbjct: 3 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 62
Query: 92 HDEQTLFKDMAHPEIFDF 109
+D+ + F
Sbjct: 63 TRSSFTVQDLKPFTEYVF 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.145 0.465
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,005
Number of extensions: 29921
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 17
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.2 bits)