RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10805
(253 letters)
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 133
Score = 35.3 bits (81), Expect = 0.002
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 172 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 231
EK + K + + + SE L K +F DK T +D L + +
Sbjct: 36 EKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIF------EPKC 89
Query: 232 IRAYPNLVEHCTRIEQ 247
+ A+PNL + R E
Sbjct: 90 LDAFPNLKDFLARFEG 105
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus
[TaxId: 6282]}
Length = 131
Score = 30.4 bits (68), Expect = 0.093
Identities = 18/107 (16%), Positives = 24/107 (22%), Gaps = 20/107 (18%)
Query: 141 HGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFF 200
H Y T K L EK L R N
Sbjct: 21 HVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLAT--------------RGNGRNLIL 66
Query: 201 KDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQ 247
DK + D LF + + +P L R++
Sbjct: 67 GDKISYADYALFEELDVHQ------ILDPHCLDKFPLLKVFHQRMKD 107
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 126
Score = 29.2 bits (65), Expect = 0.20
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 156 KKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHI 215
+ + K + EK L + + + +F + T D +F
Sbjct: 35 ETTFLNEDLPKWSGYFEKLLKK----------NHTNNNNDKYYFVGNNLTYADLAVFNLY 84
Query: 216 YAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQ 247
+ ++ S+++ +P L H I
Sbjct: 85 DDIE------TKYPSSLKNFPLLKAHNEFISN 110
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 127
Score = 29.2 bits (65), Expect = 0.20
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 143 AVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKD 202
+A K+K V + + + + L+Q K + +
Sbjct: 25 KIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVK-------------DNDGHLALG 71
Query: 203 KPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQ 247
K T D G + + + YP L +
Sbjct: 72 KLTWADVYFAGITDYMNYMVKRD-----LLEPYPALRGVVDAVNA 111
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides
polygyrus [TaxId: 6339]}
Length = 129
Score = 28.1 bits (62), Expect = 0.51
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 176 DQVYKDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIR 233
D + K +++ L+KN+ F DK + +D L+ H+ + NR I
Sbjct: 46 DVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMT------NRVPEYIE 99
Query: 234 AYPNLVEHCTRIEQ 247
+P + H RI+Q
Sbjct: 100 GFPEVKAHMERIQQ 113
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 96
Score = 26.9 bits (59), Expect = 0.88
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 21 IIGTKKIYMHLLH--VVFIFFPAREIWPDDVKLYQPYEVEQILLPDNAHCLAVQAYLKML 78
+ + L + +E+ +K +V L +Q L+++
Sbjct: 20 LNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79
Query: 79 GLKYT 83
GL YT
Sbjct: 80 GLPYT 84
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 226
Score = 28.0 bits (62), Expect = 0.92
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 11/35 (31%)
Query: 29 MHLLHVVFIFFPAREIWPDD--------VKLYQPY 55
HL V F A+E+W + ++PY
Sbjct: 191 EHLYTVRF---TAQELWGPEGDPNSSVYYDCWEPY 222
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.8 bits (62), Expect = 1.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 31 LLHVVFIFFPAREIWPDDVKLYQPYEVEQILLPDNAHCLAVQAYLKMLGLKYTVD--FRK 88
L H IF P + P +KLY Y+ + + LP A +A + +L + + F+K
Sbjct: 8 LKHNGVIFPPPYQPLPSHIKLY--YDGKPVDLPPQAEEVAGF-FAALLESDHAKNPVFQK 64
Query: 89 N 89
N
Sbjct: 65 N 65
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke
(Schistosoma haematobium) [TaxId: 6185]}
Length = 123
Score = 26.9 bits (59), Expect = 1.2
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 155 YKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNN--FFFKDKPTELDALLF 212
+ + + + + + V + E L+ + DK T D +L
Sbjct: 21 LEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLI 80
Query: 213 GHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRI 245
I V YP + +H +
Sbjct: 81 AVIDHVTDLDKEFLTG-----KYPEIHKHRENL 108
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 28.0 bits (62), Expect = 1.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 121 NKNYITWCDPTTYREVTKV 139
NK YI W DP T ++ +
Sbjct: 349 NKAYIEWTDPITKAKINTI 367
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
{Crab-eating macaque (Macaca fascicularis) [TaxId:
9541]}
Length = 161
Score = 27.1 bits (60), Expect = 1.5
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 123 NYITWCDPTTYREVTKVRH-GAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKD 181
+YI E ++ GA A + + K+L +HRL+ D V +D
Sbjct: 50 DYIVREGKFGAVEGAVAKYMGAAAMYLI------SKRLKSRHRLQ---------DNVRED 94
Query: 182 VDKCCQSLSERLEKNN-FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVE 240
+ + + K+ F KP D ++G + + + + ++
Sbjct: 95 LYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLD-----AFDDLMQHTHIQP 149
Query: 241 HCTRIEQ 247
R+E+
Sbjct: 150 WYLRVER 156
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus
smithii [TaxId: 1479]}
Length = 229
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 29 MHLLHVVFIFFPAREIWPDD------VKLYQPY 55
+L V F A E+W + L++ Y
Sbjct: 194 QYLYRVRF---DAEELWGVKQNDSVYIDLWEGY 223
>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 211
Score = 26.4 bits (58), Expect = 3.0
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 10/34 (29%)
Query: 29 MHLLHVVFIFFPAREIWPDD-------VKLYQPY 55
HV F A E++ D V L++ Y
Sbjct: 177 EPTYHVKF---AAEELFGSDTDGGSVVVDLFEGY 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 972,478
Number of extensions: 45297
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)