BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10806
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP ++ G T H +LT
Sbjct: 88 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGL 138
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT DS+ SVA+ +A+ + YTGASMNPARS P
Sbjct: 139 LVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 198
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 165
A+ W HWIYWV PI+G++++ LY+YVF D + K R ++
Sbjct: 199 AVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKE 242
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP ++ G T H +LT
Sbjct: 127 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGL 177
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT D + SVA+ +A+ + YTGASMNPARS P
Sbjct: 178 LVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 237
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 165
A+ W HWIYWV PI+G++++ LY+YVF D + K R ++
Sbjct: 238 AVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKE 281
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP ++ G T H +LT
Sbjct: 88 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGL 138
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT D + SVA+ +A+ + YTGASMNPARS P
Sbjct: 139 LVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 198
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 165
A+ W HWIYWV PI+G++++ LY+YVF D + K R ++
Sbjct: 199 AVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKE 242
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 9/152 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP ++ G T+ H +LT
Sbjct: 79 ISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVV---------GGLGVTMVHGNLTAGHGL 129
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT DS+ S+A+ +A+ + YTGASMNPARS P
Sbjct: 130 LVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGP 189
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 153
A+ W HWIYWV PI+G++++ LY+YVF
Sbjct: 190 AVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++++ + YV +Q+LG + G ++ +TP + H ++ QA
Sbjct: 81 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 131
Query: 62 LAEFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E F T V +D R N + G SVA+ + L + YTGA MNPARS A
Sbjct: 132 IVEIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 190
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYV 152
PAI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 191 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 59 QAFLAEFFSTSLLVFTCCGV---WDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNP 115
+A AEFF+T VF G W VA+ F L +A VG +GA +NP
Sbjct: 11 RAIFAEFFATLFYVFFGLGASLRWAPGPLHV-LQVALAFGLALATLVQAVGHISGAHVNP 69
Query: 116 ARSLAPAIYSNVWTAHWI-YWVAPILGSI 143
A + A + S + I Y VA +LG++
Sbjct: 70 AVTFAFLVGSQMSLLRAICYVVAQLLGAV 98
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++++ + YV +Q+LG + G ++ +TP + H ++ QA
Sbjct: 77 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 127
Query: 62 LAEFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E F T V +D R N + G SVA+ + L + YTGA MNPARS A
Sbjct: 128 IVEIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 186
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYV 152
PAI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 187 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 218
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 59 QAFLAEFFSTSLLVFTCCGV---WDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNP 115
+A AEFF+T VF G W VA+ F L +A VG +GA +NP
Sbjct: 7 RAIFAEFFATLFYVFFGLGASLRWAPGPLHV-LQVALAFGLALATLVQAVGHISGAHVNP 65
Query: 116 ARSLAPAIYSNVWTAHWI-YWVAPILGSI 143
A + A + S + I Y VA +LG++
Sbjct: 66 AVTFAFLVGSQMSLLRAICYVVAQLLGAV 94
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++++ + YV +Q+LG + G ++ +TP + H ++ QA
Sbjct: 75 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 125
Query: 62 LAEFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E F T V +D R N + G SVA+ + L + YTGA MNPARS A
Sbjct: 126 IVEIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 184
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYV 152
PAI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 185 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 216
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 59 QAFLAEFFSTSLLVFTCCGV---WDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNP 115
+A AEFF+T VF G W VA+ F L +A VG +GA +NP
Sbjct: 5 RAIFAEFFATLFYVFFGLGASLRWAPGPLHV-LQVALAFGLALATLVQAVGHISGAHVNP 63
Query: 116 ARSLAPAIYSNVWTAHWI-YWVAPILGSI 143
A + A + S + I Y VA +LG++
Sbjct: 64 AVTFAFLVGSQMSLLRAICYVVAQLLGAV 92
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++++ + Y+ +Q+LG + G ++ +TP + H ++ QA
Sbjct: 81 MSLLRAICYMVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 131
Query: 62 LAEFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E F T V +D R N + G SVA+ + L + YTGA MNPARS A
Sbjct: 132 IVEIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 190
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYV 152
PAI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 191 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 59 QAFLAEFFSTSLLVFTCCGV---WDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNP 115
+A AEFF++ VF G W VA+ F L +A VG +GA +NP
Sbjct: 11 RAICAEFFASLFYVFFGLGASLRWAPGPLHV-LQVALAFGLALATLVQAVGHISGAHVNP 69
Query: 116 ARSLAPAIYSNVWTAHWI-YWVAPILGSI 143
A + A + S + I Y VA +LG++
Sbjct: 70 AVTFAFLVGSQMSLLRAICYMVAQLLGAV 98
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 60
I++ ++Y+ +Q +G ++ +++ IT + L++G + + Q
Sbjct: 88 QISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADG---------VNSGQG 138
Query: 61 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
E T LV D R G S + L +AL + YTG +NPARS
Sbjct: 139 LGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFG 198
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFS-KDHDGKNRPEQLSPADVES 173
A+ ++ ++ HWI+WV P +G ++ L+Y ++ + + D +R + + VE
Sbjct: 199 SAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKVWTSGQVEE 252
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 59 QAFLAEFFSTSLLVFTCCG--------VWDSRNAKFGD-SVAIKFALVIALCSITVGPYT 109
+A +AEF +T+L VF G V +++ A + V++ F L IA + +VG +
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 110 GASMNPARSLAPAIYSNVWTAH-WIYWVAPILGSIVST 146
GA +NPA +L + + +Y +A +G+IV+T
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVAT 109
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 60
I+++ ++Y+ +Q +G ++ +++ IT P +S GL N V + Q
Sbjct: 90 QISVLRAIMYIIAQCVGAIVATAILSGITSS---LPDNSLGL-NALAPGV-----NSGQG 140
Query: 61 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
E T LV D R G S + +AL + YTG +NPARS
Sbjct: 141 LGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFG 200
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFS-KDHDGKNRPEQLSPADVES 173
++ ++ + HWI+WV P +G+ ++ L+Y ++ + + D +R + + VE
Sbjct: 201 SSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVEE 254
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 59 QAFLAEFFSTSLLVFTCCGVW---------DSRNAKFGDSVAIK--FALVIALCSITVGP 107
+A +AEF + L +F G + D+V + F L IA + +VG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 108 YTGASMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 166
+GA +NPA +L + + I Y +A +G+IV+T + + S D L
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 167 SPA 169
+P
Sbjct: 132 APG 134
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I+++ YV +Q++G + G G IL+ V+ + + T QA
Sbjct: 83 ISLLRAFFYVAAQLVGAIAGAG---------ILYGVAPLNARGNLAVNALNNNTTQGQAM 133
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
+ E T L DSR S A+ L + L + +TG SMNPARS P
Sbjct: 134 VVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193
Query: 122 AIYSNVWT-AHWIYWVAPILGSIVSTLLYKYVF 153
A+ N ++ AHW++WV PI+G++++ +LY Y+
Sbjct: 194 AVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLL 226
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDSVAIKFALVIALCSITVGPYTG 110
S+ ++A AEF +T + VF G W S +A+ F L I + +GP +G
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTI-LQIALAFGLAIGTLAQALGPVSG 66
Query: 111 ASMNPARSLAPAIYSNVWTAHWIYWVAPIL 140
+NPA +LA + + + ++VA L
Sbjct: 67 GHINPAITLALLVGNQISLLRAFFYVAAQL 96
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLS--NGFCTTVPHASLTTVQAFLA 63
E+V Y+ +Q+LG G I + G + G T P ++ QA LA
Sbjct: 99 EVVPYIIAQLLGAAFG---------SFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLA 149
Query: 64 EFFSTSLLVFTCCGVW-DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 122
E T LL+ T G+ D R K I L +A T+G +G+S+NPAR+ P
Sbjct: 150 EVVGTFLLMITIMGIAVDERAPK--GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPY 207
Query: 123 IY------SNVWTAHWIYWVAPILGSIVSTLLYKYVFSK 155
+ +++W + IY + PI+G++++ L Y+Y+ S+
Sbjct: 208 LNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ-- 59
++++ ++Y+ +Q LG + GVGLV G N F +L +
Sbjct: 114 VSLLRALVYMIAQCLGAICGVGLVKAFMK----------GPYNQFGGGANSVALGYNKGT 163
Query: 60 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVG----PYTGASMNP 115
A AE T +LV+T D + + V I L I V P TG +NP
Sbjct: 164 ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 223
Query: 116 ARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
ARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 224 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ-- 59
++++ ++Y+ +Q LG + GVGLV G N F +L +
Sbjct: 137 VSLLRALVYMIAQCLGAICGVGLVKAFMK----------GPYNQFGGGANSVALGYNKGT 186
Query: 60 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVG----PYTGASMNP 115
A AE T +LV+T D + + V I L I V P TG +NP
Sbjct: 187 ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 246
Query: 116 ARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
ARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 247 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ-- 59
++++ ++Y+ +Q LG + GVGLV G N F +L +
Sbjct: 114 VSLLRALVYMIAQCLGAICGVGLVKAFMK----------GPYNQFGGGANSVALGYNKGT 163
Query: 60 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVG----PYTGASMNP 115
A AE T +LV+T D + + V I L I V P TG +NP
Sbjct: 164 ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 223
Query: 116 ARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
ARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 224 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ-- 59
+ ++ ++Y+ +Q LG + GVGLV G N F +L +
Sbjct: 137 VELLRALVYMIAQCLGAICGVGLVKAFMK----------GPYNQFGGGANSVALGYNKGT 186
Query: 60 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVG----PYTGASMNP 115
A AE T +LV+T D + + V I L I V P TG +NP
Sbjct: 187 ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 246
Query: 116 ARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
ARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 247 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ-- 59
+ ++ ++Y+ +Q LG + GVGLV G N F +L +
Sbjct: 133 VELLRALVYMIAQCLGAICGVGLVKAFMK----------GPYNQFGGGANSVALGYNKGT 182
Query: 60 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVG----PYTGASMNP 115
A AE T +LV+T D + + V I L I V P TG +NP
Sbjct: 183 ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 242
Query: 116 ARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
ARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 243 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 282
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPV---SSAGLSNGFCTTVPHASLTTVQAFL 62
E+V Y+ +Q +G +G +LF +A G T P + QA L
Sbjct: 100 EVVPYIVAQFIGAALG----------SLLFLACVGPAAATVGGLGATAPFPGIGYGQAIL 149
Query: 63 AEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 122
E T LL+ GV A G + + L + T+G TG+S+NPAR+ P
Sbjct: 150 TEAIGTFLLMLVIMGVAVDERAPPGFA-GLVIGLTVGGIITTIGNITGSSLNPARTFGPY 208
Query: 123 IYS-----NVWTAHWIYWVAPILGSIVSTLLYKYV 152
+ N+W IY + PI+G++ + LY Y+
Sbjct: 209 LGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 37 VSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA-KFGDSVAIKFA 95
V S L+ F +T P+ + VQAF E T++L+ + D N G +
Sbjct: 126 VESVDLAGTF-STYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Query: 96 LVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHW-----------IYWVAPILGSIV 144
L+IA+ ++GP TG +MNPAR P +++ W A W Y++ P+ G IV
Sbjct: 185 LLIAVIGASMGPLTGTAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIV 242
Query: 145 STLLYKYVFSK 155
++ + + K
Sbjct: 243 GAIVGAFAYRK 253
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 62 LAEFFSTSLLVF---TCCGVWDSRNAKFGD-SVAIKFALVIALCSITVGPYTGASMNPAR 117
+AEF T LL+F C A FG +++ F L +A+ +GA +NPA
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 118 SLA 120
++A
Sbjct: 72 TIA 74
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 37 VSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA-KFGDSVAIKFA 95
V S L+ F +T P+ + VQAF E T++L+ + D N G +
Sbjct: 126 VESVDLAGTF-STYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Query: 96 LVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHW-----------IYWVAPILGSIV 144
L+IA+ ++GP TG +MNPAR P +++ W A W Y++ P+ G IV
Sbjct: 185 LLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIV 242
Query: 145 STLLYKYVFSK 155
++ + + K
Sbjct: 243 GAIVGAFAYRK 253
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 62 LAEFFSTSLLVF---TCCGVWDSRNAKFGD-SVAIKFALVIALCSITVGPYTGASMNPAR 117
+AEF T LL+F C A FG +++ + L +A+ +GA +NPA
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 118 SLA 120
++A
Sbjct: 72 TIA 74
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 43 SNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALC 101
SNG+ P + V A L E T+ + G R +AI AL +I L
Sbjct: 144 SNGYGEHSP-GGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLALTLIHLI 202
Query: 102 SITVGPYTGASMNPARSLAPAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
SI P T S+NPARS A++ W W++W+API+G +++K KD
Sbjct: 203 SI---PVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 59 QAFLAEFFSTSLLVFTCCG--VWDSRNAKFG---DSVAIKFALVIALCSITVGPYTGASM 113
+ LAEFF T LVF CG V+ + + G VA+ F L + + VG +G
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 114 NPARSLA 120
NPA S+
Sbjct: 91 NPAVSVG 97
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 80 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 138
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 139 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARSTAVAI 195
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 196 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 230
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 8 VLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFS 67
+L +Q++ + G + +TP EI F + G + + E F
Sbjct: 131 ILMAFTQIVAGMAAAGAASAMTPGEIAFANALGG------------GASRTRGLFLEAFG 178
Query: 68 TSLLVFTCC--GVWDSRNAKFGDSVAIKFALVIA--LCSITVGPYTGASMNPARSLAPAI 123
T++L T V R F V I AL+IA +C YTGA +NPARS PA+
Sbjct: 179 TAILCLTVLMLAVEKHRATWFAPFV-IGIALLIAHLICIY----YTGAGLNPARSFGPAV 233
Query: 124 YSNVW-TAHWIYWVAPILGSIVSTLLYK 150
+ + HWIYW+ PILG+ ++ +++
Sbjct: 234 AARSFPNYHWIYWLGPILGAFLAYSIWQ 261
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGLISI---PVTNFSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGLISI---PVTNFSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNCSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSK 155
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI AL +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNCSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSK 155
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAE 64
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVE 141
Query: 65 FFSTSLLVFTCCGVWDSRNAKFGDSVAIKFA-LVIALCSITVGPYTGASMNPARSLAPAI 123
++ + G D +AI A +I L SI P T S+NPARS A AI
Sbjct: 142 LVLSAGFLLVIHGATDKFAPAGFAPIAIGLACTLIHLISI---PVTNTSVNPARSTAVAI 198
Query: 124 YSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSK 155
+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 199 FQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 95 ALVIALCSITVGPYTGASMNPARSLAPAIYS------NVWTAH----WIYWVAPILGSIV 144
L+I IT G TG ++NP+R L S + +T W+ VAP +GS+V
Sbjct: 174 GLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVV 233
Query: 145 STLLYKYV 152
Y V
Sbjct: 234 FCQFYDKV 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,233,482
Number of Sequences: 62578
Number of extensions: 198111
Number of successful extensions: 356
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 42
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)