Query psy10806
Match_columns 178
No_of_seqs 166 out of 1467
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:57:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223|consensus 100.0 3E-36 6.4E-41 239.2 13.2 145 1-156 83-228 (238)
2 KOG0224|consensus 100.0 4.8E-36 1E-40 240.8 11.5 159 1-159 105-280 (316)
3 PLN00184 aquaporin NIP1; Provi 100.0 3.5E-34 7.7E-39 234.6 15.9 156 1-162 126-281 (296)
4 COG0580 GlpF Glycerol uptake f 100.0 6E-34 1.3E-38 225.6 15.3 152 1-154 80-240 (241)
5 PTZ00016 aquaglyceroporin; Pro 100.0 9.8E-34 2.1E-38 232.4 15.9 155 1-157 122-293 (294)
6 PRK05420 aquaporin Z; Provisio 100.0 8E-33 1.7E-37 220.3 16.8 153 1-156 75-230 (231)
7 PLN00027 aquaporin TIP; Provis 100.0 8.9E-33 1.9E-37 222.6 16.3 144 1-156 97-241 (252)
8 PLN00166 aquaporin TIP2; Provi 100.0 1.9E-32 4.1E-37 220.2 16.6 146 1-158 95-241 (250)
9 PLN00182 putative aquaporin NI 100.0 2.1E-32 4.6E-37 222.9 17.0 142 1-155 114-255 (283)
10 PF00230 MIP: Major intrinsic 100.0 1.1E-32 2.3E-37 219.0 13.0 141 1-149 86-227 (227)
11 PLN00167 aquaporin TIP5; Provi 100.0 6.8E-32 1.5E-36 217.6 16.8 144 1-156 99-242 (256)
12 PLN00026 aquaporin NIP; Provi 100.0 3.5E-32 7.6E-37 222.6 14.1 143 1-157 143-285 (298)
13 cd00333 MIP Major intrinsic pr 100.0 2.8E-31 6E-36 211.3 15.4 152 1-152 73-228 (228)
14 PLN00183 putative aquaporin NI 100.0 1.5E-29 3.3E-34 205.4 15.0 144 1-158 117-260 (274)
15 TIGR00861 MIP MIP family chann 100.0 2.4E-29 5.2E-34 198.7 13.8 141 1-149 73-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.8 4.6E-19 9.9E-24 145.4 10.1 112 45-156 58-174 (298)
17 PLN00184 aquaporin NIP1; Provi 99.8 1.4E-18 3E-23 142.8 10.0 103 54-156 50-157 (296)
18 PLN00183 putative aquaporin NI 99.7 1.3E-17 2.9E-22 135.6 9.8 102 54-155 41-147 (274)
19 PLN00182 putative aquaporin NI 99.7 6E-17 1.3E-21 132.3 9.3 106 48-154 33-143 (283)
20 PLN00167 aquaporin TIP5; Provi 99.7 1.1E-16 2.4E-21 129.2 10.2 105 51-155 15-129 (256)
21 PLN00166 aquaporin TIP2; Provi 99.7 8.2E-17 1.8E-21 129.7 9.3 100 55-154 15-124 (250)
22 PTZ00016 aquaglyceroporin; Pro 99.7 1.3E-16 2.9E-21 131.2 9.0 107 50-156 42-153 (294)
23 PLN00027 aquaporin TIP; Provis 99.7 3.8E-16 8.3E-21 126.0 9.6 99 56-154 18-126 (252)
24 cd00333 MIP Major intrinsic pr 99.7 2.3E-16 5.1E-21 125.5 7.5 102 59-160 1-108 (228)
25 PRK05420 aquaporin Z; Provisio 99.7 5.7E-16 1.2E-20 123.5 9.3 98 58-155 2-105 (231)
26 TIGR00861 MIP MIP family chann 99.6 8.9E-15 1.9E-19 115.6 9.3 95 63-157 1-105 (216)
27 COG0580 GlpF Glycerol uptake f 99.6 1E-14 2.2E-19 116.0 8.6 106 56-161 3-116 (241)
28 KOG0224|consensus 99.5 2E-14 4.3E-19 116.3 5.4 106 55-160 29-140 (316)
29 KOG0223|consensus 99.5 1.8E-13 3.9E-18 109.1 9.8 103 54-156 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.4 2.3E-13 4.9E-18 108.1 7.4 102 55-156 5-117 (227)
31 COG2116 FocA Formate/nitrite f 83.1 18 0.0004 29.6 9.7 153 1-158 101-262 (265)
32 PRK11427 multidrug efflux syst 75.6 68 0.0015 29.9 12.0 28 4-31 395-422 (683)
33 PRK11562 nitrite transporter N 74.4 7.6 0.00016 31.8 5.1 151 1-161 95-257 (268)
34 KOG3030|consensus 71.9 15 0.00032 30.9 6.4 48 110-157 210-266 (317)
35 PRK10478 putative PTS system f 69.3 18 0.00039 30.9 6.4 25 130-154 312-336 (359)
36 COG0306 PitA Phosphate/sulphat 64.7 73 0.0016 26.9 9.1 25 134-158 139-163 (326)
37 COG3301 NrfD Formate-dependent 59.5 1E+02 0.0022 25.6 9.8 45 109-155 223-270 (305)
38 PF04632 FUSC: Fusaric acid re 58.8 1.4E+02 0.0031 27.0 12.8 109 3-156 385-493 (650)
39 PRK14217 camphor resistance pr 56.4 75 0.0016 23.1 7.5 109 14-151 9-121 (134)
40 PRK14222 camphor resistance pr 50.5 90 0.002 22.3 6.6 109 14-151 7-119 (124)
41 PF01384 PHO4: Phosphate trans 49.3 1.6E+02 0.0034 24.7 10.8 23 135-157 127-149 (326)
42 PRK14219 camphor resistance pr 48.4 1E+02 0.0022 22.3 6.9 108 15-151 7-118 (132)
43 PRK14231 camphor resistance pr 44.7 1.2E+02 0.0025 21.9 8.1 108 13-152 5-116 (129)
44 PF03918 CcmH: Cytochrome C bi 42.0 8.5 0.00018 28.6 0.0 31 130-160 100-130 (148)
45 PF01102 Glycophorin_A: Glycop 41.3 19 0.00041 25.9 1.7 20 138-157 73-92 (122)
46 PRK14195 camphor resistance pr 40.3 1.4E+02 0.0029 21.4 7.4 109 13-150 6-118 (125)
47 TIGR00790 fnt formate/nitrite 38.9 2E+02 0.0043 22.9 7.8 76 1-78 80-158 (239)
48 PRK09713 focB putative formate 37.4 2.4E+02 0.0051 23.3 9.1 26 54-79 157-182 (282)
49 PRK14227 camphor resistance pr 36.8 1.6E+02 0.0034 21.1 7.3 110 13-151 6-119 (124)
50 PRK14198 camphor resistance pr 36.1 1.6E+02 0.0035 21.0 7.5 108 14-150 6-117 (124)
51 KOG1330|consensus 35.5 43 0.00094 29.8 3.3 29 130-158 187-215 (493)
52 PF09512 ThiW: Thiamine-precur 34.2 37 0.0008 25.4 2.3 19 56-74 88-106 (150)
53 PRK14200 camphor resistance pr 34.2 1.8E+02 0.0038 20.9 8.0 110 14-152 10-123 (127)
54 PF12606 RELT: Tumour necrosis 33.3 1.1E+02 0.0024 18.4 4.0 19 140-158 12-30 (50)
55 PF14034 Spore_YtrH: Sporulati 33.3 47 0.001 23.1 2.6 46 110-155 53-101 (102)
56 PRK10805 formate transporter; 31.2 3E+02 0.0065 22.7 11.2 77 1-79 104-183 (285)
57 PRK14218 camphor resistance pr 30.4 2.1E+02 0.0046 20.7 8.5 108 15-151 14-125 (133)
58 PF14990 DUF4516: Domain of un 30.3 1.2E+02 0.0027 18.0 4.1 33 2-34 5-37 (47)
59 PF14241 DUF4341: Domain of un 29.7 37 0.00079 21.3 1.5 54 89-144 7-60 (62)
60 PRK14206 camphor resistance pr 29.6 2.1E+02 0.0046 20.4 7.2 110 14-150 6-119 (127)
61 PRK14215 camphor resistance pr 29.3 2.2E+02 0.0047 20.4 7.6 112 12-152 5-120 (126)
62 PRK09979 putative rho operon l 29.3 19 0.00041 19.0 0.1 17 107-123 5-21 (33)
63 PRK14203 camphor resistance pr 29.0 2.2E+02 0.0049 20.5 8.1 113 12-151 9-125 (132)
64 PF09163 Form-deh_trans: Forma 28.8 94 0.002 18.2 3.0 19 139-157 20-38 (44)
65 PRK14208 camphor resistance pr 28.6 2.2E+02 0.0048 20.3 7.6 110 12-150 5-118 (126)
66 cd01118 ArsB_permease Anion pe 28.0 2.7E+02 0.0059 23.6 7.1 31 127-157 169-200 (416)
67 PLN02250 lipid phosphate phosp 27.9 2.6E+02 0.0055 23.5 6.6 23 135-157 227-249 (314)
68 PF07172 GRP: Glycine rich pro 26.2 77 0.0017 21.7 2.7 11 139-149 8-18 (95)
69 TIGR02854 spore_II_GA sigma-E 25.3 2.2E+02 0.0048 23.4 5.7 42 15-78 37-78 (288)
70 PF13940 Ldr_toxin: Toxin Ldr, 24.5 76 0.0016 17.5 1.9 22 132-153 11-32 (35)
71 PRK14234 camphor resistance pr 24.0 2.7E+02 0.0059 19.8 7.6 104 14-149 8-118 (124)
72 PRK14199 camphor resistance pr 22.7 3E+02 0.0064 19.8 8.4 115 6-150 3-121 (128)
73 COG3448 CBS-domain-containing 22.0 5E+02 0.011 22.1 11.9 77 4-80 25-104 (382)
74 COG0707 MurG UDP-N-acetylgluco 20.6 58 0.0013 27.7 1.5 24 105-128 6-29 (357)
No 1
>KOG0223|consensus
Probab=100.00 E-value=3e-36 Score=239.22 Aligned_cols=145 Identities=37% Similarity=0.727 Sum_probs=134.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHh-hc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCG-VW 79 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~-~~ 79 (178)
++++.|.+.|+++|++|+++|+++++.+.+++.+ ..+.+.+.+.++.+.+|+++.|++.||.|++++++ .+
T Consensus 83 ~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~ 154 (238)
T KOG0223|consen 83 KISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYN--------RKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATAT 154 (238)
T ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHheecCcccc--------cCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEee
Confidence 5899999999999999999999999999988522 23456667778899999999999999999999999 78
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 80 DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 80 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
|+|+. .+.|+.||+++.+.+++.+++||++|||||+|||++..+.|+++||||+||++|+++++++|++++.++
T Consensus 155 d~~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 155 DPRRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred cCCCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 88876 589999999999999999999999999999999999999999999999999999999999999998887
No 2
>KOG0224|consensus
Probab=100.00 E-value=4.8e-36 Score=240.75 Aligned_cols=159 Identities=21% Similarity=0.401 Sum_probs=145.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHccccccccc------CCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHH
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPV------SSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFT 74 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~ 74 (178)
|+||+|++.|+++|++||++|++.+|.+|++.+++.. ..+..++++++|+|.++++.+++|+.|+++|.+|+..
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~ 184 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC 184 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999887542 3445688999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-----------ccccceecchhhhHHHH
Q psy10806 75 CCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-----------VWTAHWIYWVAPILGSI 143 (178)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-----------~~~~~wvy~v~p~~Ga~ 143 (178)
+++++|+||....+..|+.+|+.+.++.++.|.++|..+|||||||||++.. ...+.|+.|++|++|++
T Consensus 185 l~aI~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai 264 (316)
T KOG0224|consen 185 LFAITDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAI 264 (316)
T ss_pred eeEEecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhh
Confidence 9999999997777899999999999999999999999999999999999841 11588999999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy10806 144 VSTLLYKYVFSKDHDG 159 (178)
Q Consensus 144 ~a~~~~~~~~~~~~~~ 159 (178)
+++++|++++..+.++
T Consensus 265 ~G~~iY~~~Ig~h~~~ 280 (316)
T KOG0224|consen 265 LGGWIYDFFIGFHIPR 280 (316)
T ss_pred hhhhhheeeeeccCCC
Confidence 9999999999888763
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=3.5e-34 Score=234.62 Aligned_cols=156 Identities=29% Similarity=0.465 Sum_probs=129.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++||++|+++++.+++..... .........++.|. .+.+++|+.|+++||+|+++++++.+
T Consensus 126 ~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~---~~~~~~~~~~t~p~--~s~~~af~~E~i~TfvLv~~il~~~~ 200 (296)
T PLN00184 126 RFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDV---CSGKHDVFIGSSPV--GSDLQAFVMEFIVTFYLMFIISGVAT 200 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc---cccccceeeccCcC--CcHHHHHHHHHHHHHHHHHHHHheec
Confidence 57999999999999999999999999998653321 11111123344453 48999999999999999999999865
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccCCCCC
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGK 160 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~ 160 (178)
+++. .....|++||+++.+++++.+++||++|||||||||+++.+.|+++||||+||++|+++++++|+++...+.+..
T Consensus 201 ~~~~-~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~ 279 (296)
T PLN00184 201 DNRA-IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLR 279 (296)
T ss_pred cCcC-CCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcch
Confidence 4332 234789999999999999999999999999999999999999999999999999999999999999987665544
Q ss_pred CC
Q psy10806 161 NR 162 (178)
Q Consensus 161 ~~ 162 (178)
+.
T Consensus 280 ~~ 281 (296)
T PLN00184 280 EI 281 (296)
T ss_pred hh
Confidence 33
No 4
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-34 Score=225.62 Aligned_cols=152 Identities=30% Similarity=0.484 Sum_probs=134.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
++||+|++.|++||++||++|+.++|.++++...+.+.++....+.+++.|... +..++|+.|+++||+|++.+++.+|
T Consensus 80 ~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~-~~~~~fl~E~v~T~~L~~~Ila~~~ 158 (241)
T COG0580 80 RFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGY-SLGQAFLIEFVGTFVLVLGILALTD 158 (241)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcc-cHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999877654446667788899999855 8999999999999999999999886
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc---------ccccceecchhhhHHHHHHHHHHHH
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN---------VWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~---------~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
.++. ..+..|+.||+.++.+.++.++.||.++|||||||||+... ++.|+|+||++|++|+++++++|+.
T Consensus 159 ~~~~-~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~ 237 (241)
T COG0580 159 DGNA-NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKL 237 (241)
T ss_pred cCcc-cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHH
Confidence 4444 44599999999999999999999999999999999999532 3359999999999999999999998
Q ss_pred Hhc
Q psy10806 152 VFS 154 (178)
Q Consensus 152 ~~~ 154 (178)
++.
T Consensus 238 ~~~ 240 (241)
T COG0580 238 LLG 240 (241)
T ss_pred Hcc
Confidence 764
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=9.8e-34 Score=232.35 Aligned_cols=155 Identities=25% Similarity=0.366 Sum_probs=131.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccC-------CCCCccceeecCCCCCccHHHHHHHHHHHHHHHHH
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVS-------SAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVF 73 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~ 73 (178)
+++|++.+.|+++|++||++|++++|.++++.+...+. .+....+.+++.| +.+..++++.|+++||+|++
T Consensus 122 ~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p--~~s~~~a~~~E~i~T~iLv~ 199 (294)
T PTZ00016 122 KFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYP--REGNFYAIFSELILTAILLL 199 (294)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCC--CccHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999875432111 0123345667776 57899999999999999999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhc------cccc----cceecchhhhHHHH
Q psy10806 74 TCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS------NVWT----AHWIYWVAPILGSI 143 (178)
Q Consensus 74 ~i~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~------~~~~----~~wvy~v~p~~Ga~ 143 (178)
++++++|+++....+..|+++|+++.+++++.++.||++||||||||||++. ..|+ ++||||+||++|++
T Consensus 200 ~ila~~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~ 279 (294)
T PTZ00016 200 VILAITDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAV 279 (294)
T ss_pred HHHHhccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHH
Confidence 9999999877654457899999999999999999999999999999999986 2454 68999999999999
Q ss_pred HHHHHHHHHhccCC
Q psy10806 144 VSTLLYKYVFSKDH 157 (178)
Q Consensus 144 ~a~~~~~~~~~~~~ 157 (178)
+++++|++++++..
T Consensus 280 ~aally~~ll~~~~ 293 (294)
T PTZ00016 280 LGMFLYDKFIPPLI 293 (294)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999987653
No 6
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=8e-33 Score=220.30 Aligned_cols=153 Identities=29% Similarity=0.556 Sum_probs=125.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccC-CCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVS-SAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVW 79 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~ 79 (178)
+++|++.+.|+++|++||++|++++|.++++....... +.....+...+.|. ..+..++++.|+++|++|+++++.++
T Consensus 75 ~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~v~T~iLv~~i~~~~ 153 (231)
T PRK05420 75 RFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPG-GYSLLAALVCEVVLTAFFLLVILGAT 153 (231)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCC-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999988653221100 00111122233443 45789999999999999999999998
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcccc--ccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 80 DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVW--TAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 80 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~--~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
|+++. ....|+.+|+.+..+.++.+++||++|||||||||++++++| +++|+||++|++|+++++++|+++++++
T Consensus 154 ~~~~~--~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 154 DKRAP--AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred CCCCC--CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 87653 347899999999999999999999999999999999998866 5899999999999999999999987543
No 7
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=8.9e-33 Score=222.61 Aligned_cols=144 Identities=29% Similarity=0.528 Sum_probs=123.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhc-
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVW- 79 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~- 79 (178)
+++|.+...|+++|++||++|+.+++.+.++... +.+.+.| +.+.+++++.|+++||+|+++++.+.
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~E~i~Tf~Lv~~i~~~~~ 164 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGGLET----------SAFSLSS--GVGVWNAFVFEIVMTFGLVYTVYATAV 164 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----------ccccCCC--CccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999887654211 2233333 67899999999999999999999874
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 80 DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 80 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
|+++.....+.|+.+|+.+..++++.+++||++|||||||||++++++|+++||||+||++|+++++++|++++.++
T Consensus 165 ~~~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 241 (252)
T PLN00027 165 DPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGS 241 (252)
T ss_pred ccccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55543333588999999999999999999999999999999999999999999999999999999999999998553
No 8
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1.9e-32 Score=220.24 Aligned_cols=146 Identities=29% Similarity=0.533 Sum_probs=123.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++|+++|+.+.+.++++... ... ...++.+..++++.|+++||+|+++++.+.+
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~ 162 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTNGESV-------PTH-----GVAAGLGAIEGVVMEIVVTFALVYTVYATAA 162 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------ccc-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999988754211 001 1123568899999999999999999999765
Q ss_pred CCCC-CCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccCCC
Q psy10806 81 SRNA-KFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHD 158 (178)
Q Consensus 81 ~~~~-~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~ 158 (178)
+++. ......|+.+|+.++.+++..+++||++|||||||||++++++|+++|+||+||++|+++++++|+.++.+..+
T Consensus 163 ~~~~~~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~ 241 (250)
T PLN00166 163 DPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYA 241 (250)
T ss_pred cccccccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 4433 22347899999999999999999999999999999999999999999999999999999999999988754443
No 9
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=2.1e-32 Score=222.91 Aligned_cols=142 Identities=31% Similarity=0.512 Sum_probs=122.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++||++|+++++.+++... .+.+.+.|. .+.+++++.|+++||+|+++++++.+
T Consensus 114 ~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~----------~~~~~~~p~--~s~~~a~~~E~l~TfiLv~~i~~~~~ 181 (283)
T PLN00182 114 RFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP----------EAFFGTTPT--DSSGQALVAEIIISFLLMFVISGVAT 181 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------cceeeCCCC--cchHHHHHHHHHHHHHHHHHHHhhee
Confidence 579999999999999999999999999985321 133445554 57899999999999999999998754
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhcc
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
+++. .....++++|+++++..++.+++||+++||||||||+++.+.|.++|+||++|++|+++++++|+++..+
T Consensus 182 ~~~~-~~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 182 DSRA-VGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred cccc-CCcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4332 2346899999999999999999999999999999999998899999999999999999999999998754
No 10
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.1e-32 Score=219.04 Aligned_cols=141 Identities=35% Similarity=0.710 Sum_probs=126.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+++.|+++|++|+++|+.+++.++++... ..+.+.+.|.++.+..++++.|+++|++|+++++.+.|
T Consensus 86 ~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~--------~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~ 157 (227)
T PF00230_consen 86 RISWKKAIVYIIAQFLGAFLGALLVYALYPDSNS--------AAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVAD 157 (227)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHT--------CTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred eecccceeeEEeeccccccccccchhhcccCccc--------ccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcc
Confidence 6899999999999999999999999999987522 22345566777899999999999999999999999998
Q ss_pred CCCCCC-CChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHH
Q psy10806 81 SRNAKF-GDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLY 149 (178)
Q Consensus 81 ~~~~~~-~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~ 149 (178)
+++... ....|+.+|+++.+..+..++.||+++||||+|+|+++.+.|+++||||++|++|+++|+++|
T Consensus 158 ~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 158 DKRKFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTSSSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccceeEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 887665 347899999999999999999999999999999999999999999999999999999999987
No 11
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=6.8e-32 Score=217.57 Aligned_cols=144 Identities=27% Similarity=0.407 Sum_probs=124.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|++.+.|+++|++||++|+++++.++++... ......++.+.+++++.|+++|++|+++++.++|
T Consensus 99 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~------------~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 166 (256)
T PLN00167 99 HISVPTAMFYWISQMLASVMACLFLKVTTVGQHV------------PTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGD 166 (256)
T ss_pred CCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc------------cccccCcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999988764221 0011122457789999999999999999999988
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
+++.......|+.+|+++..+.++.+++||+++||||||||+++.+.|+++|+||+||++|+++++++|++++.+.
T Consensus 167 ~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~ 242 (256)
T PLN00167 167 PRRGLLGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPT 242 (256)
T ss_pred ccccCCCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCC
Confidence 7765444578999999999999999999999999999999999998999999999999999999999999988644
No 12
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=3.5e-32 Score=222.59 Aligned_cols=143 Identities=31% Similarity=0.443 Sum_probs=123.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++||++|+++++.++++... . +.+.| +.+.+++++.|+++||+|+++++++.+
T Consensus 143 ~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---------~--g~t~p--~~s~~~a~~~Efi~TfiLv~vi~~v~~ 209 (298)
T PLN00026 143 HFPWKHVPAYIAAQVSASICASFALKGVFHPFMS---------G--GVTVP--SVSTGQAFALEFIITFNLLFVVTAVAT 209 (298)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------C--ceeee--cccHHHHHHHHHHHHHHHHHhheeeec
Confidence 5799999999999999999999999999876321 1 12444 568999999999999999999998753
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccCC
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~ 157 (178)
+++. .....++++|+++++.+++.+++||++|||||||+|+++.++|+++|+||+||++|+++++++|+++..++.
T Consensus 210 ~~~~-~~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~ 285 (298)
T PLN00026 210 DTRA-VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREE 285 (298)
T ss_pred CCCC-cCCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3322 223678999999999999999999999999999999999999999999999999999999999999755554
No 13
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.97 E-value=2.8e-31 Score=211.29 Aligned_cols=152 Identities=32% Similarity=0.652 Sum_probs=130.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|++.+.|+++|++|+++|+.+++.++++...+.+..+....+.+++.|.++.+.+++++.|+++|++|+++++.+.+
T Consensus 73 ~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~ 152 (228)
T cd00333 73 RFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTD 152 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57899999999999999999999999999876653222222122356677888889999999999999999999999987
Q ss_pred CCCC-CCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccc---cccceecchhhhHHHHHHHHHHHHH
Q psy10806 81 SRNA-KFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNV---WTAHWIYWVAPILGSIVSTLLYKYV 152 (178)
Q Consensus 81 ~~~~-~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~---~~~~wvy~v~p~~Ga~~a~~~~~~~ 152 (178)
+++. ......|+.+|+.+....+..+++||+++||||||+|+++++. |+++|+||++|++|+++++++|+++
T Consensus 153 ~~~~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 153 DPNGPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 7654 2334789999999999999999999999999999999999875 9999999999999999999999863
No 14
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.97 E-value=1.5e-29 Score=205.40 Aligned_cols=144 Identities=26% Similarity=0.476 Sum_probs=124.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++|+++|+.+++.+++... +...+.|. .+.+++++.|+++|++|+++++++++
T Consensus 117 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----------~~~~~~p~--~~~~~~~~~E~v~T~iLv~~i~~~~~ 183 (274)
T PLN00183 117 HFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----------DLMTTKPA--QGCSSAFWVEFIATFIVMFLAASLTS 183 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------ccccCCCc--ccHHHHHHHHHHHHHHHHHhhheeec
Confidence 478999999999999999999999999886421 23334443 46789999999999999999999877
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccCCC
Q psy10806 81 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHD 158 (178)
Q Consensus 81 ~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~ 158 (178)
+++. .....++.+|+.+.+.+++.+++||+++||||+|+|++++.+|+++|+||++|++|+++++++|++++.+...
T Consensus 184 ~~~~-~~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 184 QPQS-LGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred cccC-CCCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 6532 2236799999999999999999999999999999999999999999999999999999999999999866543
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.96 E-value=2.4e-29 Score=198.67 Aligned_cols=141 Identities=33% Similarity=0.655 Sum_probs=120.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
+++|.+.+.|+++|++|+++|+.+++.++++....+ .. ....+.++.+.+++++.|+++|++|+++++.+.+
T Consensus 73 ~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~ 144 (216)
T TIGR00861 73 RFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGN-------LA-VNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTD 144 (216)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCC-------cc-ccCCCCCcccHHHHHHHHHHHHHHHHHHHheeec
Confidence 579999999999999999999999999988754210 00 1222334578999999999999999999999987
Q ss_pred CCCCCCCC-hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc--ccccceecchhhhHHHHHHHHHH
Q psy10806 81 SRNAKFGD-SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN--VWTAHWIYWVAPILGSIVSTLLY 149 (178)
Q Consensus 81 ~~~~~~~~-~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~--~~~~~wvy~v~p~~Ga~~a~~~~ 149 (178)
+++....+ ..|+.+|+.+...++..+++||+++||||||+|+++++ +|+++|+||++|++|+++++++|
T Consensus 145 ~~~~~~~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 145 PRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 76543333 78999999999999999999999999999999999987 89999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.79 E-value=4.6e-19 Score=145.41 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=93.4
Q ss_pred ceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHH
Q psy10806 45 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDS--RNAKFGD--SVAIKFALVIALCSITVGPYTGASMNPARSLA 120 (178)
Q Consensus 45 ~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~--~~~~~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg 120 (178)
...++.|.++.+.++.++.|+++||+|++++++.... +...... ..++.+|+++++.+++++++||+|+||||+++
T Consensus 58 ~~~~~~~~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla 137 (298)
T PLN00026 58 TCFCDLPPPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIA 137 (298)
T ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 3455667777889999999999999999999875322 1111112 34689999999999999999999999999999
Q ss_pred HHHhcc-ccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 121 PAIYSN-VWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 121 ~~l~~~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
+++.++ .|.+.|+||++|++|+++|+++++.++.+.
T Consensus 138 ~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 138 FAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999876 899999999999999999999999888653
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.77 E-value=1.4e-18 Score=142.76 Aligned_cols=103 Identities=26% Similarity=0.378 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCCh--hHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-cc
Q psy10806 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAK--FGDS--VAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VW 128 (178)
Q Consensus 54 ~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~--~~~~--~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 128 (178)
+.+.++.++.|+++||+|+++++++...+... ..+. .++.+|+.+++.+++++++||+|+||||+|++++.++ .|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 44678999999999999999999875332211 1123 4566699999999999999999999999999999887 89
Q ss_pred ccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 129 TAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 129 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
.+.|+||++|++|+++|+++++.++...
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999888643
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.73 E-value=1.3e-17 Score=135.65 Aligned_cols=102 Identities=25% Similarity=0.435 Sum_probs=88.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhccCCCCCC--CCh--hHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-cc
Q psy10806 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKF--GDS--VAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VW 128 (178)
Q Consensus 54 ~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~--~~~--~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 128 (178)
+.+.++.++.|+++||+++++++++.+.++... .+. .++.+|+.+.+.+++.+++||+|+||||+|++++.++ .|
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~ 120 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPW 120 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCH
Confidence 567889999999999999999998865533211 122 5779999999999999999999999999999999987 79
Q ss_pred ccceecchhhhHHHHHHHHHHHHHhcc
Q psy10806 129 TAHWIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 129 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
...|+||++|++|+++|+.+++.++..
T Consensus 121 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 121 SKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888764
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.70 E-value=6e-17 Score=132.30 Aligned_cols=106 Identities=25% Similarity=0.460 Sum_probs=88.7
Q ss_pred ecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHH
Q psy10806 48 TTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA--KFGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAI 123 (178)
Q Consensus 48 ~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~--~~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l 123 (178)
.+.|. ..+.++.++.|+++||+|+++.+++...... .... ..++++|+.++..+++++++||+|+|||+++++++
T Consensus 33 ~~~p~-~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~ 111 (283)
T PLN00182 33 CTSPS-IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAI 111 (283)
T ss_pred hcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHH
Confidence 34554 5677899999999999999999886543211 1112 34668999999999999999999999999999999
Q ss_pred hcc-ccccceecchhhhHHHHHHHHHHHHHhc
Q psy10806 124 YSN-VWTAHWIYWVAPILGSIVSTLLYKYVFS 154 (178)
Q Consensus 124 ~~~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 154 (178)
.++ .|.+.|+||++|++|+++++++.+.++.
T Consensus 112 ~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 112 FRRFPWYQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988 8999999999999999999999988874
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=99.70 E-value=1.1e-16 Score=129.24 Aligned_cols=105 Identities=24% Similarity=0.366 Sum_probs=88.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhccCCC---CC----CC--ChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHH
Q psy10806 51 PHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRN---AK----FG--DSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121 (178)
Q Consensus 51 p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~---~~----~~--~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~ 121 (178)
+....+.++.++.|+++||+|+++.+++...++ .. .. ...++.+|+.+++.+++++++||+|+|||+++++
T Consensus 15 ~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~ 94 (256)
T PLN00167 15 QSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGM 94 (256)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHH
Confidence 333456789999999999999999998865321 11 01 1579999999999999999999999999999999
Q ss_pred HHhcc-ccccceecchhhhHHHHHHHHHHHHHhcc
Q psy10806 122 AIYSN-VWTAHWIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 122 ~l~~~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
.+.++ .|...|+||++|++|+++++.+++.++..
T Consensus 95 ~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 95 AVGGHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred HHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99876 69999999999999999999999887654
No 21
>PLN00166 aquaporin TIP2; Provisional
Probab=99.69 E-value=8.2e-17 Score=129.66 Aligned_cols=100 Identities=32% Similarity=0.495 Sum_probs=85.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCC---C--CC--CCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhc
Q psy10806 55 LTTVQAFLAEFFSTSLLVFTCCGVWDSR---N--AK--FGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS 125 (178)
Q Consensus 55 ~s~~~~~~~E~~~Tf~l~~~i~~~~~~~---~--~~--~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~ 125 (178)
.+.+++++.|+++||+|+++.+++.+.. . .. ..+ ..++.+|+.+++.+++++++||+|+||||++++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 5678999999999999999999975431 1 10 112 3678899999999999999999999999999999986
Q ss_pred c-ccccceecchhhhHHHHHHHHHHHHHhc
Q psy10806 126 N-VWTAHWIYWVAPILGSIVSTLLYKYVFS 154 (178)
Q Consensus 126 ~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 154 (178)
+ .|.+.|+||++|++|+++++.+++.++.
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~ 124 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTN 124 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 6899999999999999999999998764
No 22
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.68 E-value=1.3e-16 Score=131.18 Aligned_cols=107 Identities=25% Similarity=0.429 Sum_probs=89.4
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCC-C-CCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhc
Q psy10806 50 VPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA-K-FGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS 125 (178)
Q Consensus 50 ~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~-~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~ 125 (178)
.+....+.++.++.|+++||+|+++.+++...... . ..+ ..++.+|+.+...+++.+++||+|+|||+++++++.+
T Consensus 42 ~~~~~~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g 121 (294)
T PTZ00016 42 APREYRPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFG 121 (294)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhc
Confidence 34333567799999999999999999887643221 1 112 4678899999999999999999999999999999998
Q ss_pred c-ccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 126 N-VWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 126 ~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
+ .|...|+||++|++|+++|+++.+.++++.
T Consensus 122 ~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 122 KFPWKKLPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8 899999999999999999999988887654
No 23
>PLN00027 aquaporin TIP; Provisional
Probab=99.66 E-value=3.8e-16 Score=126.01 Aligned_cols=99 Identities=28% Similarity=0.430 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc---C---CCCC-CCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc
Q psy10806 56 TTVQAFLAEFFSTSLLVFTCCGVWD---S---RNAK-FGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN 126 (178)
Q Consensus 56 s~~~~~~~E~~~Tf~l~~~i~~~~~---~---~~~~-~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~ 126 (178)
..++.++.|+++||+|+++.+++.. . ++.. ..+ ..++.+|+.+.+.+++.+++||+|+||||++++.+.++
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 5679999999999999999988631 1 1111 112 57999999999999999999999999999999998765
Q ss_pred -ccccceecchhhhHHHHHHHHHHHHHhc
Q psy10806 127 -VWTAHWIYWVAPILGSIVSTLLYKYVFS 154 (178)
Q Consensus 127 -~~~~~wvy~v~p~~Ga~~a~~~~~~~~~ 154 (178)
.|...|+||++|++|+++++++++.+..
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999987653
No 24
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.66 E-value=2.3e-16 Score=125.54 Aligned_cols=102 Identities=28% Similarity=0.377 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCC---CCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-ccccce
Q psy10806 59 QAFLAEFFSTSLLVFTCCGVWDSRNAK---FGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VWTAHW 132 (178)
Q Consensus 59 ~~~~~E~~~Tf~l~~~i~~~~~~~~~~---~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~~w 132 (178)
|.++.|+++||+++++.+++..+++.. ..+ ..++.+|+.+...++..+++||+++|||+++++.+.++ +|.+.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 357899999999999999976443211 112 56899999999999999999999999999999999977 799999
Q ss_pred ecchhhhHHHHHHHHHHHHHhccCCCCC
Q psy10806 133 IYWVAPILGSIVSTLLYKYVFSKDHDGK 160 (178)
Q Consensus 133 vy~v~p~~Ga~~a~~~~~~~~~~~~~~~ 160 (178)
+||++|++|+++++.+++.+++++.++.
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~ 108 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEF 108 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 9999999999999999998887655443
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.65 E-value=5.7e-16 Score=123.52 Aligned_cols=98 Identities=27% Similarity=0.302 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC--CC-CCCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-ccccc
Q psy10806 58 VQAFLAEFFSTSLLVFTCCGVWDSR--NA-KFGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VWTAH 131 (178)
Q Consensus 58 ~~~~~~E~~~Tf~l~~~i~~~~~~~--~~-~~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~~ 131 (178)
.+.++.|+++||+|+++.++..... .. ...+ ..++.+|+.+.+.+++++++||+|+|||+++++.+.++ +|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 5889999999999999988763211 11 1112 35899999999999999999999999999999999976 79999
Q ss_pred eecchhhhHHHHHHHHHHHHHhcc
Q psy10806 132 WIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 132 wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
|+||++|++|+++++.+.+.+++.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999777766643
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.58 E-value=8.9e-15 Score=115.59 Aligned_cols=95 Identities=32% Similarity=0.383 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhhccC---CC--CCCC--C--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-ccccce
Q psy10806 63 AEFFSTSLLVFTCCGVWDS---RN--AKFG--D--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VWTAHW 132 (178)
Q Consensus 63 ~E~~~Tf~l~~~i~~~~~~---~~--~~~~--~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~~w 132 (178)
.|+++||+|+++.+++... +. .... + ..++.+|+.+...+++.+++||+|+|||+++++.+.++ +|.+.|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 4999999999999987533 11 1111 1 57899999999999999999999999999999999987 899999
Q ss_pred ecchhhhHHHHHHHHHHHHHhccCC
Q psy10806 133 IYWVAPILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 133 vy~v~p~~Ga~~a~~~~~~~~~~~~ 157 (178)
+||++|++|+++++++++.++++..
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~ 105 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLF 105 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc
Confidence 9999999999999999988877654
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1e-14 Score=116.04 Aligned_cols=106 Identities=26% Similarity=0.381 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccC----C--CCCCC-ChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-c
Q psy10806 56 TTVQAFLAEFFSTSLLVFTCCGVWDS----R--NAKFG-DSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-V 127 (178)
Q Consensus 56 s~~~~~~~E~~~Tf~l~~~i~~~~~~----~--~~~~~-~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~ 127 (178)
+..+.++.|+++|++|++...++... + +.... ....+..|+.+.+.+++.+++||+|+|||.+++.++.++ +
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 45677899999999999998776321 1 11111 257899999999999999999999999999999999987 8
Q ss_pred cccceecchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy10806 128 WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKN 161 (178)
Q Consensus 128 ~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~~ 161 (178)
|++.-.||++|++|+++++.+...++.++..+.+
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 9999999999999999999888888888776665
No 28
>KOG0224|consensus
Probab=99.50 E-value=2e-14 Score=116.28 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=88.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCCCC-----CCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-cc
Q psy10806 55 LTTVQAFLAEFFSTSLLVFTCCGVWDSRNAK-----FGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VW 128 (178)
Q Consensus 55 ~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~-----~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 128 (178)
....+.+++|+++|++|++..+++..+.... .-....+..|+.++..+++.+.+||+|+|||.+|+..++++ .|
T Consensus 29 ~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~ 108 (316)
T KOG0224|consen 29 NELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPW 108 (316)
T ss_pred HHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCCh
Confidence 3578999999999999999988875432211 11266888999999999999999999999999999999987 89
Q ss_pred ccceecchhhhHHHHHHHHHHHHHhccCCCCC
Q psy10806 129 TAHWIYWVAPILGSIVSTLLYKYVFSKDHDGK 160 (178)
Q Consensus 129 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~ 160 (178)
.++.+|.++|++||.+++.....++.+...+-
T Consensus 109 ~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f 140 (316)
T KOG0224|consen 109 KKFPVYVLAQFIGAFLGAATVYGLYYDAINEF 140 (316)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887777666554433
No 29
>KOG0223|consensus
Probab=99.49 E-value=1.8e-13 Score=109.08 Aligned_cols=103 Identities=31% Similarity=0.428 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCC--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-cc
Q psy10806 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRN--AKFGD--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-VW 128 (178)
Q Consensus 54 ~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~--~~~~~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 128 (178)
..+.+|.++.||++|++++|+.++...... ....+ ...+..|+.++..+++.+++||+|+|||.+++..+.++ .+
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl 86 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISL 86 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcH
Confidence 457899999999999999999988753332 12211 57889999999999999999999999999999999987 67
Q ss_pred ccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 129 TAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 129 ~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
.+.-.||++|++|+++++.+.+.+.+.+
T Consensus 87 ~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 87 FRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 8999999999999999999999888775
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.44 E-value=2.3e-13 Score=108.08 Aligned_cols=102 Identities=31% Similarity=0.554 Sum_probs=83.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhc---cCCCCC----CC-C--hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHh
Q psy10806 55 LTTVQAFLAEFFSTSLLVFTCCGVW---DSRNAK----FG-D--SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIY 124 (178)
Q Consensus 55 ~s~~~~~~~E~~~Tf~l~~~i~~~~---~~~~~~----~~-~--~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~ 124 (178)
.+.+|.++.|+++|+++++..+++. +..... .. + ..++..|+.+...++..+++||+|+|||.+++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 4689999999999999999987742 111111 01 1 456677999999999999999999999999999999
Q ss_pred cc-ccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 125 SN-VWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 125 ~~-~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
++ +|.+..+|+++|++|+++|+.+.+.++++.
T Consensus 85 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 85 GRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred eeecccceeeEEeeccccccccccchhhcccCc
Confidence 77 789999999999999999999988888764
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=83.09 E-value=18 Score=29.58 Aligned_cols=153 Identities=14% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHccccc-ccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhc
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEI-LFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVW 79 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~ 79 (178)
+++|+|++--++-=.+|=++|++++-+++.-.. +....++..........-.-+.+..+.|+--.++-++..+.++..-
T Consensus 101 ~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~ 180 (265)
T COG2116 101 KISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSY 180 (265)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888888888888777652111 0000001000000000011133557777777777777777776653
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc--cccc-ceec----chhhhHH-HHHHHHHHHH
Q psy10806 80 DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN--VWTA-HWIY----WVAPILG-SIVSTLLYKY 151 (178)
Q Consensus 80 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~--~~~~-~wvy----~v~p~~G-a~~a~~~~~~ 151 (178)
.-|... -.-+. .......++...+.-...|-..-.-.+...+ +|.. .|-- .+|.++| +++.++.|.+
T Consensus 181 ~~k~~~---~K~~~--m~~pv~~Fv~~GfeH~VANm~~i~~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~ 255 (265)
T COG2116 181 SAKDGA---AKIFA--IILPVMLFVASGFEHSVANMFMIPWAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWY 255 (265)
T ss_pred cccchh---hHHHH--HHHHHHHHHHcCCceeeehHHHHHHHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHH
Confidence 222111 22233 3333333444555555667443221222222 4544 2211 2455554 4556777877
Q ss_pred HhccCCC
Q psy10806 152 VFSKDHD 158 (178)
Q Consensus 152 ~~~~~~~ 158 (178)
+++++.+
T Consensus 256 ~~~~~~~ 262 (265)
T COG2116 256 LYRKQNR 262 (265)
T ss_pred hcccccc
Confidence 7766543
No 32
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=75.58 E-value=68 Score=29.94 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy10806 4 MVELVLYVCSQVLGCLIGVGLVNIITPE 31 (178)
Q Consensus 4 ~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~ 31 (178)
..|....+++.++|+++|.++...+.|.
T Consensus 395 ~sRa~~RiiGTliGallA~ll~v~l~P~ 422 (683)
T PRK11427 395 YQKMVLRFGGAFCGAILALLFTLLVMPW 422 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577778888999999888888877753
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=74.40 E-value=7.6 Score=31.80 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccc--cccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhh
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEE--ILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGV 78 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~ 78 (178)
|.+|++.+--+.-=++|=++|+++.-.++... .... ........... . ..+.+.++.|+-=++|-++..+.++..
T Consensus 95 ~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~-~~~~~~~~ia~-~-K~~~~~~~~f~~gI~CNwLVclavw~~ 171 (268)
T PRK11562 95 TISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLP-VDTSIVHSVAL-A-KTTAPAMVLFFKGALCNWLVCLAIWMA 171 (268)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-chhHHHHHHHH-H-HhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888777777777777776665543211 1100 00000000000 0 113467778877777888777777665
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhcc-----ccc----cceecchhhhHHH-HHHHHH
Q psy10806 79 WDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN-----VWT----AHWIYWVAPILGS-IVSTLL 148 (178)
Q Consensus 79 ~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-----~~~----~~wvy~v~p~~Ga-~~a~~~ 148 (178)
...+. . ..-+.+-+.+++... ..+.-...|=- -+...++.+ .|. ..-.=.+|.++|+ ++.++.
T Consensus 172 ~~~~~--~--gKi~~i~~pI~~Fv~--~GFEH~IANm~-~~~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~ 244 (268)
T PRK11562 172 IRTEG--A--AKFIAIWWCLLAFIA--SGYEHSVANMT-LFALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLG 244 (268)
T ss_pred Hhccc--c--chhHHHHHHHHHHHH--cCCcchhHhHH-HHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 1 122233333333222 33333344522 222222221 111 1122346888888 566777
Q ss_pred HHHHhccCCCCCC
Q psy10806 149 YKYVFSKDHDGKN 161 (178)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (178)
|.+.++++.++.+
T Consensus 245 y~~~~~~~~~~~~ 257 (268)
T PRK11562 245 YWYATPKANRPVA 257 (268)
T ss_pred HHHHhCCCcCchh
Confidence 7777766554433
No 34
>KOG3030|consensus
Probab=71.86 E-value=15 Score=30.90 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=34.6
Q ss_pred CCCCChhhcHHHHHhc--------ccccccee-cchhhhHHHHHHHHHHHHHhccCC
Q psy10806 110 GASMNPARSLAPAIYS--------NVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 110 G~~lNPAr~lg~~l~~--------~~~~~~wv-y~v~p~~Ga~~a~~~~~~~~~~~~ 157 (178)
+-.+.|-..|++.... .++++||. -++|-++|+.+|.+.++.+.....
T Consensus 210 ~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~f~ 266 (317)
T KOG3030|consen 210 GRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPNFK 266 (317)
T ss_pred chhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 4556888888777753 25667776 457888999999999988776544
No 35
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=69.30 E-value=18 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.5
Q ss_pred cceecchhhhHHHHHHHHHHHHHhc
Q psy10806 130 AHWIYWVAPILGSIVSTLLYKYVFS 154 (178)
Q Consensus 130 ~~wvy~v~p~~Ga~~a~~~~~~~~~ 154 (178)
+.|.|+++=.+|.++++++..++-+
T Consensus 312 ~~l~~iiailig~vvtavl~~~~k~ 336 (359)
T PRK10478 312 GKLGYIAAVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3577899999999999888765543
No 36
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=64.70 E-value=73 Score=26.91 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=20.5
Q ss_pred cchhhhHHHHHHHHHHHHHhccCCC
Q psy10806 134 YWVAPILGSIVSTLLYKYVFSKDHD 158 (178)
Q Consensus 134 y~v~p~~Ga~~a~~~~~~~~~~~~~ 158 (178)
+++.|++|..++.++|+.+.+...+
T Consensus 139 wvlsPii~~~ia~~l~~~~~~~~~~ 163 (326)
T COG0306 139 WVLSPILGGVLAYLLYSLLRRLIVG 163 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999987765544
No 37
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=59.50 E-value=1e+02 Score=25.64 Aligned_cols=45 Identities=27% Similarity=0.598 Sum_probs=26.1
Q ss_pred CCCCCCh---hhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhcc
Q psy10806 109 TGASMNP---ARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 109 tG~~lNP---Ar~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
.+-++|| +|++..+++.+.| .|++|+|-..=+++.-.+..+-..+
T Consensus 223 ~l~~~G~~a~~~a~~~al~gg~~--a~~fwiGV~giGliiplll~~~~~~ 270 (305)
T COG3301 223 VLLSLGGVAAARALATALAGGFW--AWVFWIGVLGLGLIIPLLLKFGVNP 270 (305)
T ss_pred HHHHhCcHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344555 5788888888777 6667765443334444444443333
No 38
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=58.77 E-value=1.4e+02 Score=27.00 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy10806 3 TMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSR 82 (178)
Q Consensus 3 ~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~ 82 (178)
|......++.+.++|+.+|.+..+.++|... + ...++. +++-+++.. .+....+
T Consensus 385 P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~----------------------~-f~~L~l-~l~~~l~~~-~~~~~~p- 438 (650)
T PF04632_consen 385 PAPALRLFLIGALLGAVLAFLYLFFVLPHLD----------------------G-FPLLAL-VLAPFLFLG-GLLMARP- 438 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----------------------c-HHHHHH-HHHHHHHHH-HHHHcCc-
Confidence 4566777888899999999888888887521 1 111111 111111111 1112121
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHHHHHHHHHHhccC
Q psy10806 83 NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156 (178)
Q Consensus 83 ~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~ 156 (178)
......+++.+....... +......|++.-+-. .++-++|.+++.++++++.+..
T Consensus 439 -----~~~~~g~~~~v~f~~~~~-~~n~~~~d~~~f~n~-------------~la~l~G~~~a~l~~~li~p~~ 493 (650)
T PF04632_consen 439 -----RTAYIGLGFAVFFLLLLG-PGNPYSYDFATFLNR-------------ALAILLGIVIAALVFRLIRPFS 493 (650)
T ss_pred -----hHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCC
Confidence 244455555555444432 333455665543322 4677999999999998876543
No 39
>PRK14217 camphor resistance protein CrcB; Provisional
Probab=56.41 E-value=75 Score=23.11 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- ...+ ......-++..++.-++++|++-+..-.... +.... ..+.
T Consensus 9 V~iGG~lGa~~Ry~l~-~~~~---------------~~~~~~fP~gTl~VNi~GsfllG~~~~~~~~-~~~~~---~~~~ 68 (134)
T PRK14217 9 VAIGGSLGAMSRYLVT-IMAQ---------------NAWGIKFPYGTLLVNTLGSFLAGFFLIVLVG-RFSAE---ESFR 68 (134)
T ss_pred HHHHHHHHHHHHHHHH-HHHH---------------hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HHHH
Confidence 4588999998655543 2111 0000113467889999999999877644322 11111 1122
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHH----hccccccceecchhhhHHHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAI----YSNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l----~~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
..+.+ -..|.+|=-+ +|+... -.++|.....|++..++++++++++=..
T Consensus 69 ~~l~t----GflGgfTTFS-----Tf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 121 (134)
T PRK14217 69 LFLFT----GFLGAFTTFS-----SFAAESLFMFEQGYWFKLITNILVNNVGSLSMVFIGTL 121 (134)
T ss_pred HHHHH----HHhchhccHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 1223333100 222222 1356777778999999999998776443
No 40
>PRK14222 camphor resistance protein CrcB; Provisional
Probab=50.49 E-value=90 Score=22.25 Aligned_cols=109 Identities=10% Similarity=0.003 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- ...+. ..+ ..-++..+..-++++|++-+..-.... +... ...+.
T Consensus 7 V~lGg~~Ga~~Ry~l~-~~~~~-------------~~~--~~fP~gTl~vN~~GsfllG~~~~~~~~-~~~~---~~~~~ 66 (124)
T PRK14222 7 IALFGALGCLARYYLS-GWVYA-------------LFG--RAFPYGTLAVNVIGAFLIGLIMEFSLR-STLI---PPTLR 66 (124)
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-------------hcC--CCCcHHHHHHHHHHHHHHHHHHHHHHh-cCCC---CHHHH
Confidence 3588999988665543 21110 001 112456788999999998766533321 1111 11222
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
..+.+ -..|..|=- -++..... .++|.....|++..++++++++.+=..
T Consensus 67 ~~l~t----Gf~GgfTTF-----STf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 119 (124)
T PRK14222 67 IGLTI----GFLGGLTTF-----STFSYETFRLLEDGELLIASVNVLASVVVCLVCTWLGIM 119 (124)
T ss_pred HHHHH----HHcccchhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 123444310 02222222 346767778999999999998876443
No 41
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=49.32 E-value=1.6e+02 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHHHhccCC
Q psy10806 135 WVAPILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 135 ~v~p~~Ga~~a~~~~~~~~~~~~ 157 (178)
++.|++|.+++..+|+.+.+...
T Consensus 127 v~sPlia~~~a~~l~~~~~~~~~ 149 (326)
T PF01384_consen 127 VISPLIAFILAYILYRLIRRIFL 149 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999987665443
No 42
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=48.37 E-value=1e+02 Score=22.27 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHHH
Q psy10806 15 VLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKF 94 (178)
Q Consensus 15 ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~i 94 (178)
.+|+.+|+.+=|.+- ..... ..+ ..-++..+..-++++|++-+..-.... +...+ ..+..
T Consensus 7 ~lGg~lGa~~Ry~l~-~~~~~-------------~~~--~~fP~gTl~vNi~GsfllG~~~~~~~~-~~~~~---~~~~~ 66 (132)
T PRK14219 7 GIAGILGALSRYYLG-LTIHE-------------FWH--HTFPLATLLINLAGCFLLAWLTTYIAK-LNILP---SDVIT 66 (132)
T ss_pred HHHHHHHHHHHHHHH-HHHHh-------------ccC--CCCcHHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HHHHH
Confidence 488899988766552 11110 001 113456888999999998877644321 11111 12222
Q ss_pred HHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHH
Q psy10806 95 ALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 95 gl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
.+.+ -..|.+|= --+|..... .++|...-.|.+..++++++++.+=..
T Consensus 67 ~l~t----Gf~GgfTT-----FSTf~~E~~~l~~~~~~~~a~~y~~~sl~~gl~a~~lG~~ 118 (132)
T PRK14219 67 GIGT----GFIGSFTT-----FSTFSVETIQLINHSEWSIAFLYVSCSILGGLIMSGLGYT 118 (132)
T ss_pred HHHH----HHccchhh-----HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11233330 002222222 346667778999999999988776543
No 43
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=44.72 E-value=1.2e+02 Score=21.91 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHH
Q psy10806 13 SQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAI 92 (178)
Q Consensus 13 aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~ 92 (178)
.=.+|+.+|+.+=|.+- .... + .+ -++..++.-++++|++-+..-...+ +... ...+
T Consensus 5 ~V~lGG~~Ga~~Ry~l~-~~~~----------------~-~~-fP~gTl~vNi~GsfllG~l~~~~~~-~~~~---~~~~ 61 (129)
T PRK14231 5 YVGVFGALGGMCRYAMN-LWLG----------------G-GD-FPSATLAVNLIGCFLLAFLMQFLAE-KSRI---SLVI 61 (129)
T ss_pred HHHHhHHHHHHHHHHHH-HHhc----------------C-CC-CcHHHHHHHHHHHHHHHHHHHHHHh-ccCC---CHHH
Confidence 34589999998766552 1111 0 11 2467899999999999887544322 1111 1122
Q ss_pred HHHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHHH
Q psy10806 93 KFALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKYV 152 (178)
Q Consensus 93 ~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~~ 152 (178)
..++.+. ..|.+|=- -+|+.-.. .++|.....|++..++++++++++=..+
T Consensus 62 ~~~l~tG----flGgfTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 116 (129)
T PRK14231 62 LNGIGTG----FIGAFTTF-----SAFSVDTIQLVQSGAWLLAVSYVLASFIGGLIMVKFGRML 116 (129)
T ss_pred HHHHHhH----HhcccccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 22333310 02222222 3466677789999999999888765443
No 44
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=42.02 E-value=8.5 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=0.0
Q ss_pred cceecchhhhHHHHHHHHHHHHHhccCCCCC
Q psy10806 130 AHWIYWVAPILGSIVSTLLYKYVFSKDHDGK 160 (178)
Q Consensus 130 ~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~ 160 (178)
.-|+-|++|++.-++++++.....++...+.
T Consensus 100 ~~~~lW~~P~~~l~~g~~~~~~~~rr~~~~~ 130 (148)
T PF03918_consen 100 FTWLLWLGPFLLLLLGGALLFRRLRRWRRRA 130 (148)
T ss_dssp -------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4688899999999999888776666554433
No 45
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.33 E-value=19 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHhccCC
Q psy10806 138 PILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 138 p~~Ga~~a~~~~~~~~~~~~ 157 (178)
-+.|-+...++..|++++..
T Consensus 73 v~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444443
No 46
>PRK14195 camphor resistance protein CrcB; Provisional
Probab=40.31 E-value=1.4e+02 Score=21.38 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHH
Q psy10806 13 SQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAI 92 (178)
Q Consensus 13 aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~ 92 (178)
.=.+|+.+|+.+=|.+- ...+. ..+ ..-++..+..-++++|++-+..-.... +... ...+
T Consensus 6 ~V~~Gg~~Ga~~Ry~l~-~~~~~-------------~~~--~~fP~gTl~vNi~GsfllG~~~~~~~~-~~~~---~~~~ 65 (125)
T PRK14195 6 LVAAGGALGSVARYLVG-VGALR-------------LMG--PAFPWGTLAVNVTGSFLIGVLAGLLAH-RWNA---SQEW 65 (125)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHh-------------ccC--CCCchHHHHHHHHHHHHHHHHHHHHHh-ccCC---CHHH
Confidence 44588999988655542 21110 000 112456788999999998777544321 1111 1122
Q ss_pred HHHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHH
Q psy10806 93 KFALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYK 150 (178)
Q Consensus 93 ~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~ 150 (178)
...+ ..-..|..|=- -++..... .++|.....|.+..++++++++.+=.
T Consensus 66 ~~~l----~tGf~GgfTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~ 118 (125)
T PRK14195 66 RLFL----IVGVLGGFTTF-----SAFSLDAALLIERGAYGAAAAYIAASVVLSVAALFAGL 118 (125)
T ss_pred HHHH----HhHhccCcccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 11223444411 12222222 24676777899999999999887644
No 47
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=38.93 E-value=2e+02 Score=22.91 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCC-C--CCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHh
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSS-A--GLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCG 77 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~ 77 (178)
|.+|.+.+--+.-=++|=++|+.++-.++.........+ + +....... -..+.+.++.|+-=+++.++..+.++.
T Consensus 80 ~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~--~K~~~~~~~~f~~gilcn~lV~lav~~ 157 (239)
T TIGR00790 80 KISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAE--HKAHHTFVEAFFLGILCNWLVCLAVWM 157 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777767777777666555432110000000 0 00000000 111346778888888888888887765
Q ss_pred h
Q psy10806 78 V 78 (178)
Q Consensus 78 ~ 78 (178)
.
T Consensus 158 ~ 158 (239)
T TIGR00790 158 S 158 (239)
T ss_pred H
Confidence 4
No 48
>PRK09713 focB putative formate transporter; Provisional
Probab=37.41 E-value=2.4e+02 Score=23.30 Aligned_cols=26 Identities=4% Similarity=0.033 Sum_probs=20.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhc
Q psy10806 54 SLTTVQAFLAEFFSTSLLVFTCCGVW 79 (178)
Q Consensus 54 ~~s~~~~~~~E~~~Tf~l~~~i~~~~ 79 (178)
+.+.++.|+--++|-++..+.++...
T Consensus 157 ~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 157 HHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888888888888887654
No 49
>PRK14227 camphor resistance protein CrcB; Provisional
Probab=36.81 E-value=1.6e+02 Score=21.06 Aligned_cols=110 Identities=12% Similarity=-0.027 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHH
Q psy10806 13 SQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAI 92 (178)
Q Consensus 13 aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~ 92 (178)
+=.+|+.+|+.+=|.+- ...+ ...+..-++..++.-++++|++-+..-... ++...+ ..+
T Consensus 6 ~V~~Gg~~Ga~~Ry~l~-~~~~---------------~~~~~~fP~gTl~vN~~GsfllG~~~~~~~-~~~~~~---~~~ 65 (124)
T PRK14227 6 VVAIGGSIGAILRYFTG-VYSA---------------KNLGLDFPYGTLIVNSVGSFILSFFMILFL-EKLSLD---PLW 65 (124)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH---------------hhCcCCCcHHHHHHHHHHHHHHHHHHHHHH-hccCCC---HHH
Confidence 34588999988655542 2111 000011245778999999999977654332 111111 112
Q ss_pred HHHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHH
Q psy10806 93 KFALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 93 ~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
...+. .-..|..|=- -+|+.... +++|.....|++..++++++++.+=..
T Consensus 66 ~l~l~----tGf~GgfTTF-----STf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~~~~lG~~ 119 (124)
T PRK14227 66 RLFVA----VGFCGSFTTF-----SSFTYETIALFQDGDYTKAMLNIILNNVLSITSAFSGIV 119 (124)
T ss_pred HHHHH----hhHhcccccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1123444310 02222222 346777778999999999999877543
No 50
>PRK14198 camphor resistance protein CrcB; Provisional
Probab=36.14 E-value=1.6e+02 Score=21.01 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- .... .... ..-++..++.-++++|++-+..-.... +...+ ..+.
T Consensus 6 V~~GG~lGa~~Ry~l~-~~~~--------------~~~~-~~fP~~Tl~vN~~GsfllG~l~~~~~~-~~~~~---~~~~ 65 (124)
T PRK14198 6 VFVGGGLGASLRHAVN-MASA--------------RLLG-TSFPYGTFIINVSGSLVMGLIAGYLAF-KGGAP---QHWR 65 (124)
T ss_pred HHHHHHHHHHHHHHHH-HHHH--------------HhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HHHH
Confidence 4589999998766552 1111 0000 112467889999999999877644322 11111 1222
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYK 150 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~ 150 (178)
..+.+ -..|..|=-+ +++.... .++|.....|++..++++++++++=.
T Consensus 66 ~~l~t----GflGgfTTFS-----Tf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~ 117 (124)
T PRK14198 66 LFLMT----GILGGYTTFS-----AFSLDAALLYERGALGLAALYVLGSVALGIAGLFAGL 117 (124)
T ss_pred HHHHH----HHhcccccHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1234443100 2222222 34677778899999999999887644
No 51
>KOG1330|consensus
Probab=35.54 E-value=43 Score=29.84 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=24.5
Q ss_pred cceecchhhhHHHHHHHHHHHHHhccCCC
Q psy10806 130 AHWIYWVAPILGSIVSTLLYKYVFSKDHD 158 (178)
Q Consensus 130 ~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~ 158 (178)
+.|-|++.+.+|.+++.+++-+...|+.+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 78999999999999999998776666654
No 52
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=34.23 E-value=37 Score=25.37 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q psy10806 56 TTVQAFLAEFFSTSLLVFT 74 (178)
Q Consensus 56 s~~~~~~~E~~~Tf~l~~~ 74 (178)
+.+-+.+.|.++|.++--.
T Consensus 88 k~~~a~lGEviGTGiIGal 106 (150)
T PF09512_consen 88 KLWAAALGEVIGTGIIGAL 106 (150)
T ss_pred cchHHHHHHHHhhHHHHHH
Confidence 5678899999999876544
No 53
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=34.20 E-value=1.8e+02 Score=20.94 Aligned_cols=110 Identities=8% Similarity=-0.024 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- ...+ ......-++..++.-.+++|++-+..-.... +.... ..+.
T Consensus 10 V~~GG~lGa~~Ry~l~-~~~~---------------~~~~~~fP~gTl~VN~~GsfllG~~~~~~~~-~~~~~---~~~~ 69 (127)
T PRK14200 10 IALGGAFGACSRYLVS-ELCV---------------VLLGRGFPYGTLTVNVVGSFIMGLLIAAFEN-ELLAT---EPWR 69 (127)
T ss_pred HHHHHHHHHHHHHHHH-HHHH---------------hhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HHHH
Confidence 4588899988655542 2111 0000112457788999999999877644322 11111 1122
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKYV 152 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~~ 152 (178)
..+. .-..|..|=- -+|+.... .++|.....|++..++++++++++=..+
T Consensus 70 ~~l~----tGf~GgfTTF-----STf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 123 (127)
T PRK14200 70 QIIG----LGFLGALTTF-----STFSMDNVLLMQQGAFFKMGLNVLLNVVLSISAAWIGFQL 123 (127)
T ss_pred HHHH----HHHhccchhH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1223444310 02222222 3467677789999999999998775443
No 54
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=33.30 E-value=1.1e+02 Score=18.38 Aligned_cols=19 Identities=0% Similarity=-0.055 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhccCCC
Q psy10806 140 LGSIVSTLLYKYVFSKDHD 158 (178)
Q Consensus 140 ~Ga~~a~~~~~~~~~~~~~ 158 (178)
+-++++.++....-+...+
T Consensus 12 v~~lLg~~I~~~~K~ygYk 30 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYGYK 30 (50)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 4455555555544444433
No 55
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=33.30 E-value=47 Score=23.14 Aligned_cols=46 Identities=15% Similarity=0.424 Sum_probs=38.9
Q ss_pred CCCCChhhcHHHHHhccccc---cceecchhhhHHHHHHHHHHHHHhcc
Q psy10806 110 GASMNPARSLAPAIYSNVWT---AHWIYWVAPILGSIVSTLLYKYVFSK 155 (178)
Q Consensus 110 G~~lNPAr~lg~~l~~~~~~---~~wvy~v~p~~Ga~~a~~~~~~~~~~ 155 (178)
|+.+.|-|.+-.-++.++.+ ...+|+++-++|+=.+..+.+++.+.
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 46799999999999888654 56789999999999999999887654
No 56
>PRK10805 formate transporter; Provisional
Probab=31.17 E-value=3e+02 Score=22.68 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHccc-ccccccCCCC--CccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHh
Q psy10806 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPE-EILFPVSSAG--LSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCG 77 (178)
Q Consensus 1 ~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~ 77 (178)
|++|++.+-.|.-=++|=++|++++-.++.. .......+.. ........ ..+.+.++.|+-=++|-++..+.++.
T Consensus 104 ~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~~~~~~a~~--K~~~~~~~~f~~gI~CN~lVclaV~~ 181 (285)
T PRK10805 104 RITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADH--KVHHTFIEAVCLGILANLMVCLAVWM 181 (285)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888866666666666666654443211 1100000000 00000000 11346778888888888888888775
Q ss_pred hc
Q psy10806 78 VW 79 (178)
Q Consensus 78 ~~ 79 (178)
..
T Consensus 182 ~~ 183 (285)
T PRK10805 182 SY 183 (285)
T ss_pred HH
Confidence 53
No 57
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=30.40 E-value=2.1e+02 Score=20.70 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHHH
Q psy10806 15 VLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKF 94 (178)
Q Consensus 15 ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~i 94 (178)
.+|+.+|+.+=|.+-. .... ..+ ..-++..++.-++++|++-+..-... ++... ..++..
T Consensus 14 ~~GG~~Ga~lRy~l~~-~~~~-------------~~~--~~fP~gTl~VNv~GsfllG~l~~~~~-~~~~~---~~~~~~ 73 (133)
T PRK14218 14 MLGGAFGSGLRFVIGS-CLLQ-------------RFG--AGFPWGTLAVNLIGSFVAGFLLIWLD-KRGSA---GWPWRM 73 (133)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-------------hcC--CCCcHHHHHHHHHHHHHHHHHHHHHH-hccCC---CHHHHH
Confidence 4899999887665531 1110 000 11356789999999999977764332 22111 112222
Q ss_pred HHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHH
Q psy10806 95 ALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 95 gl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
.+.+ -..|.+|= --+|+.... .++|...-.|++..++++++++.+=..
T Consensus 74 ~l~t----GflGgfTT-----FSTf~~E~~~L~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 125 (133)
T PRK14218 74 LLIV----GLIGGLTT-----FSSLMMECLVFVRSDRSLMVGIYLCITLLFGLLFVFLGAR 125 (133)
T ss_pred HHHH----HHhchhcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 12233331 002222222 346666678999999999998877543
No 58
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=30.27 E-value=1.2e+02 Score=17.97 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q psy10806 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEIL 34 (178)
Q Consensus 2 ~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~ 34 (178)
.+|++-+....+-++--++|+-++..+|.+++.
T Consensus 5 v~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 5 VSWPSYLKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 578888999999999999999999999988764
No 59
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=29.75 E-value=37 Score=21.25 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHhccccccceecchhhhHHHHH
Q psy10806 89 SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIV 144 (178)
Q Consensus 89 ~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~ 144 (178)
...+.+|+......+..+.+.|.+=+=.+.+.+ ...++++-+.+.+|=++|+.+
T Consensus 7 ~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~--~~~~~~W~~~fl~Gl~~g~~l 60 (62)
T PF14241_consen 7 IGGLLIGLAASLLLLLNGRIAGISGILSGLLSP--NKPDRDWRLAFLAGLILGGFL 60 (62)
T ss_pred HHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC--CCCCccHHHHHHHHHHHHHHH
Confidence 456778888888888888888877333333322 111233345555555555544
No 60
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=29.63 E-value=2.1e+02 Score=20.42 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- .... ......-++..+..-++++|++-+..-.....+.... ..++.
T Consensus 6 V~~Gg~lGa~~Ry~l~-~~~~---------------~~~~~~fp~gTl~vNi~GsfllG~~~~~~~~~~~~~~--~~~~~ 67 (127)
T PRK14206 6 IALGSALGGTLRFWLS-GLVA---------------EATGGTFPWGTLVINVSGSFLIGFFATLTGPEGRVFV--GESWR 67 (127)
T ss_pred HHHhHHHHHHHHHHHH-HHHh---------------hcccCCCchHHHHHHHHHHHHHHHHHHHHhhcccccC--CHHHH
Confidence 3588999988665542 1111 0000112456788999999999887644321111111 11222
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHH----hccccccceecchhhhHHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAI----YSNVWTAHWIYWVAPILGSIVSTLLYK 150 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l----~~~~~~~~wvy~v~p~~Ga~~a~~~~~ 150 (178)
..+. .-..|..|=-+ +|.... -.++|.....|++..++++++++++=.
T Consensus 68 ~~l~----tGf~GgfTTFS-----Tf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~~G~ 119 (127)
T PRK14206 68 LFVM----VGVCGGFTTFS-----SFSLQTLNLARDGDWLRAGGNVVLSVVFCLLAVWLGH 119 (127)
T ss_pred HHHH----HHHccccccHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12234444111 222222 235676777899999999999887643
No 61
>PRK14215 camphor resistance protein CrcB; Provisional
Probab=29.33 E-value=2.2e+02 Score=20.40 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhH
Q psy10806 12 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVA 91 (178)
Q Consensus 12 ~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~ 91 (178)
++=.+|+.+|+.+=|.+- ...+ ......-++..++.-++++|++-+..-.... +...++ .
T Consensus 5 l~V~~Gg~~Ga~~Ry~l~-~~~~---------------~~~~~~fP~gTl~vN~~GsfllG~~~~~~~~-~~~~~~---~ 64 (126)
T PRK14215 5 LAIAVGAAIGANLRYGIG-LWAA---------------QRWGTSWPYGTFIINLLGCLLIGLLLTLATT-RLTLSE---P 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhh---------------hcccCCCchHHHHHHHHHHHHHHHHHHHHHh-ccCCCH---H
Confidence 345689999998766543 1111 0000012456788999999999887644322 111111 1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHHHH
Q psy10806 92 IKFALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYKYV 152 (178)
Q Consensus 92 ~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~~~ 152 (178)
+...+ ..-..|.+|=- -+|+.... .++|.....|.+..++++++++++=..+
T Consensus 65 ~~~~l----~tGf~GgfTTF-----STf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 120 (126)
T PRK14215 65 ARLML----VTGLLGGFTTF-----STFGYESYSLLSSGNWLAAGGYVVGSVGGGLIAVIIGAGL 120 (126)
T ss_pred HHHHH----HhHHhcccccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 11223444411 12222222 2466677789999999999988775443
No 62
>PRK09979 putative rho operon leader peptide; Provisional
Probab=29.26 E-value=19 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.6
Q ss_pred cCCCCCCChhhcHHHHH
Q psy10806 107 PYTGASMNPARSLAPAI 123 (178)
Q Consensus 107 ~~tG~~lNPAr~lg~~l 123 (178)
.++|.++||.--|+.+.
T Consensus 5 qisgsslnpscrfssay 21 (33)
T PRK09979 5 QISGSSLNPSCRFSSAY 21 (33)
T ss_pred cccCCcCCccccccccc
Confidence 57899999987665543
No 63
>PRK14203 camphor resistance protein CrcB; Provisional
Probab=28.97 E-value=2.2e+02 Score=20.49 Aligned_cols=113 Identities=7% Similarity=-0.093 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhH
Q psy10806 12 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVA 91 (178)
Q Consensus 12 ~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~ 91 (178)
+.=.+|+.+|+.+=|.+- .... ......-++..++.-++++|++-+..-...+.+.... ..+
T Consensus 9 l~V~~GG~~GA~~Ry~l~-~~~~---------------~~~~~~fP~~Tl~VNi~GsfllG~l~~~~~~~~~~~~--~~~ 70 (132)
T PRK14203 9 IWVALGSVLGGPARFFLS-GLVA---------------RRIGETFPWGTLTVNVSGAFAIGIFGALAASGHGLFA--LPA 70 (132)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHh---------------hcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC--ChH
Confidence 345688999988765542 2111 0000113457788999999999877644322111000 011
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChhhcHHHHH----hccccccceecchhhhHHHHHHHHHHHH
Q psy10806 92 IKFALVIALCSITVGPYTGASMNPARSLAPAI----YSNVWTAHWIYWVAPILGSIVSTLLYKY 151 (178)
Q Consensus 92 ~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l----~~~~~~~~wvy~v~p~~Ga~~a~~~~~~ 151 (178)
....+ ..-..|.+|=- -+|+... -.++|.....|++..++++++++++=..
T Consensus 71 ~~l~l----~tGflGgfTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 125 (132)
T PRK14203 71 PWLFA----VTGFLGCYTTV-----SSFSLQTLTLARDGEFLRALGNVAFSLILCLIAVAIGFA 125 (132)
T ss_pred HHHHH----HHHHhchhccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11123333310 0222222 2356777778999999999999877543
No 64
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=28.77 E-value=94 Score=18.20 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHhccCC
Q psy10806 139 ILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 139 ~~Ga~~a~~~~~~~~~~~~ 157 (178)
+.+++++++++....+|..
T Consensus 20 ~~~~~~~~~~Hyi~vGPn~ 38 (44)
T PF09163_consen 20 MGATAAAGFFHYITVGPNR 38 (44)
T ss_dssp HHHHHHHHHHHHHHH--B-
T ss_pred HHHHHHHHHHHHhhcCCCC
Confidence 4444455555544455543
No 65
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=28.64 E-value=2.2e+02 Score=20.35 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhH
Q psy10806 12 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVA 91 (178)
Q Consensus 12 ~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~ 91 (178)
+.=.+|+.+|+.+=|.+- ..... ..+ ..-++..++.-++++|++-+..-.... +...+ ..
T Consensus 5 l~V~~GG~~Ga~~Ry~l~-~~~~~-------------~~~--~~fP~~Tl~vNi~GsfllG~~~~~~~~-~~~~~---~~ 64 (126)
T PRK14208 5 LLVCLGGALGSGARYLTS-AWALR-------------AFG--PDFPRGTLLVNVSGSFLLAGIMTASLQ-SEAVP---PD 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-------------hcC--CCCcHHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HH
Confidence 344589999998766552 21110 001 113467889999999999877644322 11111 11
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChhhcHHHHH----hccccccceecchhhhHHHHHHHHHHH
Q psy10806 92 IKFALVIALCSITVGPYTGASMNPARSLAPAI----YSNVWTAHWIYWVAPILGSIVSTLLYK 150 (178)
Q Consensus 92 ~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l----~~~~~~~~wvy~v~p~~Ga~~a~~~~~ 150 (178)
+...+.+. ..|.+|=- -+++... -.++|...-.|.+..++++++++.+=.
T Consensus 65 ~~~~l~tG----flGgfTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~ 118 (126)
T PRK14208 65 LRLFLAAG----VMGGFTTY-----SSFNYETLALLEQGRLAAAAAYLLATVLGCLAAAFAAT 118 (126)
T ss_pred HHHHHHHH----HhcchhhH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 12333310 0222222 235676777899999999999887644
No 66
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=28.01 E-value=2.7e+02 Score=23.64 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=12.8
Q ss_pred ccccceecchhhhH-HHHHHHHHHHHHhccCC
Q psy10806 127 VWTAHWIYWVAPIL-GSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 127 ~~~~~wvy~v~p~~-Ga~~a~~~~~~~~~~~~ 157 (178)
++.+++.+-.-+.+ +-++..++.+++++++.
T Consensus 169 ~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~ 200 (416)
T cd01118 169 GFTEYAALMFLPSIVSILATYVVLYLFFRRAL 200 (416)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444443333 33333333344555544
No 67
>PLN02250 lipid phosphate phosphatase
Probab=27.92 E-value=2.6e+02 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=18.3
Q ss_pred chhhhHHHHHHHHHHHHHhccCC
Q psy10806 135 WVAPILGSIVSTLLYKYVFSKDH 157 (178)
Q Consensus 135 ~v~p~~Ga~~a~~~~~~~~~~~~ 157 (178)
++|-++|.++|.+.|+..+++..
T Consensus 227 laG~lIG~~~A~~~y~~~fp~~~ 249 (314)
T PLN02250 227 FAGALIGLTVASFCYLQFFPPPY 249 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcc
Confidence 47888999999999998776543
No 68
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.17 E-value=77 Score=21.69 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=5.9
Q ss_pred hHHHHHHHHHH
Q psy10806 139 ILGSIVSTLLY 149 (178)
Q Consensus 139 ~~Ga~~a~~~~ 149 (178)
+++-++|+++.
T Consensus 8 lL~l~LA~lLl 18 (95)
T PF07172_consen 8 LLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 69
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=25.26 E-value=2.2e+02 Score=23.39 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhh
Q psy10806 15 VLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGV 78 (178)
Q Consensus 15 ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~ 78 (178)
++||++|++.+-.++.+ ..+........++.+++++++.+.-
T Consensus 37 l~ga~iGa~~~~~~~~p----------------------~~~~~~~~~~k~~~s~lmv~iafg~ 78 (288)
T TIGR02854 37 LLAALIGSLYVLFMFTP----------------------KASFFTSPIAKLLYSFLIIFIAFGP 78 (288)
T ss_pred HHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46888888877666422 2356677778888888888877754
No 70
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.46 E-value=76 Score=17.48 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=17.0
Q ss_pred eecchhhhHHHHHHHHHHHHHh
Q psy10806 132 WIYWVAPILGSIVSTLLYKYVF 153 (178)
Q Consensus 132 wvy~v~p~~Ga~~a~~~~~~~~ 153 (178)
|==..+|.+.+++++++...+-
T Consensus 11 WhDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred HHHhHhHHHHHHHHHHHHHHHH
Confidence 4446789999999998887654
No 71
>PRK14234 camphor resistance protein CrcB; Provisional
Probab=23.96 E-value=2.7e+02 Score=19.78 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChhHHH
Q psy10806 14 QVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIK 93 (178)
Q Consensus 14 Q~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~~~~~~ 93 (178)
=.+|+.+|+.+=|.+- ..... ..+ +.-++..++.-.+++|++-+..-.... +...+ ..+.
T Consensus 8 V~~Gg~~Ga~~Ry~l~-~~~~~-------------~~~--~~fP~~Tl~vNi~G~fllG~~~~~~~~-~~~~~---~~~~ 67 (124)
T PRK14234 8 VSAGGIAGTLLRFATG-NWVSA-------------NWP--RHFYAATLAVNIVGCLLIGLLYGLFLL-RPEVP---IELR 67 (124)
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-------------ccC--CCcchHHHHHHHHHHHHHHHHHHHHHh-ccCCC---HHHH
Confidence 3588888888766553 11110 001 112456788999999998776543321 11111 1222
Q ss_pred HHHHHHHHHHHhccCCCCCCChhhcHHHHHh-------ccccccceecchhhhHHHHHHHHHH
Q psy10806 94 FALVIALCSITVGPYTGASMNPARSLAPAIY-------SNVWTAHWIYWVAPILGSIVSTLLY 149 (178)
Q Consensus 94 igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~-------~~~~~~~wvy~v~p~~Ga~~a~~~~ 149 (178)
..+.+ -..|.+| +|+.... .++|...-.|.+..++++++++++=
T Consensus 68 ~~l~t----Gf~GgfT--------TFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~~G 118 (124)
T PRK14234 68 AGLIV----GFLGGLT--------TFSSFSLDTLRLLESGQVPLALGYAGISVFGGLLATWAG 118 (124)
T ss_pred HHHHH----HHccccc--------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1234444 3333222 3466666779999999999887764
No 72
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=22.69 E-value=3e+02 Score=19.75 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccccCCCCCccceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy10806 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAK 85 (178)
Q Consensus 6 ~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~ 85 (178)
|.+.|+ .=.+|+.+|+.+=|.+-.- .. ......-++..++.-++++|++-+..-.... +...
T Consensus 3 ~~~~~l-~V~~GG~~GA~~Ry~l~~~-~~---------------~~~~~~fP~gTl~VNi~GsfllG~~~~~~~~-~~~~ 64 (128)
T PRK14199 3 KLILAI-IVGLGGFIGASLRYLISIF-AA---------------KMFNGNFPYGTLIVNIVGALLIGFIMEFSMD-TALI 64 (128)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-HH---------------hhccCCCchHHHHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 334443 3568999998887665311 11 0000113456788999999999776433221 1111
Q ss_pred CCChhHHHHHHHHHHHHHHhccCCCCCCChhhcHHHHHh----ccccccceecchhhhHHHHHHHHHHH
Q psy10806 86 FGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIY----SNVWTAHWIYWVAPILGSIVSTLLYK 150 (178)
Q Consensus 86 ~~~~~~~~igl~v~~~~~~~~~~tG~~lNPAr~lg~~l~----~~~~~~~wvy~v~p~~Ga~~a~~~~~ 150 (178)
+ ..+...+.+ -..|..|= --+++.... +++|.+...|++..++++++++++=.
T Consensus 65 ~---~~~~~~l~t----Gf~GgfTT-----FSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~ 121 (128)
T PRK14199 65 S---SNMKLFLTT----GIMGGLTT-----FSTFSYETINLITNGNILLGIENIILNLGLSLLGVVIGQ 121 (128)
T ss_pred C---HHHHHHHHh----HHhccccc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222211 11244441 012222222 34677788899999999998877643
No 73
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=21.97 E-value=5e+02 Score=22.08 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccccccc-CCC-CCc-cceeecCCCCCccHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10806 4 MVELVLYVCSQVLGCLIGVGLVNIITPEEILFPV-SSA-GLS-NGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 80 (178)
Q Consensus 4 ~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~p~~~~s~~~~~~~E~~~Tf~l~~~i~~~~~ 80 (178)
|++-+.-.+.-++|.++...++...+..+..... -.+ ..+ --+|....++-...|.......+..++=+.+...+.|
T Consensus 25 ~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaSPLAQPwsiiGGNlvaAlvgvtva~~vgd 104 (382)
T COG3448 25 LRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSIIGGNLVAALVGVTVAYFVGD 104 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCCccccchhhhcchHHHHHHhhhhhhhhCC
Confidence 4555555666677777777777666655443210 011 111 1123333334456777777777777766666666644
No 74
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=20.65 E-value=58 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred hccCCCCCCChhhcHHHHHhcccc
Q psy10806 105 VGPYTGASMNPARSLAPAIYSNVW 128 (178)
Q Consensus 105 ~~~~tG~~lNPAr~lg~~l~~~~~ 128 (178)
.++-||+|+-||.++...+....|
T Consensus 6 ~~gGTGGHv~pAlAl~~~l~~~g~ 29 (357)
T COG0707 6 TAGGTGGHVFPALALAEELAKRGW 29 (357)
T ss_pred EeCCCccchhHHHHHHHHHHhhCc
Confidence 466799999999999999987766
Done!