RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10806
(178 letters)
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 114 bits (287), Expect = 5e-32
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++ ++ Y+ +Q+LG ++G L+ + L + + + G T P ++ AF
Sbjct: 74 FPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAF 133
Query: 62 LAEFFSTSLLVFTCCGVWD-SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
EF T +LV D G + L++A + GP TGASMNPARSL
Sbjct: 134 FVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLG 193
Query: 121 PAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYV 152
PA+++ W W+YWV P++G+I L+Y YV
Sbjct: 194 PALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228
Score = 50.7 bits (122), Expect = 5e-08
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 59 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDS------VAIKFALVIALCSITVGPYTGAS 112
+ +LAEF T LLVF CG G + +A+ + I + VG +G
Sbjct: 1 RKYLAEFLGTFLLVFFGCGS-VLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGH 59
Query: 113 MNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFS 154
+NPA +LA A+ I Y +A +LG+I+ L ++
Sbjct: 60 INPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYY 102
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein. MIP (Major Intrinsic
Protein) family proteins exhibit essentially two
distinct types of channel properties: (1) specific water
transport by the aquaporins, and (2) small neutral
solutes transport, such as glycerol by the glycerol
facilitators.
Length = 218
Score = 110 bits (277), Expect = 1e-30
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I+++ + Y+ +Q+LG + G L+ +T + AG GF + + QAF
Sbjct: 79 ISLLRAIYYIIAQLLGAICGAALLKGVTN-----GLQRAG---GFANS-LAPGVNAGQAF 129
Query: 62 LAEFFSTSLLVFTCCGVWDS-RNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E T LV+T D RN G + + L + GPYTGASMNPARS
Sbjct: 130 VVEIILTFQLVYTVFATTDDPRNGSLGHVAPLAIGFAVFLNHLAGGPYTGASMNPARSFG 189
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLY 149
PA+ W HW+YWV P++G+ ++ L+Y
Sbjct: 190 PAVVLWKWDDHWVYWVGPLIGAALAALVY 218
Score = 51.1 bits (123), Expect = 2e-08
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFG--DSVAIKFALVIALCSITVGPYTGA 111
S++ +A +AEF +T L VF G +G +VA+ F L + G +GA
Sbjct: 4 SVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYGGLLAVALAFGLALFTLVYCTGHISGA 63
Query: 112 SMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFS 154
+NPA + A + + I Y +A +LG+I L K V +
Sbjct: 64 HLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTN 107
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins. 1.A.8 The Major
Intrinsic Protein (MIP) FamilyThe MIP family is large
and diverse, possessing over 100 members that all form
transmembrane channels. These channel proteins function
in water, smallcarbohydrate (e.g., glycerol), urea, NH3,
CO2 and possibly ion transport by an energy independent
mechanism. They are found ubiquitously in bacteria,
archaeaand eukaryotes. The MIP family contains two major
groups of channels: aquaporins and glycerol
facilitators.The known aquaporins cluster loosely
together as do the known glycerol facilitators. MIP
family proteins are believed to form aqueous pores that
selectively allow passive transport of their solute(s)
across the membrane with minimal apparent recognition.
Aquaporins selectively transport water (but not
glycerol) while glycerol facilitators selectively
transport glycerol but not water. Some aquaporins can
transport NH3 and CO2. Glycerol facilitators function as
solute nonspecific channels, and may transport glycerol,
dihydroxyacetone, propanediol, urea and other small
neutral molecules in physiologically importantprocesses.
Some members of the family, including the yeast FPS
protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport
both water and small solutes [Transport and binding
proteins, Unknown substrate].
Length = 216
Score = 104 bits (261), Expect = 3e-28
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 11/151 (7%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
+ + +Y+ +Q++G ++G L+ +T LFP + A A +++ QAF
Sbjct: 74 FPLKRVPVYIVAQLIGAILGAALLYGLTSG--LFPGNLAV------NGSASAGVSSGQAF 125
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKF-GDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
EF T++LV D RN G + L++ L +++GPYTG MNPARSL
Sbjct: 126 FVEFIGTAILVLVIFATTDDRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLG 185
Query: 121 PAIYSNV--WTAHWIYWVAPILGSIVSTLLY 149
PA+++ + W HW+YWV PI+G+I+ L+Y
Sbjct: 186 PALFAGLAGWGNHWVYWVGPIIGAILGALVY 216
Score = 41.5 bits (98), Expect = 5e-05
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 63 AEFFSTSLLVFTCCGV-----WDSRNAKFGDS----VAIKFALVIALCSITVGPYTGASM 113
AEF T LLVF G G VA+ F L +A VG +GA +
Sbjct: 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHL 60
Query: 114 NPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSK 155
NPA ++A + +Y VA ++G+I+ L + S
Sbjct: 61 NPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSG 103
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases
(Major Intrinsic Protein Family) [Carbohydrate transport
and metabolism].
Length = 241
Score = 94.6 bits (236), Expect = 3e-24
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEF 65
+++ Y+ +QVLG G L+ ++ +IL S G +T P + QAFL EF
Sbjct: 85 KVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGY-SLGQAFLIEF 143
Query: 66 FSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS 125
T +LV + D NA G + L++ +++GP TG ++NPAR L P +
Sbjct: 144 VGTFVLVLGILALTDDGNANAG-FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAH 202
Query: 126 NVW---------TAHWIYWVAPILGSIVSTLLYKYVF 153
++ + WI + PI+G+I+ LLYK +
Sbjct: 203 SLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLL 239
Score = 45.7 bits (109), Expect = 2e-06
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 61 FLAEFFSTSLLVFTCCGV------WDSRNAKFG-DSVAIKFALVIALCSITVGPYTGASM 113
LAEF T LL+F G S+ G +A+ + L + + G +GA +
Sbjct: 8 LLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHL 67
Query: 114 NPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLL 148
NPA ++A A+ W Y VA +LG+ L
Sbjct: 68 NPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAAL 103
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional.
Length = 231
Score = 82.3 bits (204), Expect = 1e-19
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVP-HASLTTVQAFLA 63
ELV Y+ +QV+G + ++ +I + F ++ +G SNG+ P SL A +
Sbjct: 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLA--ALVC 137
Query: 64 EFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALV-IALCSITVGPYTGASMNPARSLAPA 122
E T+ + G D R +AI AL I L SI P T S+NPARS A
Sbjct: 138 EVVLTAFFLLVILGATDKRAPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARSTGVA 194
Query: 123 IYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 156
++ W W++WVAPI+G+I+ L+Y+ + KD
Sbjct: 195 LFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230
Score = 30.7 bits (70), Expect = 0.26
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 61 FLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPYTGASMNP 115
AEFF T LVF CG V + + G VA+ F L + + VG +G NP
Sbjct: 5 LAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNP 64
Query: 116 ARSLAPAIYSNVWTAHWI-YWVAPILGSIV-STLLY 149
A S+ + Y +A ++G I + +LY
Sbjct: 65 AVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLY 100
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 73.0 bits (179), Expect = 7e-16
Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 33 ILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAI 92
+ P S G+ TVP S++T QAF EF T L+F V A G+ I
Sbjct: 170 VFHPFMSGGV------TVP--SVSTGQAFALEFIITFNLLFVVTAVATDTRA-VGELAGI 220
Query: 93 KFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYV 152
+ L + GP TG SMNP R+L PA+ + + A WIY VAP LG++ Y V
Sbjct: 221 AVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAV 280
Query: 153 FSKDHDGKNRPEQLS 167
++ DG S
Sbjct: 281 KLREEDGDPPRPVRS 295
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
Length = 296
Score = 70.4 bits (172), Expect = 7e-15
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 10 YVCSQVLGCLIGVGLVNIITPEEILFPVSS---AGLSNGFCTTVPHASLTTVQAFLAEFF 66
YV SQV+G + + +LF + +G + F + P S +QAF+ EF
Sbjct: 135 YVISQVIGSTLAAATL------RLLFGLDHDVCSGKHDVFIGSSPVGS--DLQAFVMEFI 186
Query: 67 STSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSN 126
T L+F GV + N G+ + + L + P + ASMNP RSL PA+
Sbjct: 187 VTFYLMFIISGV-ATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG 245
Query: 127 VWTAHWIYWVAPILGSIVSTLLYKYVFSKD 156
+ WIY VAP LG+I +Y V D
Sbjct: 246 CYKGIWIYIVAPTLGAIAGAWVYNTVRYTD 275
Score = 37.7 bits (87), Expect = 0.002
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGV----WDSRNAKFGDSVAIKFALVIALCSITVGPYT 109
S+ +Q +AE T LVFT C + N +AI + L I + ++G +
Sbjct: 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHIS 109
Query: 110 GASMNPARSLAPAIYSNVWTAHW-IYWVAPILGSIVSTLLYKYVFSKDHD 158
GA +NPA ++A A Y ++ ++GS ++ + +F DHD
Sbjct: 110 GAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHD 159
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional.
Length = 283
Score = 69.6 bits (170), Expect = 1e-14
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 9 LYVCSQVLGCLIGVGLVNI---ITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEF 65
LY+ +Q+ G L+ + + +TPE F T P S + QA +AE
Sbjct: 122 LYIGAQLTGSLLASLTLRLMFNVTPE-------------AFFGTTPTDS--SGQALVAEI 166
Query: 66 FSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS 125
+ LL+F GV + + G+ I + I L GP +GASMNPARSL PAI
Sbjct: 167 IISFLLMFVISGV-ATDSRAVGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVM 225
Query: 126 NVWTAHWIYWVAPILGSIVSTLLYKYV 152
+ W+Y V P +G I +Y +
Sbjct: 226 GRYKGIWVYIVGPFVGIIAGGFVYNLI 252
Score = 39.1 bits (91), Expect = 5e-04
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 47 CTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGD----SVAIKFALVIALCS 102
T P + + Q +AE T ++F+ CGV G + + + L++ +
Sbjct: 32 ICTSP-SIVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMI 90
Query: 103 ITVGPYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVF 153
+ G +GA NPA ++ AI+ W +Y A + GS++++L + +F
Sbjct: 91 YSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMF 142
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional.
Length = 250
Score = 68.8 bits (168), Expect = 2e-14
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
IT++ Y +Q LG ++ L+ +T E V + G++ G L ++
Sbjct: 96 ITIITGFFYWIAQCLGSIVACLLLVFVTNGE---SVPTHGVAAG---------LGAIEGV 143
Query: 62 LAEFFSTSLLVFTC-CGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E T LV+T D + G I ++ + GP++G SMNPARS
Sbjct: 144 VMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFG 203
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 153
PA+ S ++ WIYWV P++G ++ L+Y VF
Sbjct: 204 PAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVF 236
Score = 40.7 bits (95), Expect = 1e-04
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGD---------SVAIKFALVIALCSIT 104
S+ +++A+L+EF +T L VF G + D +VA+ A + +
Sbjct: 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSI 73
Query: 105 VGPYTGASMNPARSLAPAIYSNVWT-AHWIYWVAPILGSIVSTLLYKYV 152
+G +NPA +L AI N+ + YW+A LGSIV+ LL +V
Sbjct: 74 AANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFV 122
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional.
Length = 252
Score = 68.7 bits (168), Expect = 2e-14
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 13/157 (8%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
IT++ +LY +Q+LG ++ L+ T S+ LS+G + AF
Sbjct: 98 ITLLRGILYWIAQLLGSVVACLLLKFSTGGL---ETSAFSLSSG---------VGVWNAF 145
Query: 62 LAEFFSTSLLVFTCCGVW-DSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E T LV+T D + G I ++ + G + GASMNPA S
Sbjct: 146 VFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFG 205
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDH 157
PA+ S WT HW+YW P++G ++ L+Y+ +F
Sbjct: 206 PAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGST 242
Score = 38.6 bits (90), Expect = 8e-04
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 57 TVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGD-----------SVAIKFALVIALCSITV 105
++A LAEF ST + VF G + N + ++A FAL +A ++V
Sbjct: 19 ALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVA---VSV 75
Query: 106 GP-YTGASMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKY 151
G +G +NPA + I N+ I YW+A +LGS+V+ LL K+
Sbjct: 76 GANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKF 123
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional.
Length = 274
Score = 64.5 bits (157), Expect = 7e-13
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 9 LYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFST 68
LY+ +Q +G ++ VS G+ TT P + AF EF +T
Sbjct: 125 LYITAQTVGSVLAT-----------YVGVSVYGVKADLMTTKP--AQGCSSAFWVEFIAT 171
Query: 69 SLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVW 128
+++F + S+ G + I L + GP +G SMNPARSL PAI S +
Sbjct: 172 FIVMFLAASL-TSQPQSLGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDF 230
Query: 129 TAHWIYWVAPILGSIVSTLLYK 150
WIY AP +G++ L++
Sbjct: 231 KDIWIYITAPTIGAVAGALMFH 252
Score = 49.5 bits (118), Expect = 2e-07
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 43 SNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCS 102
F L + LAE T +L+F CG+ S G+ +++A L
Sbjct: 30 QRLFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTV 89
Query: 103 ITV----GPYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVF 153
+ V G +GA +NP+ ++A A + + W+ +Y A +GS+++T + V+
Sbjct: 90 VVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVY 145
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional.
Length = 294
Score = 60.9 bits (148), Expect = 2e-11
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 5 VELVLYVCSQVLGCLIGV--------GLVNIITPEEILFPVSSAGLSNGFCTTVPHASLT 56
+L Y +Q+LG +G G E+ + + G + G T P
Sbjct: 126 KKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFA-GVFATYPREGNF 184
Query: 57 TVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPA 116
A +E T++L+ + D N + + + L++ + I+ G TG ++NPA
Sbjct: 185 Y--AIFSELILTAILLLVILAITDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPA 242
Query: 117 RSLAPAIYS------NVWTAH----WIYWVAPILGSIVSTLLYKYV 152
R L P ++S V+T W+ VAP +G+++ LY
Sbjct: 243 RDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKF 288
Score = 31.6 bits (72), Expect = 0.15
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 58 VQAFLAEFFSTSLLVFTCCGVWDSRNA----------KFGDSVAIKFALVIALCSITVGP 107
V+ ++AEF T +L+F GV + + G + + F L+++
Sbjct: 50 VREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSA------G 103
Query: 108 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVST----LLYKYVFSKDHDG 159
+G +NPA +L A++ W Y+VA +LG+ V LY F KDH
Sbjct: 104 ISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFF-KDHGI 159
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional.
Length = 256
Score = 51.1 bits (122), Expect = 4e-08
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 8 VLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFS 67
+ Y SQ+L ++ + + T + + A GF +V LT
Sbjct: 106 MFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFG--------- 156
Query: 68 TSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNV 127
LV+T D R G + LV + GP++G SMNPA + A+ +
Sbjct: 157 ---LVYTVYAAGDPRRGLLGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGS 213
Query: 128 WTAHWIYWVAPILGSIVSTLLYKYV 152
+ +YWV P+LG V+ LLY V
Sbjct: 214 FKNQAVYWVGPLLGGAVAGLLYDNV 238
Score = 36.0 bits (83), Expect = 0.005
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVI-------ALCSIT-- 104
+ ++++LAEF ST VF G S D+ + +L+I AL S
Sbjct: 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYI 77
Query: 105 VGPYTGASMNPARSLAPAI--YSNVWTAHWIYWVAPILGSIVSTLLYK 150
+G +NPA + A+ + +V TA YW++ +L S+++ L K
Sbjct: 78 AANISGGHVNPAVTFGMAVGGHISVPTA-MFYWISQMLASVMACLFLK 124
>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 221
Score = 27.7 bits (62), Expect = 2.7
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 49 TVPHASLTTVQAFLAEFFSTSLLVFTCC--GVWDSRNAKFGDSVAIK 93
T P + V A LAEF LL+ GV+D K D+
Sbjct: 111 THPGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFD 157
>gnl|CDD|212052 cd11483, SLC-NCS1sbd_Mhp1-like, nucleobase-cation-symport-1 (NCS1)
transporter Mhp1-like; solute-binding domain. This NCS1
subfamily includes Microbacterium liquefaciens Mhp1, and
various uncharacterized NCS1s. Mhp1 mediates the uptake
of indolyl methyl- and benzyl-hydantoins as part of a
metabolic salvage pathway for their conversion to amino
acids. Mhp1 has 12 transmembrane (TM) helices (an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12; TMs numbered to conform to the Solute carrier
6 (SLC6) family Aquifex aeolicus LeuT). NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their other known substrates
include allantoin, uracil, thiamine, and nicotinamide
riboside. NCS1s belong to a superfamily which also
contains the solute carrier 5 family sodium/glucose
transporters (SLC5s), and SLC6 neurotransmitter
transporters.
Length = 434
Score = 28.0 bits (63), Expect = 3.1
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 70 LLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWT 129
+ G W+ N + V KF LV+ L I + S N A +L P Y +
Sbjct: 259 AMSGIATGEWNPINV-IQEVVDNKFLLVLTLLFIVFAQW---STNTAANLVPPAYVLMNI 314
Query: 130 AHWI-YWVAPILGSIVSTLLYKYVFSKDHDG 159
I Y A I+ I+ TL + D G
Sbjct: 315 FKPIKYKTAVIIVGILGTLTMPWKLVSDSSG 345
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase
inhibitor.
Length = 565
Score = 27.9 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 23 GLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLA---EFFSTSLLV 72
G N IT + P + G+S CT +P LT+V+ FL + +ST++++
Sbjct: 431 GQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIM 483
>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate
dehydrogenase C-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
C-terminal substrate-binding domain.
Length = 145
Score = 26.8 bits (60), Expect = 5.2
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 9/38 (23%)
Query: 59 QAFLAEFFSTSLLVFTCCGVWD---------SRNAKFG 87
F A F G+ D RN + G
Sbjct: 45 IKFGAALGGGPETFFGLAGLGDLITTCTSELGRNRRVG 82
>gnl|CDD|223074 PHA03396, lef-9, late expression factor 9; Provisional.
Length = 493
Score = 27.2 bits (61), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 121 PAIYSNVWTAH-----------WIYWVAPILGSIVSTLLYK 150
P IY +W + + VA +L S VS LL+K
Sbjct: 323 PLIY-KLWQNYKNEKFSKRLELLLRDVALVLSSNVSYLLFK 362
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.425
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,860,559
Number of extensions: 789203
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 58
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)