RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10806
(178 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 170 bits (432), Expect = 9e-53
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP + G T H +LT
Sbjct: 127 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVTTVHGNLTAGHGL 177
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT D + SVA+ +A+ + YTGASMNPARS P
Sbjct: 178 LVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 237
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVESS 174
A+ W HWIYWV PI+G++++ LY+YVF D + K R ++ + +
Sbjct: 238 AVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQT 290
Score = 59.4 bits (144), Expect = 4e-11
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGP 107
+ +A AEF + + V G W +++ F L IA G
Sbjct: 48 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGH 107
Query: 108 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
+G +NPA ++A + Y A LG+I+ + V G
Sbjct: 108 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG 160
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 167 bits (425), Expect = 4e-52
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP + G T H +LT
Sbjct: 88 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVTTVHGNLTAGHGL 138
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT D + SVA+ +A+ + YTGASMNPARS P
Sbjct: 139 LVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 198
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVE 172
A+ W HWIYWV PI+G++++ LY+YVF D + K R ++ +
Sbjct: 199 AVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQ 249
Score = 58.2 bits (141), Expect = 8e-11
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGP 107
+ +A AEF + + V G W +++ F L IA G
Sbjct: 9 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGH 68
Query: 108 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
+G +NPA ++A + Y A LG+I+ + V G
Sbjct: 69 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG 121
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 161 bits (408), Expect = 6e-50
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I+++ ++Y+ +Q +G ++ +++ IT N + + Q
Sbjct: 91 ISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DNSLGLNALAPGVNSGQGL 141
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
E T LV D R G S + +AL + YTG +NPARS
Sbjct: 142 GIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGS 201
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF-SKDHDGKNRPEQLSPADVE 172
++ ++ + HWI+WV P +G+ ++ L+Y ++ + D +R + + VE
Sbjct: 202 SVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 253
Score = 52.8 bits (127), Expect = 6e-09
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 59 QAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS--------VAIKFALVIALCSITVGP 107
+A +AEF + L +F G + + V++ F L IA + +VG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 108 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFS 154
+GA +NPA +L + + +Y +A +G+IV+T + + S
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 160 bits (406), Expect = 1e-49
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
++++ + YV +Q+LG + G ++ +TP + H ++ QA
Sbjct: 81 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 131
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
+ E F T V +D R SVA+ + L + YTGA MNPARS AP
Sbjct: 132 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHD 158
AI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK 228
Score = 55.8 bits (135), Expect = 5e-10
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDS---VAIKFALVIALCSITVGPYTG 110
S + +A AEFF+T VF G R A VA+ F L +A VG +G
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISG 64
Query: 111 ASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
A +NPA + A + S + Y VA +LG++ + V G
Sbjct: 65 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG 114
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 158 bits (402), Expect = 1e-49
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 9/152 (5%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I++ + V Y+ +Q LG +IG G++ ++TP + G T+ H +LT
Sbjct: 79 ISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV---------VGGLGVTMVHGNLTAGHGL 129
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T LVFT DS+ S+A+ +A+ + YTGASMNPARS P
Sbjct: 130 LVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGP 189
Query: 122 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 153
A+ W HWIYWV PI+G++++ LY+YVF
Sbjct: 190 AVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
Score = 55.3 bits (134), Expect = 5e-10
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 59 QAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGPYTGAS 112
+A AEF + + V G W +++ F L IA G +G
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGH 64
Query: 113 MNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
+NPA ++A + Y A LG+I+ + V G
Sbjct: 65 INPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG 112
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 154 bits (391), Expect = 2e-47
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I+++ YV +Q++G + G G++ + P + + T QA
Sbjct: 83 ISLLRAFFYVAAQLVGAIAGAGILYGVAPLNA---------RGNLAVNALNNNTTQGQAM 133
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
+ E T L DSR S A+ L + L + +TG SMNPARS P
Sbjct: 134 VVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193
Query: 122 AIYSNVWTA-HWIYWVAPILGSIVSTLLYKYVFSKD 156
A+ N ++ HW++WV PI+G++++ +LY Y+ +
Sbjct: 194 AVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229
Score = 54.7 bits (132), Expect = 1e-09
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGD--SVAIKFALVIALCSITVGPYTGA 111
S+ ++A AEF +T + VF G + +A+ F L I + +GP +G
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGG 67
Query: 112 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
+NPA +LA + + + + Y A ++G+I + V + G
Sbjct: 68 HINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG 116
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 145 bits (368), Expect = 3e-44
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
E+V YV +QV+G ++ L+ +I + F +++G ++ + + A
Sbjct: 79 FPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSAL 138
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
+ E ++ + G D +AI A L + P T S+NPARS A
Sbjct: 139 VVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLAC--TLIHLISIPVTNTSVNPARSTAV 196
Query: 122 AIYSNVWTA--HWIYWVAPILGSIVSTLLYKYVFSK 155
AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 197 AIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232
Score = 51.0 bits (123), Expect = 2e-08
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 6/129 (4%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPY 108
+ + AE F T LVF G V + + G VA+ F L + + VG
Sbjct: 1 ASHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHI 60
Query: 109 TGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLS 167
+G NPA ++ Y +A ++G IV+ L + S +
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFA 120
Query: 168 PADVESSVP 176
P
Sbjct: 121 SNGYGEHSP 129
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 145 bits (367), Expect = 2e-43
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 15/160 (9%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
+ ++ ++Y+ +Q LG + GVGLV G A
Sbjct: 137 VELLRALVYMIAQCLGAICGVGLVKAFMKGPYN--------QFGGGANSVALGYNKGTAL 188
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSV----AIKFALVIALCSITVGPYTGASMNPAR 117
AE T +LV+T D + + V + + + + P TG +NPAR
Sbjct: 189 GAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPAR 248
Query: 118 SLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYVFS 154
S A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 249 SFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLR 288
Score = 53.9 bits (130), Expect = 3e-09
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS----VAIKFALVIALCSITVG 106
+ +A +AEF +T L ++ G +A F +I +
Sbjct: 57 LWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA 116
Query: 107 PYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFS 154
+G +NPA + + V +Y +A LG+I L K
Sbjct: 117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK 165
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 138 bits (350), Expect = 3e-41
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
LV YV +QV G ++ + +I + + SNG+ P + V A
Sbjct: 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SNGYGEHSP-GGYSLVSAL 161
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
L E T+ + G R +AI A + L + P T S+NPARS
Sbjct: 162 LIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLA--LTLIHLISIPVTNTSVNPARSTGQ 219
Query: 122 AIYSNVWT--AHWIYWVAPILGSIVSTLLYKYVFSKD 156
A++ W W++W+API+G +++K KD
Sbjct: 220 ALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
Score = 53.9 bits (130), Expect = 2e-09
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPY 108
S + LAEFF T LVF CG V+ + + G VA+ F L + + VG
Sbjct: 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGI 85
Query: 109 TGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDG 159
+G NPA S+ + ++ Y +A + G+IV+ + +
Sbjct: 86 SGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGI 137
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 131 bits (332), Expect = 2e-38
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
I +L +Q++ + G + +TP EI F + +
Sbjct: 125 IPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAF------------ANALGGGASRTRGL 172
Query: 62 LAEFFSTSLLVFTCCGVWDS-RNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
E F T++L T + A + I AL + + YTGA +NPARS
Sbjct: 173 FLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIAL--LIAHLICIYYTGAGLNPARSFG 230
Query: 121 PAIYSNVWTA-HWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 165
PA+ + + HWIYW+ PILG+ ++ +++ ++ N P Q
Sbjct: 231 PAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTN-PGQ 275
Score = 52.0 bits (125), Expect = 1e-08
Identities = 14/117 (11%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 58 VQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS--------VAIKFALVIALCSITVG 106
A EF T L +++ + + ++ F + +
Sbjct: 45 FIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITY 104
Query: 107 PYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNR 162
+G ++NPA +LA + + + I+ + + + + N
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANA 161
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 117 bits (294), Expect = 5e-33
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 2 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 61
E+V Y+ +Q+LG G + A G T P ++ QA
Sbjct: 95 FPGREVVPYIIAQLLGAAFGSFIFLQCAGIG-------AATVGGLGATAPFPGISYWQAM 147
Query: 62 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 121
LAE T LL+ T G+ A I L +A T+G +G+S+NPAR+ P
Sbjct: 148 LAEVVGTFLLMITIMGIAVDERAP-KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGP 206
Query: 122 AIYSNV------WTAHWIYWVAPILGSIVSTLLYKYVFSK 155
+ + W + IY + PI+G++++ L Y+Y+ S+
Sbjct: 207 YLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
Score = 52.3 bits (126), Expect = 7e-09
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 22/129 (17%)
Query: 55 LTTVQAFLAEFFSTSLLVFTCCGV--------------------WDSRNAKFG-DSVAIK 93
++ + +AEF T +LVF G ++ +
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 94 FALVIALCSITVGPYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYV 152
F IA +G +G +NPA ++ Y +A +LG+ + ++
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121
Query: 153 FSKDHDGKN 161
Sbjct: 122 AGIGAATVG 130
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 110 bits (278), Expect = 1e-30
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 16/172 (9%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEF 65
++ +Y +Q+LG +G V + I + T+ + S++ AF E
Sbjct: 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFA---WETS-RNPSISLTGAFFNEL 142
Query: 66 FSTSLLVFTCCGVWDSRNAKF--GDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAI 123
T +L+ V D ++ L+I IT G TG ++NP+R L
Sbjct: 143 ILTGILLLVILVVVDENICGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRF 202
Query: 124 ------YSNVWTAH----WIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 165
+ +T W+ VAP +GS+V Y V D N +
Sbjct: 203 LSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLANNEKD 254
Score = 52.2 bits (126), Expect = 8e-09
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 56 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFG-DSVAIKFALVIALCSITVGPYTGA 111
+ V+ F+ EF T +L+F G + + + + + L + + +GA
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGA 67
Query: 112 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIV-STLLY 149
+N A S+ + + +Y+ A +LG+ V ++ +Y
Sbjct: 68 HLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVY 107
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 107 bits (269), Expect = 4e-29
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 25/192 (13%)
Query: 6 ELVLYVCSQVLGCLIGVGLVNII----------TPEEILFPVSSAGLSNGFCTTVPHASL 55
+++ ++ SQV G LV + T + V S L+ F T P+ +
Sbjct: 85 KVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTY-PNPHI 143
Query: 56 TTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVA-IKFALVIALCSITVGPYTGASMN 114
VQAF E T++L+ + D N +A + L+IA+ ++GP TG +MN
Sbjct: 144 NFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMN 203
Query: 115 PARSLAPAI-------------YSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKN 161
PAR P + + PI+G+IV Y+ + +
Sbjct: 204 PARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDI 263
Query: 162 RPEQLSPADVES 173
+ S
Sbjct: 264 CVVEEKETTTPS 275
Score = 47.2 bits (113), Expect = 5e-07
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 56 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFGD-SVAIKFALVIALCSITVGPYTGA 111
T +AEF T LL+F G A FG +++ F L +A+ +GA
Sbjct: 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGA 65
Query: 112 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLL 148
+NPA ++A +++ + V+ + G+ + L
Sbjct: 66 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAAL 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-06
Identities = 37/252 (14%), Positives = 69/252 (27%), Gaps = 92/252 (36%)
Query: 7 LVLYVCSQ--VLGCL------IGVGLVNIITPEEILFPVSS--AGLSNGFCTTVPHAS-- 54
+ L VC V + + + N +PE +L + + + + H+S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 55 ---LTTVQAFLAEFFST-----SLLVFTCCGVWD----------------SRNAKFGDSV 90
+ ++QA L + LLV V + +R + D +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 91 AIK----------------------FALVIALCSITVGPYTGASMNP-ARSLAPAIYSNV 127
+ + C P + NP S+ +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRD- 339
Query: 128 WTAHWIYW-------VAPILGSIVSTL-------LYKY--VFSKDHDGKNRPEQL----- 166
A W W + I+ S ++ L ++ VF + P L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIW 396
Query: 167 ---SPADVESSV 175
+DV V
Sbjct: 397 FDVIKSDVMVVV 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.425
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,662,255
Number of extensions: 146904
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 34
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)