RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10806
(178 letters)
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 98.6 bits (245), Expect = 1e-26
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 60
++++ + Y+ +Q+LG + G ++ +TP + ++ L G QA
Sbjct: 75 QMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG---------QA 125
Query: 61 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E F T V +D R SVA+ + L + YTGA MNPARS A
Sbjct: 126 TIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 185
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 153
PAI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 186 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLL 218
Score = 43.2 bits (101), Expect = 4e-06
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 54 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDSVAIKFALVIALCSITVGPYTGA 111
S + +A AEFF++ VF G + + VA+ F L +A VG +GA
Sbjct: 1 SASFWRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 60
Query: 112 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPA 169
+NPA + A + S + Y VA +LG++ + V G L P
Sbjct: 61 HVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPG 119
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 97.5 bits (242), Expect = 6e-26
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 60
I+++ ++Y+ +Q +G ++ +++ IT N + + Q
Sbjct: 90 QISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DNSLGLNALAPGVNSGQG 140
Query: 61 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
E T LV D R G S + +AL + YTG +NPARS
Sbjct: 141 LGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFG 200
Query: 121 PAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 153
++ ++ + HWI+WV P +G+ ++ L+Y ++
Sbjct: 201 SSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
Score = 45.5 bits (107), Expect = 7e-07
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 59 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDS-----------VAIKFALVIALCSITVGP 107
+A +AEF + L +F G + + V++ F L IA + +VG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 108 YTGASMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 166
+GA +NPA +L + + I Y +A +G+IV+T + + S D L
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 167 SPA 169
+P
Sbjct: 132 APG 134
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 93.7 bits (232), Expect = 1e-24
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 60
E+V YV +QV+G ++ L+ +I + F +++G ++ + + A
Sbjct: 75 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSA 134
Query: 61 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLA 120
+ E ++ + G D +AI + L + P T S+NPARS A
Sbjct: 135 LVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL--ALTLIHLISIPVTNTSVNPARSTA 192
Query: 121 PAIYSNVWT--AHWIYWVAPILGSIVSTLLYKYVFSK 155
AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 193 VAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 229
Score = 39.8 bits (92), Expect = 7e-05
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 59 QAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPYTGASM 113
+ AE F T LVF CG V + + G VA+ F L + + VG +G
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 62
Query: 114 NPARSLAPAIYSNVWTAHWIYWVAP-ILGSIVSTLLYKYVFSKDHD 158
NPA ++ + +V ++G IV+ L + S
Sbjct: 63 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTG 108
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 91.8 bits (227), Expect = 9e-24
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 1 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSN---------GFCTTVP 51
+++ ++ SQV G LV + + + G +T P
Sbjct: 75 CFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYP 134
Query: 52 HASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKF-GDSVAIKFALVIALCSITVGPYTG 110
+ + VQAF E T++L+ + D N G + L+IA+ ++GP TG
Sbjct: 135 NPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTG 194
Query: 111 ASMNPARSLAPAIYS-------------NVWTAHWIYWVAPILGSIVSTLLYKYVFSK 155
+MNPAR P +++ + PI+G+IV Y+ + +
Sbjct: 195 FAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 252
Score = 43.2 bits (101), Expect = 5e-06
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 56 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFGD-SVAIKFALVIALCSITVGPYTGA 111
T +AEF T LL+F G A FG +++ + L +A+ +GA
Sbjct: 1 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGA 60
Query: 112 SMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPAD 170
+NPA ++A +++ I + V+ + G+ + L ++ + +
Sbjct: 61 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGS 120
Query: 171 VES 173
VES
Sbjct: 121 VES 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.425
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,253
Number of extensions: 27145
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 8
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)