Query psy10809
Match_columns 136
No_of_seqs 151 out of 1039
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 19:01:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4424|consensus 100.0 2.9E-34 6.2E-39 219.6 12.9 134 2-136 141-275 (623)
2 smart00325 RhoGEF Guanine nucl 99.9 3.2E-26 7E-31 157.3 9.4 100 2-101 81-180 (180)
3 KOG3523|consensus 99.9 2.4E-25 5.1E-30 171.7 11.6 134 3-136 341-478 (695)
4 cd00160 RhoGEF Guanine nucleot 99.9 7.7E-25 1.7E-29 150.5 9.8 97 2-100 84-181 (181)
5 KOG4305|consensus 99.9 2.5E-24 5.4E-29 175.2 9.9 134 1-134 420-560 (1029)
6 PF00621 RhoGEF: RhoGEF domain 99.9 2.5E-22 5.3E-27 137.4 9.9 99 3-101 81-180 (180)
7 KOG3521|consensus 99.9 5.7E-22 1.2E-26 154.4 10.3 124 1-126 268-392 (846)
8 KOG3520|consensus 99.9 8.1E-22 1.7E-26 161.5 11.5 116 6-121 483-599 (1167)
9 KOG3518|consensus 99.9 9.1E-21 2E-25 138.7 12.5 115 5-120 206-322 (521)
10 KOG2996|consensus 99.8 1E-19 2.2E-24 140.5 9.4 116 5-121 279-395 (865)
11 KOG3522|consensus 99.7 3.9E-16 8.5E-21 124.7 10.6 112 6-136 90-204 (925)
12 KOG3524|consensus 99.6 6.5E-16 1.4E-20 121.5 8.6 128 6-135 466-594 (850)
13 KOG3519|consensus 99.6 3E-16 6.4E-21 128.0 6.0 117 2-118 422-542 (756)
14 COG5422 ROM1 RhoGEF, Guanine n 99.5 1.2E-14 2.6E-19 116.8 4.2 134 2-135 570-708 (1175)
15 KOG3531|consensus 99.3 1.9E-12 4.2E-17 103.9 4.1 126 6-136 627-753 (1036)
16 KOG2070|consensus 99.3 1.6E-11 3.5E-16 94.1 7.2 108 3-113 184-292 (661)
17 KOG0689|consensus 99.2 2.1E-11 4.6E-16 93.6 3.5 91 8-103 151-241 (448)
18 KOG4240|consensus 99.1 1.3E-10 2.8E-15 95.8 4.8 96 2-105 716-811 (1025)
19 KOG4269|consensus 96.8 0.0027 5.8E-08 52.9 5.0 107 3-109 419-544 (1112)
20 KOG3524|consensus 96.6 0.0027 5.8E-08 51.7 4.1 109 2-112 472-581 (850)
21 PHA03188 UL14 tegument protein 75.2 13 0.00028 25.9 5.5 60 76-135 41-103 (199)
22 PF09779 Ima1_N: Ima1 N-termin 66.6 19 0.00041 23.5 4.7 31 65-95 84-115 (131)
23 PHA03185 UL14 tegument protein 64.0 28 0.00061 24.5 5.3 60 76-135 37-99 (214)
24 PRK08311 putative RNA polymera 63.4 5.3 0.00011 28.9 1.8 23 58-81 138-160 (237)
25 PF03580 Herpes_UL14: Herpesvi 62.8 34 0.00073 23.0 5.4 61 75-135 30-93 (149)
26 PHA03187 UL14 tegument protein 61.5 33 0.00071 25.6 5.5 60 76-135 37-99 (322)
27 PF15036 IL34: Interleukin 34; 59.0 45 0.00098 22.6 5.4 53 68-120 80-133 (169)
28 PHA03190 UL14 tegument protein 58.5 44 0.00095 23.4 5.4 60 76-135 37-99 (196)
29 PF15601 Imm42: Immunity prote 54.5 33 0.00072 22.6 4.2 34 62-99 36-69 (134)
30 TIGR02895 spore_sigI RNA polym 52.0 8.3 0.00018 27.5 1.2 26 57-83 126-151 (218)
31 PF06015 Chordopox_A30L: Chord 48.4 54 0.0012 19.1 5.1 33 67-104 12-44 (71)
32 PF10805 DUF2730: Protein of u 48.0 67 0.0015 20.1 5.9 45 67-112 53-97 (106)
33 PF15469 Sec5: Exocyst complex 46.9 57 0.0012 22.2 4.7 73 8-80 101-174 (182)
34 PHA03191 UL14 tegument protein 45.3 82 0.0018 22.6 5.2 61 75-135 37-100 (238)
35 PF06971 Put_DNA-bind_N: Putat 44.4 16 0.00035 19.7 1.3 18 57-74 7-24 (50)
36 PHA01756 hypothetical protein 41.3 10 0.00022 26.7 0.3 17 48-64 6-22 (268)
37 PHA03044 IMV membrane protein; 38.6 82 0.0018 18.4 5.3 33 67-104 14-46 (74)
38 PRK15366 type III secretion sy 38.4 75 0.0016 18.9 3.5 46 67-115 6-51 (80)
39 PF10545 MADF_DNA_bdg: Alcohol 37.4 81 0.0017 17.9 4.1 28 77-104 14-41 (85)
40 PF08650 DASH_Dad4: DASH compl 33.6 1E+02 0.0022 18.0 4.9 43 66-115 11-53 (72)
41 PF07303 Occludin_ELL: Occludi 32.5 1.3E+02 0.0027 18.7 7.0 52 68-119 41-96 (101)
42 KOG0931|consensus 32.5 1.6E+02 0.0035 23.9 5.5 65 66-135 350-419 (627)
43 KOG3522|consensus 30.9 95 0.0021 27.0 4.3 22 82-103 167-188 (925)
44 PF12311 DUF3632: Protein of u 30.8 69 0.0015 21.5 3.1 31 68-98 4-34 (184)
45 PF15157 IQ-like: IQ-like 29.8 33 0.00072 20.8 1.2 38 87-125 4-41 (97)
46 KOG4025|consensus 29.6 1.9E+02 0.0041 20.0 4.9 54 49-102 82-143 (207)
47 PF11267 DUF3067: Protein of u 29.3 1E+02 0.0022 19.2 3.3 36 10-45 46-81 (99)
48 KOG1300|consensus 29.3 3.4E+02 0.0074 22.7 7.0 55 48-123 321-375 (593)
49 PF08597 eIF3_subunit: Transla 27.0 1.3E+02 0.0027 21.8 4.0 22 55-76 154-175 (245)
50 PF11945 WASH_WAHD: WAHD domai 27.0 2.7E+02 0.0058 21.0 5.8 36 84-119 22-59 (297)
51 PHA02674 ORF107 virion morphog 25.6 1.3E+02 0.0029 16.7 5.0 31 67-103 13-43 (60)
52 PF03790 KNOX1: KNOX1 domain ; 23.8 1.3E+02 0.0028 15.9 3.5 15 62-76 11-25 (45)
53 KOG4465|consensus 23.0 1.1E+02 0.0023 24.1 3.1 41 3-43 113-158 (598)
54 PF04100 Vps53_N: Vps53-like, 23.0 3.2E+02 0.0069 21.3 5.8 37 77-113 51-87 (383)
55 PF14355 Abi_C: Abortive infec 22.6 1.7E+02 0.0037 16.9 5.0 27 74-101 14-40 (80)
56 PF09824 ArsR: ArsR transcript 22.3 98 0.0021 21.1 2.5 64 9-76 78-146 (160)
57 PF04782 DUF632: Protein of un 21.4 3.7E+02 0.0081 20.4 5.8 32 84-116 144-175 (312)
58 PRK06330 transcript cleavage f 20.8 5.5E+02 0.012 22.1 7.0 69 2-82 16-91 (718)
59 PF04253 TFR_dimer: Transferri 20.3 2.4E+02 0.0052 17.8 5.2 27 81-107 3-29 (125)
No 1
>KOG4424|consensus
Probab=100.00 E-value=2.9e-34 Score=219.63 Aligned_cols=134 Identities=22% Similarity=0.495 Sum_probs=128.2
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
++|||++|+.|+.||++|..++..+. ++|.|+.++.++++++.|++++|.++||.||||||||.|||+++++++|++.|
T Consensus 141 lAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~ 220 (623)
T KOG4424|consen 141 LAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDP 220 (623)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCc
Confidence 68999999999999999999999955 68999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcccccccccccC
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ 136 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~q 136 (136)
|+.++.+|++.|...+.++|.++++.|+.++|++++.++++ .+.+|+|+|++||+
T Consensus 221 D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~-e~dIV~PsreLiKE 275 (623)
T KOG4424|consen 221 DYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN-EEDIVSPSRELIKE 275 (623)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccccCcHHHHhhc
Confidence 99999999999999999999999999999999999999954 56678999999985
No 2
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.94 E-value=3.2e-26 Score=157.26 Aligned_cols=100 Identities=36% Similarity=0.692 Sum_probs=95.8
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|.+++++|..||.+++.+...+..+++++.|..|++.++..+.+++++|.+||++||||++||++||++|+|+||++|+|
T Consensus 81 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d 160 (180)
T smart00325 81 LEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHED 160 (180)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCC
Confidence 46889999999999999999999888899999999999998888889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q psy10809 82 RKSLQNARQQLEDLSRQMHD 101 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~ 101 (136)
+..+..|++.++.++.+||+
T Consensus 161 ~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 161 REDLKKALKAIKELANQVNE 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999995
No 3
>KOG3523|consensus
Probab=99.93 E-value=2.4e-25 Score=171.66 Aligned_cols=134 Identities=24% Similarity=0.421 Sum_probs=124.3
Q ss_pred CchhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 3 LPMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 3 ~~~~~~Y~~Y~~~~~~~~~~l~~~-~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
..+|.+|..||.|......+++.+ ..|+.|.+.++.++.++.|.++++.||||.|+|||||+|||++.|++.|++.+++
T Consensus 341 ~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser 420 (695)
T KOG3523|consen 341 AKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSER 420 (695)
T ss_pred ccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 468999999999999999999995 4799999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhc-CC--CcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVE-GC--DILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~-~~--~~l~~~~R~~i~q 136 (136)
|....+|+.++++++..||+..+.++..+.|..|..++.- +. -.|+...|+++|+
T Consensus 421 ~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~ 478 (695)
T KOG3523|consen 421 YETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKR 478 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhc
Confidence 9999999999999999999999999999999999999854 21 1277899999985
No 4
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.92 E-value=7.7e-25 Score=150.50 Aligned_cols=97 Identities=33% Similarity=0.605 Sum_probs=91.8
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
|++++++|..||.+++.+...+++++ .++.|.+|++.++. .+++++|.++|++||||++||++||++|+|+||++||
T Consensus 84 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~ 161 (181)
T cd00160 84 LAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--ECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHE 161 (181)
T ss_pred hhhHHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--hcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCC
Confidence 57799999999999999999999965 69999999999887 5679999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy10809 81 ERKSLQNARQQLEDLSRQMH 100 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in 100 (136)
|+..+..|++.+++++.+||
T Consensus 162 d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 162 DREDLKKALEAIKEVASQVN 181 (181)
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999987
No 5
>KOG4305|consensus
Probab=99.91 E-value=2.5e-24 Score=175.20 Aligned_cols=134 Identities=27% Similarity=0.406 Sum_probs=122.2
Q ss_pred CCCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcC-CCC
Q psy10809 1 MLLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHT-PHD 78 (136)
Q Consensus 1 ~~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t-~~~ 78 (136)
+|+|+++.|..||++++.|...++. ++.++.|+.|++.|+..+.|++++|.+||.+|+||+.||||||++|+|+| |.+
T Consensus 420 ~~lp~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n 499 (1029)
T KOG4305|consen 420 AWLPKAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPEN 499 (1029)
T ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccchhhhhccccchhheeeHHHHHHHhcCCCCC
Confidence 5899999999999999999999987 67899999999999999999999999999999999999999999999999 677
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC---CC--cccccccccc
Q psy10809 79 HVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG---CD--ILLDVNQVFV 134 (136)
Q Consensus 79 ~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~---~~--~l~~~~R~~i 134 (136)
|||+..+.+|+++++.++.++|...+++|+..++..++..+.-. .. ++.+|.|.++
T Consensus 500 ~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~ 560 (1029)
T KOG4305|consen 500 HPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEPGEAVNLGLNDPERKLI 560 (1029)
T ss_pred CccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccccccccccccChhhhcc
Confidence 79999999999999999999999999999999999999888533 11 2456777665
No 6
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.88 E-value=2.5e-22 Score=137.35 Aligned_cols=99 Identities=34% Similarity=0.601 Sum_probs=92.9
Q ss_pred CchhhhHHHHHhcHHHHHHHHHHHhc-ChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 3 LPMLGIYQEYVRNHHYSLQVLTECKQ-QPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 3 ~~~~~~Y~~Y~~~~~~~~~~l~~~~~-~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
.+++.+|..||.+++.+...++++.+ +..|..|++.++..+..+.+++.++|+.|+||++||+++|++|+++||++|+|
T Consensus 81 ~~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d 160 (180)
T PF00621_consen 81 EPFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPD 160 (180)
T ss_dssp TTGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTH
T ss_pred cccccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChh
Confidence 57889999999999999999998654 66699999999988888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q psy10809 82 RKSLQNARQQLEDLSRQMHD 101 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~ 101 (136)
+..+..|++.+++++.+||+
T Consensus 161 ~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 161 YKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999995
No 7
>KOG3521|consensus
Probab=99.87 E-value=5.7e-22 Score=154.37 Aligned_cols=124 Identities=23% Similarity=0.379 Sum_probs=116.0
Q ss_pred CCCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCC
Q psy10809 1 MLLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDH 79 (136)
Q Consensus 1 ~~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~ 79 (136)
+|.++|..|..||..+..++.++++ .+.|+.|++|+.+|++++.|.++-|.+.+++|+|||+||+|||+.++|.|+ +-
T Consensus 268 ~f~s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~-d~ 346 (846)
T KOG3521|consen 268 DFGSWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTT-DE 346 (846)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCC-CH
Confidence 3678899999999999999999998 567999999999999999999999999999999999999999999999999 77
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcc
Q psy10809 80 VERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDIL 126 (136)
Q Consensus 80 ~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l 126 (136)
.+.+.+...++.++.++.+||..++..+..++|..+-.+| ++++.+
T Consensus 347 ~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rI-e~ydvV 392 (846)
T KOG3521|consen 347 REREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRI-EGYDVV 392 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-Cccccc
Confidence 8999999999999999999999999999999999999998 555643
No 8
>KOG3520|consensus
Probab=99.87 E-value=8.1e-22 Score=161.48 Aligned_cols=116 Identities=19% Similarity=0.367 Sum_probs=111.8
Q ss_pred hhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHH
Q psy10809 6 LGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKS 84 (136)
Q Consensus 6 ~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~ 84 (136)
-++|+.||+++..|...++.+. +++.|..|++.++.++.|++++|.++++..+|||+||||||+.|+|+|..+..|++.
T Consensus 483 ~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~ 562 (1167)
T KOG3520|consen 483 KKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREK 562 (1167)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHH
Confidence 3689999999999999999854 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhc
Q psy10809 85 LQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVE 121 (136)
Q Consensus 85 l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~ 121 (136)
|..|++.+++|+..||.++++.|+.++|.++++|++.
T Consensus 563 L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~ 599 (1167)
T KOG3520|consen 563 LQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDA 599 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999964
No 9
>KOG3518|consensus
Probab=99.86 E-value=9.1e-21 Score=138.66 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=105.3
Q ss_pred hhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCC-C-chh
Q psy10809 5 MLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHD-H-VER 82 (136)
Q Consensus 5 ~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~-~-~d~ 82 (136)
-|..|.+||.||++.+.++.+|++++-.+.++++-+..-. +.++|.+||++|||||.+|.|+|.+|.|+.|.+ | +++
T Consensus 206 efe~yieyctny~rmmatl~~~~q~~ilaka~qerq~al~-hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel 284 (521)
T KOG3518|consen 206 EFEDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEALK-HSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEEL 284 (521)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 4789999999999999999999999999999987665443 699999999999999999999999999999965 4 468
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHh
Q psy10809 83 KSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120 (136)
Q Consensus 83 ~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~ 120 (136)
..+.+|++.|+..+.+||+.+++.|...++-++|.-+.
T Consensus 285 ~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lq 322 (521)
T KOG3518|consen 285 DQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQ 322 (521)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998874
No 10
>KOG2996|consensus
Probab=99.81 E-value=1e-19 Score=140.53 Aligned_cols=116 Identities=24% Similarity=0.355 Sum_probs=106.3
Q ss_pred hhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhH
Q psy10809 5 MLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERK 83 (136)
Q Consensus 5 ~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~ 83 (136)
.|-+|+.||++.+.|...+++ ++.++.+..-+++|......++.+|.++|..|+||+.+|+|||++|.|+|....++ .
T Consensus 279 r~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~ek-~ 357 (865)
T KOG2996|consen 279 RLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASEK-R 357 (865)
T ss_pred HHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCChh-h
Confidence 467999999999999999999 56688899999999988776789999999999999999999999999999955554 4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhc
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVE 121 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~ 121 (136)
.|++|+++|++++..||+.++..|....+.++|.+|.+
T Consensus 358 ~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIen 395 (865)
T KOG2996|consen 358 NLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIEN 395 (865)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999854
No 11
>KOG3522|consensus
Probab=99.67 E-value=3.9e-16 Score=124.73 Aligned_cols=112 Identities=30% Similarity=0.426 Sum_probs=97.3
Q ss_pred hhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHHH
Q psy10809 6 LGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSL 85 (136)
Q Consensus 6 ~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~l 85 (136)
..+|..||+|+.+|...+...+ .|.|..|++ ++++| |+|+|.|+|+ ++|+||.+|||+..|
T Consensus 90 ~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~---------------l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~L 150 (925)
T KOG3522|consen 90 LAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE---------------LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLIL 150 (925)
T ss_pred HHHHHHHHhchhHHHHHHHHhc-chHHHHHHH---------------HHhcc--CCchHHHHHH-HhhcCCcCCCchHHH
Confidence 5799999999999999998754 899999988 89999 9999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHh---cCCCcccccccccccC
Q psy10809 86 QNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV---EGCDILLDVNQVFVRQ 136 (136)
Q Consensus 86 ~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~---~~~~~l~~~~R~~i~q 136 (136)
+.|...+++++..+|+.++.++...++.+.-+.|. ++...|..+.|.|+.|
T Consensus 151 q~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~ 204 (925)
T KOG3522|consen 151 QLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQ 204 (925)
T ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHH
Confidence 99999999999999999998887777765444442 3345577888988865
No 12
>KOG3524|consensus
Probab=99.64 E-value=6.5e-16 Score=121.50 Aligned_cols=128 Identities=22% Similarity=0.432 Sum_probs=117.5
Q ss_pred hhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHH
Q psy10809 6 LGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKS 84 (136)
Q Consensus 6 ~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~ 84 (136)
.+.|-.|++-++.....++.|. ++|.|++|++.-+..|.|++++|.++++.||||+|.-.|||+++.| +. +.+|+..
T Consensus 466 ~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k-~s-~N~dk~~ 543 (850)
T KOG3524|consen 466 KKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK-KS-DNKDKNN 543 (850)
T ss_pred HHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh-hc-cCcchhh
Confidence 3578888888888888888875 6999999999999999999999999999999999999999999999 44 8899999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCccccccccccc
Q psy10809 85 LQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVR 135 (136)
Q Consensus 85 l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~ 135 (136)
+++|...++++..+||+-++..|+...+...-..|.|=+++|+..+|.||+
T Consensus 544 leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~lvssnrsfi~ 594 (850)
T KOG3524|consen 544 LEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAILVSSNRSFIR 594 (850)
T ss_pred HHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchhheeccchHHH
Confidence 999999999999999999999999999999988886666679999999986
No 13
>KOG3519|consensus
Probab=99.63 E-value=3e-16 Score=127.95 Aligned_cols=117 Identities=25% Similarity=0.359 Sum_probs=105.1
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
+.+.|.+|.+||++++.+...+..+++++.+..|+..|.....-...+|.++|++|+||+++|||+|.++++.|+.+|.|
T Consensus 422 ~~~~f~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~ 501 (756)
T KOG3519|consen 422 QLDVFKIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICKYPLLLNELLDSTPLESSD 501 (756)
T ss_pred hcccceeechhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccCCchhhhccHHHHhccCchhhhhhhhhccCCcch
Confidence 56778899999999999999999999999999999999865554458999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHh----HHHHHHHHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETEN----LRKNLAVERL 118 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~----~~~l~~~~~~ 118 (136)
|..+..|..+|+.+...||+.++..|. ...+.+.+..
T Consensus 502 ~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~ 542 (756)
T KOG3519|consen 502 YVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSG 542 (756)
T ss_pred hhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhcc
Confidence 999999999999999999999999988 5555554443
No 14
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-14 Score=116.82 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=116.5
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
++|+|..+..|.++.+.+...++.-+ .+|.|+.|....+.-....++.+++||.+|+-|++||+||+++++|.|.++.|
T Consensus 570 ~vP~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~ 649 (1175)
T COG5422 570 YVPKFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNP 649 (1175)
T ss_pred hhhhhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcchhhhhcccceecCCcccchhhHHHHhhhcccCCCCCc
Confidence 68999999999999999999987644 59999999999885555568899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCC----ccccccccccc
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCD----ILLDVNQVFVR 135 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~----~l~~~~R~~i~ 135 (136)
|++++.+++++++++...+|-..+.+++.--+..+...|.-+.+ .+.++.|..|.
T Consensus 650 D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~e~~~lgl~D~~rkii~ 708 (1175)
T COG5422 650 DTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRKIIF 708 (1175)
T ss_pred chhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCchhhcccccchhHHHHH
Confidence 99999999999999999999999999999999888766643322 24566665553
No 15
>KOG3531|consensus
Probab=99.30 E-value=1.9e-12 Score=103.88 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=114.9
Q ss_pred hhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHH
Q psy10809 6 LGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKS 84 (136)
Q Consensus 6 ~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~ 84 (136)
+++|.+|...+......++. .+-..+|.++.+.++....| .+++..|+++|++|+..|.+.|+.|..+-+++|.||.+
T Consensus 627 l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvc-yLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad 705 (1036)
T KOG3531|consen 627 LKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVC-YLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFAD 705 (1036)
T ss_pred cchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhcc-ccccchhhhccccHHHHHHHHHHHhhcccCCCccchHH
Confidence 47899999999999999988 55689999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcccccccccccC
Q psy10809 85 LQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ 136 (136)
Q Consensus 85 l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~q 136 (136)
...+.+.+.+....|...+.+.| +|.++++.+.+. +.|+.|+|+||++
T Consensus 706 ~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~-e~LV~p~rE~ir~ 753 (1036)
T KOG3531|consen 706 CKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI-ENLVHPGREFIRS 753 (1036)
T ss_pred HhhcccccccccccccccchhHH---HHHHHHHhhhcc-ccccCcchhhhhc
Confidence 99999999999999988887777 899999999654 5689999999985
No 16
>KOG2070|consensus
Probab=99.26 E-value=1.6e-11 Score=94.08 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=89.9
Q ss_pred Cchhh-hHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 3 LPMLG-IYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 3 ~~~~~-~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
+|.++ +|..||.|+|.|..+|++ ++.++..|++....... +-+-|..=|.+|..|+-||+-||++|-++.+..|||
T Consensus 184 ap~mkt~~~aYcanHP~AV~VL~k--~~dELek~me~Qgassp-g~lvLttgLSkPfrrldkY~~lLQELERhme~~HpD 260 (661)
T KOG2070|consen 184 APQMKTLYLAYCANHPSAVNVLTK--HSDELEKFMETQGASSP-GILVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPD 260 (661)
T ss_pred hHHHHHHHHHHHhcCchhhhHHHH--hHHHHHHHHHhcCCCCC-CeEEEecccchHHHHHHHHHHHHHHHHHhccccCCc
Confidence 45554 999999999999999976 67788888887654433 345567778999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNL 113 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~ 113 (136)
+.++++++...+++...|.+-.+..|-..+++
T Consensus 261 rgD~qrs~avfk~~~~~Cq~lRkqKEleLqiL 292 (661)
T KOG2070|consen 261 RGDIQRSMAVFKNLSAQCQELRKQKELELQIL 292 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99999999999999999987666665544443
No 17
>KOG0689|consensus
Probab=99.16 E-value=2.1e-11 Score=93.65 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=74.9
Q ss_pred hHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHHHHH
Q psy10809 8 IYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQN 87 (136)
Q Consensus 8 ~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~l~~ 87 (136)
.|..||.|.+.+...+. .-.+..|++.++.... .++++.++|++||||+++|++||+++++.+.....|...+.+
T Consensus 151 ~y~~y~q~kp~s~~~~~----~~~~~~~f~~~~~~~~-~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~ 225 (448)
T KOG0689|consen 151 LYVTYCQNKPKSDYLLA----EYDNEAFFQEYQTQLG-HKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCK 225 (448)
T ss_pred hhhhhhcCCCCCcccce----ecccchhhHHHhhhcc-cccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 78999999888843332 2223456666655444 688999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHhHHH
Q psy10809 88 ARQQLEDLSRQMHDEV 103 (136)
Q Consensus 88 a~~~i~~~~~~in~~~ 103 (136)
|.+.|..+.+++|+.+
T Consensus 226 a~e~m~~~~~~~~d~~ 241 (448)
T KOG0689|consen 226 AEEVMRFVLKRCNDMM 241 (448)
T ss_pred HHHHHHHHHHHhHhhh
Confidence 9999999999988765
No 18
>KOG4240|consensus
Probab=99.08 E-value=1.3e-10 Score=95.82 Aligned_cols=96 Identities=18% Similarity=0.316 Sum_probs=77.0
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|.++|.+|..||.|-+.+.+++.....-+ |+.+|+.... ..++++++|++||||+++|.++|++++++....
T Consensus 716 ~~d~fqly~~Yc~nke~S~ql~~~~a~~~----ff~e~qr~~~-l~l~~~S~l~kpvqritkYqlllkell~~c~e~--- 787 (1025)
T KOG4240|consen 716 RADDFQLYAKYCQNKELSNQLIRLHAGCS----FFQEIQRRHG-LELSISSYLIKPVQRITKYQLLLKELLKCCCEG--- 787 (1025)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHhccccc----ccHHHHHHhh-hhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhhc---
Confidence 57889999999999999999997654433 3344544433 355999999999999999999999999965533
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHh
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSE 105 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~ 105 (136)
-..+.+|++.|-.+...+|+.+.-
T Consensus 788 ~~~lkd~l~~ml~v~k~~nd~mh~ 811 (1025)
T KOG4240|consen 788 TGDLKDALEVMLSVPKKVNDSMHL 811 (1025)
T ss_pred hHHHHHHHHHHHhhhhhcccccCH
Confidence 446789999999999999998754
No 19
>KOG4269|consensus
Probab=96.77 E-value=0.0027 Score=52.93 Aligned_cols=107 Identities=21% Similarity=0.391 Sum_probs=82.5
Q ss_pred CchhhhHHHHHhc--HHHHHHHHHHHh-cChhHHHHHHHHHcCc------CCCCCChhHHhhchhccchhhHHHHHHHHh
Q psy10809 3 LPMLGIYQEYVRN--HHYSLQVLTECK-QQPEFVQLLKRLEMKP------ACQGRSLEMFLTFPMHQIPRYIVTLHELLA 73 (136)
Q Consensus 3 ~~~~~~Y~~Y~~~--~~~~~~~l~~~~-~~~~f~~~~~~~~~~~------~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k 73 (136)
...+..|..|+.| |..++..-..|. .++.|...-.+..... .....+..-.|-+|+-|.++..+-|.+++|
T Consensus 419 ~S~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~~~~ss~~s~~~~lk 498 (1112)
T KOG4269|consen 419 ASQLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLYRPIDRVTSSTLSLHDLLK 498 (1112)
T ss_pred hhhcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhccchhhhhHHHHHHHHHhC
Confidence 3456788899998 777776666654 5888865544432111 122346778899999999999999999999
Q ss_pred cCCCCCchhH----------HHHHHHHHHHHHHHHHhHHHHhHHhH
Q psy10809 74 HTPHDHVERK----------SLQNARQQLEDLSRQMHDEVSETENL 109 (136)
Q Consensus 74 ~t~~~~~d~~----------~l~~a~~~i~~~~~~in~~~~~~e~~ 109 (136)
++|-.|||+. .+++|++....++..||+.+...+..
T Consensus 499 ~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~r~~ 544 (1112)
T KOG4269|consen 499 HPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPRRLL 544 (1112)
T ss_pred CCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 9999999999 89999999999999999887664333
No 20
>KOG3524|consensus
Probab=96.64 E-value=0.0027 Score=51.68 Aligned_cols=109 Identities=3% Similarity=-0.076 Sum_probs=91.3
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
++.||+.|-.++..++.....+-. ++.++.+.+|.++-..+..++....-..++.|+|++++ ....++.+++...-+
T Consensus 472 yvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k--~s~N~dk~~leea~k 549 (850)
T KOG3524|consen 472 YVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAK 549 (850)
T ss_pred hhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhh
Confidence 356777888888877777777776 56688899998888888888888888899999999999 888889999998999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHH
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKN 112 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l 112 (136)
+...+..++...+.....+++-.+..+..+..
T Consensus 550 aikev~khInedKrkte~~~~ifdkf~diegc 581 (850)
T KOG3524|consen 550 AIKEVLKHINEDKRKTENFISIFDKFTDIEGC 581 (850)
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999998877766555443
No 21
>PHA03188 UL14 tegument protein; Provisional
Probab=75.19 E-value=13 Score=25.95 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=41.3
Q ss_pred CCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 76 PHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 76 ~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
.+++|.+- .+..|-+.-.++..++-...+-..-.+|+..++.+|.++... ++..||.|++
T Consensus 41 d~~dP~FV~AFTsAK~A~~dl~rqLrs~aRve~veQK~r~Iq~rVeeQ~a~r~iL~~nRRfL~ 103 (199)
T PHA03188 41 STQDPAFVHAFTAAKDACADLNNNIRSAARIAAVEQKIADIQEKVEEQTSIQKILNANRRYIA 103 (199)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 34666654 566666666667777766666677788888888888665432 5688888874
No 22
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=66.60 E-value=19 Score=23.52 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCC-CCCchhHHHHHHHHHHHHH
Q psy10809 65 IVTLHELLAHTP-HDHVERKSLQNARQQLEDL 95 (136)
Q Consensus 65 ~LLL~~l~k~t~-~~~~d~~~l~~a~~~i~~~ 95 (136)
.|.+..|..+.| .+||||....+.+...+.-
T Consensus 84 ~L~~~~LA~f~P~~e~p~y~~~~~e~~~Yr~~ 115 (131)
T PF09779_consen 84 HLKINQLASFLPDPEDPEYANYEEELPEYRRS 115 (131)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHH
Confidence 467788888888 6888998777766665543
No 23
>PHA03185 UL14 tegument protein; Provisional
Probab=63.99 E-value=28 Score=24.54 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=42.2
Q ss_pred CCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 76 PHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 76 ~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
..++|.+- .+..|.++-.++..++-..++-....+|...|+.+|..+... ++..+|.|+.
T Consensus 37 ~~~DP~FV~AFTsAK~A~~dl~aqLrS~aRve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~ 99 (214)
T PHA03185 37 GTQDPRFVGAFMAAKAAHRELEARLKSRARLEMLRQHAACVKIRVEEQAERRDFLIAHRRYLD 99 (214)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666654 566666666677777777777777888888888888655432 5688888874
No 24
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=63.43 E-value=5.3 Score=28.87 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=18.6
Q ss_pred hccchhhHHHHHHHHhcCCCCCch
Q psy10809 58 MHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 58 vQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
...|..|.+-|.+|.+++| -|.|
T Consensus 138 ~~~L~~~gi~~~dL~~~sP-kh~d 160 (237)
T PRK08311 138 KKELKEFGITFEDLVKESP-KHRD 160 (237)
T ss_pred HHHHHHcCCcHHHHhhcCC-CCHH
Confidence 3567788888999999988 7776
No 25
>PF03580 Herpes_UL14: Herpesvirus UL14-like protein; InterPro: IPR005207 This is a family of Herpesvirus proteins including UL14. UL14 protein is a minor component of the virion tegument [] and is expressed late in infection. UL14 protein can influence the intracellular localization patterns of a number of proteins belonging to the capsid or the DNA encapsidation machinery [].
Probab=62.82 E-value=34 Score=23.00 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 75 TPHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 75 t~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
.++++|.+- .+..|-+.=..+-..+-..++-....++...++.+|.++... ++..||.|++
T Consensus 30 v~~~dP~Fv~aFtsAK~a~~~~~~~lrs~aRle~vrqk~~~I~~rVe~Q~a~r~~L~~~RRyL~ 93 (149)
T PF03580_consen 30 VDTDDPAFVHAFTSAKEAHRDLERQLRSNARLESVRQKARAIQARVEEQAARRDFLDANRRYLS 93 (149)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 345666654 455555555556666666666677778888888888665432 5688888874
No 26
>PHA03187 UL14 tegument protein; Provisional
Probab=61.45 E-value=33 Score=25.60 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 76 PHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 76 ~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
..++|.+- .+..|-+.=.++-.++....+-..-.+|...|+.+|.++... ++..||.|+.
T Consensus 37 d~~DPaFV~AFTSAKeA~~dl~rqLRS~aRveaVeQKar~Iq~rVEeQ~a~r~iL~~nRRfL~ 99 (322)
T PHA03187 37 DKRSPAFVRAFTSAKEASLDLDRYMQAHSRVGRVEQNARALAQRVEAQAAVGEILDRHRRFLH 99 (322)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 34666654 556666666666666666667777788888888888665432 5688998874
No 27
>PF15036 IL34: Interleukin 34; PDB: 4DKF_A 4DKE_A 4DKC_A 4DKD_A 4EXN_A 4EXP_A.
Probab=59.01 E-value=45 Score=22.62 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHh-HHHHhHHhHHHHHHHHHHHh
Q psy10809 68 LHELLAHTPHDHVERKSLQNARQQLEDLSRQMH-DEVSETENLRKNLAVERLIV 120 (136)
Q Consensus 68 L~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in-~~~~~~e~~~~l~~~~~~i~ 120 (136)
++.+..-.+++||-+..+++....+.++-...- -...+.|...++.++.+.+.
T Consensus 80 ~e~Vq~VLle~HPSwkYl~Ev~~Ll~~v~~~~~~~~~~dvE~~p~ve~vlsll~ 133 (169)
T PF15036_consen 80 TESVQEVLLEGHPSWKYLQEVQTLLLDVQQGLKEYRQSDVEVSPRVESVLSLLN 133 (169)
T ss_dssp HHHHHTTS-TTSTTHHHHHHHHHHHHHHHHTTT-----T----HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcccccccccccCccHHHHHHHHh
Confidence 456666788999999998888777777655443 12335666677777776653
No 28
>PHA03190 UL14 tegument protein; Provisional
Probab=58.50 E-value=44 Score=23.39 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 76 PHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 76 ~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
+.+||.+- .+..|-+.=...-..+...++-....+++..|+.+|.++... ++..||.|++
T Consensus 37 ~~~dP~Fv~aFTsAKeA~~~~~~~lrS~aRle~vrQk~~~Iq~rVE~Q~a~r~~L~~nRRyL~ 99 (196)
T PHA03190 37 PPMHPAFRHAFAKAREHEAAAEIAAQSDKRLSSVRCHIARIKAATEGQRALALELDGYRRYLR 99 (196)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 44666544 333333333333333333445566677788888888665432 5688888875
No 29
>PF15601 Imm42: Immunity protein 42
Probab=54.52 E-value=33 Score=22.63 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q psy10809 62 PRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQM 99 (136)
Q Consensus 62 ~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~i 99 (136)
.+||+|+.++.. +.-.++.+..|++.|+++-...
T Consensus 36 skfP~Lm~~LY~----g~L~~~~~~~A~~eL~~I~~~l 69 (134)
T PF15601_consen 36 SKFPLLMNELYR----GYLRYEELEKALKELEEIRKEL 69 (134)
T ss_pred CcchHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999943 3446778888888888776554
No 30
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=51.95 E-value=8.3 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=19.2
Q ss_pred hhccchhhHHHHHHHHhcCCCCCchhH
Q psy10809 57 PMHQIPRYIVTLHELLAHTPHDHVERK 83 (136)
Q Consensus 57 PvQRl~rY~LLL~~l~k~t~~~~~d~~ 83 (136)
=...|..|.+-|.+|.+++| -|.|-.
T Consensus 126 ~~~~L~~~gi~~~dLv~~sP-kh~d~r 151 (218)
T TIGR02895 126 YKKLLKQFGIEFVELVKVSP-KHRDTR 151 (218)
T ss_pred HHHHHHHcCCcHHHHhhcCC-CCHHHH
Confidence 34567788888999999988 666543
No 31
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=48.42 E-value=54 Score=19.06 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q psy10809 67 TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVS 104 (136)
Q Consensus 67 LL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~ 104 (136)
||..|...++ .+|+ ..++..|++++..||..+-
T Consensus 12 lL~~Ls~~~~--d~e~---~atls~i~eli~~IN~kIl 44 (71)
T PF06015_consen 12 LLTNLSNNKD--DSEF---AATLSAIKELISQINLKIL 44 (71)
T ss_pred HHHHHhcCCC--cHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5555555543 4455 5778888999999997553
No 32
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.02 E-value=67 Score=20.07 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHH
Q psy10809 67 TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKN 112 (136)
Q Consensus 67 LL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l 112 (136)
-++.-+++.| ++.|...|...+..++.-+..++..++-.+....+
T Consensus 53 ~lE~~l~~LP-t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 53 ALETKLEHLP-TRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3566677777 88899999999999998888888777655444444
No 33
>PF15469 Sec5: Exocyst complex component Sec5
Probab=46.86 E-value=57 Score=22.20 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=41.2
Q ss_pred hHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 8 IYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 8 ~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
-|...+..|..|...+.... +.+.|.....+++.....-+-.|..-|..|-.-...+.-++..|+.--+.+.|
T Consensus 101 dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dP 174 (182)
T PF15469_consen 101 DYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDP 174 (182)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCH
Confidence 58888888889988888755 67778887777765432212233333333333333344444444444333333
No 34
>PHA03191 UL14 tegument protein; Provisional
Probab=45.26 E-value=82 Score=22.65 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=40.3
Q ss_pred CCCCCchhH-HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc--cccccccccc
Q psy10809 75 TPHDHVERK-SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI--LLDVNQVFVR 135 (136)
Q Consensus 75 t~~~~~d~~-~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~--l~~~~R~~i~ 135 (136)
.+.++|.+- .+..|-++-..+-.++-..++-..-.++...|+.+|..+... ++..+|.|++
T Consensus 37 V~~~DP~FV~aFTSAK~A~~dl~~qLRSnaRve~VeQkar~Iq~rVEeQ~a~r~iLd~hRRfL~ 100 (238)
T PHA03191 37 VETDDPEFIETFTSARNAHSDYKAQLRSNMRLENTERKLRIIQRHIDEQVDRRLILDTNRRFLN 100 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345666654 455566666666666666667677778888888888554332 5688888874
No 35
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=44.38 E-value=16 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.9
Q ss_pred hhccchhhHHHHHHHHhc
Q psy10809 57 PMHQIPRYIVTLHELLAH 74 (136)
Q Consensus 57 PvQRl~rY~LLL~~l~k~ 74 (136)
-++|+|.|--.|+.+...
T Consensus 7 ti~RL~~Y~r~L~~l~~~ 24 (50)
T PF06971_consen 7 TIRRLPLYLRYLEQLKEE 24 (50)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 478999999999999885
No 36
>PHA01756 hypothetical protein
Probab=41.25 E-value=10 Score=26.72 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.4
Q ss_pred CChhHHhhchhccchhh
Q psy10809 48 RSLEMFLTFPMHQIPRY 64 (136)
Q Consensus 48 l~l~~~L~~PvQRl~rY 64 (136)
-+++++|-+|.||++.-
T Consensus 6 aSISsLLA~PFQRLTSs 22 (268)
T PHA01756 6 TSISSLLASPFQRLTSS 22 (268)
T ss_pred hhHHHHHhhHHHHHHHH
Confidence 36899999999999863
No 37
>PHA03044 IMV membrane protein; Provisional
Probab=38.65 E-value=82 Score=18.39 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q psy10809 67 TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVS 104 (136)
Q Consensus 67 LL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~ 104 (136)
||..|...+. .+|+ ..++..|++++..||..+-
T Consensus 14 lLt~Lsn~~~--d~ef---aAtls~ikElis~IN~kil 46 (74)
T PHA03044 14 LLTNLSNNSD--DSEF---SATLSTIKEIISQINLKVL 46 (74)
T ss_pred HHHHHHcCCC--ChhH---HHHHHHHHHHHHHHHHHHH
Confidence 4555555432 4444 5788899999999997553
No 38
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=38.36 E-value=75 Score=18.90 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHH
Q psy10809 67 TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAV 115 (136)
Q Consensus 67 LL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~ 115 (136)
-|+|.+++.|..+ +.+...++....-......+....+..+++.-+
T Consensus 6 ~LEDsLr~~~~~a---~~~i~~L~aa~~rL~~al~~P~sp~qYqq~t~l 51 (80)
T PRK15366 6 RLEDLLLHSREEA---KGIILQLRAARKQLEENNGKLQDPQQYQQNTLL 51 (80)
T ss_pred HHHHHHhcCHHHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3667777766544 444444444444444444444445555555433
No 39
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=37.35 E-value=81 Score=17.92 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=17.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHH
Q psy10809 77 HDHVERKSLQNARQQLEDLSRQMHDEVS 104 (136)
Q Consensus 77 ~~~~d~~~l~~a~~~i~~~~~~in~~~~ 104 (136)
+.|++|..-...-++-..|+..++....
T Consensus 14 ~~~~~y~~~~~r~~aw~~Ia~~l~~~~~ 41 (85)
T PF10545_consen 14 PSHPDYKNRQLREEAWQEIARELGKEFS 41 (85)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHccchh
Confidence 4667777666666666677777764333
No 40
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.58 E-value=1e+02 Score=18.03 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHH
Q psy10809 66 VTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAV 115 (136)
Q Consensus 66 LLL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~ 115 (136)
.||.+|++++. .+.+|+..+......||..-...|-..++++-
T Consensus 11 ~LLsRIi~Nve-------kLNEsv~~lN~~l~eIn~~N~~le~~~qm~en 53 (72)
T PF08650_consen 11 NLLSRIIGNVE-------KLNESVAELNQELEEINRANKNLEIVAQMWEN 53 (72)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 57777777643 67888888888889998877777777777644
No 41
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=32.50 E-value=1.3e+02 Score=18.74 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHH----HHHHhHHHHhHHhHHHHHHHHHHH
Q psy10809 68 LHELLAHTPHDHVERKSLQNARQQLEDL----SRQMHDEVSETENLRKNLAVERLI 119 (136)
Q Consensus 68 L~~l~k~t~~~~~d~~~l~~a~~~i~~~----~~~in~~~~~~e~~~~l~~~~~~i 119 (136)
|..-++..|+++++|..+...++..... ........+..--..+|..|..+|
T Consensus 41 L~~~l~~l~~~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I 96 (101)
T PF07303_consen 41 LDSELKRLPPGSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLI 96 (101)
T ss_dssp HHHHHHHS-TTSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667888888777333333333 445555555555566666666655
No 42
>KOG0931|consensus
Probab=32.46 E-value=1.6e+02 Score=23.90 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCC--C--CchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCC-ccccccccccc
Q psy10809 66 VTLHELLAHTPH--D--HVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCD-ILLDVNQVFVR 135 (136)
Q Consensus 66 LLL~~l~k~t~~--~--~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~-~l~~~~R~~i~ 135 (136)
+.|.+.+|+.-. + .-+++.|..-++.|+.---..| .+...++..+++.|+|..+ .|..|+|.++.
T Consensus 350 M~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktn-----dDHVsqVqkVer~IVGkk~~vLs~phRRLVC 419 (627)
T KOG0931|consen 350 MKLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTN-----DDHVSQVQKVERAIVGKKPPVLSLPHRRLVC 419 (627)
T ss_pred hhHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccC-----cchHHHHHHHHHHHhcCCCcccccCCceEEE
Confidence 457777777541 2 2345556666666655333333 3566677888999998766 68889999873
No 43
>KOG3522|consensus
Probab=30.89 E-value=95 Score=26.96 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEV 103 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~ 103 (136)
+..+..-.+.++.+.+.|++..
T Consensus 167 ~kr~a~~~~e~q~~~rei~~r~ 188 (925)
T KOG3522|consen 167 HKRFADEINELQAALREIEVRS 188 (925)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444433
No 44
>PF12311 DUF3632: Protein of unknown function (DUF3632); InterPro: IPR022085 This domain family is found in eukaryotes, and is approximately 170 amino acids in length. There is a conserved ALE sequence motif.
Probab=30.78 E-value=69 Score=21.54 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q psy10809 68 LHELLAHTPHDHVERKSLQNARQQLEDLSRQ 98 (136)
Q Consensus 68 L~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~ 98 (136)
+-++.+.+|.+|+.++.|...+..++++-..
T Consensus 4 l~~~A~~~p~~~~~qdrLv~ll~~l~~~p~~ 34 (184)
T PF12311_consen 4 LIEVAKQIPYDHPAQDRLVDLLQALRKLPSH 34 (184)
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHcCCCC
Confidence 4456677777777777777766666665444
No 45
>PF15157 IQ-like: IQ-like
Probab=29.79 E-value=33 Score=20.84 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCc
Q psy10809 87 NARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI 125 (136)
Q Consensus 87 ~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~ 125 (136)
+-++.++.-..+||+.+-..|+.+--+..+..| .+++.
T Consensus 4 EElkRLQ~~leqvndgKy~~enhQLAMD~ENNI-eky~l 41 (97)
T PF15157_consen 4 EELKRLQNPLEQVNDGKYSLENHQLAMDAENNI-EKYPL 41 (97)
T ss_pred HHHHHhhchHHhccccceeeehhHHhhhhhhhH-Hhccc
Confidence 445667777888898888888888888888887 44443
No 46
>KOG4025|consensus
Probab=29.62 E-value=1.9e+02 Score=20.03 Aligned_cols=54 Identities=9% Similarity=0.299 Sum_probs=36.8
Q ss_pred ChhHHhh----chhccchhhHHHHHHHHhcCCCCCchhHHHHHHHH----HHHHHHHHHhHH
Q psy10809 49 SLEMFLT----FPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQ----QLEDLSRQMHDE 102 (136)
Q Consensus 49 ~l~~~L~----~PvQRl~rY~LLL~~l~k~t~~~~~d~~~l~~a~~----~i~~~~~~in~~ 102 (136)
++..|++ .|.|-+.+-..-|+.++...|.+-.|+....+.++ +|+++.+-||..
T Consensus 82 d~ney~v~r~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v 143 (207)
T KOG4025|consen 82 DTNEYIVSRYEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAV 143 (207)
T ss_pred chhhHhhcCCCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665 47788888888889999988877777765544443 445555556543
No 47
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=29.30 E-value=1e+02 Score=19.25 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCC
Q psy10809 10 QEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPAC 45 (136)
Q Consensus 10 ~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~ 45 (136)
.+|..+.+....+++.+.....+..|+......|+.
T Consensus 46 ~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t~~rPRl 81 (99)
T PF11267_consen 46 EEYLEHLDAVAEYLNAWGQADQVRAFLEETRERPRL 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-----BT
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhCCCCCCC
Confidence 578888899999998888888899999987777764
No 48
>KOG1300|consensus
Probab=29.26 E-value=3.4e+02 Score=22.67 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=34.6
Q ss_pred CChhHHhhchhccchhhHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCC
Q psy10809 48 RSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGC 123 (136)
Q Consensus 48 l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~ 123 (136)
.+..++ .+-|+.+|.|.-.+..+..| -.++..||...+. ...++.+++..+..|.
T Consensus 321 ~S~kDL-~~mv~~lpqy~k~~~Kls~H------------------l~LA~eC~~~~~~--~L~~l~~iEQDLa~G~ 375 (593)
T KOG1300|consen 321 TSTKDL-SKMVKKLPQYQKELDKLSLH------------------LELAEECMKKFQE--GLEKLGAIEQDLATGT 375 (593)
T ss_pred cchHHH-HHHHHhchHHHHHHHHHHHH------------------HHHHHHHHHHHHH--HHHHHHHHHHHHhccC
Confidence 444443 34566666666555555444 3467777765544 7888999988887653
No 49
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=27.02 E-value=1.3e+02 Score=21.77 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.2
Q ss_pred hchhccchhhHHHHHHHHhcCC
Q psy10809 55 TFPMHQIPRYIVTLHELLAHTP 76 (136)
Q Consensus 55 ~~PvQRl~rY~LLL~~l~k~t~ 76 (136)
|.+...-+.|+.+|+.|++...
T Consensus 154 l~~~~ks~~y~~fl~~l~r~l~ 175 (245)
T PF08597_consen 154 LTSFEKSPHYPSFLKELIRDLC 175 (245)
T ss_dssp HGGGTTSTTHHHHHHHHHHHHH
T ss_pred HHcccChHHHHHHHHHHHHHHH
Confidence 5666788899999999999755
No 50
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=27.00 E-value=2.7e+02 Score=21.03 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh--HHhHHHHHHHHHHH
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSE--TENLRKNLAVERLI 119 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~--~e~~~~l~~~~~~i 119 (136)
.+.+|++.+..++..|-+.+.. .++..++..++.||
T Consensus 22 qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri 59 (297)
T PF11945_consen 22 QIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRI 59 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555432 56777777777777
No 51
>PHA02674 ORF107 virion morphogenesis; Provisional
Probab=25.57 E-value=1.3e+02 Score=16.72 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhHHH
Q psy10809 67 TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEV 103 (136)
Q Consensus 67 LL~~l~k~t~~~~~d~~~l~~a~~~i~~~~~~in~~~ 103 (136)
||..|...+ ..| ...++..+++++..||..+
T Consensus 13 lLt~Ls~~~---d~d---~aAtlaaIkelis~IN~kv 43 (60)
T PHA02674 13 MLTRIAQIC---GGD---AAAAAAAIKMLMDLVNERI 43 (60)
T ss_pred HHHHHHcCC---Cch---HHHHHHHHHHHHHHHHHHH
Confidence 555565554 233 4577888889999999754
No 52
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=23.80 E-value=1.3e+02 Score=15.91 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHhcCC
Q psy10809 62 PRYIVTLHELLAHTP 76 (136)
Q Consensus 62 ~rY~LLL~~l~k~t~ 76 (136)
|.|+.||...+.|--
T Consensus 11 P~Y~~Ll~Ayi~C~K 25 (45)
T PF03790_consen 11 PLYPRLLAAYIDCQK 25 (45)
T ss_pred CCcHHHHHHHHHHHh
Confidence 456666666666543
No 53
>KOG4465|consensus
Probab=23.04 E-value=1.1e+02 Score=24.07 Aligned_cols=41 Identities=27% Similarity=0.588 Sum_probs=26.1
Q ss_pred CchhhhHHHHHhc-HHHHHHHHHH-HhcC---hhHHHHHHHHHcCc
Q psy10809 3 LPMLGIYQEYVRN-HHYSLQVLTE-CKQQ---PEFVQLLKRLEMKP 43 (136)
Q Consensus 3 ~~~~~~Y~~Y~~~-~~~~~~~l~~-~~~~---~~f~~~~~~~~~~~ 43 (136)
+|+++.|+.|... ++.|...+-+ |+-- =+|-+|.+.+..+.
T Consensus 113 cpmlnaysd~iralhdaa~d~ipevcr~pthlfefid~~k~i~es~ 158 (598)
T KOG4465|consen 113 CPMLNAYSDIIRALHDAAFDAIPEVCRIPTHLFEFIDFCKDIKESM 158 (598)
T ss_pred CcccchhHHHHHHHHHHHHHhhHHHhcCchHHHHHHHHHHHHHHHH
Confidence 7999999999976 4566666666 6532 23455555554433
No 54
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.01 E-value=3.2e+02 Score=21.31 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHH
Q psy10809 77 HDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNL 113 (136)
Q Consensus 77 ~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~ 113 (136)
.++.....+..|-..|.++...|++....++..+.+.
T Consensus 51 ~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V 87 (383)
T PF04100_consen 51 SGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMV 87 (383)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888888888888888877777776653
No 55
>PF14355 Abi_C: Abortive infection C-terminus
Probab=22.65 E-value=1.7e+02 Score=16.94 Aligned_cols=27 Identities=11% Similarity=0.367 Sum_probs=15.2
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhH
Q psy10809 74 HTPHDHVERKSLQNARQQLEDLSRQMHD 101 (136)
Q Consensus 74 ~t~~~~~d~~~l~~a~~~i~~~~~~in~ 101 (136)
-.+.++.+ +.+++.+..+..++..+++
T Consensus 14 ~~~~~~~~-~~ik~il~~l~~i~~~i~~ 40 (80)
T PF14355_consen 14 LSPDSQSD-KDIKKILSSLNSIVSGINE 40 (80)
T ss_pred cCCcccch-HHHHHHHHHHHHHHHHHHH
Confidence 33333333 5566666666666666664
No 56
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=22.33 E-value=98 Score=21.07 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHHHhcHHHHHHHHHH-----HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCC
Q psy10809 9 YQEYVRNHHYSLQVLTE-----CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTP 76 (136)
Q Consensus 9 Y~~Y~~~~~~~~~~l~~-----~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~ 76 (136)
|+.+-.|+.-++.-+.+ ...+.+|+.+.+.++.....++.++.++- -.+..-|++++.++|..+
T Consensus 78 Ys~vqaNFqcs~~DLsdii~i~f~~deel~~~~e~i~~~v~~Gn~Sl~~ls----r~l~~sp~firglAKRs~ 146 (160)
T PF09824_consen 78 YSKVQANFQCSMEDLSDIIYIAFMSDEELRDYVEKIEKEVEAGNTSLSDLS----RKLGISPVFIRGLAKRSP 146 (160)
T ss_pred HhheeeeeEeeHHHHHHHHheeecCHHHHHHHHHHHHHHHHcCCCcHHHHH----HHhCCCHHHHHHHHHhcc
Confidence 33333444444444444 24688999999999877666676766653 335667889999999876
No 57
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=21.36 E-value=3.7e+02 Score=20.41 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHH
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSETENLRKNLAVE 116 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~ 116 (136)
.+.-|++.++.+...|| .+++.|-..+|.++-
T Consensus 144 ri~Vaiq~v~siS~~I~-kLRDeEL~PQL~eLi 175 (312)
T PF04782_consen 144 RIRVAIQSVDSISKRIE-KLRDEELYPQLVELI 175 (312)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 46677788888888887 677777777776553
No 58
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=20.85 E-value=5.5e+02 Score=22.13 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCchhhhHHHHHhc----HHHHHHHHHHHhc---ChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhc
Q psy10809 2 LLPMLGIYQEYVRN----HHYSLQVLTECKQ---QPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAH 74 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~----~~~~~~~l~~~~~---~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~ 74 (136)
+..||..+.+||.| -+.-..+++.+++ .+.|.++.+. .++|..-+.-|=+ +|. .|+-+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~-vLk~il~~ 83 (718)
T PRK06330 16 PSKFFSLWEEYCFNDVVRGDELVQLLEKIKSSSLAPLFGKIAET--------VLPLWEQIPEGEE---KDK-VLQLVLDL 83 (718)
T ss_pred hHHHHHHHHHHhccccccHHHHHHHHHHHhcccchhHHHHHHHH--------hhhHHHhCCChhh---HHH-HHHHHHhc
Confidence 45789999999998 4455556665553 5667777654 3444444443322 232 45666666
Q ss_pred CCCCCchh
Q psy10809 75 TPHDHVER 82 (136)
Q Consensus 75 t~~~~~d~ 82 (136)
-..+|+-.
T Consensus 84 ~~~n~~~~ 91 (718)
T PRK06330 84 QTTNSKNL 91 (718)
T ss_pred cccCcHhH
Confidence 55455433
No 59
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=20.34 E-value=2.4e+02 Score=17.77 Aligned_cols=27 Identities=7% Similarity=0.264 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHH
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETE 107 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e 107 (136)
+...|..|+..++..+...++.....+
T Consensus 3 ~l~~L~~ai~~~~~aa~~f~~~~~~~~ 29 (125)
T PF04253_consen 3 DLDPLKKAISKFKKAAKEFQEWIKSWD 29 (125)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777776665554
Done!