Query psy10809
Match_columns 136
No_of_seqs 151 out of 1039
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:01:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfk_A Collybistin II; DH doma 100.0 3.1E-32 1.1E-36 207.0 14.0 135 2-136 125-260 (402)
2 1xcg_A PDZ-rhogef, RHO guanine 100.0 2.9E-32 9.9E-37 204.8 13.4 133 4-136 111-256 (368)
3 3mpx_A FYVE, rhogef and PH dom 100.0 6.1E-32 2.1E-36 206.8 13.2 134 2-136 113-247 (434)
4 2z0q_A XPLN, RHO guanine nucle 100.0 6.7E-33 2.3E-37 206.8 6.8 135 2-136 101-235 (346)
5 2pz1_A RHO guanine nucleotide 100.0 1.7E-31 6E-36 206.0 12.4 135 2-136 202-337 (466)
6 3jv3_A Intersectin-1; SH3 doma 100.0 3.1E-31 1.1E-35 192.8 10.8 116 2-117 167-283 (283)
7 3p6a_A RHO guanine nucleotide 100.0 9.5E-31 3.2E-35 197.0 13.4 131 5-136 119-262 (377)
8 3t06_A PDZ-rhogef, RHO guanine 100.0 8.8E-31 3E-35 199.6 13.4 132 5-136 154-298 (418)
9 2vrw_B P95VAV, VAV1, proto-onc 100.0 5.4E-31 1.8E-35 200.3 11.6 132 2-135 104-236 (406)
10 1txd_A RHO guanine nucleotide 100.0 5.4E-31 1.8E-35 199.0 11.4 132 4-136 116-260 (385)
11 3odw_A RHO guanine nucleotide 100.0 2.3E-29 7.7E-34 197.2 13.0 131 5-136 272-415 (536)
12 3ky9_A Proto-oncogene VAV; cal 100.0 1.2E-29 4.2E-34 200.6 10.5 132 2-135 276-408 (587)
13 1dbh_A Protein (human SOS 1); 100.0 1.8E-30 6.1E-35 194.2 3.6 131 5-136 94-250 (354)
14 3jzy_A Intersectin 2; C2 domai 100.0 1.9E-30 6.6E-35 201.6 0.0 135 2-136 112-256 (510)
15 1by1_A Protein (PIX); RHO-GTPa 100.0 9.2E-29 3.1E-33 173.2 8.5 105 2-109 95-200 (209)
16 1foe_A T-lymphoma invasion and 100.0 9.5E-29 3.3E-33 186.3 8.4 112 2-114 106-217 (377)
17 1kz7_A Guanine nucleotide exch 99.9 4.3E-25 1.5E-29 165.2 10.6 98 2-105 97-194 (353)
18 3ksy_A SOS-1, SON of sevenless 99.9 3E-26 1E-30 190.6 2.3 131 5-136 291-447 (1049)
19 2rgn_B RHOA/RAC/CDC42 exchange 99.9 8.7E-25 3E-29 163.6 7.9 97 2-104 94-190 (354)
20 1nty_A Triple functional domai 99.9 3.9E-23 1.3E-27 152.1 9.4 94 2-104 93-186 (311)
21 2lg1_A A-kinase anchor protein 98.4 1.9E-09 6.6E-14 73.8 -5.4 49 74-122 2-50 (185)
22 4gou_A EHRGS-rhogef; RGS domai 72.5 24 0.00082 25.4 10.0 95 4-101 266-372 (518)
23 2ibf_B Invasin IPAA, 70 kDa an 28.5 34 0.0012 14.6 1.4 22 79-100 2-23 (26)
24 2ljw_A ALR2454 protein; novel 25.1 70 0.0024 19.5 3.0 36 10-45 48-83 (110)
25 2yqr_A KIAA0907 protein; struc 23.9 1.3E+02 0.0045 18.4 4.4 25 79-103 80-104 (119)
26 2asw_A Hypothetical protein AF 22.4 74 0.0025 15.0 3.5 12 53-64 4-15 (56)
No 1
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=3.1e-32 Score=207.02 Aligned_cols=135 Identities=20% Similarity=0.306 Sum_probs=125.5
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
++|.|++|..||.|++.|...+.++.+++.|..|++.|+..+.+.+++|.+||++||||||||+|||++|+|+||++|||
T Consensus 125 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d 204 (402)
T 2dfk_A 125 HQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSD 204 (402)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHcChHHHHHHHHHHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcC
Confidence 57889999999999999999999988889999999999887778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC-CCcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG-CDILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~-~~~l~~~~R~~i~q 136 (136)
|..+..|++.|+.++..||+.+++.|+.+++.+++.+|.|. ...++.++|.||++
T Consensus 205 ~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~~ 260 (402)
T 2dfk_A 205 YRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYT 260 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccceEEe
Confidence 99999999999999999999999999999999999999643 23467999999874
No 2
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.98 E-value=2.9e-32 Score=204.78 Aligned_cols=133 Identities=16% Similarity=0.316 Sum_probs=122.9
Q ss_pred chhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchh
Q psy10809 4 PMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVER 82 (136)
Q Consensus 4 ~~~~~Y~~Y~~~~~~~~~~l~~~-~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~ 82 (136)
+++++|..||.|++.|...++++ ++++.|.+|++.|+..+.|++++|.+||++||||||||+|||++|+|+||++||||
T Consensus 111 ~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~ 190 (368)
T 1xcg_A 111 ELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEH 190 (368)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhChhhccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhH
Confidence 46899999999999999999985 46999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC------------CCcccccccccccC
Q psy10809 83 KSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG------------CDILLDVNQVFVRQ 136 (136)
Q Consensus 83 ~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~------------~~~l~~~~R~~i~q 136 (136)
..+..|++.|++++..||+.+++.|+.+++.+++.+|.+. ...+..++|.||++
T Consensus 191 ~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~pl~~~~~~l~~~~R~li~~ 256 (368)
T 1xcg_A 191 EKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHE 256 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGGGGCCGGGSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcccchhhhhhhcccccceEEee
Confidence 9999999999999999999999999999999999998541 12456789999874
No 3
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=6.1e-32 Score=206.80 Aligned_cols=134 Identities=18% Similarity=0.244 Sum_probs=121.7
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
|.++|++|..||.||+.|...+++ +++++.|.+|++.++..+.+++++|.+||++|||||+||+|||++|+|+||++|+
T Consensus 113 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~ 192 (434)
T 3mpx_A 113 REQGFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSA 192 (434)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSH
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCcccCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCc
Confidence 678999999999999999999998 6679999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcccccccccccC
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ 136 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~q 136 (136)
||..+..|++.|+.++..+|+.+++.|+.+++.+++.+|.+. +.++.|+|.||++
T Consensus 193 d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~-~~l~~~~r~li~~ 247 (434)
T 3mpx_A 193 EYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ-GDLLQPGREFLKE 247 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETC-CCCCCTTCCEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccccCCcceEec
Confidence 999999999999999999999999999999999999999664 5578999999874
No 4
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.97 E-value=6.7e-33 Score=206.84 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=109.5
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|+|+|++|..||.||+.|...++++++++.|.+|++.|+..+.|++++|.+||++||||+|||+|||++|+|+||++|||
T Consensus 101 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d 180 (346)
T 2z0q_A 101 WLPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPD 180 (346)
T ss_dssp HGGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHCC-------------CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTH
T ss_pred HhhHHHHHHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHhCccCCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcc
Confidence 57889999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~q 136 (136)
|..+..|++.|+.++..||+.+++.|+..++..++....+....++.++|.||++
T Consensus 181 ~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~r~li~~ 235 (346)
T 2z0q_A 181 QQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCH 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCCCHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCeEEEEe
Confidence 9999999999999999999999999998877666543222233477899999863
No 5
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.97 E-value=1.7e-31 Score=206.05 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=124.9
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|.+.|++|..||.|++.|...++++.+++.|..|++.|+..+.+.+++|.+||++|||||+||+|||++|+|+||++|+|
T Consensus 202 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d 281 (466)
T 2pz1_A 202 HQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRD 281 (466)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHHhhhhccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcC
Confidence 46789999999999999999999988889999999999887778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC-CCcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG-CDILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~-~~~l~~~~R~~i~q 136 (136)
|..|..|++.|+.++.+||+.+++.|+.+++.+++.+|.+. ...++.++|.||++
T Consensus 282 ~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li~~ 337 (466)
T 2pz1_A 282 FKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYS 337 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceeEEe
Confidence 99999999999999999999999999999999999999643 23467899999874
No 6
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.97 E-value=3.1e-31 Score=192.77 Aligned_cols=116 Identities=27% Similarity=0.547 Sum_probs=107.2
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
++++|++|..||.|++.+...+.. +++++.|..|++.++..+.|++++|.+||++||||||||+|||++|+|+||++||
T Consensus 167 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~ 246 (283)
T 3jv3_A 167 QLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHP 246 (283)
T ss_dssp HGGGGTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTST
T ss_pred HHhhchhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCc
Confidence 468899999999999999999988 5579999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHH
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVER 117 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~ 117 (136)
|+..+..|++.|+.++..||+.+++.|+.++|.++|.
T Consensus 247 d~~~l~~A~~~i~~v~~~iNe~~r~~e~~~~l~~iQs 283 (283)
T 3jv3_A 247 DHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA 283 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhC
Confidence 9999999999999999999999999999999999874
No 7
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.97 E-value=9.5e-31 Score=197.00 Aligned_cols=131 Identities=17% Similarity=0.318 Sum_probs=120.4
Q ss_pred hhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhH
Q psy10809 5 MLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERK 83 (136)
Q Consensus 5 ~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~ 83 (136)
|+++|..||.|++.|...+++ +++++.|..|++.++..+.|++++|.+||++||||++||+|||++|+|+||. |+|+.
T Consensus 119 ~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~ 197 (377)
T 3p6a_A 119 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTERE 197 (377)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHH
Confidence 558999999999999999998 5679999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhc------------CCCcccccccccccC
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVE------------GCDILLDVNQVFVRQ 136 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~------------~~~~l~~~~R~~i~q 136 (136)
.+..|++.|+.++.+||+.+++.|+..++.+++.++.+ +...+..++|.||++
T Consensus 198 ~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~~~~~~~~~~~~~~~~l~~~~r~li~e 262 (377)
T 3p6a_A 198 KVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHE 262 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCGGGSSSTTCCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchhhhhcccccccceEEEE
Confidence 99999999999999999999999999999999999954 233444588999874
No 8
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.97 E-value=8.8e-31 Score=199.64 Aligned_cols=132 Identities=16% Similarity=0.320 Sum_probs=122.1
Q ss_pred hhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhH
Q psy10809 5 MLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERK 83 (136)
Q Consensus 5 ~~~~Y~~Y~~~~~~~~~~l~~~-~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~ 83 (136)
++++|..||.|++.|...++++ ++++.|..|++.++..+.|++++|.+||++|||||+||+|||++|+|+||++|+||.
T Consensus 154 ~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~ 233 (418)
T 3t06_A 154 LQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 233 (418)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHH
T ss_pred HhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHH
Confidence 4689999999999999999985 469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC------------CCcccccccccccC
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG------------CDILLDVNQVFVRQ 136 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~------------~~~l~~~~R~~i~q 136 (136)
.+..|++.|+.++.+||+.+++.|+..++.+++.+|.+. ...+..|+|.||++
T Consensus 234 ~L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~~r~li~e 298 (418)
T 3t06_A 234 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHE 298 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCTTSSCSCTTTTTTSSCCGGGSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccchhhcccccccceeEEe
Confidence 999999999999999999999999999999999999642 23356788999874
No 9
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.97 E-value=5.4e-31 Score=200.28 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=120.9
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
|.|+|++|..||.|++.|...++++. +++.|.+|++.++..+.+++++|.+||++|||||+||+|||++|+|+| ++||
T Consensus 104 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t-~~~~ 182 (406)
T 2vrw_B 104 YKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDAT 182 (406)
T ss_dssp HTTGGGHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHHHHC-CCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhccccCCcchHHHhhhHHHHHhhHHHHHHHHHHhC-CCCh
Confidence 46889999999999999999999855 699999999999988888999999999999999999999999999999 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCccccccccccc
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVR 135 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~ 135 (136)
|+..+..|++.|++++..||+.+++.|+..++.+++.+|.+....+..+|| +|+
T Consensus 183 d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~l~~~gr-li~ 236 (406)
T 2vrw_B 183 EKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGR-PKI 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCSSCGGGGCS-EEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCc-ccc
Confidence 999999999999999999999999999999999999999654444667776 544
No 10
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.97 E-value=5.4e-31 Score=199.03 Aligned_cols=132 Identities=16% Similarity=0.289 Sum_probs=119.7
Q ss_pred chhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchh
Q psy10809 4 PMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVER 82 (136)
Q Consensus 4 ~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~ 82 (136)
+|+++|..||.||+.|...+++ +++++.|.+|++.|+..+.|++++|.+||++||||||||+|||++|+|+||++ +|+
T Consensus 116 ~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~-~d~ 194 (385)
T 1txd_A 116 KLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWP-TER 194 (385)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSH-HHH
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCC-hhH
Confidence 3569999999999999999998 45799999999999999999999999999999999999999999999999975 899
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC------CC------cccccccccccC
Q psy10809 83 KSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG------CD------ILLDVNQVFVRQ 136 (136)
Q Consensus 83 ~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~------~~------~l~~~~R~~i~q 136 (136)
..+.+|++.|+.++..||+.+++.|+..++.+++.+|.+. .+ .+..|+|.||++
T Consensus 195 ~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~p~~~~~~~l~~~~R~li~e 260 (385)
T 1txd_A 195 EKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHE 260 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC-------CHHHHTCCGGGSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhcccccccchhhhhhcccccceEEEE
Confidence 9999999999999999999999999999999999998631 11 245688999874
No 11
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.96 E-value=2.3e-29 Score=197.24 Aligned_cols=131 Identities=17% Similarity=0.322 Sum_probs=119.9
Q ss_pred hhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCchhH
Q psy10809 5 MLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERK 83 (136)
Q Consensus 5 ~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d~~ 83 (136)
|+++|..||.||+.|...+++ +++++.|..|++.++..+.|++++|.+||++|||||+||+|||++|+|+||. |+||.
T Consensus 272 f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~ 350 (536)
T 3odw_A 272 FQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTERE 350 (536)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCS-HHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHH
Confidence 458999999999999999998 5679999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC------------CCcccccccccccC
Q psy10809 84 SLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG------------CDILLDVNQVFVRQ 136 (136)
Q Consensus 84 ~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~------------~~~l~~~~R~~i~q 136 (136)
.|..|++.|+.++.+||+.+++.|+..+|.+++.+|.+. ...+..++|.||++
T Consensus 351 ~L~~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~~~~~~~~~~~~i~~~~~ldl~~R~LI~e 415 (536)
T 3odw_A 351 KVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHE 415 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECTTTTTC---CCTTSSSCCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhcccccccceeeee
Confidence 999999999999999999999999999999999999642 22344578999874
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.96 E-value=1.2e-29 Score=200.56 Aligned_cols=132 Identities=18% Similarity=0.240 Sum_probs=122.5
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~-~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
|.++|++|..||.|++.|...++++ ++++.|..|++.++..+.+++++|.+||++|||||+||+|||++|+|+|| +|+
T Consensus 276 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~-~~~ 354 (587)
T 3ky9_A 276 YKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAM 354 (587)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCC-CHH
T ss_pred HHHhcchHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhccccCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCC-Cch
Confidence 5789999999999999999999985 56899999999999988899999999999999999999999999999998 799
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCccccccccccc
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVR 135 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~ 135 (136)
||..+..|++.|++++..+|+.+++.|+..++.+++.+|.+....+..+|| +|+
T Consensus 355 d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~l~~~gr-ll~ 408 (587)
T 3ky9_A 355 EKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGR-PKI 408 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCCSCGGGGCC-EEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhcCc-eEE
Confidence 999999999999999999999999999999999999999775555778887 554
No 13
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.96 E-value=1.8e-30 Score=194.23 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=110.7
Q ss_pred hhhhHHHHHhcH--HHHHHHHHHHhcChhHHHHHHHH-HcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 5 MLGIYQEYVRNH--HYSLQVLTECKQQPEFVQLLKRL-EMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 5 ~~~~Y~~Y~~~~--~~~~~~l~~~~~~~~f~~~~~~~-~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
+|++|..||.|| +.|...++++.+++.|..|++.+ +..+.+++++|.+||++||||||||+|||++|+|+|| +|||
T Consensus 94 ~f~~Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d 172 (354)
T 1dbh_A 94 AFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQED 172 (354)
T ss_dssp TTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHCS-CHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhchHHHHHHHHHhcCC-CCcc
Confidence 799999999999 55679999888899999999874 3445677899999999999999999999999999998 6999
Q ss_pred hHHHHHHHHHHHHHHHHHhH----------------------HHHhHHhHHHHHHHHHHHhcCC-CcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHD----------------------EVSETENLRKNLAVERLIVEGC-DILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~----------------------~~~~~e~~~~l~~~~~~i~~~~-~~l~~~~R~~i~q 136 (136)
|..+..|++.|+.++..||+ .+++.|+.+++.+++.+|.|.. +.+++|+|.||++
T Consensus 173 ~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li~e 250 (354)
T 1dbh_A 173 KECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIME 250 (354)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTEESCCSSCGGGTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCcccccccceEEEE
Confidence 99999999999999998876 6677888999999999986533 2577899999974
No 14
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.95 E-value=1.9e-30 Score=201.61 Aligned_cols=135 Identities=24% Similarity=0.418 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
++++|++|..||.|++.|...+++ +++++.|..|++.++..+.|++++|.+||++|||||+||+|||++|+|+||++|+
T Consensus 112 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~ 191 (510)
T 3jzy_A 112 ELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHA 191 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCc
Confidence 567899999999999999999988 4568999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhc--CCCccc-------ccccccccC
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVE--GCDILL-------DVNQVFVRQ 136 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~--~~~~l~-------~~~R~~i~q 136 (136)
||..+.+|++.|+.++.+||+.+++.|+.+++.+++.++.+ ..+.++ .++|.||++
T Consensus 192 d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~l~~~l~~~g~~~~l~~~~~~~~~~~r~li~e 256 (510)
T 3jzy_A 192 DHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLHS 256 (510)
T ss_dssp -----------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccccccccccccceeEEe
Confidence 99999999999999999999999999999999999998852 222222 478998874
No 15
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.95 E-value=9.2e-29 Score=173.17 Aligned_cols=105 Identities=25% Similarity=0.354 Sum_probs=95.7
Q ss_pred CCchhh-hHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809 2 LLPMLG-IYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV 80 (136)
Q Consensus 2 ~~~~~~-~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~ 80 (136)
+.|.|+ +|..||.||+.|...++++ ++.|..|++.++. +.+++++|.+||++||||+|||+|||++|+|+||++||
T Consensus 95 ~~~~f~~~Y~~Y~~n~~~a~~~l~~~--~~~f~~fl~~~~~-~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~ 171 (209)
T 1by1_A 95 LMPQMKTLYLTYCANHPSAVNVLTEH--SEELGEFMETKGA-SSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHT 171 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTTHHHHTTTTCC-CSSTTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHhcC-CCCCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCc
Confidence 457785 9999999999999999886 7899999998854 45678999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhHHhH
Q psy10809 81 ERKSLQNARQQLEDLSRQMHDEVSETENL 109 (136)
Q Consensus 81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~ 109 (136)
||..+..|++.|++++..||+.+++.|+.
T Consensus 172 d~~~l~~Al~~i~~v~~~iNe~~r~~e~~ 200 (209)
T 1by1_A 172 DRQDIQKSMAAFKNLSAQCQEVRKRKELE 200 (209)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877653
No 16
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.95 E-value=9.5e-29 Score=186.28 Aligned_cols=112 Identities=19% Similarity=0.323 Sum_probs=104.8
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
+.|+|++|..||.||+.|...+.++++++.|.+|++.++... +++++|.+||++||||||||+|||++|+|+||++|||
T Consensus 106 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~-~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d 184 (377)
T 1foe_A 106 YADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEE 184 (377)
T ss_dssp HTTGGGGHHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCTTC-CGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHhhcc-ccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChh
Confidence 468899999999999999999988888999999999987655 6789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLA 114 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~ 114 (136)
+..+..|++.|++++.+||+.++..|+..++.+
T Consensus 185 ~~~l~~Al~~~~~v~~~iNe~~r~~e~~~~~~~ 217 (377)
T 1foe_A 185 HYHLDVAIKTMNKVASHINEMQKIHEEFGAVFD 217 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888754
No 17
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.92 E-value=4.3e-25 Score=165.23 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=87.2
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
+.|.|++|..||.|++.|..++++++++ .|++.|+... +++++|.+||++||||||||+|||++|+|+|| +|+|
T Consensus 97 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~----~f~~~~~~~~-~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d 170 (353)
T 1kz7_A 97 RMEEFQIYEKYCQNKPRSESLWRQCSDC----PFFQECQKKL-DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK-HCEG 170 (353)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHH-TCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCT-TSTT
T ss_pred hhHHHHHHHHHHhChHHHHHHHHHhhcc----hHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcc
Confidence 5788999999999999999999887665 4555565443 57999999999999999999999999999999 6899
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHh
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVSE 105 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~~ 105 (136)
+..+..|++.|+.++..||+.++.
T Consensus 171 ~~~L~~Al~~i~~v~~~iN~~~~~ 194 (353)
T 1kz7_A 171 AEDLQEALSSILGILKAVNDSMHL 194 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 18
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.92 E-value=3e-26 Score=190.58 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=112.3
Q ss_pred hhhhHHHHHhcH--HHHHHHHHHHhcChhHHHHHHH-HHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 5 MLGIYQEYVRNH--HYSLQVLTECKQQPEFVQLLKR-LEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 5 ~~~~Y~~Y~~~~--~~~~~~l~~~~~~~~f~~~~~~-~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
.|++|..||.|| +.|...++.+.+++.|..|++. ++..+.|++++|.+||++|||||+||+|||++|+|+|| +|+|
T Consensus 291 ~F~~Y~~Yc~ny~~~~a~~~l~~l~~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp-~~~D 369 (1049)
T 3ksy_A 291 AFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQED 369 (1049)
T ss_dssp TTSHHHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCC-CHHH
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHhcChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCC-Ccch
Confidence 578999999997 8899999997789999999998 55556778899999999999999999999999999998 6799
Q ss_pred hHHHHHHHHHHHHHHHHHhHH----------------------HHhHHhHHHHHHHHHHHhcC-CCcccccccccccC
Q psy10809 82 RKSLQNARQQLEDLSRQMHDE----------------------VSETENLRKNLAVERLIVEG-CDILLDVNQVFVRQ 136 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~----------------------~~~~e~~~~l~~~~~~i~~~-~~~l~~~~R~~i~q 136 (136)
|..+.+|++.|++++..||+. +++.|+..++.+++..+.+. .+.+++++|.||++
T Consensus 370 ~~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~e 447 (1049)
T 3ksy_A 370 KECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIME 447 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------CCSHHHHHHHTSSSCCSSCGGGTCSCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccceEEEe
Confidence 999999999999999999973 34678888999999998653 34577999999974
No 19
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.91 E-value=8.7e-25 Score=163.62 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=85.0
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|.|+|++|..||.|++.|...++++.+ . |++.+.. ..+++++|.+||++||||||||+|||++|+|+||++|||
T Consensus 94 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~-~----~f~~~~~-~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d 167 (354)
T 2rgn_B 94 HERRLHMYVVYCQNKPKSEHVVSEFGD-S----YFEELRQ-QLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMD 167 (354)
T ss_dssp TTTTTHHHHHHHHTSHHHHHHHTTTSH-H----HHHHHHH-HHCCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSC
T ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHH-H----HHHHHHH-hcCCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence 578899999999999999999977532 3 3334433 346799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVS 104 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~ 104 (136)
|..+..|++.|+.++.++|+.++
T Consensus 168 ~~~l~~Al~~i~~v~~~in~~~~ 190 (354)
T 2rgn_B 168 TADLEQAVEVMCFVPKRCNDMMT 190 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998775
No 20
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.89 E-value=3.9e-23 Score=152.14 Aligned_cols=94 Identities=18% Similarity=0.351 Sum_probs=81.0
Q ss_pred CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE 81 (136)
Q Consensus 2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d 81 (136)
|.|+|++|..||.|++.|...+.+.. ..|++.++..+. .+++|.+||++||||||||+|||++|+|+||++|+|
T Consensus 93 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~-----~~f~~~~~~~~~-~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~ 166 (311)
T 1nty_A 93 WADKFQMYVTYCKNKPDSTQLILEHA-----GSYFDEIQQRHG-LANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE 166 (311)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHT-----TTHHHHHHHHHT-CSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTT
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHH-----HHHHHHHHHhcc-CCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 57889999999999999999996532 245555655444 479999999999999999999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHH
Q psy10809 82 RKSLQNARQQLEDLSRQMHDEVS 104 (136)
Q Consensus 82 ~~~l~~a~~~i~~~~~~in~~~~ 104 (136)
+.+|++.|++++.++|+.++
T Consensus 167 ---l~~Al~~~~~v~~~~N~~~~ 186 (311)
T 1nty_A 167 ---IKDGLEVMLSVPKRANDAMH 186 (311)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998875
No 21
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=98.44 E-value=1.9e-09 Score=73.76 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=46.8
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC
Q psy10809 74 HTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG 122 (136)
Q Consensus 74 ~t~~~~~d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~ 122 (136)
+|+++|+|+..+..|++.+++++.+||+.+++.|+.++|.++|.+|...
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~~ 50 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSK 50 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999999999999999999999999999999999653
No 22
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=72.54 E-value=24 Score=25.38 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=72.0
Q ss_pred chhhhHHHHHhcHHHHHHHHHHHh-c-----------ChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHH
Q psy10809 4 PMLGIYQEYVRNHHYSLQVLTECK-Q-----------QPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHEL 71 (136)
Q Consensus 4 ~~~~~Y~~Y~~~~~~~~~~l~~~~-~-----------~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l 71 (136)
-|+-.|.-|..+.+...+.+-.+. . -|....|-++.. ..+.++.-..|.-|--|+-.|.--.++.
T Consensus 266 hflvlyryylrhvpkniaklcsigmtdeievgrelyplpvieefdkqqk---mtkkmsvlqmlvypyfrvrtyqayvddf 342 (518)
T 4gou_A 266 HFLVLYRYYLRHVPKNIAKLCSIGMTDEIEVGRELYPLPVIEEFDKQQK---MTKKMSVLQMLVYPYFRVRTYQAYVDDF 342 (518)
T ss_dssp GGGGGGHHHHTTTTHHHHHHHHHHTSCGGGTTTTTCSHHHHHHHHHHHH---HHTSCCHHHHHHGGGGHHHHHHHHHHHH
T ss_pred eehHHHHHHHHhccHHHHHHccCCCcchhhccccccCcchHHHHHHHHH---HHHHHHHHHHHhhhhheehhHHHHHHHH
Confidence 466788889988887766664321 1 134455544433 3467899999999999999999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHHHhH
Q psy10809 72 LAHTPHDHVERKSLQNARQQLEDLSRQMHD 101 (136)
Q Consensus 72 ~k~t~~~~~d~~~l~~a~~~i~~~~~~in~ 101 (136)
+|-|..++.+-..++.+...+.-+-.-||.
T Consensus 343 ikitkkdsqevkelevvhsqlaifqelint 372 (518)
T 4gou_A 343 IKITKKDSQEVKELEVVHSQLAIFQELINT 372 (518)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888888877776666664
No 23
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=28.47 E-value=34 Score=14.60 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHh
Q psy10809 79 HVERKSLQNARQQLEDLSRQMH 100 (136)
Q Consensus 79 ~~d~~~l~~a~~~i~~~~~~in 100 (136)
|.-|+...+....+.++...|+
T Consensus 2 haiyekakevssalskvlskid 23 (26)
T 2ibf_B 2 HAIYEKAKEVSSALSKVLSKID 23 (26)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555554443
No 24
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=25.11 E-value=70 Score=19.46 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCC
Q psy10809 10 QEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPAC 45 (136)
Q Consensus 10 ~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~ 45 (136)
.+|..+.+....+++.+.....+..|+..-...|+.
T Consensus 48 ~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t~~rPRl 83 (110)
T 2ljw_A 48 TEYQEHLDSVANYLHALGGAVQVKTFITQTKERPRL 83 (110)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHCCCCCBT
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhCCCCCCC
Confidence 578888999999999888888899999988777764
No 25
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.92 E-value=1.3e+02 Score=18.36 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHH
Q psy10809 79 HVERKSLQNARQQLEDLSRQMHDEV 103 (136)
Q Consensus 79 ~~d~~~l~~a~~~i~~~~~~in~~~ 103 (136)
+++.+.+.+|.++++.++..+.+..
T Consensus 80 a~~~e~i~~A~~~Ie~Ll~~v~~~~ 104 (119)
T 2yqr_A 80 HPKPEGLAAAKKLCENLLQTVHAEY 104 (119)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhchHHHH
Confidence 3577889999999999988776543
No 26
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=22.44 E-value=74 Score=14.97 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.4
Q ss_pred Hhhchhccchhh
Q psy10809 53 FLTFPMHQIPRY 64 (136)
Q Consensus 53 ~L~~PvQRl~rY 64 (136)
.+..|+.++...
T Consensus 4 ~i~~pl~~l~~~ 15 (56)
T 2asw_A 4 TITRPIIELSNT 15 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666655543
Done!