RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10809
(136 letters)
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 104 bits (262), Expect = 3e-28
Identities = 33/134 (24%), Positives = 60/134 (44%)
Query: 3 LPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
LP L Y Y N + +L KQ L+R P + L FL P ++
Sbjct: 102 LPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLV 161
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG 122
+Y + L E+L HTP+D+ +++ L+ A ++ + +++ + E+E + L
Sbjct: 162 KYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQ 221
Query: 123 CDILLDVNQVFVRQ 136
D L+D ++V
Sbjct: 222 KDSLIDSSRVLCCH 235
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 104 bits (261), Expect = 1e-27
Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
+ ++ L +L+E C P ++ E ++ + L + +
Sbjct: 113 REQGFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQR 172
Query: 61 IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
+ +Y V L + L + D E + Q A + ++ + +D + + ENL+K + +E +
Sbjct: 173 LFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSV- 231
Query: 121 EGCDILLDVNQVFVRQ 136
G LL + F+++
Sbjct: 232 RGQGDLLQPGREFLKE 247
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 100 bits (250), Expect = 7e-27
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
LP + Y + ++ + + P+F + +KRL M P C+G L F+ PM +
Sbjct: 167 QLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQR 226
Query: 61 IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
+ RY + + +L +TP +H + L++A ++ E+L Q+++ V E EN +
Sbjct: 227 VTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDR 277
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 88.9 bits (220), Expect = 6e-22
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
IY EY NH + L+ + ++V + + SL+ FL P+ +I +
Sbjct: 204 ADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICK 263
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV--E 121
Y + L ELL +T H + K ++ A ++++++ +++ EN+ K + I E
Sbjct: 264 YPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWE 323
Query: 122 GCDIL 126
G D+L
Sbjct: 324 GEDLL 328
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 86.2 bits (213), Expect = 6e-21
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
L + Y + +L + + +F + LK+L P C+G L FL PM +
Sbjct: 112 ELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQR 171
Query: 61 IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
I RY + + +L +TP H + SL+ A ++ E+L Q+++ V E EN + ++ +
Sbjct: 172 ITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQ 231
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 84.9 bits (210), Expect = 1e-20
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQI 61
IY EY NH + L++ + + + + +++ FL P+ +I
Sbjct: 125 HQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKI 184
Query: 62 PRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV- 120
+Y + L ELL +T DH + + + A + ++++Q+++ EN+ K + ++
Sbjct: 185 CKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLD 244
Query: 121 -EGCDIL 126
EG DIL
Sbjct: 245 WEGDDIL 251
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 83.0 bits (205), Expect = 5e-20
Identities = 20/118 (16%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+ + ++ +L+++ +++ F ++ E P C+ L + M ++
Sbjct: 111 ELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLT 170
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
+Y + L ++ HT E + L AR Q ++ + +++ V +TEN + ++ +
Sbjct: 171 KYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 228
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 81.1 bits (200), Expect = 3e-19
Identities = 20/118 (16%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+ + ++ +L+++ +++ F ++ E P C+ L + M ++
Sbjct: 153 ELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLT 212
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
+Y + L ++ HT E + L AR Q ++ + +++ V +TEN + ++ +
Sbjct: 213 KYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 270
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 80.6 bits (198), Expect = 7e-19
Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 27/155 (17%)
Query: 8 IYQEYVRNHHYSL---QVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRY 64
Y+ Y R+ + L++ + + L E L L P++ Y
Sbjct: 294 PYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHY 353
Query: 65 IVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETE----------------N 108
L +L + D +++ L+ A L ++ M S++
Sbjct: 354 FELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQM 412
Query: 109 LRKNLAVERLI-----VEGCDI--LLDVNQVFVRQ 136
K LA++++ ++G + + F+ +
Sbjct: 413 KGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIME 447
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 78.5 bits (193), Expect = 3e-18
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+Y Y + + L + + L+ + +L L PM ++
Sbjct: 278 ERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVL 337
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG 122
+Y + L EL+ HT + +E+++L+ A + DL++ +++ + E LR+ + I E
Sbjct: 338 KYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSI-EN 395
Query: 123 CDILLD 128
D L
Sbjct: 396 LDQSLA 401
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 78.2 bits (192), Expect = 4e-18
Identities = 19/109 (17%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
I + ++L+ L +++ P F ++ E +P C+ L+ + M ++
Sbjct: 271 WFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLT 330
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
+Y + L + +T + ER+ ++ A + ++ ++ V + E+L +
Sbjct: 331 KYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHVNQAVRDMEDLLR 378
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 77.2 bits (190), Expect = 8e-18
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+Y Y + + L + + + L+ + +L L PM ++
Sbjct: 106 ERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVL 165
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG 122
+Y + L EL+ HT D E+++L+ A + DL++ +++ + E LR+ + I E
Sbjct: 166 KYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSI-EN 223
Query: 123 CDILLD 128
D L
Sbjct: 224 LDQSLA 229
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 76.1 bits (187), Expect = 2e-17
Identities = 19/109 (17%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
I + ++L+ L +++ P F ++ E +P C+ L+ + M ++
Sbjct: 118 WFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLT 177
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
+Y + L + +T + ER+ ++ A + ++ ++ V + E+L +
Sbjct: 178 KYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHVNQAVRDMEDLLR 225
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 74.9 bits (184), Expect = 5e-17
Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+ + N ++L+++ +++ F ++ E P C+ L+ + M ++
Sbjct: 116 KLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLT 175
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
+Y + L + +T ER+ ++ A + ++ V E EN ++ +R +
Sbjct: 176 KYPLLLDNIAKYTE-WPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLD 232
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 72.3 bits (177), Expect = 4e-16
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 1/128 (0%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
+Y + +H +VL + K F L + +LE +L P+ ++ +
Sbjct: 108 DRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQRVLK 166
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGC 123
Y + L EL A T + E L A + + ++ +++ E G
Sbjct: 167 YPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGE 226
Query: 124 DILLDVNQ 131
+
Sbjct: 227 KKEVADLS 234
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 62.7 bits (153), Expect = 3e-13
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 5 MLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRY 64
M +Y Y NH ++ VLTE E + ++ + L L+ P ++ +Y
Sbjct: 99 MKTLYLTYCANHPSAVNVLTEHS--EELGEFMETK-GASSPGILVLTTGLSKPFMRLDKY 155
Query: 65 IVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNL 113
L EL H H +R+ +Q + ++LS Q + E + L
Sbjct: 156 PTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQIL 204
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 57.3 bits (138), Expect = 7e-11
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 8 IYQEYVRNHHYS---LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRY 64
Y+ Y R+ + L++ + + L E L L P++ Y
Sbjct: 97 PYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHY 156
Query: 65 IVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
L +L + D +++ L+ A L ++ M S++ R+
Sbjct: 157 FELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRR 202
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 56.4 bits (136), Expect = 1e-10
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
L +Y Y +N S V++E + L L P+ +I +
Sbjct: 96 RRLHMYVVYCQNKPKSEHVVSEFGDS------YFEELRQQLGHRLQLNDLLIKPVQRIMK 149
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD 101
Y + L + L + ++ L+ A + + + ++ +D
Sbjct: 150 YQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCND 187
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 50.7 bits (121), Expect = 2e-08
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 6 LGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYI 65
IY++Y +N S + +C P F + K+L+ K SL+ +L P+ +I +Y
Sbjct: 101 FQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKLDHKL-----SLDSYLLKPVQRITKYQ 155
Query: 66 VTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD 101
+ L E+L ++ + LQ A + + + ++D
Sbjct: 156 LLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVND 190
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 46.7 bits (111), Expect = 3e-07
Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
+Y Y +N S Q++ E ++ + S+ +L P+ +I +
Sbjct: 95 DKFQMYVTYCKNKPDSTQLILEH-----AGSYFDEIQQRHGL-ANSISSYLIKPVQRITK 148
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD--EVSETENLRKNLAVE-RLIV 120
Y + L ELL E +++ + + + ++ +D +S E +N+ + LI+
Sbjct: 149 YQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELIL 205
Query: 121 EGCDILLD 128
+ + D
Sbjct: 206 QESFQVWD 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.012
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 28/121 (23%)
Query: 10 QEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ--IPRYIVT 67
+E ++N+ + + + L + A + ++ F Q Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFR------AVGEGNAQLVAIFG-GQGNTDDY--- 169
Query: 68 LHEL--LAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDI 125
EL L T H V ++ + + L +L R D E++ +G +I
Sbjct: 170 FEELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLD-------------AEKVFTQGLNI 215
Query: 126 L 126
L
Sbjct: 216 L 216
Score = 32.7 bits (74), Expect = 0.034
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 32/111 (28%)
Query: 8 IYQEY-------VRNHHYSLQVLTECKQQPE--------FVQLLKRLEMKPACQGRSLEM 52
+YQ Y ++ +L L E ++ L+ P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD------ 229
Query: 53 FL-----TFPMH---QIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDL 95
+L + P+ Q+ Y+VT LL TP + R L+ A + L
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGEL--RSYLKGATGHSQGL 277
Score = 28.1 bits (62), Expect = 1.1
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 15 NHHYSLQVLTECKQQPEFVQLLKR------LEMKPACQGRSLEMFLTFPMHQIPRYIVTL 68
+ L E +F ++L + +P + FL + + V
Sbjct: 25 ASFFIASQLQE-----QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 69 HELLAHTPHDHVERKSLQN 87
+ + + E L+
Sbjct: 80 FDQVLNLCLTEFENCYLEG 98
Score = 27.3 bits (60), Expect = 2.2
Identities = 27/174 (15%), Positives = 44/174 (25%), Gaps = 75/174 (43%)
Query: 3 LPMLGIYQ--EYV---RNHHYS-------LQVLTECKQQ-------------PEFVQLLK 37
P++G+ Q YV + ++ L+ T Q F ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 38 ------------------RLEMKPACQGRSLEMFLTFP--M--------HQIPRYIVTLH 69
+ P+ SLE P M Q+ Y+ +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 70 ELLAHTPHDHVERKSLQNARQQ---------LEDLSRQMHDEVSETENLRKNLA 114
L + SL N + L L+ LRK A
Sbjct: 358 SHLPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNLT----------LRKAKA 398
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 32.8 bits (74), Expect = 0.022
Identities = 9/64 (14%), Positives = 27/64 (42%)
Query: 73 AHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQV 132
+ T + VE++ L + ++D+ + +V+ E + + + + Q+
Sbjct: 1 SMTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQM 60
Query: 133 FVRQ 136
F ++
Sbjct: 61 FAKE 64
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.0 bits (72), Expect = 0.057
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 48 RSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETE 107
RS+ LT+P P I L EL+ + P +H K + + DL + + +
Sbjct: 374 RSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLR---YHKRAGDI 430
Query: 108 NLRKNLAVERLIVEGCDILLDVNQVFVRQ 136
LR VER I +G D+++ F RQ
Sbjct: 431 PLRYGWRVERHIRDG-DVVI-----FNRQ 453
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.15
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 39/153 (25%)
Query: 1 MLLPMLGIYQEYVRNHH----YSLQVLTECKQQPEFVQL-LKRLEMKPACQGRSLEMFLT 55
L ++ E +R+ V C + ++ L LE PA + +
Sbjct: 328 RRLSIIA---ESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLE--PAEYRKMFDRLSV 380
Query: 56 FPMH-QIPRYIVTLHELLAHTPHDHVE-------RKSL----------------QNARQQ 91
FP IP + L + V + SL + +
Sbjct: 381 FPPSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 92 LEDLSRQMHDEVSETENLRKNLAVERLIVEGCD 124
LE+ +H + + N+ K + LI D
Sbjct: 439 LENE-YALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Score = 29.4 bits (65), Expect = 0.43
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 39/152 (25%)
Query: 8 IYQEYVRNHHYSLQVLTECK-QQPEFVQLLKR--LEMKP--------------------A 44
+Y E + QV + + + L++ LE++P
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 45 CQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLE-------DLSR 97
C ++ + F + + L ++P +E LQ Q++ D S
Sbjct: 171 CLSYKVQCKMDFKIFWL-----NLKNC--NSPETVLEM--LQKLLYQIDPNWTSRSDHSS 221
Query: 98 QMHDEVSETENLRKNLAVERLIVEGCDILLDV 129
+ + + + L + +LL+V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Score = 29.1 bits (64), Expect = 0.47
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 35/99 (35%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQI 61
L L Y+ Y+ ++ P++ +L+ ++ FL
Sbjct: 523 TLQQLKFYKPYICDND------------PKYERLVN-----------AILDFL------- 552
Query: 62 PRYIVTLHELLAHTPHDHVERKSLQNARQQL-EDLSRQM 99
P+ E L + + + R +L + + E+ +Q+
Sbjct: 553 PKI----EENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.51
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 15/27 (55%)
Query: 27 KQQPEFVQLLKRLE--MK-------PA 44
KQ LK+L+ +K PA
Sbjct: 19 KQA------LKKLQASLKLYADDSAPA 39
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.1 bits (62), Expect = 0.91
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 48 RSLEMFLTFPMHQIPRYIVTLHELLAHTPHDH-----VERKSLQNARQQLEDLSRQMHDE 102
+S+ LT+P P I L +L+ + P++H V R S R L R
Sbjct: 368 KSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDS--GDRIDLRYSKR----- 420
Query: 103 VSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ 136
+ L+ VER I++ D +L F RQ
Sbjct: 421 -AGDIQLQYGWKVERHIMDN-DPVL-----FNRQ 447
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 85 LQNARQ-QLEDLSRQMH--DEVSETEN-------LRKNLAVERLIVEGCDILLDVNQVFV 134
+ A + Q+ + ++M +++++TEN LR E + V+G ++L +V+ V
Sbjct: 70 VNLAHERQVPAMVKRMFSGEKINQTENRAVLHVALRMPEGSEPVHVDGKNVLDEVHAVLR 129
Query: 135 R 135
R
Sbjct: 130 R 130
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 26.1 bits (58), Expect = 5.2
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 19/68 (27%)
Query: 86 QNARQQLEDLSRQMH-----------DEVSETEN-------LRKNLAVERLIVEGCDILL 127
+ L + + + +++ TE+ LR +L+ LIV+G DI
Sbjct: 53 DYILKSLLESAEKSSLKDKIKQMFNGAKINSTEHRAVLHTALR-DLSSTPLIVDGQDIRQ 111
Query: 128 DVNQVFVR 135
+V + R
Sbjct: 112 EVTKEKQR 119
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 25.7 bits (57), Expect = 5.8
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 19/68 (27%)
Query: 86 QNARQQLEDLSRQMH-----------DEVSETEN-------LRKNLAVERLIVEGCDILL 127
+ L L+ + + V+ TEN LR N + + V+G D++
Sbjct: 110 DEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALR-NRSNRPIYVDGKDVMP 168
Query: 128 DVNQVFVR 135
VN+V +
Sbjct: 169 AVNKVLDQ 176
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 25.3 bits (56), Expect = 7.4
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 86 QNARQQLEDLSRQMH-----------DEVSETEN-------LRKNLAVERLIVEGCDILL 127
Q L L+++ + +++TE+ LR N + ++V G D++
Sbjct: 85 AETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALR-NRSNSPVLVNGEDVMP 143
Query: 128 DVNQVFVR 135
VN V +
Sbjct: 144 AVNAVLAK 151
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 25.4 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 101 DEVSETEN-------LRKNLAVERLIVEGCDILLDVNQVFVR 135
V+ TEN LR N + +IV+G D++ DVN V +
Sbjct: 135 QRVNSTENRAVLHVALR-NRSNRPIIVDGKDVMSDVNNVLAQ 175
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 24.9 bits (55), Expect = 9.9
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 86 QNARQQLEDLSRQMH-----------DEVSETEN-------LRKNLAVERLIVEGCDILL 127
+ L DL+R H ++ +E+ LR L+V+G D++
Sbjct: 56 RETLALLIDLARTAHLEERRDQMFAGVHINTSEDRAVLHTALR-LPRDAELVVDGQDVVT 114
Query: 128 DVNQVFVR 135
DV+ V
Sbjct: 115 DVHAVLDA 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.399
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,038,622
Number of extensions: 108778
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 54
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)