RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10809
(136 letters)
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 71.3 bits (174), Expect = 7e-17
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 1 MLLPMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMH 59
LP + Y + ++ + + P+F + +KRLEM P C+G L F+ PM
Sbjct: 93 AQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQ 152
Query: 60 QIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
++ RY + + +L +TP +H + L++A ++ E+L Q+++ V E EN +
Sbjct: 153 RVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDR 204
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 67.1 bits (163), Expect = 4e-15
Identities = 20/117 (17%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
+ + ++ +L+++ +++ F ++ E P C+ L + M ++
Sbjct: 111 ELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLT 170
Query: 63 RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLI 119
+Y + L ++ HT E + L AR Q ++ + +++ V +TEN + ++ +
Sbjct: 171 KYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRL 227
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 63.5 bits (154), Expect = 5e-14
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 5 MLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRY 64
M +Y Y NH ++ VLTE ++ + + + L L+ P ++ +Y
Sbjct: 99 MKTLYLTYCANHPSAVNVLTEHSEE---LGEFMETKGASSPGILVLTTGLSKPFMRLDKY 155
Query: 65 IVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNL 113
L EL H H +R+ +Q + ++LS Q + E + L
Sbjct: 156 PTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQIL 204
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 62.8 bits (152), Expect = 9e-14
Identities = 22/104 (21%), Positives = 48/104 (46%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
IY EY NH + L++ + + + + +++ FL P+ +I +
Sbjct: 100 DGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICK 159
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETE 107
Y + L ELL +T DH + + + A + ++++Q+++ E
Sbjct: 160 YPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLE 203
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 61.8 bits (149), Expect = 3e-13
Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 5 MLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
+ + N ++L+++ +++ F ++ E P C+ L+ + M ++ +
Sbjct: 115 LKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTK 174
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLI 119
Y + L + +T ER+ ++ A + ++ V E EN ++ +R +
Sbjct: 175 YPLLLDNIAKYTE-WPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRL 229
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 59.0 bits (142), Expect = 3e-12
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 8 IYQEYVRNHHYS---LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRY 64
Y+ Y R+ + L++ + + L E L L P++ Y
Sbjct: 97 PYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHY 156
Query: 65 IVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
L + L D +++ L+ A L ++ M S++ R+
Sbjct: 157 FE-LLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAKRR 202
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 57.5 bits (138), Expect = 1e-11
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Query: 4 PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPR 63
+Y + +H +VL + K F L +LE +L P+ ++ +
Sbjct: 104 DRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQN-PRQQHSSTLESYLIKPIQRVLK 162
Query: 64 YIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETE 107
Y + L EL A T + E L A + + ++ +++ E
Sbjct: 163 YPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHE 206
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 55.9 bits (134), Expect = 4e-11
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 1 MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLL-KRLEMKPACQGRSLEMFLTFPMH 59
+Y Y + + L + E VQ+ + + +L L PM
Sbjct: 105 KYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQ 164
Query: 60 QIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD 101
++ +Y + L EL+ HT D E+++L+ A + DL++ +++
Sbjct: 165 RVLKYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNE 205
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 54.8 bits (131), Expect = 9e-11
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 1 MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
+ IY++Y +N S + +C P F + K+L SL+ +L P+ +
Sbjct: 94 ERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKL-----DHKLSLDSYLLKPVQR 148
Query: 61 IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD 101
I +Y + L E+L ++ H + LQ A + + + ++D
Sbjct: 149 ITKYQLLLKEMLKYSKHCE-GAEDLQEALSSILGILKAVND 188
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 43.6 bits (102), Expect = 9e-07
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQI 61
+Y Y +N S Q++ E + S+ +L P+ +I
Sbjct: 87 WADKFQMYVTYCKNKPDSTQLILEHAGSY------FDEIQQRHGLANSISSYLIKPVQRI 140
Query: 62 PRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEV 103
+Y + L ELL E +++ + + + ++ +D +
Sbjct: 141 TKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAM 179
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas
haloplanktis [TaxId: 228]}
Length = 293
Score = 26.4 bits (57), Expect = 1.4
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 114 AVERLIVEGCDILLDVNQVFVR 135
AVE+L V G IL
Sbjct: 1 AVEKLTVSGNQILAGGENTSFA 22
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 279
Score = 24.4 bits (53), Expect = 5.5
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 57 PMHQIPRYIVTLHELLAHTPHDHVERKSLQN--ARQQLED 94
P+ +P ++T H +A P R+ + QL D
Sbjct: 2 PLFLLPGLLITCH--VARIPLPAGYREEIVRYLRSVQLPD 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.399
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,747
Number of extensions: 20343
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 23
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.9 bits)