Query psy10810
Match_columns 786
No_of_seqs 368 out of 2609
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:04:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mu2_A HIV-2 RT; HIV-2 reverse 99.9 7.3E-22 2.5E-26 227.9 18.7 118 513-637 434-555 (555)
2 2qkb_A Ribonuclease H1, HS-RNA 99.9 8.4E-22 2.9E-26 188.4 14.3 127 512-640 4-152 (154)
3 2zd1_A Reverse transcriptase/r 99.9 1.8E-21 6.2E-26 224.7 18.9 117 513-636 437-557 (557)
4 3qio_A GAG-POL polyprotein; RN 99.9 2.5E-21 8.6E-26 183.3 12.7 122 511-639 8-147 (150)
5 3h08_A RNH (ribonuclease H); R 99.9 7.7E-22 2.6E-26 187.0 9.1 122 514-639 3-144 (146)
6 3p1g_A Xenotropic murine leuke 99.8 4.7E-21 1.6E-25 183.9 10.5 124 515-642 23-159 (165)
7 1jl1_A Ribonuclease HI; RNAse 99.8 3.8E-21 1.3E-25 183.8 9.8 124 515-642 4-146 (155)
8 2kq2_A Ribonuclease H-related 99.8 1.5E-21 5.1E-26 184.7 6.9 131 512-643 3-141 (147)
9 2e4l_A Ribonuclease HI, RNAse 99.8 5.3E-21 1.8E-25 183.3 9.7 122 514-639 5-145 (158)
10 1ril_A Ribonuclease H; hydrola 99.8 1.3E-20 4.3E-25 182.1 7.2 124 514-641 7-150 (166)
11 2lsn_A Reverse transcriptase; 99.8 6.9E-20 2.3E-24 175.4 10.9 124 513-638 5-162 (165)
12 3u3g_D Ribonuclease H, RNAse H 99.7 5.3E-17 1.8E-21 152.5 10.9 120 515-639 3-137 (140)
13 2ehg_A Ribonuclease HI; RNAse 99.7 1.2E-16 4E-21 151.9 11.7 119 516-640 2-135 (149)
14 3hst_B Protein RV2228C/MT2287; 99.7 1.2E-16 4.1E-21 150.3 11.5 120 515-639 3-133 (141)
15 3kyl_A Telomerase reverse tran 99.6 1.4E-16 4.8E-21 170.9 7.7 121 41-247 245-375 (596)
16 1zbf_A Ribonuclease H-related 99.2 2.9E-12 9.8E-17 119.1 3.6 116 513-631 9-139 (142)
17 4htu_A Ribonuclease H, RNAse H 99.1 1.3E-10 4.5E-15 105.7 6.8 95 513-608 3-112 (134)
18 3fsi_A RT, reverse transcripta 98.2 2.3E-06 7.7E-11 88.3 7.6 88 169-286 163-253 (255)
19 1rw3_A POL polyprotein; RNA an 97.6 4.8E-05 1.7E-09 85.2 5.5 88 169-286 167-257 (455)
20 2zd1_B P51 RT; P51/P66, hetero 97.4 7.9E-05 2.7E-09 82.5 4.5 89 168-286 146-237 (428)
21 3kyl_A Telomerase reverse tran 96.9 0.00048 1.6E-08 74.8 3.9 49 101-149 304-356 (596)
22 1xr5_A Genome polyprotein; RNA 95.8 0.013 4.4E-07 65.4 7.5 73 165-247 279-361 (466)
23 1ra6_A P3D, genome polyprotein 95.1 0.025 8.6E-07 62.9 6.8 141 17-247 206-362 (461)
24 3uqs_A RNA-dependent RNA polym 89.4 0.51 1.7E-05 52.9 7.1 40 197-246 336-376 (515)
25 1u09_A Polyprotein; protein-DN 62.0 18 0.00062 39.9 8.5 40 197-246 331-371 (476)
26 2ckw_A RNA-directed RNA polyme 58.7 38 0.0013 37.8 10.4 43 197-247 340-383 (515)
27 3n6m_A RNA-dependent RNA polym 58.0 11 0.00039 41.4 5.8 41 196-246 321-362 (462)
28 1rw3_A POL polyprotein; RNA an 53.0 3.6 0.00012 45.3 0.8 42 548-590 385-427 (455)
29 3bso_A RNA dependent RNA polym 45.5 31 0.0011 38.4 6.9 116 105-246 246-376 (510)
30 2ijd_1 Picornain 3C, RNA-direc 42.3 34 0.0012 39.3 6.7 42 196-247 503-545 (644)
31 1xr7_A Genome polyprotein; RNA 41.9 49 0.0017 36.2 7.8 41 196-246 319-360 (460)
32 1khv_A RNA-directed RNA polyme 40.0 66 0.0023 35.7 8.6 43 197-247 347-390 (516)
33 2zd1_B P51 RT; P51/P66, hetero 37.0 37 0.0013 36.8 5.8 78 514-594 323-409 (428)
34 1go4_E MAD1 (mitotic arrest de 30.2 74 0.0025 26.7 5.1 36 218-253 27-64 (100)
35 3alr_A Nanos protein; zinc-fin 24.4 36 0.0012 28.6 2.1 26 727-752 72-98 (106)
36 1y63_A LMAJ004144AAA protein; 23.8 59 0.002 30.1 4.0 39 200-238 146-184 (184)
No 1
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.87 E-value=7.3e-22 Score=227.94 Aligned_cols=118 Identities=26% Similarity=0.320 Sum_probs=96.7
Q ss_pred CCcEEEEecCCCC-CC-CeeEEEEeCCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810 513 QSHIKIYTDGSKN-EQ-GVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 513 ~~~~~iytDGS~~-~~-~~G~a~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~ 590 (786)
++.+.+|||||+. ++ ..|+|+++..+... . +....+||+.||+.|++.||+. ..+++.|+|||++|++++++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~-~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-V-KKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-E-EEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-e-ccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 5679999999983 33 37888887544322 1 2234689999999999999998 47899999999999999999
Q ss_pred cCC--CcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHh
Q psy10810 591 MFH--ENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAI 637 (786)
Q Consensus 591 ~~~--~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~ 637 (786)
|.+ +.++++++.+.+.+ +..|.+.|||||+|++|||.||+||++|+
T Consensus 508 ~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 764 45788888777665 47899999999999999999999999985
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=8.4e-22 Score=188.44 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=103.8
Q ss_pred CCCcEEEEecCCC-CCCC----eeEEEEeCCCc-ceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHH
Q psy10810 512 FQSHIKIYTDGSK-NEQG----VGCALTIPEKN-IAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCL 585 (786)
Q Consensus 512 ~~~~~~iytDGS~-~~~~----~G~a~~~~~~~-~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~ 585 (786)
.++.+.||||||+ .+++ +|+|+++..+. ......+...+|++.||+.|++.||+.+.+.+..++.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 3567999999998 3432 78998885432 2233445557899999999999999999987789999999999999
Q ss_pred HHHhccC----------------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCC
Q psy10810 586 QAITNMF----------------HENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINND 640 (786)
Q Consensus 586 ~~l~~~~----------------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~ 640 (786)
+.|.+|. ...+++++|..++.. ..|.|.|||||+|+++||.||+||++|+..+
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~--~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG--MDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTT--CEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcC--CceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9998742 123688888888774 5799999999999999999999999999765
No 3
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.87 E-value=1.8e-21 Score=224.72 Aligned_cols=117 Identities=24% Similarity=0.310 Sum_probs=93.9
Q ss_pred CCcEEEEecCCC-CCCC-eeEEEEeCCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810 513 QSHIKIYTDGSK-NEQG-VGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 513 ~~~~~iytDGS~-~~~~-~G~a~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~ 590 (786)
++.+.+|||||+ +++| +|+|+++..+.... .+ ...+||++||+.|++.||+.+ .+.+.|+|||++|++++.+
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~-~~-~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKV-VP-LTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEE-EE-ECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEE-ec-CCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 467999999998 4433 77888886543322 23 246899999999999999998 6899999999999999999
Q ss_pred cCCC--cHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHH
Q psy10810 591 MFHE--NPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQA 636 (786)
Q Consensus 591 ~~~~--~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a 636 (786)
|... .++++++.+.+.+ ...|.|.|||||+|++|||+||+||++|
T Consensus 511 ~~~~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 511 QPDKSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCSEESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCccCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 7654 5788887766655 3589999999999999999999999986
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.85 E-value=2.5e-21 Score=183.32 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=98.3
Q ss_pred cCCCcEEEEecCCC-CC-CCeeEEEEeCCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHH
Q psy10810 511 NFQSHIKIYTDGSK-NE-QGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAI 588 (786)
Q Consensus 511 ~~~~~~~iytDGS~-~~-~~~G~a~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l 588 (786)
..++.+.||||||+ ++ +..|+|+++..+... .... ..+|+++||+.|++.||+.+ ..++.|+|||+++++++
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQK-VVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 81 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEE-EEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHH
Confidence 34678999999998 33 347888887554322 2233 57899999999999999986 58999999999999999
Q ss_pred hccC----------------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcC
Q psy10810 589 TNMF----------------HENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINN 639 (786)
Q Consensus 589 ~~~~----------------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~ 639 (786)
.+|. .+.++++++.+.+.+ ...|.|.|||||+|++|||.||+||++|+..
T Consensus 82 ~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 82 TQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHTT-CSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhh-cCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 8862 223678888776654 5789999999999999999999999999875
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=7.7e-22 Score=187.04 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=97.6
Q ss_pred CcEEEEecCCCC-C-CCeeEEEEeCCC-cceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810 514 SHIKIYTDGSKN-E-QGVGCALTIPEK-NIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 514 ~~~~iytDGS~~-~-~~~G~a~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~ 590 (786)
..+.||||||+. + +..|+|+++..+ ......+....+|++.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHS
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHH
Confidence 468999999984 3 347888887433 2222333334689999999999999999976 6899999999999999987
Q ss_pred -cC----------------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcC
Q psy10810 591 -MF----------------HENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINN 639 (786)
Q Consensus 591 -~~----------------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~ 639 (786)
|. .+.++++++.+++.. ..|.|.|||||+|+++||.||+|||+|+..
T Consensus 81 ~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 81 GWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 41 124688999888875 479999999999999999999999999864
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.84 E-value=4.7e-21 Score=183.86 Aligned_cols=124 Identities=25% Similarity=0.271 Sum_probs=98.6
Q ss_pred cEEEEecCCCC--CCCeeEEEEe-CCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc-
Q psy10810 515 HIKIYTDGSKN--EQGVGCALTI-PEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN- 590 (786)
Q Consensus 515 ~~~iytDGS~~--~~~~G~a~~~-~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~- 590 (786)
.+.||||||+. ++..|+|+++ .++......+....+||++||+.|++.||+.+ ..+++.|+|||+++++++-.
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 58999999993 4557888765 33433333356678899999999999999998 37899999999999999821
Q ss_pred ----cCCCcHHHHHHHHHHhcCCCcEEEEEecCCCC-----CCcchHHhHHHHHHhcCCCC
Q psy10810 591 ----MFHENPLVKRVQEELSSIEPSIEFLWCPSHVG-----IAGNEAADEEAKQAINNDVT 642 (786)
Q Consensus 591 ----~~~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g-----~~~Ne~AD~lAk~a~~~~~~ 642 (786)
+..+.++|+++...+.+ +..|.|+|||||+| ++|||.||+||++|+..+..
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~-~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFL-PKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTS-BSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHhc-CCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 22334678888766553 57899999999999 99999999999999976544
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.84 E-value=3.8e-21 Score=183.85 Aligned_cols=124 Identities=26% Similarity=0.295 Sum_probs=98.7
Q ss_pred cEEEEecCCCC-C-CCeeEEEEeCC-CcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhcc
Q psy10810 515 HIKIYTDGSKN-E-QGVGCALTIPE-KNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNM 591 (786)
Q Consensus 515 ~~~iytDGS~~-~-~~~G~a~~~~~-~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~~ 591 (786)
.+.||||||+. + +.+|+|+++.. +......+....+|++.||+.|++.||+.+.+ ..++.|+|||+++++.|.+|
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w 81 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQW 81 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHH
Confidence 58999999994 3 34788888743 22222222224689999999999999999976 48999999999999999973
Q ss_pred C----------------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCCCC
Q psy10810 592 F----------------HENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVT 642 (786)
Q Consensus 592 ~----------------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~~~ 642 (786)
. .+.+++++|.++++. ..|.|.|||||+|+++||.||+||++|+..+..
T Consensus 82 ~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 82 IHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT--CEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHhhcccccccCCccCCHHHHHHHHHHHcc--CceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 1 123688888888764 589999999999999999999999999987654
No 8
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.84 E-value=1.5e-21 Score=184.69 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=101.2
Q ss_pred CCCcEEEEecCCCCCCCeeEEEEeC-CCcceEEe--cC--CC--CcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHH
Q psy10810 512 FQSHIKIYTDGSKNEQGVGCALTIP-EKNIAKRF--GL--NK--NASIFHAELFALLQSLLTIKELGACKALIITDSLSC 584 (786)
Q Consensus 512 ~~~~~~iytDGS~~~~~~G~a~~~~-~~~~~~~~--~~--~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a 584 (786)
+++.+.||||||+..+.+|+|+++. ++...... +. +. .++|++||+.|++.||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 3567899999999767799998874 33322222 22 22 469999999999999999888766 99999999988
Q ss_pred HHHHhc-cCCCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCCCCC
Q psy10810 585 LQAITN-MFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTH 643 (786)
Q Consensus 585 ~~~l~~-~~~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~~~~ 643 (786)
.+.+.+ |....+....+.+++++....|.|.|||||+|+++||.||+||++|+....++
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~~ 141 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLE 141 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhccccc
Confidence 877765 55555555555555554434899999999999999999999999999887654
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.83 E-value=5.3e-21 Score=183.33 Aligned_cols=122 Identities=26% Similarity=0.338 Sum_probs=97.5
Q ss_pred CcEEEEecCCCC-C-CCeeEEEEeC-CCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810 514 SHIKIYTDGSKN-E-QGVGCALTIP-EKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 514 ~~~~iytDGS~~-~-~~~G~a~~~~-~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~ 590 (786)
..+.||||||+. + +.+|+|+++. ++......+....+|++.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHT
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHH
Confidence 468999999994 3 3478898874 332222222224689999999999999999865 3899999999999999988
Q ss_pred c---------C-------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcC
Q psy10810 591 M---------F-------HENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINN 639 (786)
Q Consensus 591 ~---------~-------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~ 639 (786)
| . .+.++++.|.+++.. ..|.|.|||||+|+++||.||+||++|+..
T Consensus 83 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 83 WIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL--HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT--SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccccccCCCcccCHHHHHHHHHHHcc--CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 2 1 123688888888764 589999999999999999999999999987
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.81 E-value=1.3e-20 Score=182.05 Aligned_cols=124 Identities=22% Similarity=0.256 Sum_probs=99.0
Q ss_pred CcEEEEecCCCC-C-CCeeEEEEeCC-CcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810 514 SHIKIYTDGSKN-E-QGVGCALTIPE-KNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 514 ~~~~iytDGS~~-~-~~~G~a~~~~~-~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~ 590 (786)
..+.||||||+. + +.+|+|+++.. +......+....+|++.||+.|++.||+.+.+ ...|.|+|||+++++.|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHhh
Confidence 468899999994 3 34789988743 32222222234689999999999999998866 4699999999999999988
Q ss_pred ----------cCC-------CcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCCC
Q psy10810 591 ----------MFH-------ENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDV 641 (786)
Q Consensus 591 ----------~~~-------~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~~ 641 (786)
|.+ +.+++++|.+++.. ..|.|.|||||+|+++||.||+||++|+....
T Consensus 85 ~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 85 GWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 321 23688888888774 58999999999999999999999999998765
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.81 E-value=6.9e-20 Score=175.41 Aligned_cols=124 Identities=24% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCcEEEEecCCC-CCCC------eeEEEEeC-CC---cceEEecC-CCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeC
Q psy10810 513 QSHIKIYTDGSK-NEQG------VGCALTIP-EK---NIAKRFGL-NKNASIFHAELFALLQSLLTIKELGACKALIITD 580 (786)
Q Consensus 513 ~~~~~iytDGS~-~~~~------~G~a~~~~-~~---~~~~~~~~-~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sD 580 (786)
...++||||||+ ++++ +|+|+++. .+ ........ ....+++.||+.|+..||+.+.+. ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 456899999998 3322 78998862 22 22233333 346788899999999999887664 468999999
Q ss_pred cHHHHHHHhccC----------------CCcHHHHHHHHHHhcCCCcEEEEEecCCCCC------CcchHHhHHHHHHhc
Q psy10810 581 SLSCLQAITNMF----------------HENPLVKRVQEELSSIEPSIEFLWCPSHVGI------AGNEAADEEAKQAIN 638 (786)
Q Consensus 581 s~~a~~~l~~~~----------------~~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~------~~Ne~AD~lAk~a~~ 638 (786)
|+++++++..|. .+.++|+++.+++... ..|.|.|||||+|. +|||.||+||++|+.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~-~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMK-PDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHC-TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCC-CCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 999999997632 1237899998887753 58999999999995 579999999999985
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.69 E-value=5.3e-17 Score=152.48 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=92.8
Q ss_pred cEEEEecCCCC-C-CCeeEEEEeCC--Ccce-EEecCCCCcccHHHHHHHHHHHHHHHHHcCCC----cEEEEeCcHHHH
Q psy10810 515 HIKIYTDGSKN-E-QGVGCALTIPE--KNIA-KRFGLNKNASIFHAELFALLQSLLTIKELGAC----KALIITDSLSCL 585 (786)
Q Consensus 515 ~~~iytDGS~~-~-~~~G~a~~~~~--~~~~-~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~----~i~I~sDs~~a~ 585 (786)
.+.||||||+. + +.+|+|+++.. +... ...+..+.+|++.||+.|++.||+.+.+.+.. ++.|+|||++++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 58999999994 3 45888988733 3322 33333345899999999999999999887666 999999999999
Q ss_pred HHHhccC-CC----cHHHHHHHHH-HhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcC
Q psy10810 586 QAITNMF-HE----NPLVKRVQEE-LSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINN 639 (786)
Q Consensus 586 ~~l~~~~-~~----~~~~~~i~~~-~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~ 639 (786)
+.++++. .. +.+++++.++ +.+. ..|.|.||| .++||.||+|||+|+..
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~-~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERV-PNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHC-TTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCC-CcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 9999833 22 2355666666 6543 589999999 58999999999999853
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.68 E-value=1.2e-16 Score=151.86 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=94.3
Q ss_pred EEEEecCCCC--C-CCeeE-EEEeCC-CcceEEe--cCC---CCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHH
Q psy10810 516 IKIYTDGSKN--E-QGVGC-ALTIPE-KNIAKRF--GLN---KNASIFHAELFALLQSLLTIKELGACKALIITDSLSCL 585 (786)
Q Consensus 516 ~~iytDGS~~--~-~~~G~-a~~~~~-~~~~~~~--~~~---~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~ 585 (786)
+.+|||||+. + +++|+ |+++.. +...... ..+ ..++++.||+.|++.||+.+.+.+..++.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6799999985 3 55785 877643 3332222 222 37899999999999999999998889999999999999
Q ss_pred HHHhcc-CCC----cHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCC
Q psy10810 586 QAITNM-FHE----NPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINND 640 (786)
Q Consensus 586 ~~l~~~-~~~----~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~ 640 (786)
+.++++ ... .++++++..++.+. .|.|.|||+ ++|+.||+||++|+...
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999985 322 35788888888765 599999998 58999999999998643
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.68 E-value=1.2e-16 Score=150.28 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=92.4
Q ss_pred cEEEEecCCCC--CCCeeEEEEeCC---Ccc-eEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHH
Q psy10810 515 HIKIYTDGSKN--EQGVGCALTIPE---KNI-AKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAI 588 (786)
Q Consensus 515 ~~~iytDGS~~--~~~~G~a~~~~~---~~~-~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l 588 (786)
.+.||||||+. ++.+|+|+++.. +.. ....+..+.+|++.||+.|++.||+.+.+.+..++.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 48999999984 335888888732 222 222333347899999999999999999998889999999999999999
Q ss_pred hc-cCCCc-H---HHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcC
Q psy10810 589 TN-MFHEN-P---LVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINN 639 (786)
Q Consensus 589 ~~-~~~~~-~---~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~ 639 (786)
++ |.... . +++++..++.+ ...|.|.||| .++|+.||+||++|+..
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~-~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQ-FRRINYEWVP----RARNTYADRLANDAMDA 133 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTT-SSEEEEEECC----GGGCHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEcC----CcccHHHHHHHHHHHHH
Confidence 88 44433 3 33444455543 4789999999 48999999999999854
No 15
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=99.64 E-value=1.4e-16 Score=170.88 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=84.1
Q ss_pred ccee--c-ccccccccchHHHHHHHHhccC---CCChHHHHHhhhCCCeeEEEECCceeecceecccccCCCccccchhH
Q psy10810 41 EENF--T-LKGFNTVGTYEVILRQLHKWNM---RGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLF 114 (786)
Q Consensus 41 ~~~l--d-~~AFD~V~~~~~L~~~L~~~g~---~~~~~~~i~~~l~~r~~~v~~~~~~~s~~~~~~~Gv~qg~~~sp~l~ 114 (786)
..++ | +++||+|+|+. |++.|+..+. ++..++||+.++.... |+.+|..
T Consensus 245 ~yVVDaDIkkFFDnINHdk-LLk~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk~---------------------- 299 (596)
T 3kyl_A 245 IYGIKVDIRDAYGNVKIPV-LCKLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRKI---------------------- 299 (596)
T ss_dssp CEEEEEEESSTTTTCCHHH-HHHHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSSE----------------------
T ss_pred eEEEeeEHHhhCCCCCHHH-HHHHHHhhccccccHHHHHHHHHHHhhCe--EEECCEE----------------------
Confidence 3455 5 99999999999 9999999875 5677889988887544 5566633
Q ss_pred HHHHHhhhhhcccccccccccccchhhccccchhHHHHHHhhhccccccceeeecCcCCCCcchHHHHHHHhhcccccc-
Q psy10810 115 AIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYI- 193 (786)
Q Consensus 115 ~~~~n~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~GvpQGs~LSPlLF~l~~~~l~~~~- 193 (786)
+....|+|||+|+||+|.|+|++++.+.+
T Consensus 300 --------------------------------------------------y~qekGTPQGGVISPLLANIYLheLDkel~ 329 (596)
T 3kyl_A 300 --------------------------------------------------YKWNHGLLQGDPLSGCLCELYMAFMDRLYF 329 (596)
T ss_dssp --------------------------------------------------EEECSSSCBTCTTHHHHHHHHHHHHHHHHS
T ss_pred --------------------------------------------------EecCCcccCCcchhHHHHHHHHHHHHHHHH
Confidence 22235666666666666666666555443
Q ss_pred ---CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCCCCeeE
Q psy10810 194 ---HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQC 247 (786)
Q Consensus 194 ---~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~~KT~~ 247 (786)
..+..+++||||+++++.+.. .+++.++.+..| +++|++||.+
T Consensus 330 ~~l~kd~~LVRYADDFVIi~~Ske------~Aerfl~~Lkg~-----leLNpEKTrI 375 (596)
T 3kyl_A 330 SNLDKDAFIHRTVDDYFFCSPHPH------KVYDFELLIKGV-----YQVNPTKTRT 375 (596)
T ss_dssp TTSCTTSEEEECSSEEEEEESCHH------HHHHHHHHHHHH-----SCEEEEEEEE
T ss_pred HhhccCceEEEEcCcEEEEECCHH------HHHHHHHHhhCc-----ceECchhcee
Confidence 235679999999999987533 244555545444 3999999985
No 16
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.23 E-value=2.9e-12 Score=119.12 Aligned_cols=116 Identities=15% Similarity=0.032 Sum_probs=86.3
Q ss_pred CCcEEEEecCCCC-C-CCeeEEEEeC-CCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHh
Q psy10810 513 QSHIKIYTDGSKN-E-QGVGCALTIP-EKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAIT 589 (786)
Q Consensus 513 ~~~~~iytDGS~~-~-~~~G~a~~~~-~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~ 589 (786)
+..+.||||||+. + +.+|+|+++. .+......+....+||+.||++|++.||+.+.+... ++.|+|||+++++.+.
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 4568899999983 3 4478998885 333332222233689999999999999999998666 9999999999999998
Q ss_pred ccC--C-------CcHHHHHHHHH---HhcCCCcEEEEEecCCCCCCcchHHhH
Q psy10810 590 NMF--H-------ENPLVKRVQEE---LSSIEPSIEFLWCPSHVGIAGNEAADE 631 (786)
Q Consensus 590 ~~~--~-------~~~~~~~i~~~---~~~~~~~v~~~wvpgH~g~~~Ne~AD~ 631 (786)
+.. + +.++|+.+..+ ++.+ .+....|.-|++.-||.-||.
T Consensus 88 ~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 88 DKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred cCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 843 1 23678777654 5543 556667888888889988883
No 17
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.08 E-value=1.3e-10 Score=105.66 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=67.7
Q ss_pred CCcEEEEecCCC-CCC-CeeEEEEe-CCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHh
Q psy10810 513 QSHIKIYTDGSK-NEQ-GVGCALTI-PEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAIT 589 (786)
Q Consensus 513 ~~~~~iytDGS~-~~~-~~G~a~~~-~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~ 589 (786)
+....||||||+ ++. ..|+|+++ ..+......+....+||++||++|++.||+.+.+.+. .+.|+|||++|++.+.
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~-~v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 81 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCC-CEEEEcchHHHHHHHH
Confidence 456789999999 444 47885555 3333322222234799999999999999999988543 4899999999999998
Q ss_pred ccC--C-------CcHHHHHHHH---HHhcC
Q psy10810 590 NMF--H-------ENPLVKRVQE---ELSSI 608 (786)
Q Consensus 590 ~~~--~-------~~~~~~~i~~---~~~~~ 608 (786)
++. + +.++|+.+.+ .++.+
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~ 112 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDEAEEWLNTH 112 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred cCCcccCCCCCccCHHHHHHHHHHHHHHHhC
Confidence 742 2 2368887774 45544
No 18
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=98.17 E-value=2.3e-06 Score=88.26 Aligned_cols=88 Identities=26% Similarity=0.298 Sum_probs=71.4
Q ss_pred cCcCCCCcchHHHHHHHhhcccccc---CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCCCCe
Q psy10810 169 CGIPQGGVVSGTLFAIAINSITSYI---HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKS 245 (786)
Q Consensus 169 ~GvpQGs~LSPlLF~l~~~~l~~~~---~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~~KT 245 (786)
.-+|||-..||.+|.-+|+.++..+ ..+..+..|.||++|.+.+ . +.....+..+.+.++++||.+|++||
T Consensus 163 ~~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~--~----eeh~~~l~~v~~~L~~~gl~l~~~Kc 236 (255)
T 3fsi_A 163 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATS--E----LDCQQGTRALLQTLGNLGYRASAKKA 236 (255)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEESS--H----HHHHHHHHHHHHHHHHHTCCBCTTTC
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCC--H----HHHHHHHHHHHHHHHHCCeEECHHHh
Confidence 4469999999999999999998765 3567789999999998664 2 23556677888888999999999999
Q ss_pred eEEEecccCcCCCcceeeecCCceeeeecceEEeeeEecCC
Q psy10810 246 QCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKK 286 (786)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~id~~ 286 (786)
+.. ..+++|||..++.+
T Consensus 237 ~f~------------------------~~~~~fLG~~i~~~ 253 (255)
T 3fsi_A 237 QIC------------------------QKQVKYLGYLLKEG 253 (255)
T ss_dssp EEE------------------------ESEEEETTEEEETT
T ss_pred ccc------------------------CCceEEEEEEEeCC
Confidence 753 24678999999865
No 19
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=97.57 E-value=4.8e-05 Score=85.19 Aligned_cols=88 Identities=26% Similarity=0.299 Sum_probs=68.7
Q ss_pred cCcCCCCcchHHHHHHHhhcccccc---CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCCCCe
Q psy10810 169 CGIPQGGVVSGTLFAIAINSITSYI---HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKS 245 (786)
Q Consensus 169 ~GvpQGs~LSPlLF~l~~~~l~~~~---~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~~KT 245 (786)
.-+|||-..||.+|.-+|+.++..+ ..+..+..|+||++|.+.+ .++ ....+..+.+-++++||.+|++||
T Consensus 167 ~~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~--~~e----~~~~l~~v~~~l~~~gl~l~~~K~ 240 (455)
T 1rw3_A 167 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATS--ELD----CQQGTRALLQTLGNLGYRASAKKA 240 (455)
T ss_dssp SBCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESS--HHH----HHHHHHHHHHHHHHHTCCBCGGGC
T ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCC--HHH----HHHHHHHHHHHHHHcCCccCccch
Confidence 4579999999999999999988765 2467788999999998664 333 445556666667789999999999
Q ss_pred eEEEecccCcCCCcceeeecCCceeeeecceEEeeeEecCC
Q psy10810 246 QCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKK 286 (786)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~id~~ 286 (786)
+.. ..+++|||..++.+
T Consensus 241 ~f~------------------------~~~~~fLG~~i~~~ 257 (455)
T 1rw3_A 241 QIC------------------------QKQVKYLGYLLKEG 257 (455)
T ss_dssp CCS------------------------BSSCEETTEEESSS
T ss_pred hhh------------------------ccceeEeeeeccCC
Confidence 731 24678999999865
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=97.41 E-value=7.9e-05 Score=82.54 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=59.3
Q ss_pred ecCcCCCCcchHHHHHHHhhcccccc---CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCCCC
Q psy10810 168 VCGIPQGGVVSGTLFAIAINSITSYI---HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQK 244 (786)
Q Consensus 168 ~~GvpQGs~LSPlLF~l~~~~l~~~~---~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~~K 244 (786)
-.-+|||-..||.+|..+|+.++..+ .+++.+..|.||++|.+.+. .++ ....++.+.+-+++.||.+|++|
T Consensus 146 ~~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~-~~e----h~~~l~~v~~~l~~~gL~l~~~K 220 (428)
T 2zd1_B 146 YNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLE-IGQ----HRTKIEELRQHLLRWGLTTPDKK 220 (428)
T ss_dssp ESBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECSC-HHH----HHHHHHHHHHHHHHHHC------
T ss_pred EEeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCCc-HHH----HHHHHHHHHHHHHHhCCccChhH
Confidence 35689999999999999999998765 45667899999999987532 233 34455556666678999999999
Q ss_pred eeEEEecccCcCCCcceeeecCCceeeeecceEEeeeEecCC
Q psy10810 245 SQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKK 286 (786)
Q Consensus 245 T~~~~f~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~id~~ 286 (786)
|+. ..+++|||..++++
T Consensus 221 c~~-------------------------~~~~~fLG~~i~~~ 237 (428)
T 2zd1_B 221 HQK-------------------------EPPFLWMGYELHPD 237 (428)
T ss_dssp -------------------------------CTTCCEEECGG
T ss_pred ccc-------------------------cceEEEeccEecCC
Confidence 862 12357899999765
No 21
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=96.89 E-value=0.00048 Score=74.78 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=38.0
Q ss_pred cccCCCccccchhHHHHHHhhhhhccccc----ccccccccchhhccccchhH
Q psy10810 101 CGIPQGGVVSGTLFAIAINSITSYIHPSL----SSSLFVDDFAIFTRDKNKEV 149 (786)
Q Consensus 101 ~Gv~qg~~~sp~l~~~~~n~l~~~~~~~~----~~~~~~~d~~~~~~~~~~~~ 149 (786)
.|+||||++||+|.|+|+|.++..+...+ .--=||||.-++|.+....+
T Consensus 304 kGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Ae 356 (596)
T 3kyl_A 304 HGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVY 356 (596)
T ss_dssp SSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHH
T ss_pred CcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHH
Confidence 59999999999999999999998874322 11226999999988765443
No 22
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=95.81 E-value=0.013 Score=65.41 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=45.5
Q ss_pred eeeecCcCCCCc----chHHHHHHHhhccccc----c-CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhh
Q psy10810 165 FSIVCGIPQGGV----VSGTLFAIAINSITSY----I-HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSND 235 (786)
Q Consensus 165 ~~~~~GvpQGs~----LSPlLF~l~~~~l~~~----~-~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~ 235 (786)
+.+..|+|+|++ +..++-++++...... + ...+..+.|.||.++.+...- .++.+.+.+++
T Consensus 279 ~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~~~yGDD~iis~~~~~----------~~~~l~~~~~~ 348 (466)
T 1xr5_A 279 YVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYEL----------DPQVLATLGKN 348 (466)
T ss_dssp EEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEEEETTEEEEECSSCC----------CHHHHHHHHTT
T ss_pred EEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEEEEECCCCCceeCCCC----------CHHHHHHHHHH
Confidence 345567777743 3444444444433211 1 125678899999999876532 13556666788
Q ss_pred cCCccCC-CCeeE
Q psy10810 236 TGLFFSP-QKSQC 247 (786)
Q Consensus 236 ~gL~ln~-~KT~~ 247 (786)
.||.+++ +||..
T Consensus 349 ~Gl~~t~~dKt~~ 361 (466)
T 1xr5_A 349 YGLTITPPDKSET 361 (466)
T ss_dssp TTCCEECCSSCSS
T ss_pred cCCccChhhhcCC
Confidence 9999999 89873
No 23
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A
Probab=95.11 E-value=0.025 Score=62.90 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=83.9
Q ss_pred CcchhhccccCcchh--hhccccccccceec-ccccccccchHHHH---HHHHhccCCCChHHHHHhhhCCCeeEEEECC
Q psy10810 17 NDLTIKLRDINPKII--CIQESHLKEEENFT-LKGFNTVGTYEVIL---RQLHKWNMRGHLPIFLSKYMDPRSFKIRLNN 90 (786)
Q Consensus 17 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ld-~~AFD~V~~~~~L~---~~L~~~g~~~~~~~~i~~~l~~r~~~v~~~~ 90 (786)
.|.+.| ++|... .+........+++| ++..+++++.. +. +.|...+.++. ..++..+.. + .+..+|
T Consensus 206 ~~~~VG---~np~~~w~~l~~~l~~~~~~~DyS~FDss~~~~~-~~~~~~il~~~~~~~~-~~l~~~l~~-~--~~~~~g 277 (461)
T 1ra6_A 206 TGSAVG---XDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAW-FEALKMVLEKIGFGDR-VDYIDYLNH-S--HHLYKN 277 (461)
T ss_dssp TTBCTT---CCHHHHTTTHHHHSCSEEECCEESSHHHHCCHHH-HHHHHHHHHHTTTGGG-THHHHHHHE-E--EEEETT
T ss_pred cCceeC---CCccccHHHHHHhcCCCEEeceeCCCccchhHHH-HHHHHHHHHHhCCCcH-HHHHHhhcC-e--EEEECC
Confidence 688888 887642 11111112345578 88888887754 43 66777777775 566666554 2 234455
Q ss_pred ceeecceecccccCCCccccchhHHHHHHhhhhhcccccccccccccchhhccccchhHHHHHHhhhccccccceeeecC
Q psy10810 91 SILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCG 170 (786)
Q Consensus 91 ~~~s~~~~~~~Gv~qg~~~sp~l~~~~~n~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~G 170 (786)
.. +.+..|
T Consensus 278 ~v------------------------------------------------------------------------~~~~~G 285 (461)
T 1ra6_A 278 KT------------------------------------------------------------------------YXVKGG 285 (461)
T ss_dssp EE------------------------------------------------------------------------EEEESC
T ss_pred EE------------------------------------------------------------------------EEEEee
Confidence 22 445567
Q ss_pred cCCCCcc----hHHHHHHHhhcccccc-----CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccC
Q psy10810 171 IPQGGVV----SGTLFAIAINSITSYI-----HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFS 241 (786)
Q Consensus 171 vpQGs~L----SPlLF~l~~~~l~~~~-----~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln 241 (786)
.|+|+|. ..++-++++....... ...+..+.|.||.++-+...- .++.+.+.+++.||+++
T Consensus 286 ~PSG~p~Tsv~NSl~n~i~~~~~~~~~~~~~~~~~~~~~~yGDD~i~~~~~~~----------~~~~l~~~~~~~Gl~~t 355 (461)
T 1ra6_A 286 MPSGXSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEV----------DASLLAQSGKDYGLTMT 355 (461)
T ss_dssp CCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGGCEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCCEE
T ss_pred cCCCCCeeeeehHHHHHHHHHHHHHHcCCCCCCceEEEEecCCceEEEecccc----------CHHHHHHHHHHcCceec
Confidence 7777443 3333333333222111 124678899999999876532 13456666778999998
Q ss_pred C-CCeeE
Q psy10810 242 P-QKSQC 247 (786)
Q Consensus 242 ~-~KT~~ 247 (786)
+ +||..
T Consensus 356 ~~dKt~~ 362 (461)
T 1ra6_A 356 PADKSAT 362 (461)
T ss_dssp STTTCSS
T ss_pred ccccCCC
Confidence 6 79874
No 24
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=89.41 E-value=0.51 Score=52.91 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.9
Q ss_pred CceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCee
Q psy10810 197 LSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQ 246 (786)
Q Consensus 197 ~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~ 246 (786)
+.++.|-||.++-+...- ..+.+.+.+++.||++++ +||.
T Consensus 336 ~~~~~yGDD~i~sv~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~ 376 (515)
T 3uqs_A 336 SEFSFYGDDEVVSTNLEL----------DMVKYTMALRRYGLLPTRADKEE 376 (515)
T ss_dssp EEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCCCCCTTCCS
T ss_pred eEEEEeCCceEEEecccc----------CHHHHHHHHHHhCcEeccccccC
Confidence 456899999998766422 235666777789999998 8885
No 25
>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, foot and disease virus, transferase; 1.91A {Foot-and-mouth disease virus} SCOP: e.8.1.4 PDB: 1wne_A 2e9r_X* 2e9t_A* 2e9z_A* 2ec0_A 3kmq_A 3kms_A 3koa_A 3kna_A 3klv_A 3nky_A 3nma_A 2f8e_X* 2d7s_A* 3nl0_A
Probab=62.00 E-value=18 Score=39.92 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.2
Q ss_pred CceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccC-CCCee
Q psy10810 197 LSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFS-PQKSQ 246 (786)
Q Consensus 197 ~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln-~~KT~ 246 (786)
+..+.|-||.++.+.... .++.+.+.+++.|++++ ++||.
T Consensus 331 ~~~~~~GDD~i~~~~~~~----------~~~~~~~~~~~~Gl~~t~~dKt~ 371 (476)
T 1u09_A 331 YTMISYGDDIVVASDYDL----------DFEALKPHFKSLGQTITPADKSD 371 (476)
T ss_dssp CEEEEETTEEEEEESSCC----------CHHHHHHHHHTTTCCEEESCCSS
T ss_pred eeEEEEcCCeeeecCccc----------CHHHHHHHHHHcCcEeccccccc
Confidence 567899999999865432 24566667779999998 46764
No 26
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A
Probab=58.68 E-value=38 Score=37.75 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=26.1
Q ss_pred CceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCCC-CeeE
Q psy10810 197 LSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQ-KSQC 247 (786)
Q Consensus 197 ~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~~-KT~~ 247 (786)
+.++.|-||.++-+... ....++.+.+.+++.||+++++ ||..
T Consensus 340 ~~~~~yGDD~i~s~~~~--------~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 383 (515)
T 2ckw_A 340 ETIHTYGDDCMYSVCPA--------TASIFHTVLANLTSYGLKPTAADKSDA 383 (515)
T ss_dssp SEEEEETTEEEEEECHH--------HHHTHHHHHHHHHHHTCCC--------
T ss_pred eEEEEECCceEEEecch--------hHHHHHHHHHHHHHcCcEEeccccCCC
Confidence 46889999999976521 2233456777778999999884 8764
No 27
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET: GTP; 2.50A {Human enterovirus 71} SCOP: e.8.1.4 PDB: 3n6l_A* 3n6n_A*
Probab=57.95 E-value=11 Score=41.36 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCee
Q psy10810 196 SLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQ 246 (786)
Q Consensus 196 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~ 246 (786)
.+.++.|-||.++-+...- ..+.+.+.+++.||++++ +||.
T Consensus 321 ~~~~~~yGDD~i~s~~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~ 362 (462)
T 3n6m_A 321 ELNMVAYGDDVLASYPFPI----------DCLELAKTGKEYGLTMTPADKSP 362 (462)
T ss_dssp GCEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCEEEESSSSS
T ss_pred eEEEEeecCceEEEeCccc----------CHHHHHHHHHHcCceechhhccC
Confidence 4678899999999776532 245566667789999987 4875
No 28
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=53.04 E-value=3.6 Score=45.34 Aligned_cols=42 Identities=5% Similarity=-0.171 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHH-cCCCcEEEEeCcHHHHHHHhc
Q psy10810 548 KNASIFHAELFALLQSLLTIKE-LGACKALIITDSLSCLQAITN 590 (786)
Q Consensus 548 ~~~s~~~aEl~Ai~~aL~~~~~-~~~~~i~I~sDs~~a~~~l~~ 590 (786)
..-+.++.|+.||..|++.... ....++.|+||+. ++..+.+
T Consensus 385 ~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 385 AGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQ 427 (455)
T ss_dssp SSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSS
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCC
Confidence 4567789999999999987765 3568999999996 5555544
No 29
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=45.49 E-value=31 Score=38.41 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCccccchhHHHHHHhhhhhcccccccccccccchhhccccchhHHHHHHhhhcccccc-ceeeecCcCCCCcchHHHHH
Q psy10810 105 QGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSE-DFSIVCGIPQGGVVSGTLFA 183 (786)
Q Consensus 105 qg~~~sp~l~~~~~n~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~s~-~~~~~~GvpQGs~LSPlLF~ 183 (786)
-.|.++|.+|..+++.+....... + .........+...+-...+ .+.+..|.|=|++.--++=+
T Consensus 246 FDssl~p~~~~~~~~il~~~~~~~--------~-------~~~~~~~~l~~~~~~~~~g~v~~~~~G~PSG~p~Tsi~NS 310 (510)
T 3bso_A 246 WDSTQQRAVLAAALEIMVKFSSEP--------H-------LAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNS 310 (510)
T ss_dssp TGGGCCHHHHHHHHHHHHHTSSSH--------H-------HHHHHHHHHHSCEEEECSSEEEEECSSCCTTSTTHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcCc--------H-------HHHHHHHHhhcceeeecCCEEEEEeCcccCCCCeeeccch
Confidence 457789999988888765432210 0 0000011111112222223 56778999999997654322
Q ss_pred HHhhcccccc-------------CCCCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCee
Q psy10810 184 IAINSITSYI-------------HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQ 246 (786)
Q Consensus 184 l~~~~l~~~~-------------~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~ 246 (786)
+ +|.+.... ...+.++.|-||.++-+...- .++.+.+.++++||.+++ +||.
T Consensus 311 i-~N~i~~~~a~~~~~~~~~~~~~~~~~~~~yGDD~i~s~~~~~----------~~~~~~~~~~~~Gl~~t~~dKt~ 376 (510)
T 3bso_A 311 I-AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKL----------DPEKLTAKLKEYGLKPTRPDKTE 376 (510)
T ss_dssp H-HHHHHHHHHHHHHHTCCHHHHHHTEEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCCEECTTCCS
T ss_pred H-HHHHHHHHHHHHhcCCCHHHhhheEEEEEecCceeeccCccc----------cHHHHHHHHHHcCcCcccccccc
Confidence 2 33222111 112345799999998766432 234566667789999999 5986
No 30
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4 e.8.1.4
Probab=42.27 E-value=34 Score=39.29 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCeeE
Q psy10810 196 SLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQC 247 (786)
Q Consensus 196 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~~ 247 (786)
.+..+.|-||.++-+...- .++.+.+.+++.||++++ +||..
T Consensus 503 ~~~~~~yGDD~i~s~~~~~----------~~~~~~~~~~~~Gl~~t~~dKt~~ 545 (644)
T 2ijd_1 503 HLKMIAYGDDVIASYPHEV----------DASLLAQSGKDYGLTMTPADKSAT 545 (644)
T ss_dssp GCEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCCEEETTTCSS
T ss_pred eeEEEEeCCcEEEeccccc----------CHHHHHHHHHHcCCEechhhccCC
Confidence 4668899999998875422 245566667789999986 68763
No 31
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=41.90 E-value=49 Score=36.18 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCee
Q psy10810 196 SLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQ 246 (786)
Q Consensus 196 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~ 246 (786)
.+..+.|-||.++-+...- .++.+.+.+++.||.+++ +||.
T Consensus 319 ~~~~~~yGDD~i~s~~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~ 360 (460)
T 1xr7_A 319 KLKIIAYGDDVIFSYKYKL----------DMEAIAKEGQKYGLTITPADKSS 360 (460)
T ss_dssp GCEEEEETTEEEEEESSCC----------CHHHHHHTTGGGTCCEEESTTCS
T ss_pred ceeEEEecCceEEEeCCcC----------CHHHHHHHHHHcCcEechhhhcC
Confidence 4678899999999775431 256677778899999984 7886
No 32
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase, transferase; 2.50A {Rabbit hemorrhagic disease virus} SCOP: e.8.1.4 PDB: 1khw_A
Probab=39.99 E-value=66 Score=35.74 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=31.0
Q ss_pred CceeeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCCccCC-CCeeE
Q psy10810 197 LSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSP-QKSQC 247 (786)
Q Consensus 197 ~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL~ln~-~KT~~ 247 (786)
+.++.|-||.++-+... ....++.+.+.+++.||.+++ +||..
T Consensus 347 ~~~~~yGDD~i~s~~~~--------~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 390 (516)
T 1khv_A 347 APFYTYGDDGVYAMTPM--------MVSLLPAIIENLRDYGLSPTAADKTEF 390 (516)
T ss_dssp SCEEEETTEEEEEECHH--------HHHTHHHHHHHHHHTTCCEEESSTTSC
T ss_pred eeEEEecCceEEEecch--------hhhHHHHHHHHHHHcCcEeccccccCC
Confidence 57889999999976521 123445677777889999985 68753
No 33
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=37.04 E-value=37 Score=36.77 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCCCeeEEEEeCCC--cce--EEecCCCCcccHHHHHHH-HHHHHHHHHHc--C--CCcEEEEeCcHHH
Q psy10810 514 SHIKIYTDGSKNEQGVGCALTIPEK--NIA--KRFGLNKNASIFHAELFA-LLQSLLTIKEL--G--ACKALIITDSLSC 584 (786)
Q Consensus 514 ~~~~iytDGS~~~~~~G~a~~~~~~--~~~--~~~~~~~~~s~~~aEl~A-i~~aL~~~~~~--~--~~~i~I~sDs~~a 584 (786)
..+.++||+|.. | ++|++..++ ... ..+........++-|++| +..||+..... + ...++++||++..
T Consensus 323 ~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 323 KDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp SCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHH
T ss_pred CCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHH
Confidence 457899999842 1 334444222 211 223334455566777777 99999755431 2 3567889999976
Q ss_pred HHHHhccCCC
Q psy10810 585 LQAITNMFHE 594 (786)
Q Consensus 585 ~~~l~~~~~~ 594 (786)
......|...
T Consensus 400 ~~~~~~~q~~ 409 (428)
T 2zd1_B 400 TWWTEYWQAT 409 (428)
T ss_dssp HHHHHHCCCS
T ss_pred HHHHhccccc
Confidence 6555444443
No 34
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.19 E-value=74 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--ccCCCCeeEEEeccc
Q psy10810 218 LVSIMQESIDKLENFSNDTGL--FFSPQKSQCVLFSRK 253 (786)
Q Consensus 218 ~~~~lq~~l~~l~~w~~~~gL--~ln~~KT~~~~f~~~ 253 (786)
-...|.+-.+.++.+.....| .+|+.||+|+||+..
T Consensus 27 E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~N 64 (100)
T 1go4_E 27 ERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLN 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCC
Confidence 345667777778777777666 899999999999765
No 35
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=24.36 E-value=36 Score=28.56 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCCCCCCCccCccccccccccc-cCCC
Q psy10810 727 PICDQCQEPMTIEHILISCRKM-RFRP 752 (786)
Q Consensus 727 ~~C~~Cg~~~t~~H~l~~Cp~~-~~R~ 752 (786)
-.|+.||+..+-.|..-.||+. ....
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~ 98 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYC 98 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccC
Confidence 5699999999999999999987 4443
No 36
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.79 E-value=59 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=28.1
Q ss_pred eeeecceeEEeccCChHHHHHHHHHHHHHHHHHHhhcCC
Q psy10810 200 SLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGL 238 (786)
Q Consensus 200 ~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gL 238 (786)
..|++|++|-+.+.+.++...++++.++.+..|...+||
T Consensus 146 ~~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~~~~~~~~ 184 (184)
T 1y63_A 146 DAYEDDIVLVRENDTLEQMAATVEEIRERVEVLKVERGL 184 (184)
T ss_dssp HHSCGGGEEEEECSSHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHhccCcEEECCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 447778888777778888888889999999999888775
Done!